BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0543c Length=100 Score E Sequences producing significant alignments: (Bits) Value gi|291463374|pdb|2KVC|A Chain A, Solution Structure Of The Mycob... 202 1e-50 gi|15607683|ref|NP_215057.1| hypothetical protein Rv0543c [Mycob... 202 1e-50 gi|289446090|ref|ZP_06435834.1| conserved hypothetical protein [... 200 6e-50 gi|240169223|ref|ZP_04747882.1| hypothetical protein MkanA1_0791... 160 8e-38 gi|15828206|ref|NP_302469.1| hypothetical protein ML2258 [Mycoba... 153 8e-36 gi|296168306|ref|ZP_06850230.1| conserved hypothetical protein [... 149 2e-34 gi|254821892|ref|ZP_05226893.1| hypothetical protein MintA_18302... 148 3e-34 gi|41410137|ref|NP_962973.1| hypothetical protein MAP4039c [Myco... 147 6e-34 gi|342858948|ref|ZP_08715602.1| hypothetical protein MCOL_08728 ... 146 8e-34 gi|169631030|ref|YP_001704679.1| hypothetical protein MAB_3951 [... 140 5e-32 gi|118616446|ref|YP_904778.1| hypothetical protein MUL_0642 [Myc... 139 2e-31 gi|333989176|ref|YP_004521790.1| hypothetical protein JDM601_053... 128 2e-28 gi|120401953|ref|YP_951782.1| hypothetical protein Mvan_0938 [My... 113 1e-23 gi|118463005|ref|YP_883730.1| hypothetical protein MAV_4601 [Myc... 113 1e-23 gi|336118633|ref|YP_004573402.1| hypothetical protein MLP_29850 ... 110 6e-23 gi|118469236|ref|YP_885459.1| hypothetical protein MSMEG_1063 [M... 108 3e-22 gi|145220638|ref|YP_001131316.1| hypothetical protein Mflv_0032 ... 102 2e-20 gi|111019003|ref|YP_701975.1| hypothetical protein RHA1_ro02010 ... 101 3e-20 gi|226361098|ref|YP_002778876.1| hypothetical protein ROP_16840 ... 99.0 2e-19 gi|229490644|ref|ZP_04384482.1| conserved hypothetical protein [... 98.2 3e-19 gi|226305177|ref|YP_002765135.1| hypothetical protein RER_16880 ... 95.5 2e-18 gi|119866795|ref|YP_936747.1| hypothetical protein Mkms_0741 [My... 94.0 7e-18 gi|312141049|ref|YP_004008385.1| hypothetical protein REQ_37190 ... 92.8 2e-17 gi|84498495|ref|ZP_00997265.1| hypothetical protein JNB_16594 [J... 90.5 7e-17 gi|54027222|ref|YP_121464.1| hypothetical protein nfa52480 [Noca... 90.1 9e-17 gi|326383021|ref|ZP_08204710.1| hypothetical protein SCNU_08791 ... 87.8 5e-16 gi|262201047|ref|YP_003272255.1| hypothetical protein Gbro_1053 ... 84.3 6e-15 gi|296138438|ref|YP_003645681.1| hypothetical protein Tpau_0705 ... 83.6 8e-15 gi|145220635|ref|YP_001131313.1| hypothetical protein Mflv_0029 ... 82.0 2e-14 gi|296138439|ref|YP_003645682.1| hypothetical protein Tpau_0706 ... 82.0 2e-14 gi|343926009|ref|ZP_08765524.1| hypothetical protein GOALK_050_0... 81.6 3e-14 gi|118466725|ref|YP_881673.1| hypothetical protein MAV_2481 [Myc... 81.3 5e-14 gi|229490285|ref|ZP_04384127.1| conserved hypothetical protein [... 79.3 2e-13 gi|54027223|ref|YP_121465.1| hypothetical protein nfa52490 [Noca... 79.0 2e-13 gi|41407862|ref|NP_960698.1| hypothetical protein MAP1764 [Mycob... 78.6 3e-13 gi|296393708|ref|YP_003658592.1| hypothetical protein Srot_1292 ... 78.6 3e-13 gi|111220916|ref|YP_711710.1| hypothetical protein FRAAL1463 [Fr... 78.2 3e-13 gi|296393030|ref|YP_003657914.1| hypothetical protein Srot_0601 ... 78.2 3e-13 gi|317507991|ref|ZP_07965683.1| melanoma-associated antigen E1 [... 78.2 4e-13 gi|342859731|ref|ZP_08716384.1| hypothetical protein MCOL_12658 ... 77.8 5e-13 gi|226307120|ref|YP_002767080.1| hypothetical protein RER_36330 ... 77.4 7e-13 gi|226307121|ref|YP_002767081.1| hypothetical protein RER_36340 ... 77.4 7e-13 gi|118473520|ref|YP_885462.1| hypothetical protein MSMEG_1066 [M... 76.6 1e-12 gi|229490320|ref|ZP_04384162.1| conserved hypothetical protein [... 76.6 1e-12 gi|331699574|ref|YP_004335813.1| hypothetical protein Psed_5836 ... 76.6 1e-12 gi|306440738|pdb|3OL3|A Chain A, Crystal Structure Of A Putative... 76.6 1e-12 gi|309811066|ref|ZP_07704864.1| conserved hypothetical protein [... 76.6 1e-12 gi|108797709|ref|YP_637906.1| hypothetical protein Mmcs_0730 [My... 75.9 2e-12 gi|296165103|ref|ZP_06847654.1| conserved hypothetical protein [... 75.5 2e-12 gi|254822131|ref|ZP_05227132.1| hypothetical protein MintA_19509... 75.1 3e-12 >gi|291463374|pdb|2KVC|A Chain A, Solution Structure Of The Mycobacterium Tuberculosis Protein Rv0543c, A Member Of The Duf3349 Superfamily. Seattle Structural Genomics Center For Infectious Disease Target Mytud.17112.A Length=103 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/100 (99%), Positives = 100/100 (100%), Gaps = 0/100 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +NRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG Sbjct 4 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 63 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 100 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA Sbjct 64 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 103 >gi|15607683|ref|NP_215057.1| hypothetical protein Rv0543c [Mycobacterium tuberculosis H37Rv] gi|31791725|ref|NP_854218.1| hypothetical protein Mb0557c [Mycobacterium bovis AF2122/97] gi|121636461|ref|YP_976684.1| hypothetical protein BCG_0587c [Mycobacterium bovis BCG str. Pasteur 1173P2] 75 more sequence titles Length=100 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/100 (99%), Positives = 100/100 (100%), Gaps = 0/100 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +NRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG Sbjct 1 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 100 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA Sbjct 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 100 >gi|289446090|ref|ZP_06435834.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289419048|gb|EFD16249.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=100 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 98/100 (98%), Positives = 99/100 (99%), Gaps = 0/100 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +NRFLTSIVAWLRAGYPEGIPPTDSFAVLALLC RLSHDEVKAVANELMRLGDFDQIDIG Sbjct 1 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCHRLSHDEVKAVANELMRLGDFDQIDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 100 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA Sbjct 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 100 >gi|240169223|ref|ZP_04747882.1| hypothetical protein MkanA1_07914 [Mycobacterium kansasii ATCC 12478] Length=101 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 79/101 (79%), Positives = 91/101 (91%), Gaps = 1/101 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +NRFLTSIV+WLRAGYPEG+PPTDSFAVLALL RRL++DEV+AVA EL+R G+FDQIDIG Sbjct 1 MNRFLTSIVSWLRAGYPEGVPPTDSFAVLALLARRLTNDEVQAVAGELIRRGEFDQIDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRD-REEHA 100 VVIT FTD+LPSP+DVE+VRARLAA GWP D V + RE HA Sbjct 61 VVITQFTDDLPSPDDVEQVRARLAAHGWPFDPVDETREGHA 101 >gi|15828206|ref|NP_302469.1| hypothetical protein ML2258 [Mycobacterium leprae TN] gi|221230683|ref|YP_002504099.1| hypothetical protein MLBr_02258 [Mycobacterium leprae Br4923] gi|699352|gb|AAA63112.1| u296w [Mycobacterium leprae] gi|13093760|emb|CAC31214.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933790|emb|CAR72356.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=100 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 72/98 (74%), Positives = 86/98 (88%), Gaps = 0/98 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +NRFLTSIV+WLRAGYPEGIP TD+FAVLALL RRL++DEVK VA EL+R G+FD+IDIG Sbjct 1 MNRFLTSIVSWLRAGYPEGIPATDTFAVLALLARRLTNDEVKLVARELIRRGEFDKIDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREE 98 V+I+H TDELPSP+D+ERVR RL A+GW LD+ RD E Sbjct 61 VMISHLTDELPSPQDIERVRTRLNAKGWLLDNARDNGE 98 >gi|296168306|ref|ZP_06850230.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896737|gb|EFG76370.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=100 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 0/100 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +N FL SIV+WLRAGYPEG+PPTD+F VLALL RRLS+DEVK VA EL+R G+FD +DIG Sbjct 1 MNGFLNSIVSWLRAGYPEGVPPTDTFPVLALLARRLSNDEVKEVACELIRRGEFDDVDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 100 V+IT TDELP+PEDVERVR RLAAQGWP DD + E+ A Sbjct 61 VLITQITDELPTPEDVERVRLRLAAQGWPFDDADEVEDPA 100 >gi|254821892|ref|ZP_05226893.1| hypothetical protein MintA_18302 [Mycobacterium intracellulare ATCC 13950] Length=100 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/92 (77%), Positives = 80/92 (87%), Gaps = 0/92 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +N FL SIV+WLRAGYPEG+PPTD+F VLALL RRLS+DE KAVA EL+R G+FD +DIG Sbjct 1 MNGFLNSIVSWLRAGYPEGVPPTDTFPVLALLARRLSNDEAKAVACELVRRGEFDDVDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 V+IT TDELPSP+DVERVR RLAAQGWP DD Sbjct 61 VLITQITDELPSPQDVERVRVRLAAQGWPFDD 92 >gi|41410137|ref|NP_962973.1| hypothetical protein MAP4039c [Mycobacterium avium subsp. paratuberculosis K-10] gi|254777034|ref|ZP_05218550.1| hypothetical protein MaviaA2_20534 [Mycobacterium avium subsp. avium ATCC 25291] gi|41398970|gb|AAS06589.1| hypothetical protein MAP_4039c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460484|gb|EGO39379.1| Protein of unknown function (DUF3349) [Mycobacterium avium subsp. paratuberculosis S397] Length=100 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 69/92 (75%), Positives = 81/92 (89%), Gaps = 0/92 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +N FL+SIV+WLRAGYPEG+PPTD+F VLALL RRLS DEVK VA+EL+R G+FD +DIG Sbjct 1 MNGFLSSIVSWLRAGYPEGVPPTDTFPVLALLARRLSGDEVKDVASELIRRGEFDDVDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 V+IT TDELP+P+DVERVR RLAAQGWP DD Sbjct 61 VLITQITDELPTPDDVERVRVRLAAQGWPFDD 92 >gi|342858948|ref|ZP_08715602.1| hypothetical protein MCOL_08728 [Mycobacterium colombiense CECT 3035] gi|342133189|gb|EGT86392.1| hypothetical protein MCOL_08728 [Mycobacterium colombiense CECT 3035] Length=100 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 70/92 (77%), Positives = 79/92 (86%), Gaps = 0/92 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +N FL SIV+WLRAGYPEG+PPTD+F VLALL RRLS+DE KAVA EL+R G+FD +DIG Sbjct 1 MNGFLNSIVSWLRAGYPEGVPPTDTFPVLALLTRRLSNDEAKAVACELVRRGEFDDVDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 V+IT TDELPSP DVERVR RLAAQGWP DD Sbjct 61 VLITQITDELPSPADVERVRVRLAAQGWPFDD 92 >gi|169631030|ref|YP_001704679.1| hypothetical protein MAB_3951 [Mycobacterium abscessus ATCC 19977] gi|169242997|emb|CAM64025.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=144 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 67/100 (67%), Positives = 77/100 (77%), Gaps = 0/100 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 VN FL IV WLRAGYPEG+PP D +LALL RRLS+DEVK VA ELM GDFD IDIG Sbjct 32 VNAFLNKIVTWLRAGYPEGVPPPDYVPLLALLGRRLSNDEVKTVARELMARGDFDNIDIG 91 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA 100 V+IT TDELP+ ED+ER+R RLA +GWPLDD R+ +H Sbjct 92 VLITQITDELPTGEDIERIRERLAKKGWPLDDPREPADHG 131 >gi|118616446|ref|YP_904778.1| hypothetical protein MUL_0642 [Mycobacterium ulcerans Agy99] gi|183980910|ref|YP_001849201.1| hypothetical protein MMAR_0889 [Mycobacterium marinum M] gi|118568556|gb|ABL03307.1| conserved protein [Mycobacterium ulcerans Agy99] gi|183174236|gb|ACC39346.1| conserved protein [Mycobacterium marinum M] Length=98 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/95 (78%), Positives = 86/95 (91%), Gaps = 0/95 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +NRFLTSIV+WLRAGYP+G+PPTDSFA+LALLCRRLS+++V VA ELMR G+FDQIDIG Sbjct 1 MNRFLTSIVSWLRAGYPDGVPPTDSFALLALLCRRLSNEDVTTVATELMRRGEFDQIDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRD 95 V IT TD+LPSPED+ERVRARLAA GWPLDD R+ Sbjct 61 VAITQITDDLPSPEDIERVRARLAATGWPLDDARE 95 >gi|333989176|ref|YP_004521790.1| hypothetical protein JDM601_0536 [Mycobacterium sp. JDM601] gi|333485144|gb|AEF34536.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=100 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/92 (68%), Positives = 76/92 (83%), Gaps = 0/92 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 + +FLTSIVAWLRAGYP+G+P TD +LALL RRL++DEVKAVA EL+ G+FD IDIG Sbjct 1 MTKFLTSIVAWLRAGYPDGVPQTDYIPLLALLSRRLTNDEVKAVAGELIGRGEFDHIDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 V+I T+ELP+ EDV+RVR RLAA+GW LDD Sbjct 61 VMIARLTNELPAQEDVDRVRDRLAAKGWLLDD 92 >gi|120401953|ref|YP_951782.1| hypothetical protein Mvan_0938 [Mycobacterium vanbaalenii PYR-1] gi|119954771|gb|ABM11776.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=108 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/106 (65%), Positives = 77/106 (73%), Gaps = 8/106 (7%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDF------ 54 + RFL IVAW+ AGYPEGIP D +LALL RRL+ DEVKAV EL+ +F Sbjct 1 MTRFLARIVAWIAAGYPEGIPGADRIPLLALLRRRLTDDEVKAVVAELIARAEFGERGSV 60 Query 55 --DQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREE 98 D +DIGV+IT TDELPSP+DVERVRARLAAQGWPLDD RD EE Sbjct 61 DIDPVDIGVLITQITDELPSPDDVERVRARLAAQGWPLDDPRDAEE 106 >gi|118463005|ref|YP_883730.1| hypothetical protein MAV_4601 [Mycobacterium avium 104] gi|118164292|gb|ABK65189.1| conserved hypothetical protein [Mycobacterium avium 104] Length=81 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/73 (74%), Positives = 63/73 (87%), Gaps = 0/73 (0%) Query 20 IPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERV 79 +PPTD+F VLALL RRLS DEVK VA+EL+R G+FD +DIGV+IT TDELP+P+DVERV Sbjct 1 MPPTDTFPVLALLARRLSGDEVKDVASELIRRGEFDDVDIGVLITQITDELPTPDDVERV 60 Query 80 RARLAAQGWPLDD 92 R RLAAQGWP DD Sbjct 61 RVRLAAQGWPFDD 73 >gi|336118633|ref|YP_004573402.1| hypothetical protein MLP_29850 [Microlunatus phosphovorus NM-1] gi|334686414|dbj|BAK35999.1| hypothetical protein MLP_29850 [Microlunatus phosphovorus NM-1] Length=101 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 57/89 (65%), Positives = 66/89 (75%), Gaps = 2/89 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDF--DQIDIGV 61 FL SIV WLRAGYPEGIP +D +LA+L RRLS+DEV+ VA EL+ G+ D IDIG Sbjct 6 FLGSIVTWLRAGYPEGIPESDYIPLLAVLARRLSNDEVQQVARELIAAGELPVDHIDIGA 65 Query 62 VITHFTDELPSPEDVERVRARLAAQGWPL 90 VI FTDELP EDV+RVR +L A GWPL Sbjct 66 VIIKFTDELPRDEDVDRVRDKLIAHGWPL 94 >gi|118469236|ref|YP_885459.1| hypothetical protein MSMEG_1063 [Mycobacterium smegmatis str. MC2 155] gi|118170523|gb|ABK71419.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=107 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/98 (62%), Positives = 72/98 (74%), Gaps = 0/98 (0%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIG 60 +N FL I AWL AGYPEG+P D +LALL RRL++DE+KA+A +L + FD IDIG Sbjct 1 MNAFLAKIAAWLNAGYPEGVPGPDRVPLLALLTRRLTNDEIKAIAEDLEKRAHFDHIDIG 60 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREE 98 V+IT TDE+P ED+ERVR LA QGWPLDD RD EE Sbjct 61 VLITQMTDEMPREEDIERVRRHLALQGWPLDDPRDGEE 98 >gi|145220638|ref|YP_001131316.1| hypothetical protein Mflv_0032 [Mycobacterium gilvum PYR-GCK] gi|315442414|ref|YP_004075293.1| hypothetical protein Mspyr1_07580 [Mycobacterium sp. Spyr1] gi|145213124|gb|ABP42528.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315260717|gb|ADT97458.1| hypothetical protein Mspyr1_07580 [Mycobacterium sp. Spyr1] Length=105 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/104 (58%), Positives = 73/104 (71%), Gaps = 6/104 (5%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDF------ 54 + +FL IVAW+ GYPEG+P D +LALL RRL+ DEV+AV EL + Sbjct 1 MTKFLARIVAWIVEGYPEGVPGPDRVPLLALLRRRLTDDEVRAVVTELRTRAELTDTPGI 60 Query 55 DQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREE 98 D +DIGV+IT TD LPSP+D+ERVRARLAAQGWPLDD RD E+ Sbjct 61 DTVDIGVLITEITDGLPSPDDIERVRARLAAQGWPLDDSRDEED 104 >gi|111019003|ref|YP_701975.1| hypothetical protein RHA1_ro02010 [Rhodococcus jostii RHA1] gi|110818533|gb|ABG93817.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=99 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/89 (59%), Positives = 63/89 (71%), Gaps = 2/89 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGD--FDQIDIGV 61 FL+SI+ WLRAGYP G+P D + ALL RRLS DEV AVA+ L+ GD ++ DI V Sbjct 6 FLSSIIGWLRAGYPNGVPEQDYIPLFALLTRRLSEDEVDAVADALVEEGDIPIEKTDIQV 65 Query 62 VITHFTDELPSPEDVERVRARLAAQGWPL 90 +IT TDELP DV+RVR+ LAA GWPL Sbjct 66 LITKVTDELPLESDVDRVRSNLAAGGWPL 94 >gi|226361098|ref|YP_002778876.1| hypothetical protein ROP_16840 [Rhodococcus opacus B4] gi|226239583|dbj|BAH49931.1| hypothetical protein [Rhodococcus opacus B4] Length=99 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/89 (57%), Positives = 61/89 (69%), Gaps = 2/89 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDF--DQIDIGV 61 FL+SI+ WLRAGYP G+P D + ALL RRLS DEV AVA+ L+ GD ++ DI V Sbjct 6 FLSSIIGWLRAGYPNGVPEQDYIPLFALLTRRLSEDEVDAVADALVEEGDLPIEKTDIQV 65 Query 62 VITHFTDELPSPEDVERVRARLAAQGWPL 90 +IT TDELP DV+RVR+ L GWPL Sbjct 66 LITKVTDELPLESDVDRVRSNLTVGGWPL 94 >gi|229490644|ref|ZP_04384482.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229322464|gb|EEN88247.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=100 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/89 (58%), Positives = 62/89 (70%), Gaps = 2/89 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDF--DQIDIGV 61 FLTSIV WLRAGYP G+P D + ALL RRLS EV AVA+ L+ GD ++ DI V Sbjct 6 FLTSIVGWLRAGYPNGVPEQDYIPLFALLTRRLSETEVDAVADALIEDGDLPIEKTDIQV 65 Query 62 VITHFTDELPSPEDVERVRARLAAQGWPL 90 +IT T+E+P DV+RVR+ LAA GWPL Sbjct 66 LITKITNEMPLETDVDRVRSHLAAGGWPL 94 >gi|226305177|ref|YP_002765135.1| hypothetical protein RER_16880 [Rhodococcus erythropolis PR4] gi|226184292|dbj|BAH32396.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=100 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/89 (57%), Positives = 61/89 (69%), Gaps = 2/89 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDF--DQIDIGV 61 FLTSIV WLRAGYP G+P D + ALL RRLS EV AVA+ L+ GD ++ DI V Sbjct 6 FLTSIVGWLRAGYPNGVPEQDYIPLFALLTRRLSEAEVDAVADALIEDGDLPIEKTDIQV 65 Query 62 VITHFTDELPSPEDVERVRARLAAQGWPL 90 +IT T+E+P DV+RVR+ LA GWPL Sbjct 66 LITKITNEMPLETDVDRVRSHLADGGWPL 94 >gi|119866795|ref|YP_936747.1| hypothetical protein Mkms_0741 [Mycobacterium sp. KMS] gi|126433332|ref|YP_001069023.1| hypothetical protein Mjls_0721 [Mycobacterium sp. JLS] gi|119692884|gb|ABL89957.1| hypothetical protein Mkms_0741 [Mycobacterium sp. KMS] gi|126233132|gb|ABN96532.1| hypothetical protein Mjls_0721 [Mycobacterium sp. JLS] Length=99 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/95 (54%), Positives = 66/95 (70%), Gaps = 0/95 (0%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVI 63 FL IV W+ AGYPEG+P D +LALL RRL+ +EV AVA L G +D +DI V+I Sbjct 4 FLAKIVGWITAGYPEGVPGPDRVPLLALLRRRLTDEEVTAVAQTLAERGQWDHVDIAVMI 63 Query 64 THFTDELPSPEDVERVRARLAAQGWPLDDVRDREE 98 T TD++P+P D+ERVR RLA + WP+DD RE+ Sbjct 64 TSITDDMPTPADIERVRTRLAGRSWPIDDREPRED 98 >gi|312141049|ref|YP_004008385.1| hypothetical protein REQ_37190 [Rhodococcus equi 103S] gi|325675314|ref|ZP_08154998.1| hypothetical protein HMPREF0724_12780 [Rhodococcus equi ATCC 33707] gi|311890388|emb|CBH49706.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325553285|gb|EGD22963.1| hypothetical protein HMPREF0724_12780 [Rhodococcus equi ATCC 33707] Length=100 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/89 (54%), Positives = 59/89 (67%), Gaps = 2/89 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDF--DQIDIGV 61 FL+SI+ WLRAGYP G+P D + ALL RRLS DEV V L+ GD + DI V Sbjct 6 FLSSIIDWLRAGYPNGVPEQDYVPLFALLTRRLSEDEVDLVTAALVEDGDLPISKTDIQV 65 Query 62 VITHFTDELPSPEDVERVRARLAAQGWPL 90 +IT T+E+P DV+RVR+ LAA GWPL Sbjct 66 LITKITNEMPLESDVDRVRSHLAAGGWPL 94 >gi|84498495|ref|ZP_00997265.1| hypothetical protein JNB_16594 [Janibacter sp. HTCC2649] gi|84381238|gb|EAP97122.1| hypothetical protein JNB_16594 [Janibacter sp. HTCC2649] Length=215 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/91 (61%), Positives = 64/91 (71%), Gaps = 2/91 (2%) Query 3 RFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMR--LGDFDQIDIG 60 R L IV+WLR GYP+G+PP D F +LALL RRLS DE+KAVA L + + DIG Sbjct 117 RPLERIVSWLREGYPQGVPPQDYFPLLALLRRRLSDDEIKAVAKSLRKAEVSPVTPADIG 176 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLD 91 V IT T ELPS ED+ERVRARL +GWPLD Sbjct 177 VEITRVTQELPSDEDLERVRARLEKKGWPLD 207 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/92 (55%), Positives = 61/92 (67%), Gaps = 6/92 (6%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGD----FDQIDI 59 LT +VAWLRAGYPEGIP TD +LA+L RRL+H+EV+++A +L+ D + DI Sbjct 8 LLTRVVAWLRAGYPEGIPATDYPPLLAVLSRRLTHEEVESIAADLVAASDDPSSVNIEDI 67 Query 60 GVVI-THFTDELPSPEDVERVRARLAAQGWPL 90 I H DE PEDV RV ARLAA GWPL Sbjct 68 RAFIGEHLLDEA-HPEDVARVSARLAAGGWPL 98 >gi|54027222|ref|YP_121464.1| hypothetical protein nfa52480 [Nocardia farcinica IFM 10152] gi|54018730|dbj|BAD60100.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=92 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/86 (53%), Positives = 61/86 (71%), Gaps = 2/86 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVI 63 FL +I+ WLRAGYPEG+P +D +LA+L RRLS DEV +A+ + G D+ DI V+I Sbjct 4 FLQAIIDWLRAGYPEGVPESDYIPLLAVLRRRLSDDEVAEIASAV--YGSGDRTDIQVLI 61 Query 64 THFTDELPSPEDVERVRARLAAQGWP 89 T T+E+PS +DV RV+ RLA + WP Sbjct 62 TKVTNEMPSEQDVARVQERLAGREWP 87 >gi|326383021|ref|ZP_08204710.1| hypothetical protein SCNU_08791 [Gordonia neofelifaecis NRRL B-59395] gi|326198157|gb|EGD55342.1| hypothetical protein SCNU_08791 [Gordonia neofelifaecis NRRL B-59395] Length=115 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/92 (48%), Positives = 60/92 (66%), Gaps = 3/92 (3%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLG---DFDQIDIG 60 FL+ +V WLRAGYPEG+P +D + ALL R+L+ +E++ VA EL+ +ID+G Sbjct 6 FLSGVVRWLRAGYPEGVPNSDYLPLFALLRRQLTEEEIRQVALELVDTPPTEPISRIDVG 65 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 V I+ T ELP +D+ERVR L A WP DD Sbjct 66 VEISKVTQELPREQDIERVRQTLEAAEWPFDD 97 >gi|262201047|ref|YP_003272255.1| hypothetical protein Gbro_1053 [Gordonia bronchialis DSM 43247] gi|262084394|gb|ACY20362.1| hypothetical protein Gbro_1053 [Gordonia bronchialis DSM 43247] Length=125 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/95 (47%), Positives = 57/95 (60%), Gaps = 5/95 (5%) Query 3 RFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGD-----FDQI 57 +FL +V WLRAGYP G+P D ++ALL R+LS E ++V+ +L+R +I Sbjct 5 QFLKRVVEWLRAGYPNGVPQDDYIPLVALLRRQLSDAEAESVSTDLIRESPPPPERISKI 64 Query 58 DIGVVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 D GV IT T ELP D+ RVR L A GWP DD Sbjct 65 DAGVKITEITHELPHEADIARVRKHLEASGWPFDD 99 >gi|296138438|ref|YP_003645681.1| hypothetical protein Tpau_0705 [Tsukamurella paurometabola DSM 20162] gi|296026572|gb|ADG77342.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=114 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/98 (46%), Positives = 59/98 (61%), Gaps = 8/98 (8%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELM--------RLGDFD 55 F+ IV WLRAGYPEG+P D +LALL R+L+ +EVK V EL+ + Sbjct 7 FIAKIVDWLRAGYPEGVPSHDYQPLLALLDRQLTKEEVKEVTRELIDDAHLTPEGVEPIT 66 Query 56 QIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDV 93 +ID GV I+ T E+P +D+ RVR RL +GWP DD Sbjct 67 RIDAGVAISGHTREMPLEKDIARVRERLERKGWPFDDA 104 >gi|145220635|ref|YP_001131313.1| hypothetical protein Mflv_0029 [Mycobacterium gilvum PYR-GCK] gi|315442417|ref|YP_004075296.1| hypothetical protein Mspyr1_07610 [Mycobacterium sp. Spyr1] gi|145213121|gb|ABP42525.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315260720|gb|ADT97461.1| hypothetical protein Mspyr1_07610 [Mycobacterium sp. Spyr1] Length=99 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/87 (49%), Positives = 57/87 (66%), Gaps = 3/87 (3%) Query 7 SIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQI---DIGVVI 63 +++ WLR GYP GIP TD F +LALL R L+ DEV VA ++R D D + +I I Sbjct 8 NVLGWLRHGYPHGIPTTDYFPLLALLSRTLTEDEVVGVAQTVLRGTDSDTVTPQEIRAAI 67 Query 64 THFTDELPSPEDVERVRARLAAQGWPL 90 TD+ P+PE++ +V ARLA+ GWPL Sbjct 68 HLVTDKEPNPEEMHQVAARLASVGWPL 94 >gi|296138439|ref|YP_003645682.1| hypothetical protein Tpau_0706 [Tsukamurella paurometabola DSM 20162] gi|296026573|gb|ADG77343.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=104 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/91 (47%), Positives = 57/91 (63%), Gaps = 2/91 (2%) Query 2 NRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELM--RLGDFDQIDI 59 + LT ++ WLRAGYPEG+PP D F +LALL R LS +EV AV L+ R + + +I Sbjct 8 DNVLTQVLDWLRAGYPEGVPPKDYFPLLALLQRSLSEEEVNAVMGRLLAARPDEVHKDEI 67 Query 60 GVVITHFTDELPSPEDVERVRARLAAQGWPL 90 I T PS +D+ +V ++LAA GWPL Sbjct 68 EAAIAKVTQSQPSDDDLNQVASKLAAGGWPL 98 >gi|343926009|ref|ZP_08765524.1| hypothetical protein GOALK_050_03050 [Gordonia alkanivorans NBRC 16433] gi|343764360|dbj|GAA12450.1| hypothetical protein GOALK_050_03050 [Gordonia alkanivorans NBRC 16433] Length=107 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/94 (45%), Positives = 56/94 (60%), Gaps = 5/94 (5%) Query 3 RFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLG-----DFDQI 57 + L I+ WLR GYP+G+P D ++ALL R+LS DEV+ V++ L+R QI Sbjct 5 QLLYRIIEWLRTGYPDGVPQGDYIPLVALLRRQLSEDEVQEVSSRLIRQSPPPPEPISQI 64 Query 58 DIGVVITHFTDELPSPEDVERVRARLAAQGWPLD 91 D V IT T ELP +D+ RVR L + GWP D Sbjct 65 DAAVAITKVTRELPHEDDIARVRRHLESSGWPFD 98 >gi|118466725|ref|YP_881673.1| hypothetical protein MAV_2481 [Mycobacterium avium 104] gi|254775141|ref|ZP_05216657.1| hypothetical protein MaviaA2_10786 [Mycobacterium avium subsp. avium ATCC 25291] gi|118168012|gb|ABK68909.1| conserved hypothetical protein [Mycobacterium avium 104] Length=95 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 60/84 (72%), Gaps = 2/84 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELM--RLGDFDQIDIGV 61 ++TSIVA++RAGYP G+P T ++AL RRL HD++ A+A +L+ RL +DIGV Sbjct 6 WVTSIVAFVRAGYPAGMPATGHVPLVALAHRRLCHDDITAIATDLIARRLWPISSVDIGV 65 Query 62 VITHFTDELPSPEDVERVRARLAA 85 IT FT++LPSP+DV+ V R+ A Sbjct 66 EITRFTNQLPSPQDVDLVLRRVHA 89 >gi|229490285|ref|ZP_04384127.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229322817|gb|EEN88596.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=112 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/96 (45%), Positives = 56/96 (59%), Gaps = 11/96 (11%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMR-----------LG 52 L SI+ WLRAGYP G+P D ++ALL R+LS DE+ +A++L+ G Sbjct 6 LLASILGWLRAGYPNGVPEQDYVPLMALLRRQLSDDEIAVLADDLVAGFPLPVDPIDFPG 65 Query 53 DFDQIDIGVVITHFTDELPSPEDVERVRARLAAQGW 88 D IDIGV+IT TD++P DV RVR L GW Sbjct 66 SVDPIDIGVLITKVTDDIPHESDVARVREHLIRGGW 101 >gi|54027223|ref|YP_121465.1| hypothetical protein nfa52490 [Nocardia farcinica IFM 10152] gi|54018731|dbj|BAD60101.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=111 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/91 (49%), Positives = 53/91 (59%), Gaps = 3/91 (3%) Query 3 RFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQI---DI 59 + L I+ WLRAGYP+G+P +D A+ A+L R L+ EV VA EL+R I DI Sbjct 12 KVLGRILGWLRAGYPQGVPQSDYVALFAVLHRHLTDYEVVTVAEELVRDNPESTITHDDI 71 Query 60 GVVITHFTDELPSPEDVERVRARLAAQGWPL 90 I F E P P DV RV A LAA GWPL Sbjct 72 VAAIARFAKEQPDPHDVARVAAHLAAGGWPL 102 >gi|41407862|ref|NP_960698.1| hypothetical protein MAP1764 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396216|gb|AAS04081.1| hypothetical protein MAP_1764 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336457350|gb|EGO36362.1| Protein of unknown function (DUF3349) [Mycobacterium avium subsp. paratuberculosis S397] Length=95 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/84 (49%), Positives = 58/84 (70%), Gaps = 2/84 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELM--RLGDFDQIDIGV 61 ++TSIVA++RAGYP G+P T ++A RRL HD++ A+A +L+ RL +DIGV Sbjct 6 WVTSIVAFVRAGYPAGMPATGHVPLVASAHRRLCHDDITAIATDLIARRLWPISSVDIGV 65 Query 62 VITHFTDELPSPEDVERVRARLAA 85 IT FT++LPSP+DV V R+ A Sbjct 66 EITRFTNQLPSPQDVNLVLRRVHA 89 >gi|296393708|ref|YP_003658592.1| hypothetical protein Srot_1292 [Segniliparus rotundus DSM 44985] gi|296180855|gb|ADG97761.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=107 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/95 (44%), Positives = 58/95 (62%), Gaps = 7/95 (7%) Query 5 LTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANEL-------MRLGDFDQI 57 L S++ WL AGYPEG+P D ++ALL R+LS ++V+ V N L + G D+ Sbjct 7 LASVLRWLTAGYPEGVPAQDRIPLVALLRRKLSENQVQEVINALTAPDSGVLDDGVIDKN 66 Query 58 DIGVVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 +I I H + + ED+ERV ARLAA GWPL++ Sbjct 67 EISTSIHHVKGDEATQEDIERVAARLAASGWPLEE 101 >gi|111220916|ref|YP_711710.1| hypothetical protein FRAAL1463 [Frankia alni ACN14a] gi|111148448|emb|CAJ60119.1| conserved hypothetical protein [Frankia alni ACN14a] Length=100 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/88 (48%), Positives = 53/88 (61%), Gaps = 1/88 (1%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGD-FDQIDIGVV 62 L SI+ WLRAGYP+G+P D + ALL R+L+ DEV A+A+ L GD + I Sbjct 1 MLASIIQWLRAGYPDGVPERDYLPLFALLRRKLTGDEVTAIADALTTNGDSASALAIRTA 60 Query 63 ITHFTDELPSPEDVERVRARLAAQGWPL 90 I T + P D+ RV ARLAA GWPL Sbjct 61 IADVTHDTPLEGDIARVSARLAAGGWPL 88 >gi|296393030|ref|YP_003657914.1| hypothetical protein Srot_0601 [Segniliparus rotundus DSM 44985] gi|296180177|gb|ADG97083.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=103 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/91 (49%), Positives = 57/91 (63%), Gaps = 4/91 (4%) Query 5 LTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVA---NELMRLGDFDQIDIGV 61 L +IV WLRA YP+GIP D + AL+ R+LS E++ +A NE R G IDIGV Sbjct 7 LRAIVQWLRAAYPQGIPEQDYVPLFALMPRKLSEGEIRQLAETLNENGR-GAASSIDIGV 65 Query 62 VITHFTDELPSPEDVERVRARLAAQGWPLDD 92 +IT T+ELP EDV+R+R RL W +D Sbjct 66 LITKITNELPRAEDVDRIRQRLGDLVWEDED 96 >gi|317507991|ref|ZP_07965683.1| melanoma-associated antigen E1 [Segniliparus rugosus ATCC BAA-974] gi|316253725|gb|EFV13103.1| melanoma-associated antigen E1 [Segniliparus rugosus ATCC BAA-974] Length=104 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/87 (53%), Positives = 54/87 (63%), Gaps = 3/87 (3%) Query 5 LTSIVAWLRAGYPEG-IPPTDSFAVLALLCRRLSHDEVKAVANELMRL--GDFDQIDIGV 61 L +IV WLRAGYP G IP D V ALL R+LS E++ +A+ L G IDIGV Sbjct 7 LKAIVKWLRAGYPTGTIPEQDYVPVFALLPRKLSEQEIRELADLLNETTHGAASPIDIGV 66 Query 62 VITHFTDELPSPEDVERVRARLAAQGW 88 IT T+ELP EDVERVR+RL W Sbjct 67 FITKITNELPRAEDVERVRSRLGDLVW 93 >gi|342859731|ref|ZP_08716384.1| hypothetical protein MCOL_12658 [Mycobacterium colombiense CECT 3035] gi|342132863|gb|EGT86083.1| hypothetical protein MCOL_12658 [Mycobacterium colombiense CECT 3035] Length=95 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/87 (45%), Positives = 62/87 (72%), Gaps = 2/87 (2%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELM--RLGDFDQID 58 ++ ++TSIVA++RAGYP G+P T ++AL RRL D++ A+A++L+ RL +D Sbjct 3 LSHWVTSIVAFVRAGYPSGMPATGYVPLVALTRRRLCDDDITAIASDLIARRLWPIGSVD 62 Query 59 IGVVITHFTDELPSPEDVERVRARLAA 85 +GV IT T++LPSP+DV R++ R+ A Sbjct 63 VGVEITRITNQLPSPDDVARIQRRVHA 89 >gi|226307120|ref|YP_002767080.1| hypothetical protein RER_36330 [Rhodococcus erythropolis PR4] gi|226186237|dbj|BAH34341.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=108 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/95 (47%), Positives = 58/95 (62%), Gaps = 8/95 (8%) Query 7 SIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVK--AVANELMRLGDF--DQI----D 58 SI+ WLRAGYPEGIPP D ++ALL R+LS +++ A+ L L D DQ+ + Sbjct 11 SILEWLRAGYPEGIPPKDRIPLVALLRRKLSDAQIRDIAIGAALAELSDVNSDQVISSDE 70 Query 59 IGVVITHFTDELPSPEDVERVRARLAAQGWPLDDV 93 I I T + PS ED+ RV + LAA GWPL D+ Sbjct 71 ISAQIADLTSQTPSDEDIARVASVLAAAGWPLADL 105 >gi|226307121|ref|YP_002767081.1| hypothetical protein RER_36340 [Rhodococcus erythropolis PR4] gi|226186238|dbj|BAH34342.1| hypothetical protein RER_36340 [Rhodococcus erythropolis PR4] Length=121 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/108 (41%), Positives = 58/108 (54%), Gaps = 20/108 (18%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMR------------- 50 L SI+ WLRAGYP G+P D ++ALL R+LS DE+ +A++L+ Sbjct 6 LLASILGWLRAGYPNGVPEQDYVPLMALLRRQLSDDEIAVLADDLVADFPVPVDPIDFPG 65 Query 51 -------LGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLD 91 G D IDIGV+IT TD++P DV RVR L GW +D Sbjct 66 SVDPIDFPGSVDPIDIGVLITKVTDDIPHESDVARVREHLIRGGWQID 113 >gi|118473520|ref|YP_885462.1| hypothetical protein MSMEG_1066 [Mycobacterium smegmatis str. MC2 155] gi|118174807|gb|ABK75703.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=103 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/91 (42%), Positives = 55/91 (61%), Gaps = 4/91 (4%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQI----DI 59 F+ +++ WL GYPEG+PP D FA+LALL R L+ DEV A ++R D DI Sbjct 8 FMDNVLGWLHKGYPEGVPPKDYFALLALLKRSLTEDEVVRAAQAILRSTDGQSPVTDDDI 67 Query 60 GVVITHFTDELPSPEDVERVRARLAAQGWPL 90 + ++ P+ E++ +V ARLA+ GWPL Sbjct 68 RNAVHQIIEKEPTAEEINQVAARLASVGWPL 98 >gi|229490320|ref|ZP_04384162.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229322852|gb|EEN88631.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=108 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/95 (47%), Positives = 58/95 (62%), Gaps = 8/95 (8%) Query 7 SIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVK--AVANELMRLGDF--DQI----D 58 SI+ WLRAGYPEGIPP D ++ALL R+LS +++ A+ L L D DQ+ + Sbjct 11 SILDWLRAGYPEGIPPKDRIPLVALLRRKLSDAQIRDIAIGAALAELSDVNSDQVISSDE 70 Query 59 IGVVITHFTDELPSPEDVERVRARLAAQGWPLDDV 93 I I T + PS ED+ RV + LAA GWPL D+ Sbjct 71 ISAQIADLTSQTPSDEDIARVASVLAAAGWPLADL 105 >gi|331699574|ref|YP_004335813.1| hypothetical protein Psed_5836 [Pseudonocardia dioxanivorans CB1190] gi|326954263|gb|AEA27960.1| hypothetical protein Psed_5836 [Pseudonocardia dioxanivorans CB1190] Length=98 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/92 (45%), Positives = 55/92 (60%), Gaps = 1/92 (1%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQID-IGVV 62 FL SI+ W+RAGYPEG+P D ++ALL +L++ +V AVA+ GD D I Sbjct 6 FLQSIIDWVRAGYPEGLPQQDYLPLVALLGHQLTNADVTAVADHFAETGDPATADAIREA 65 Query 63 ITHFTDELPSPEDVERVRARLAAQGWPLDDVR 94 + +P ED+ RVRARLAA GWPL + Sbjct 66 CATISHAVPQDEDIARVRARLAAGGWPLAPIH 97 >gi|306440738|pdb|3OL3|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Smegamtis, An Ortholog Of Rv0543c, Iodide Phased gi|306440739|pdb|3OL3|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Smegamtis, An Ortholog Of Rv0543c, Iodide Phased gi|306440740|pdb|3OL4|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Smegmatis, An Ortholog Of Rv0543c gi|306440741|pdb|3OL4|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Smegmatis, An Ortholog Of Rv0543c Length=107 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/91 (42%), Positives = 55/91 (61%), Gaps = 4/91 (4%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQI----DI 59 F+ +++ WL GYPEG+PP D FA+LALL R L+ DEV A ++R D DI Sbjct 12 FMDNVLGWLHKGYPEGVPPKDYFALLALLKRSLTEDEVVRAAQAILRSTDGQSPVTDDDI 71 Query 60 GVVITHFTDELPSPEDVERVRARLAAQGWPL 90 + ++ P+ E++ +V ARLA+ GWPL Sbjct 72 RNAVHQIIEKEPTAEEINQVAARLASVGWPL 102 >gi|309811066|ref|ZP_07704864.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308435030|gb|EFP58864.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length=97 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/94 (45%), Positives = 58/94 (62%), Gaps = 2/94 (2%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLG--DFDQID 58 +N L IV WLR YP G+P D +LAL+ RRLS +E+ + N L+ G D++D Sbjct 1 MNPSLERIVNWLRVSYPTGVPERDYQPLLALMRRRLSPEEMHELGNHLVADGLVPADRVD 60 Query 59 IGVVITHFTDELPSPEDVERVRARLAAQGWPLDD 92 +GV IT T ELPSP++++RV L G+PL D Sbjct 61 VGVGITKVTQELPSPQEIDRVLDHLHECGFPLHD 94 >gi|108797709|ref|YP_637906.1| hypothetical protein Mmcs_0730 [Mycobacterium sp. MCS] gi|119866798|ref|YP_936750.1| hypothetical protein Mkms_0744 [Mycobacterium sp. KMS] gi|126433335|ref|YP_001069026.1| hypothetical protein Mjls_0724 [Mycobacterium sp. JLS] gi|108768128|gb|ABG06850.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692887|gb|ABL89960.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126233135|gb|ABN96535.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=102 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/90 (42%), Positives = 55/90 (62%), Gaps = 3/90 (3%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQI---DIG 60 + ++ WLR GYP+G+PP D F +LALL R L+ +EV A ++R D D + +I Sbjct 8 VMDKVLTWLRDGYPQGVPPKDYFPLLALLKRSLTEEEVVRAAQSILRSTDSDVVTEDEIR 67 Query 61 VVITHFTDELPSPEDVERVRARLAAQGWPL 90 + + P+PE+V +V ARLA+ GWPL Sbjct 68 TAVHEVIAKEPNPEEVHQVAARLASVGWPL 97 >gi|296165103|ref|ZP_06847654.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899515|gb|EFG78970.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=95 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/82 (50%), Positives = 54/82 (66%), Gaps = 2/82 (2%) Query 4 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMR--LGDFDQIDIGV 61 +++SIVA++RAGYP G+P T + AL RRL DE+ A+A++LMR +DIGV Sbjct 6 WVSSIVAFVRAGYPAGMPTTGYAPLAALARRRLCDDEISAIASKLMRRQFWPISSVDIGV 65 Query 62 VITHFTDELPSPEDVERVRARL 83 IT T+ LP P DVERV RL Sbjct 66 EITRVTNHLPLPADVERVEVRL 87 >gi|254822131|ref|ZP_05227132.1| hypothetical protein MintA_19509 [Mycobacterium intracellulare ATCC 13950] Length=95 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/85 (46%), Positives = 61/85 (72%), Gaps = 2/85 (2%) Query 1 VNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELM--RLGDFDQID 58 ++ ++TSIVA++RAGYP G+P ++AL RRL ++ A+A++L+ R+ + ID Sbjct 3 LSHWVTSIVAFVRAGYPTGMPAPGHVPLVALTRRRLCGHDISAIASDLIARRVWPTNPID 62 Query 59 IGVVITHFTDELPSPEDVERVRARL 83 IGV IT T++LP+PEDVERV+ R+ Sbjct 63 IGVEITRITNQLPTPEDVERVQRRV 87 Lambda K H 0.322 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129239199826 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40