BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0544c Length=92 Score E Sequences producing significant alignments: (Bits) Value gi|15607684|ref|NP_215058.1| transmembrane protein [Mycobacteriu... 175 2e-42 gi|41410138|ref|NP_962974.1| hypothetical protein MAP4040c [Myco... 121 4e-26 gi|118462786|ref|YP_883729.1| hypothetical protein MAV_4600 [Myc... 120 8e-26 gi|254821893|ref|ZP_05226894.1| hypothetical protein MintA_18307... 119 2e-25 gi|296168307|ref|ZP_06850231.1| conserved hypothetical protein [... 117 4e-25 gi|15828207|ref|NP_302470.1| hypothetical protein ML2259 [Mycoba... 117 5e-25 gi|240169224|ref|ZP_04747883.1| hypothetical protein MkanA1_0791... 113 1e-23 gi|118616447|ref|YP_904779.1| hypothetical protein MUL_0643 [Myc... 112 2e-23 gi|333989177|ref|YP_004521791.1| transmembrane protein [Mycobact... 77.8 4e-13 gi|342858947|ref|ZP_08715601.1| hypothetical protein MCOL_08723 ... 72.0 3e-11 gi|184201951|ref|YP_001856158.1| hypothetical protein KRH_23050 ... 55.1 3e-06 gi|262201049|ref|YP_003272257.1| hypothetical protein Gbro_1055 ... 50.8 6e-05 gi|699353|gb|AAA63113.1| u296v [Mycobacterium leprae] 50.1 1e-04 gi|237786443|ref|YP_002907148.1| hypothetical protein ckrop_1890... 48.9 3e-04 gi|108797708|ref|YP_637905.1| hypothetical protein Mmcs_0729 [My... 48.5 3e-04 gi|343926011|ref|ZP_08765526.1| hypothetical protein GOALK_050_0... 48.1 5e-04 gi|54027224|ref|YP_121466.1| hypothetical protein nfa52500 [Noca... 45.4 0.003 gi|169631028|ref|YP_001704677.1| hypothetical protein MAB_3949c ... 44.7 0.004 gi|226361096|ref|YP_002778874.1| hypothetical protein ROP_16820 ... 44.7 0.005 gi|226307119|ref|YP_002767079.1| hypothetical protein RER_36320 ... 43.1 0.013 gi|227876400|ref|ZP_03994512.1| conserved hypothetical protein [... 42.7 0.016 gi|118473717|ref|YP_885461.1| hypothetical protein MSMEG_1065 [M... 42.0 0.026 gi|111220917|ref|YP_711711.1| hypothetical protein FRAAL1464 [Fr... 40.8 0.061 gi|120401955|ref|YP_951784.1| hypothetical protein Mvan_0940 [My... 40.8 0.067 gi|331699573|ref|YP_004335812.1| hypothetical protein Psed_5835 ... 40.8 0.073 gi|111019001|ref|YP_701973.1| hypothetical protein RHA1_ro02008 ... 40.0 0.10 gi|84498496|ref|ZP_00997266.1| hypothetical protein JNB_16599 [J... 39.7 0.14 gi|334564875|ref|ZP_08517866.1| hypothetical protein CbovD2_0990... 39.7 0.16 gi|227503048|ref|ZP_03933097.1| conserved hypothetical protein [... 39.3 0.19 gi|256394584|ref|YP_003116148.1| hypothetical protein Caci_5448 ... 38.5 0.37 gi|317507992|ref|ZP_07965684.1| hypothetical protein HMPREF9336_... 37.4 0.71 gi|260579536|ref|ZP_05847407.1| conserved hypothetical protein [... 37.4 0.75 gi|25027029|ref|NP_737083.1| hypothetical protein CE0473 [Coryne... 37.4 0.83 gi|68537175|ref|YP_251880.1| hypothetical protein jk2080 [Coryne... 36.6 1.2 gi|300742648|ref|ZP_07072669.1| hypothetical membrane protein [R... 35.8 1.9 gi|296138440|ref|YP_003645683.1| hypothetical protein Tpau_0707 ... 35.4 2.5 gi|340795661|ref|YP_004761124.1| hypothetical protein CVAR_2712 ... 35.0 3.5 gi|326383019|ref|ZP_08204708.1| hypothetical protein SCNU_08781 ... 35.0 4.1 gi|296393031|ref|YP_003657915.1| hypothetical protein Srot_0602 ... 35.0 4.1 gi|58257746|dbj|BAA02806.3| KIAA0018 protein [Homo sapiens] 34.3 5.7 gi|83594642|ref|YP_428394.1| resolvase-like protein [Rhodospiril... 34.3 7.1 gi|283457098|ref|YP_003361661.1| hypothetical protein RMDY18_000... 33.9 7.1 gi|255326473|ref|ZP_05367555.1| conserved hypothetical protein [... 33.9 7.6 gi|255325484|ref|ZP_05366586.1| conserved hypothetical protein [... 33.9 7.8 gi|344171529|emb|CCA84144.1| NAD(P)H-dependent FMN reductase, su... 33.9 8.0 gi|309811072|ref|ZP_07704870.1| conserved hypothetical protein [... 33.9 9.0 >gi|15607684|ref|NP_215058.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15839940|ref|NP_334977.1| hypothetical protein MT0569 [Mycobacterium tuberculosis CDC1551] gi|31791726|ref|NP_854219.1| transmembrane protein [Mycobacterium bovis AF2122/97] 78 more sequence titles Length=92 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 91/92 (99%), Positives = 92/92 (100%), Gaps = 0/92 (0%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFA 60 +SAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFA Sbjct 1 MSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFA 60 Query 61 LVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 LVLAVVIIGVLYIARDFIAHHTGWAFLGATPK Sbjct 61 LVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 >gi|41410138|ref|NP_962974.1| hypothetical protein MAP4040c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398971|gb|AAS06590.1| hypothetical protein MAP_4040c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460483|gb|EGO39378.1| hypothetical protein MAPs_40000 [Mycobacterium avium subsp. paratuberculosis S397] Length=102 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/96 (65%), Positives = 77/96 (81%), Gaps = 7/96 (7%) Query 4 WFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAG------DGADA-TARRRPLLVAVSW 56 WFNY A+LKIL+F++LAGA LPGLFA+G+RLQ+AG DGAD ARR PLL ++W Sbjct 7 WFNYQASLKILLFAMLAGAALPGLFALGIRLQSAGAGDITLDGADGGPARRNPLLTGLAW 66 Query 57 AIFALVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 AI+ALV+AV+ + +LYIARDFIAHHTG+ FLGA K Sbjct 67 AIYALVIAVITLALLYIARDFIAHHTGYPFLGAKAK 102 >gi|118462786|ref|YP_883729.1| hypothetical protein MAV_4600 [Mycobacterium avium 104] gi|254777033|ref|ZP_05218549.1| hypothetical protein MaviaA2_20529 [Mycobacterium avium subsp. avium ATCC 25291] gi|118164073|gb|ABK64970.1| conserved hypothetical protein [Mycobacterium avium 104] Length=102 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 61/99 (62%), Positives = 78/99 (79%), Gaps = 7/99 (7%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAG------DGADA-TARRRPLLVA 53 + WFNY A+LKIL+F++LAGA LPGLFA+G+RLQ+AG DGA+ ARR PLL Sbjct 4 IGDWFNYQASLKILLFAMLAGAALPGLFALGIRLQSAGAGDITLDGAEGGPARRNPLLTG 63 Query 54 VSWAIFALVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 ++WAI+ALV+AV+ + +LYIARDFIAHHTG+ FLGA K Sbjct 64 LAWAIYALVIAVITLALLYIARDFIAHHTGYPFLGAKAK 102 >gi|254821893|ref|ZP_05226894.1| hypothetical protein MintA_18307 [Mycobacterium intracellulare ATCC 13950] Length=103 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/100 (59%), Positives = 78/100 (78%), Gaps = 8/100 (8%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAG------DGAD--ATARRRPLLV 52 + WFNY A+LKIL+F++LAGA LPGLFA+G+RLQ+AG DGA + RR P+L Sbjct 4 IGDWFNYQASLKILVFAMLAGAALPGLFALGIRLQSAGAGDISLDGASNGSAPRRNPVLT 63 Query 53 AVSWAIFALVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 A++W+I+ALV+AV+ + +LYIARDFIAHHTG+ LGA PK Sbjct 64 ALAWSIYALVIAVIALALLYIARDFIAHHTGYPLLGAKPK 103 >gi|296168307|ref|ZP_06850231.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896738|gb|EFG76371.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=95 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 56/91 (62%), Positives = 72/91 (80%), Gaps = 0/91 (0%) Query 2 SAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFAL 61 S WFNY A+LKIL+FS+LAGA LPGLFA+G+R A G G + ++ P L+A++W I+A+ Sbjct 5 SDWFNYQASLKILLFSMLAGAALPGLFALGLRFHAVGAGQGGSQQKNPALLALAWLIYAV 64 Query 62 VLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 VL V+ +LYI+RDFIAHHTG AFLGATPK Sbjct 65 VLVVIAFALLYISRDFIAHHTGTAFLGATPK 95 >gi|15828207|ref|NP_302470.1| hypothetical protein ML2259 [Mycobacterium leprae TN] gi|221230684|ref|YP_002504100.1| hypothetical protein MLBr_02259 [Mycobacterium leprae Br4923] gi|13093761|emb|CAC31215.1| possible membrane protein [Mycobacterium leprae] gi|219933791|emb|CAR72357.1| possible membrane protein [Mycobacterium leprae Br4923] Length=96 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/96 (65%), Positives = 76/96 (80%), Gaps = 5/96 (5%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQA--AGDGA--DATARRRPLLVAVSW 56 +S WFNY ATLKIL+FS LAGA LPGLFA+G+RLQ AGD + +AT R+P+LV ++W Sbjct 1 MSPWFNYEATLKILLFSTLAGAALPGLFALGIRLQVNDAGDASTNNATPHRKPILVTLAW 60 Query 57 AIFALVLAVVIIGVLYI-ARDFIAHHTGWAFLGATP 91 I+ALVL VVI+GVLYI +RDFIAHHT + FLG P Sbjct 61 VIYALVLMVVILGVLYIVSRDFIAHHTHYPFLGIKP 96 >gi|240169224|ref|ZP_04747883.1| hypothetical protein MkanA1_07919 [Mycobacterium kansasii ATCC 12478] Length=94 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/92 (75%), Positives = 75/92 (82%), Gaps = 2/92 (2%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGA--DATARRRPLLVAVSWAI 58 ++ WFNY AT KILIFSLL GA LP LFA+GVRLQAAG GA D TA RRP+LVA+ WAI Sbjct 1 MNHWFNYEATAKILIFSLLLGAGLPALFALGVRLQAAGAGAIGDHTAPRRPVLVALGWAI 60 Query 59 FALVLAVVIIGVLYIARDFIAHHTGWAFLGAT 90 F LVLAVV+IGVLYIARDFIAHH GW LGA Sbjct 61 FGLVLAVVVIGVLYIARDFIAHHIGWHLLGAK 92 >gi|118616447|ref|YP_904779.1| hypothetical protein MUL_0643 [Mycobacterium ulcerans Agy99] gi|183980911|ref|YP_001849202.1| hypothetical protein MMAR_0890 [Mycobacterium marinum M] gi|118568557|gb|ABL03308.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] gi|183174237|gb|ACC39347.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=94 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/94 (65%), Positives = 69/94 (74%), Gaps = 2/94 (2%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATAR--RRPLLVAVSWAI 58 ++ WFNY AT KILIFS+LAGA LP LFAVGVRLQA T RR +L A+ W I Sbjct 1 MNHWFNYEATSKILIFSVLAGAGLPALFAVGVRLQADSGQITGTHAPLRRTVLTALGWMI 60 Query 59 FALVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 FA++LAVV+IGVLYIARDFIAHH GW LGA K Sbjct 61 FAIILAVVVIGVLYIARDFIAHHIGWHILGAKTK 94 >gi|333989177|ref|YP_004521791.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333485145|gb|AEF34537.1| transmembrane protein [Mycobacterium sp. JDM601] Length=93 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/93 (60%), Positives = 67/93 (73%), Gaps = 1/93 (1%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQ-AAGDGADATARRRPLLVAVSWAIF 59 ++ WFNY AT KIL+F LL GA LP LFAV R+ AA G+ RRPLL+AVSWAIF Sbjct 1 MNEWFNYAATGKILVFGLLVGAALPALFAVATRINVAANGGSGGVGVRRPLLIAVSWAIF 60 Query 60 ALVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 LVL V ++GVL++ARDF+ HH GW LGA P+ Sbjct 61 LLVLVVAVVGVLFVARDFLGHHFGWYLLGAKPQ 93 >gi|342858947|ref|ZP_08715601.1| hypothetical protein MCOL_08723 [Mycobacterium colombiense CECT 3035] gi|342133188|gb|EGT86391.1| hypothetical protein MCOL_08723 [Mycobacterium colombiense CECT 3035] Length=70 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 4/70 (5%) Query 27 LFAVGVRLQAAGDGA----DATARRRPLLVAVSWAIFALVLAVVIIGVLYIARDFIAHHT 82 +FA+G+R QA G G ++ ++ P+L+A +WAIFA+V V+ + YI+RDFIAH T Sbjct 1 MFALGLRFQAIGAGEVGTDGSSPQKNPMLLAFAWAIFAVVFVVIAFALAYISRDFIAHQT 60 Query 83 GWAFLGATPK 92 G AFLGA PK Sbjct 61 GTAFLGAKPK 70 >gi|184201951|ref|YP_001856158.1| hypothetical protein KRH_23050 [Kocuria rhizophila DC2201] gi|183582181|dbj|BAG30652.1| hypothetical protein [Kocuria rhizophila DC2201] Length=90 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/83 (43%), Positives = 48/83 (58%), Gaps = 3/83 (3%) Query 9 ATLKILIFSLLAGALLPGLFAVGVRL---QAAGDGADATARRRPLLVAVSWAIFALVLAV 65 + L +L+ L GA LP LF VG+ L G D ARR+PL +A + FA+VLA Sbjct 8 SVLAVLLAGLCFGAGLPALFTVGITLWSRATPEPGPDGVARRKPLALAGAVLCFAIVLAA 67 Query 66 VIIGVLYIARDFIAHHTGWAFLG 88 V+IGVL+I R + H+ G + G Sbjct 68 VVIGVLWITRKSLDHYLGISVFG 90 >gi|262201049|ref|YP_003272257.1| hypothetical protein Gbro_1055 [Gordonia bronchialis DSM 43247] gi|262084396|gb|ACY20364.1| hypothetical protein Gbro_1055 [Gordonia bronchialis DSM 43247] Length=93 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/75 (42%), Positives = 46/75 (62%), Gaps = 4/75 (5%) Query 12 KILIFSLLAGALLPGLFAVGVRLQAAGDG---ADAT-ARRRPLLVAVSWAIFALVLAVVI 67 K+L+ L+ GA LP LFA G+RL + G+G AD T + P L S+ +FA V V++ Sbjct 9 KVLMVGLVLGAGLPALFAYGLRLHSVGNGDENADGTLSAPHPALKVASYLVFAFVALVIV 68 Query 68 IGVLYIARDFIAHHT 82 G+L+I R I ++T Sbjct 69 TGILWITRQTIYYYT 83 >gi|699353|gb|AAA63113.1| u296v [Mycobacterium leprae] Length=36 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/35 (72%), Positives = 29/35 (83%), Gaps = 1/35 (2%) Query 58 IFALVLAVVIIGVLYI-ARDFIAHHTGWAFLGATP 91 I+ALVL VVI+GVLYI +RDFIAHHT + FLG P Sbjct 2 IYALVLMVVILGVLYIVSRDFIAHHTHYPFLGIKP 36 >gi|237786443|ref|YP_002907148.1| hypothetical protein ckrop_1890 [Corynebacterium kroppenstedtii DSM 44385] gi|237759355|gb|ACR18605.1| putative secreted protein [Corynebacterium kroppenstedtii DSM 44385] Length=88 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/66 (44%), Positives = 38/66 (58%), Gaps = 2/66 (3%) Query 25 PGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFALVLAVVIIGVLYIARDFIAHHTGW 84 P LF++GVRL AAG + +A W I+AL LAV+I GVL+I IAH+TG Sbjct 22 PTLFSLGVRLDAAGSAEGQHTKGISHFLA--WVIYALCLAVIIAGVLWITNATIAHYTGI 79 Query 85 AFLGAT 90 G + Sbjct 80 NIYGTS 85 >gi|108797708|ref|YP_637905.1| hypothetical protein Mmcs_0729 [Mycobacterium sp. MCS] gi|119866797|ref|YP_936749.1| hypothetical protein Mkms_0743 [Mycobacterium sp. KMS] gi|126433334|ref|YP_001069025.1| hypothetical protein Mjls_0723 [Mycobacterium sp. JLS] gi|108768127|gb|ABG06849.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692886|gb|ABL89959.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126233134|gb|ABN96534.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=92 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/82 (38%), Positives = 47/82 (58%), Gaps = 4/82 (4%) Query 6 NYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDG---ADATAR-RRPLLVAVSWAIFAL 61 N + L++L+ L+ GA LP LFA G+ ++G G AD R P L + A+F + Sbjct 3 NLESILRVLVVGLILGAGLPALFACGLVAYSSGAGTPDADGVTRAPNPALKYLGVALFTI 62 Query 62 VLAVVIIGVLYIARDFIAHHTG 83 V AV+++G+L+I R I H G Sbjct 63 VAAVILVGLLWITRSTIEHQFG 84 >gi|343926011|ref|ZP_08765526.1| hypothetical protein GOALK_050_03070 [Gordonia alkanivorans NBRC 16433] gi|343764362|dbj|GAA12452.1| hypothetical protein GOALK_050_03070 [Gordonia alkanivorans NBRC 16433] Length=92 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/79 (37%), Positives = 45/79 (57%), Gaps = 3/79 (3%) Query 8 TATLKILIFSLLAGALLPGLFAVGVRLQAAGDGA---DATARRRPLLVAVSWAIFALVLA 64 A K+L+ L+ GA LP LFAVG+R+ G + + P + +S+AIFA+V Sbjct 5 EAIAKVLVVGLIFGAGLPALFAVGLRVHEQGSDEVIDGSVIKGNPAMRVLSYAIFAVVAL 64 Query 65 VVIIGVLYIARDFIAHHTG 83 V++ +L+I R + HTG Sbjct 65 VILTALLWITRQTLYFHTG 83 >gi|54027224|ref|YP_121466.1| hypothetical protein nfa52500 [Nocardia farcinica IFM 10152] gi|54018732|dbj|BAD60102.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=93 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/81 (36%), Positives = 49/81 (61%), Gaps = 3/81 (3%) Query 6 NYTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATA---RRRPLLVAVSWAIFALV 62 N +A ++++ +L+ GA LP +FA+GVR +A DA RR + A ++ FAL+ Sbjct 7 NLSALWQVVVAALVLGAGLPIVFALGVRWWSAAATVDAEGGITRRNHVAAAGAYLCFALI 66 Query 63 LAVVIIGVLYIARDFIAHHTG 83 +A ++ G+LY A+ F+A G Sbjct 67 VAAIVTGILYTAKAFLAARFG 87 >gi|169631028|ref|YP_001704677.1| hypothetical protein MAB_3949c [Mycobacterium abscessus ATCC 19977] gi|169242995|emb|CAM64023.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=93 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/87 (38%), Positives = 48/87 (56%), Gaps = 5/87 (5%) Query 5 FNYTATL-KILIFSLLAGALLPGLFAVGVRLQAAGDGA---DATA-RRRPLLVAVSWAIF 59 NY + K+L+ L+ GA LP +FA G+ ++G G D T P + + A+F Sbjct 1 MNYLEAIGKVLVVGLILGAGLPAVFAAGLVAYSSGAGGTHDDGTVVAPNPAVKFLGLALF 60 Query 60 ALVLAVVIIGVLYIARDFIAHHTGWAF 86 LV AVV++ +L+I R I HHTG F Sbjct 61 TLVGAVVVLALLWITRTTIIHHTGVDF 87 >gi|226361096|ref|YP_002778874.1| hypothetical protein ROP_16820 [Rhodococcus opacus B4] gi|226239581|dbj|BAH49929.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=88 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/72 (35%), Positives = 42/72 (59%), Gaps = 0/72 (0%) Query 12 KILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFALVLAVVIIGVL 71 ++++ LL GA LP +FA+G+R D + T++ +WA FA+VL +I G+L Sbjct 13 QVVLVGLLFGAGLPAIFALGLRSLGGADTGEGTSQPTVAGRIGAWACFAVVLIAIITGIL 72 Query 72 YIARDFIAHHTG 83 + +DF+A G Sbjct 73 LLMQDFLASSFG 84 >gi|226307119|ref|YP_002767079.1| hypothetical protein RER_36320 [Rhodococcus erythropolis PR4] gi|229490308|ref|ZP_04384150.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226186236|dbj|BAH34340.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229322840|gb|EEN88619.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=93 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/64 (36%), Positives = 39/64 (61%), Gaps = 5/64 (7%) Query 25 PGLFAVGVR-----LQAAGDGADATARRRPLLVAVSWAIFALVLAVVIIGVLYIARDFIA 79 P +FA+G++ + +G G+ A A R PL VA + FA+VL ++ G+L+I + F++ Sbjct 26 PAIFAIGLKSLDAGQRGSGGGSTAVAARSPLAVAGAVVCFAVVLIAIVTGILFIMQGFLS 85 Query 80 HHTG 83 H G Sbjct 86 HTFG 89 >gi|227876400|ref|ZP_03994512.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269975964|ref|ZP_06182968.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|306817292|ref|ZP_07451038.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700415|ref|ZP_07637454.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|227842941|gb|EEJ53138.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269935792|gb|EEZ92322.1| conserved hypothetical protein [Mobiluncus mulieris 28-1] gi|304649972|gb|EFM47251.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614400|gb|EFN93630.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length=100 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/89 (31%), Positives = 51/89 (58%), Gaps = 8/89 (8%) Query 8 TATLKILIFSLLAGALLPGLFAVGVRLQA-------AGDGADATARRRPLLVAVSWAIFA 60 A L++ +L+ GA +P LFA+G+R A +G D T ++ V W ++A Sbjct 8 EAILRVAALALVFGAGVPTLFALGMRAHAGRAIRDESGTVVDDT-EPSSVMKLVGWLVYA 66 Query 61 LVLAVVIIGVLYIARDFIAHHTGWAFLGA 89 ++ V+++G++++A+D I +TGW G+ Sbjct 67 VLAVVILLGIVWLAKDSIGFYTGWHPFGS 95 >gi|118473717|ref|YP_885461.1| hypothetical protein MSMEG_1065 [Mycobacterium smegmatis str. MC2 155] gi|118175004|gb|ABK75900.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=92 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/86 (35%), Positives = 45/86 (53%), Gaps = 2/86 (2%) Query 9 ATLKILIFSLLAGALLPGLFAVGVR--LQAAGDGADATARRRPLLVAVSWAIFALVLAVV 66 + LK+L+ L+ GA LP LFA G+ D A R P++ + A+F V AV+ Sbjct 6 SILKVLVVGLILGAGLPALFATGLLAFAGTDADADGTAAARNPVMKFLGLALFVFVGAVI 65 Query 67 IIGVLYIARDFIAHHTGWAFLGATPK 92 ++ +L+I R I HHTG P+ Sbjct 66 LVAILWITRGTIIHHTGVDLFPFLPR 91 >gi|111220917|ref|YP_711711.1| hypothetical protein FRAAL1464 [Frankia alni ACN14a] gi|111148449|emb|CAJ60120.1| putative membrane protein [Frankia alni ACN14a] Length=96 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 31/83 (38%), Positives = 42/83 (51%), Gaps = 10/83 (12%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVR---LQAAGD-------GADATARRRPL 50 + +W + A KI++ LLAGA LP LFAVG+R L G G D PL Sbjct 10 MDSWIDLDALWKIVVIGLLAGAGLPALFAVGLRAVSLPGRGGVPAVDEAGGDRVIGTNPL 69 Query 51 LVAVSWAIFALVLAVVIIGVLYI 73 +A A FA+VLA + G+ + Sbjct 70 GIAAGAACFAVVLAAIGWGIYSV 92 >gi|120401955|ref|YP_951784.1| hypothetical protein Mvan_0940 [Mycobacterium vanbaalenii PYR-1] gi|119954773|gb|ABM11778.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=95 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 35/93 (38%), Positives = 46/93 (50%), Gaps = 6/93 (6%) Query 6 NYTAT-LKILIFSLLAGALLPGLFAVGV---RLQAAGDGADATARRRP--LLVAVSWAIF 59 NY + LK+L L+ GA LP +FA+G+ A DG D TA P L + +F Sbjct 2 NYVESILKVLGIGLILGAGLPAVFALGLVAFSRGAGSDGTDGTAAATPNAALKYLGVLLF 61 Query 60 ALVLAVVIIGVLYIARDFIAHHTGWAFLGATPK 92 V V++ VL+I R I HHTG PK Sbjct 62 IFVGWVILTAVLWITRMTIFHHTGVDLFPFLPK 94 >gi|331699573|ref|YP_004335812.1| hypothetical protein Psed_5835 [Pseudonocardia dioxanivorans CB1190] gi|326954262|gb|AEA27959.1| hypothetical protein Psed_5835 [Pseudonocardia dioxanivorans CB1190] Length=80 Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust. Identities = 29/77 (38%), Positives = 40/77 (52%), Gaps = 4/77 (5%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVRLQAAG--DGADATAR--RRPLLVAVSW 56 ++ W N A IL+ L+ GA LP L AVGV + G G D TAR P V++ Sbjct 1 MTQWINLPAIGNILLLGLVFGAGLPALVAVGVTMLDTGRTSGTDGTARVAASPARQTVAY 60 Query 57 AIFALVLAVVIIGVLYI 73 FA+VLA + G+ + Sbjct 61 LCFAVVLAAIAFGIYEV 77 >gi|111019001|ref|YP_701973.1| hypothetical protein RHA1_ro02008 [Rhodococcus jostii RHA1] gi|110818531|gb|ABG93815.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=88 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/72 (32%), Positives = 40/72 (56%), Gaps = 0/72 (0%) Query 12 KILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFALVLAVVIIGVL 71 ++++ LL GA LP +FA+G+R D + ++ +WA FA+VL +I G+L Sbjct 13 QVILVGLLFGAGLPAIFALGLRSLGGTDTGEGVSQPTAAGRIGAWACFAVVLIAIITGIL 72 Query 72 YIARDFIAHHTG 83 + + F+A G Sbjct 73 LLMQGFLASSFG 84 >gi|84498496|ref|ZP_00997266.1| hypothetical protein JNB_16599 [Janibacter sp. HTCC2649] gi|84381239|gb|EAP97123.1| hypothetical protein JNB_16599 [Janibacter sp. HTCC2649] Length=101 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/63 (43%), Positives = 39/63 (62%), Gaps = 4/63 (6%) Query 12 KILIFSLLAGALLPGLFAVGVRLQAAGDGA----DATARRRPLLVAVSWAIFALVLAVVI 67 K+L+ +L+ GA LP +FAVG+R A G G D AR P AV++A FA+VL + Sbjct 14 KVLVVALVLGAGLPSVFAVGIRSLAWGTGGSAEVDVAARPHPAGRAVAFACFAVVLIGIG 73 Query 68 IGV 70 +G+ Sbjct 74 LGI 76 >gi|334564875|ref|ZP_08517866.1| hypothetical protein CbovD2_09906 [Corynebacterium bovis DSM 20582] Length=89 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/78 (33%), Positives = 42/78 (54%), Gaps = 1/78 (1%) Query 11 LKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFALVLAVVIIGV 70 +++ + ++ GA LP LFA+GV+L +GA AT ++W F +V+ +I G+ Sbjct 8 IQVTVVGIILGAGLPVLFALGVKLGVP-EGASATGSLPGWRRGLAWVFFGVVILAIIAGL 66 Query 71 LYIARDFIAHHTGWAFLG 88 L+I + I GW G Sbjct 67 LWITQGRIYSTFGWDVFG 84 >gi|227503048|ref|ZP_03933097.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|306836719|ref|ZP_07469682.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|227076109|gb|EEI14072.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|304567397|gb|EFM42999.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length=96 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/91 (29%), Positives = 51/91 (57%), Gaps = 12/91 (13%) Query 7 YTATLKILIFSLLAGALLPGLFAVGVRLQAAGDG---------ADATARRRPLLVAVSWA 57 + + L++ +L+ GA +P LFA+G+R GD D A R+ + + W Sbjct 7 FESILRVAGLALVFGAGIPLLFALGMR-SMTGDPIRDDNGVVVGDTPASRQ--MKVLGWT 63 Query 58 IFALVLAVVIIGVLYIARDFIAHHTGWAFLG 88 ++A++ A++++ + +IARD + H+ G+A G Sbjct 64 VYAVLGAIIVVAIAWIARDTLNHYFGFAPFG 94 >gi|256394584|ref|YP_003116148.1| hypothetical protein Caci_5448 [Catenulispora acidiphila DSM 44928] gi|256360810|gb|ACU74307.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length=97 Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 29/42 (70%), Gaps = 1/42 (2%) Query 1 VSAWFNYTATLKILIFSLLAGALLPGLFAVGVR-LQAAGDGA 41 +++W N TA KI++ LLAGA LP LFA+G+R L +GA Sbjct 1 MNSWINLTALWKIVVIGLLAGAGLPALFALGLRALNPRSEGA 42 >gi|317507992|ref|ZP_07965684.1| hypothetical protein HMPREF9336_02056 [Segniliparus rugosus ATCC BAA-974] gi|316253726|gb|EFV13104.1| hypothetical protein HMPREF9336_02056 [Segniliparus rugosus ATCC BAA-974] Length=95 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/56 (42%), Positives = 33/56 (59%), Gaps = 3/56 (5%) Query 21 GALLPGLFAVGVRLQAAGD---GADATARRRPLLVAVSWAIFALVLAVVIIGVLYI 73 GA LP LFA G+ G+ G A + P +A++WA FALV+A++ G+L I Sbjct 27 GAGLPALFAAGLNSLYGGEPEVGGVVAATKNPARIALAWAAFALVIALIAFGILVI 82 >gi|260579536|ref|ZP_05847407.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258602307|gb|EEW15613.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length=100 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 19/84 (23%), Positives = 44/84 (53%), Gaps = 6/84 (7%) Query 7 YTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATA------RRRPLLVAVSWAIFA 60 + A +++ +LL GA +P LF++G+R D + + W ++A Sbjct 7 FEAIIRVAGLALLFGAGIPILFSLGMRCMTGDPIRDDNGVIVGDTEASTQMKVLGWTVYA 66 Query 61 LVLAVVIIGVLYIARDFIAHHTGW 84 ++ V+++ ++++A+D + H+ GW Sbjct 67 VLAFVIVLAIVWVAKDSLNHYFGW 90 >gi|25027029|ref|NP_737083.1| hypothetical protein CE0473 [Corynebacterium efficiens YS-314] gi|23492309|dbj|BAC17283.1| hypothetical protein [Corynebacterium efficiens YS-314] Length=95 Score = 37.4 bits (85), Expect = 0.83, Method: Compositional matrix adjust. Identities = 24/87 (28%), Positives = 43/87 (50%), Gaps = 6/87 (6%) Query 7 YTATLKILIFSLLAGALLPGLFAVGVRLQ-----AAGDGADATARRRPLLVAVSWAIFAL 61 + + + + + +L GA LP LFA+G+RL DGA T PL + F + Sbjct 7 FGSLIDVTLVGILLGAGLPALFALGIRLTHGPSVVTADGA-VTHHASPLGKTAAAICFGI 65 Query 62 VLAVVIIGVLYIARDFIAHHTGWAFLG 88 ++ V++G+L++ + I + W G Sbjct 66 IIFAVVLGILWVTKSTIHQYFAWDIFG 92 >gi|68537175|ref|YP_251880.1| hypothetical protein jk2080 [Corynebacterium jeikeium K411] gi|68264774|emb|CAI38262.1| hypothetical protein jk2080 [Corynebacterium jeikeium K411] Length=100 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/84 (22%), Positives = 44/84 (53%), Gaps = 6/84 (7%) Query 7 YTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATA------RRRPLLVAVSWAIFA 60 + A +++ +LL GA +P LF++G+R D + + W ++A Sbjct 7 FEAIIRVAGLALLFGAGIPILFSLGMRCMTGDPIRDENGVVVGDTEASTQMKVLGWTVYA 66 Query 61 LVLAVVIIGVLYIARDFIAHHTGW 84 ++ ++++ ++++A+D + H+ GW Sbjct 67 VLAFMIVLAIVWVAKDSLNHYFGW 90 >gi|300742648|ref|ZP_07072669.1| hypothetical membrane protein [Rothia dentocariosa M567] gi|311112563|ref|YP_003983785.1| hypothetical protein HMPREF0733_10894 [Rothia dentocariosa ATCC 17931] gi|300381833|gb|EFJ78395.1| hypothetical membrane protein [Rothia dentocariosa M567] gi|310944057|gb|ADP40351.1| hypothetical protein HMPREF0733_10894 [Rothia dentocariosa ATCC 17931] Length=100 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 8/91 (8%) Query 7 YTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATAR-------RRPLLVAVSWAIF 59 + + +++ L GA LP L+A G+RL A A + R +A S +F Sbjct 7 FEKIVPVVLAGLFLGAGLPALYAFGMRLLAGDTEYTADGKLIEIQPPSRGSKIAAS-VVF 65 Query 60 ALVLAVVIIGVLYIARDFIAHHTGWAFLGAT 90 A+++ +V IG+L++A+DFI H GW G T Sbjct 66 AIIIGIVFIGILWVAKDFIFHTFGWNIFGVT 96 >gi|296138440|ref|YP_003645683.1| hypothetical protein Tpau_0707 [Tsukamurella paurometabola DSM 20162] gi|296026574|gb|ADG77344.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=99 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/63 (39%), Positives = 36/63 (58%), Gaps = 4/63 (6%) Query 12 KILIFSLLAGALLPGLFAVGVRLQAAGDG---ADATARR-RPLLVAVSWAIFALVLAVVI 67 K+L+ L+ GA LP LFAVGVR A G+G D T + PL ++ F +V+ ++ Sbjct 13 KVLLVGLILGAGLPALFAVGVRGLAIGNGHEQEDGTVHKPNPLGNVIAAVAFLIVIVAIV 72 Query 68 IGV 70 + V Sbjct 73 LAV 75 >gi|340795661|ref|YP_004761124.1| hypothetical protein CVAR_2712 [Corynebacterium variabile DSM 44702] gi|340535571|gb|AEK38051.1| hypothetical protein CVAR_2712 [Corynebacterium variabile DSM 44702] Length=94 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/80 (29%), Positives = 42/80 (53%), Gaps = 2/80 (2%) Query 11 LKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRR--PLLVAVSWAIFALVLAVVII 68 L+++I ++ GA +P LF +G+RL G + + AV+ IF +++ V+I Sbjct 8 LQVIIAGIILGAGIPVLFGLGIRLSVPAQGVEGHPSQHIPGWQRAVAGLIFLVIIVAVVI 67 Query 69 GVLYIARDFIAHHTGWAFLG 88 G+L+I + + GW G Sbjct 68 GLLWITQGRLYDAFGWDIFG 87 >gi|326383019|ref|ZP_08204708.1| hypothetical protein SCNU_08781 [Gordonia neofelifaecis NRRL B-59395] gi|326198155|gb|EGD55340.1| hypothetical protein SCNU_08781 [Gordonia neofelifaecis NRRL B-59395] Length=90 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/33 (55%), Positives = 23/33 (70%), Gaps = 0/33 (0%) Query 8 TATLKILIFSLLAGALLPGLFAVGVRLQAAGDG 40 +A K+L LL GA LP LFA+G+RL+A G G Sbjct 5 SAITKVLAVGLLFGAGLPALFAIGMRLEATGHG 37 >gi|296393031|ref|YP_003657915.1| hypothetical protein Srot_0602 [Segniliparus rotundus DSM 44985] gi|296180178|gb|ADG97084.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=95 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/68 (37%), Positives = 37/68 (55%), Gaps = 3/68 (4%) Query 9 ATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADA---TARRRPLLVAVSWAIFALVLAV 65 A + +LI ++ GA LP LFA G+ G+ A A + P VA++W FA VLA+ Sbjct 15 AVITVLIVGVIFGAGLPALFAAGLTSLYGGEPETAGTVAATKNPARVALAWLAFAAVLAL 74 Query 66 VIIGVLYI 73 + G+ I Sbjct 75 IAFGIAVI 82 >gi|58257746|dbj|BAA02806.3| KIAA0018 protein [Homo sapiens] Length=553 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 25/72 (35%), Positives = 34/72 (48%), Gaps = 11/72 (15%) Query 24 LPGLFAVGVRLQAAGDG--------ADATARRRPLLVAVSWAIFALVLAVVIIGVLYIAR 75 LPGL+A G G G A TARRR + AVS A+ AL+ ++ V Sbjct 4 LPGLWATGAERARRGAGGSDRRREPAALTARRRTMEPAVSLAVCALLF---LLWVRLKGL 60 Query 76 DFIAHHTGWAFL 87 +F+ H W F+ Sbjct 61 EFVLIHQRWVFV 72 >gi|83594642|ref|YP_428394.1| resolvase-like protein [Rhodospirillum rubrum ATCC 11170] gi|83577556|gb|ABC24107.1| Resolvase-like [Rhodospirillum rubrum ATCC 11170] Length=239 Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust. Identities = 22/64 (35%), Positives = 29/64 (46%), Gaps = 0/64 (0%) Query 26 GLFAVGVRLQAAGDGADATARRRPLLVAVSWAIFALVLAVVIIGVLYIARDFIAHHTGWA 85 GL V AA GADA +R + WA + V +++ ARD I TG+A Sbjct 54 GLEVVKEFYDAAVSGADAIDQREGFTDLLGWAATSEVKTIIVENASRFARDLIVQETGYA 113 Query 86 FLGA 89 L A Sbjct 114 LLTA 117 >gi|283457098|ref|YP_003361661.1| hypothetical protein RMDY18_00090 [Rothia mucilaginosa DY-18] gi|283133076|dbj|BAI63841.1| hypothetical protein RMDY18_00090 [Rothia mucilaginosa DY-18] Length=101 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 29/89 (33%), Positives = 42/89 (48%), Gaps = 6/89 (6%) Query 8 TATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARR---RPLLVAVSWAIFALVLA 64 + +LI L GA LP L+A+G+R+ A A + P A A F + Sbjct 9 NKVIPVLIAGLFFGAGLPALYALGLRMLAGRTEYTADGKLVEIEPPGTAAKIAAFCIFAI 68 Query 65 VVIIGV---LYIARDFIAHHTGWAFLGAT 90 +V I + L++A+DFI H GW G T Sbjct 69 IVAIVIIGILWVAKDFIDHTFGWNIFGVT 97 >gi|255326473|ref|ZP_05367555.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] gi|255296513|gb|EET75848.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296] Length=101 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 29/89 (33%), Positives = 42/89 (48%), Gaps = 6/89 (6%) Query 8 TATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARR---RPLLVAVSWAIFALVLA 64 + +LI L GA LP L+A+G+R+ A A + P A A F + Sbjct 9 NKVIPVLIAGLFFGAGLPALYALGLRMLAGRTEYTADGKLVEIEPPGTAAKIAAFCIFAI 68 Query 65 VVIIGV---LYIARDFIAHHTGWAFLGAT 90 +V I + L++A+DFI H GW G T Sbjct 69 IVAIVIIGILWVAKDFIDHTFGWNIFGVT 97 >gi|255325484|ref|ZP_05366586.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311741276|ref|ZP_07715100.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255297422|gb|EET76737.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311303446|gb|EFQ79525.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length=96 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/83 (26%), Positives = 43/83 (52%), Gaps = 16/83 (19%) Query 17 SLLAGALLPGLFAVGVRLQAA-----------GDGADATARRRPLLVAVSWAIFALVLAV 65 +L+ GA +P LF++G+R GD +T + + W ++A++ V Sbjct 17 ALVFGAGIPLLFSLGMRCMTGDPIRDDNGVVVGDTPASTQMK-----VLGWTVYAVLAVV 71 Query 66 VIIGVLYIARDFIAHHTGWAFLG 88 +++ +++IARD + H+ G+ G Sbjct 72 ILVAIMWIARDTLDHYFGFTPFG 94 >gi|344171529|emb|CCA84144.1| NAD(P)H-dependent FMN reductase, sulfate starvation-induced protein [Ralstonia syzygii R24] Length=216 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 24/30 (80%), Gaps = 0/30 (0%) Query 11 LKILIFSLLAGALLPGLFAVGVRLQAAGDG 40 L+ ++ SL A A+LPG+FAV +++A+GDG Sbjct 121 LRPVLSSLAARAILPGIFAVDAQIEASGDG 150 >gi|309811072|ref|ZP_07704870.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308435036|gb|EFP58870.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length=97 Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust. Identities = 29/78 (38%), Positives = 41/78 (53%), Gaps = 12/78 (15%) Query 7 YTATLKILIFSLLAGALLPGLFAVGVRLQAAGDGADATARRRPLLVAVSWA------IFA 60 + + K+L+ +++ GA +P LFA GVR AAG+GA T A SW FA Sbjct 8 FESAWKVLLVAIVLGAGVPALFAFGVRGFAAGEGALTTGES-----AKSWGKPVGLLCFA 62 Query 61 LVLAVVIIGV-LYIARDF 77 LV V +G+ + IA F Sbjct 63 LVAVAVALGLAIIIASGF 80 Lambda K H 0.331 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128268350160 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40