BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0549c
Length=137
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycob... 264 4e-69
gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_1022... 241 2e-62
gi|31791731|ref|NP_854224.1| hypothetical protein Mb0564c [Mycob... 177 4e-43
gi|256371478|ref|YP_003109302.1| PilT protein domain-containing ... 114 4e-24
gi|297625029|ref|YP_003706463.1| PilT domain-containing protein ... 65.5 2e-09
gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_179... 63.9 7e-09
gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia ... 60.5 9e-08
gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [J... 60.1 1e-07
gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 ... 59.7 1e-07
gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Fra... 58.9 2e-07
gi|284992100|ref|YP_003410654.1| PilT protein domain-containing ... 57.8 5e-07
gi|217979588|ref|YP_002363735.1| PilT protein domain-containing ... 57.0 9e-07
gi|336179019|ref|YP_004584394.1| PilT protein domain-containing ... 56.6 1e-06
gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycob... 56.6 1e-06
gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161... 56.6 1e-06
gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311... 55.8 2e-06
gi|227832924|ref|YP_002834631.1| hypothetical protein cauri_1100... 55.8 2e-06
gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355... 55.5 3e-06
gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [The... 54.7 5e-06
gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Fr... 53.1 1e-05
gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-... 52.8 2e-05
gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [... 52.8 2e-05
gi|336178825|ref|YP_004584200.1| PilT protein domain-containing ... 52.4 2e-05
gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_1670... 52.0 3e-05
gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus ... 51.6 4e-05
gi|145225776|ref|YP_001136454.1| PilT domain-containing protein ... 51.2 5e-05
gi|336177502|ref|YP_004582877.1| PilT protein domain-containing ... 50.4 8e-05
gi|333025632|ref|ZP_08453696.1| putative PilT protein-like prote... 50.4 9e-05
gi|271964589|ref|YP_003338785.1| PilT protein domain-containing ... 50.1 1e-04
gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin compon... 48.9 3e-04
gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 ... 47.8 5e-04
gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Stre... 47.4 6e-04
gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [... 47.0 0.001
gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Fr... 47.0 0.001
gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycoba... 47.0 0.001
gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propi... 46.2 0.001
gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin compon... 46.2 0.002
gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin compon... 45.4 0.002
gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin co... 45.4 0.003
gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641... 45.4 0.003
gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin co... 45.1 0.003
gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, c... 44.3 0.006
gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin compon... 43.9 0.008
gi|268318400|ref|YP_003292118.1| PilT domain-containing protein ... 43.9 0.009
gi|154246134|ref|YP_001417092.1| PilT domain-containing protein ... 43.5 0.011
gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kit... 42.7 0.019
gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycoba... 40.8 0.075
gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651... 40.4 0.078
gi|153877936|ref|ZP_02004421.1| nucleic acid-binding protein,con... 40.4 0.096
gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-... 40.0 0.12
>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
61 more sequence titles
Length=137
Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ 60
+RASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ
Sbjct 1 MRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ 60
Query 61 RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL 120
RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL
Sbjct 61 RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL 120
Query 121 TTDERLARAWPSAHAIG 137
TTDERLARAWPSAHAIG
Sbjct 121 TTDERLARAWPSAHAIG 137
>gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_10224 [Mycobacterium tuberculosis
H37Ra]
gi|289744262|ref|ZP_06503640.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308231586|ref|ZP_07412990.2| toxin [Mycobacterium tuberculosis SUMu001]
gi|308395796|ref|ZP_07669348.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|289684790|gb|EFD52278.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308216759|gb|EFO76158.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308367245|gb|EFP56096.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=126
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/126 (99%), Positives = 126/126 (100%), Gaps = 0/126 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD
Sbjct 1 MVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 60
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP 131
AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP
Sbjct 61 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP 120
Query 132 SAHAIG 137
SAHAIG
Sbjct 121 SAHAIG 126
>gi|31791731|ref|NP_854224.1| hypothetical protein Mb0564c [Mycobacterium bovis AF2122/97]
gi|121636467|ref|YP_976690.1| hypothetical protein BCG_0594c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224988939|ref|YP_002643626.1| hypothetical protein JTY_0564 [Mycobacterium bovis BCG str. Tokyo
172]
6 more sequence titles
Length=102
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 92/92 (100%), Gaps = 0/92 (0%)
Query 1 VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ 60
+RASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ
Sbjct 1 MRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ 60
Query 61 RAGALTVAYVDAALEELRQVPVTRHGLSSLLA 92
RAGALTVAYVDAALEELRQVPVTRHGLSSLLA
Sbjct 61 RAGALTVAYVDAALEELRQVPVTRHGLSSLLA 92
>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length=146
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/126 (53%), Positives = 84/126 (67%), Gaps = 2/126 (1%)
Query 11 QVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV 70
+ VVDASA+VDLL ++ AVR R+A A+HAPAH DAEVLSALGR+ RA +L V
Sbjct 21 EAVVDASALVDLLL-DNELGRAVRRRIAGHALHAPAHVDAEVLSALGRLHRADSLDAGTV 79
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAW 130
+ L EL P+ RH + LL G W+RR LRL DA+Y+ELA + G+ L+TTD RL R
Sbjct 80 EVKLRELAAAPIERHPVHDLLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRL-RGA 138
Query 131 PSAHAI 136
PS +
Sbjct 139 PSVEVV 144
>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/119 (39%), Positives = 59/119 (50%), Gaps = 1/119 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTA-MHAPAHFDAEVLSALGRMQRAGALTVAYV 70
+V+DASA V L R + +R R+ R +H P FD EVL AL R +R ++ A
Sbjct 2 IVLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPARA 61
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
+ A LR++ RH L W R L DA YV LAE L+T D RL RA
Sbjct 62 ERAFARLRELRCERHPHVPLAERVWELRANLSAYDATYVALAEILEAPLITLDARLGRA 120
>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/119 (42%), Positives = 66/119 (56%), Gaps = 2/119 (1%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDA+A+VD L D +R+ LA +HAPA D EV+SAL + R G L+ A
Sbjct 2 IVVDAAALVDALTGV-DGTDELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAH 60
Query 72 AALEELRQVPVTRH-GLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
AL + + + R G + L A++ RD L DA YV LAE +LT D RLAR+
Sbjct 61 DALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARS 119
>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/117 (36%), Positives = 58/117 (50%), Gaps = 0/117 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+V+D SA+V+ L T D VRA R + AP D E S L + R G L
Sbjct 2 IVLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEAS 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLAR 128
ALE L ++ + R+G + LL W R + DA Y+ LAET L+T + +L R
Sbjct 62 RALELLGRMNLRRYGHAPLLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDR 118
>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/119 (37%), Positives = 65/119 (55%), Gaps = 2/119 (1%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLA-RTAMHAPAHFDAEVLSALGRMQRAGALTVAYV 70
+V+DASA+VD L S +R +A + AP EV S L R++ AG +T
Sbjct 2 IVLDASALVDFLL-LSPGWEQIRGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES 60
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
+ L + ++ + R + L A AW+ R +LR++DA YV LA LLTTD++LAR
Sbjct 61 ASCLTQAGRLAIERVPMLDLTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLARG 119
>gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL
2338]
gi|291003763|ref|ZP_06561736.1| hypothetical protein SeryN2_04507 [Saccharopolyspora erythraea
NRRL 2338]
gi|133914897|emb|CAM05010.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL
2338]
Length=129
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/120 (35%), Positives = 62/120 (52%), Gaps = 5/120 (4%)
Query 13 VVDASAMVDLLA--RTSDRCSA-VRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAY 69
+VDASA++DLL R + R + + A++ H P D EV++ L + +R+G+LT A
Sbjct 1 MVDASAVLDLLLQLRRAHRIGELISSPFAQS--HVPDTIDREVINVLRKRERSGSLTSAE 58
Query 70 VDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
+ E +P H W R + DA YV LAE+ L+T+DE+LAR
Sbjct 59 AETVFGEFLLLPFEVHDARPFAPRVWGLRSVCSVGDAYYVSLAESLDATLITSDEKLARG 118
>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/119 (40%), Positives = 62/119 (53%), Gaps = 3/119 (2%)
Query 12 VVVDASAMVDLLA-RTSDRCSAVRARL-ARTAMHAPAHFDAEVLSALGRMQRAGALTVAY 69
+VVDAS +VDLLA S R A R RL +APAH D EV+SAL + R + +
Sbjct 4 IVVDASVIVDLLAGDDSPRRKAARDRLTGGDVFYAPAHLDVEVISALRGLARRTSRLAEH 63
Query 70 VDAALEELRQVPVTRHGLSSLLAG-AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA 127
+ + L ++P+ R L+ A W R T+ DA YV LAE LLT D + A
Sbjct 64 TPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKYA 122
>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/119 (37%), Positives = 57/119 (48%), Gaps = 0/119 (0%)
Query 11 QVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV 70
+VVDAS +V L R + HAP D EVLSA+ R + L
Sbjct 1 MIVVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAA 60
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
A+ +R +PV RHG LL A RD++ D +YV LAE G L+T D RL+ A
Sbjct 61 RDAVTAMRDLPVIRHGHDLLLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHA 119
>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris
BL2]
gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/120 (40%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARL--ARTAMHAPAHFDAEVLSALGRMQRAGALTVAY 69
+VVDASA+++ L RT V RL A +HAP D EV + R +G + A
Sbjct 2 IVVDASALLEALLRTPS-AKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRAR 60
Query 70 VDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
AL +L +P+ R+ LL W R+ L DA YV LAE LLT D RLA A
Sbjct 61 GGLALADLADLPLRRYPHDFLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA 120
>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 63/125 (51%), Gaps = 1/125 (0%)
Query 13 VVDASAMVDLLARTSDRCSAVRARLAR-TAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
V+D SA+V L AVR RLA ++ AP D E++SAL M R +T
Sbjct 7 VIDCSALVRTLTDQGAGGVAVRRRLAGLESLAAPGLLDYEIVSALFGMLRGNKITKRETT 66
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP 131
A+ + + +P+ RH L L DA YV LAE GL L+T+D R+AR+
Sbjct 67 KAVADYQILPLVRHETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARSGT 126
Query 132 SAHAI 136
+A A+
Sbjct 127 AACAV 131
>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=129
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/118 (36%), Positives = 62/118 (53%), Gaps = 1/118 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+V+DASA V+L+ T+ +AV RL +HAPAHFD EV+ A+ + ++
Sbjct 2 IVLDASAAVELML-TTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
+ +PV R L A+ R T + D YV LAE G+ L+T D RLA++
Sbjct 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/118 (44%), Positives = 61/118 (52%), Gaps = 4/118 (3%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
VVVDAS +VD L A RARLA + AP DAE+LS L R+ A L +
Sbjct 2 VVVDASVLVDALLLDG----AARARLAEANLQAPELIDAELLSVLRRLVLAERLGEQHAL 57
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
AL +++ + RH L AW R L DA+YV LAE G LLT D R ARA
Sbjct 58 QALATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARA 115
>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT
140010059]
gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/118 (35%), Positives = 60/118 (51%), Gaps = 1/118 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+V+DASA V+L+ T + R RL +HAPAHFD EV+ A+ + ++
Sbjct 2 IVLDASAAVELMLATPAGAAVAR-RLRGETVHAPAHFDVEVIGAIHQAVVRQLISDHEGL 60
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
+ +PV R L A+ R T + D YV LAE G+ L+T D RLA++
Sbjct 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
>gi|227832924|ref|YP_002834631.1| hypothetical protein cauri_1100 [Corynebacterium aurimucosum
ATCC 700975]
gi|262182587|ref|ZP_06042008.1| hypothetical protein CaurA7_01220 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453940|gb|ACP32693.1| hypothetical protein cauri_1100 [Corynebacterium aurimucosum
ATCC 700975]
Length=131
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 1/122 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+V+DASA ++ L + D AP+H E L+ L R++RAGA+ A
Sbjct 4 LVIDASAAIEFLLK-RDALQRHSTAYPEADFIAPSHMPLECLNVLKRLERAGAIDSATAS 62
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP 131
++ + + + + WSRR T + D+ YV ++ LL+ D RL AWP
Sbjct 63 FLANDVMEFNIELISVGDIANHVWSRRHTFSIYDSAYVAVSNIFEAPLLSRDTRLMAAWP 122
Query 132 SA 133
++
Sbjct 123 NS 124
>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/118 (44%), Positives = 60/118 (51%), Gaps = 4/118 (3%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
VVVDAS +VD L A R RLA + AP DAE+LS L R+ A L +
Sbjct 2 VVVDASVLVDALLIQG----AARDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHAL 57
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
AL +++ + RH L AW R L DALYV LAE G LLT D R ARA
Sbjct 58 QALATAQRLGLRRHVSRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARA 115
>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/118 (39%), Positives = 62/118 (53%), Gaps = 1/118 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+V+DASA + L RT V A + + APA DAEVL+ + + +G L+
Sbjct 4 LVLDASAAAEYLLRTP-LGRQVAALVEGKRLFAPALLDAEVLAVVRKATLSGRLSPTRAQ 62
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
ALE+L P+ R LL A++ RD L DALYV LA+ +LT D LARA
Sbjct 63 EALEDLFSWPLFRVDHGPLLLPAFALRDRLTAYDALYVALAQRLSAPILTADGPLARA 120
>gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Frankia alni ACN14a]
gi|111151738|emb|CAJ63458.1| hypothetical protein; putative PIN domain [Frankia alni ACN14a]
Length=109
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/86 (41%), Positives = 47/86 (55%), Gaps = 0/86 (0%)
Query 44 APAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRL 103
AP D E++SAL M+R G LT + A+ + + +P+ RH L TL
Sbjct 13 APGLLDYEMISALFGMRRGGKLTEREMGKAVADYQLLPLVRHETLVLWRRVRELHHTLSA 72
Query 104 TDALYVELAETAGLVLLTTDERLARA 129
DA YV LAET GL L+T+D R+AR
Sbjct 73 YDAQYVALAETLGLPLITSDARIARG 98
>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/118 (35%), Positives = 61/118 (52%), Gaps = 1/118 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+V+DASA V+L+ T+ +AV RL + APAHFD EV+ A+ + ++
Sbjct 2 IVLDASAAVELML-TTPAGAAVARRLRGETVRAPAHFDVEVIGAIRQAVVRQLISDHEGL 60
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
+ +PV R L A+ R T + D YV LAE G+ L+T D RLA++
Sbjct 61 VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS 118
>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/126 (35%), Positives = 59/126 (47%), Gaps = 0/126 (0%)
Query 4 SPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAG 63
S TS +VVDAS + L + R RLA + AP D EV+S R A
Sbjct 21 SATSGRIVIVVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAK 80
Query 64 ALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTD 123
+ +A+ +L +P+ R LL W + L DA YV LAE +VL+T D
Sbjct 81 RMPARRAASAVADLTNLPLRRSSHQPLLHRVWELQHVLTAYDAAYVALAEALDIVLVTAD 140
Query 124 ERLARA 129
RL+RA
Sbjct 141 ARLSRA 146
>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (34%), Positives = 56/118 (48%), Gaps = 2/118 (1%)
Query 13 VVDASAMVDLLA-RTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
VVD S ++D+L+ R D R RT +HAP H D EV S + + +T +
Sbjct 6 VVDCSLVIDVLSVRNGDEVLRQRLSAPRT-LHAPHHLDVEVASTVRGLAAGKKITDHRGE 64
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
L + ++ +TRH + W R L DA Y+ LAE G LLT D ++ A
Sbjct 65 QMLADYARLRITRHPVWPYHPRLWELRHNLGAYDAAYIALAEALGCELLTGDTKIKNA 122
>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC
12478]
Length=129
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/118 (34%), Positives = 62/118 (53%), Gaps = 1/118 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+V+DASA V+L+ T + R RL +HAPAH D EV+ A+ R ++
Sbjct 2 IVLDASAAVELVLATPPGAAVAR-RLRDETVHAPAHIDVEVIGAIRRAVVRRLISDHEGV 60
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
A+ + + + R + A+ R T + DA+YV LAE G+ L+T D RLA++
Sbjct 61 VAVADFLSLQIRRWPIKPFAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQS 118
>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/88 (41%), Positives = 45/88 (52%), Gaps = 0/88 (0%)
Query 42 MHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTL 101
+ AP D EV S L R +G L D A +L +P+ R G LL W R T+
Sbjct 2 LTAPEVIDLEVASVLRRAAASGRLPDRRADLAWNDLIDLPLRRAGHRPLLRRCWELRHTV 61
Query 102 RLTDALYVELAETAGLVLLTTDERLARA 129
DA YV LAE +VL+T D RL+RA
Sbjct 62 TSYDAAYVALAEALDIVLVTADARLSRA 89
>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/129 (38%), Positives = 61/129 (48%), Gaps = 0/129 (0%)
Query 1 VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ 60
VR TS P +VVDAS + L R RL A+ AP D EV S R
Sbjct 13 VRRWMTSGPNVIVVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHV 72
Query 61 RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL 120
A +T DA + +L +P+ R LL W+ R T+ DA Y LAE +VL+
Sbjct 73 AAKLMTARRADAGVSDLEDLPLRRCSHRPLLERIWALRRTVTPYDAAYAALAEALEVVLV 132
Query 121 TTDERLARA 129
T D RLARA
Sbjct 133 TADARLARA 141
>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/119 (33%), Positives = 56/119 (48%), Gaps = 1/119 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLAR-TAMHAPAHFDAEVLSALGRMQRAGALTVAYV 70
+VVDAS + + L +R R L T AP H+ EV S + + ++
Sbjct 2 IVVDASVLANALVYADERGQRARVALGHDTEWAAPEHWMVEVFSVMHGLTLGKKISEERA 61
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
+A+ L + V + +LL W R + DA YV LAE L L+T+D RLARA
Sbjct 62 RSAIARLPHLGVDHVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLARA 120
>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/90 (38%), Positives = 42/90 (47%), Gaps = 0/90 (0%)
Query 40 TAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRD 99
T ++APA D E + + RAG +T D A+ +L P+ R LL W R
Sbjct 2 TEVYAPALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFRVWELRH 61
Query 100 TLRLTDALYVELAETAGLVLLTTDERLARA 129
DA YV LAE G LLT D RL R
Sbjct 62 NYSPYDASYVALAEQLGATLLTGDARLQRG 91
>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum
DSM 43021]
gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 57/120 (48%), Gaps = 6/120 (5%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDAS + LLA +R RLAR +HAPA D E+ S + G V +
Sbjct 3 LVVDASIVFRLLANVKGD-DLLRQRLARK-VHAPALIDVEIASVVRGHVVTGKPEVRISE 60
Query 72 A----ALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLA 127
A LE Q+ + RH + L R+ L D +YV LAE G+ +LT D + A
Sbjct 61 ARAQIMLERYAQLKIVRHPMLPLQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAKFA 120
>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA2]
gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL044PA1]
gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA3]
gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
humerusii P08]
Length=197
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (30%), Positives = 53/115 (47%), Gaps = 1/115 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VV+ S + ++L ++ C+A + + AP H AE+ + + +T A
Sbjct 3 LVVEVSVLAEMLVGSTVGCAAWQ-QWGGEEFIAPQHLSAEIAHVVRNLSLGQLITDAEAM 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL 126
L + R V + + L+ AW R + DALYV LA G LLT D RL
Sbjct 62 QILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTRDHRL 116
>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/79 (42%), Positives = 44/79 (56%), Gaps = 0/79 (0%)
Query 51 EVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVE 110
EV SA+ R+++ G LT AA+E+L +P+ L +LL W R L DA YV
Sbjct 36 EVASAVRRLEQRGELTARRAAAAMEDLMALPLQVARLRTLLPRCWELRHNLTPYDAAYVT 95
Query 111 LAETAGLVLLTTDERLARA 129
LAE + L+T D RLA A
Sbjct 96 LAEFSESPLVTADRRLAAA 114
>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis
BCW-1]
Length=139
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/124 (34%), Positives = 61/124 (50%), Gaps = 6/124 (4%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTA-MHAPAHFDAEVLSAL---GRMQRAG--AL 65
+VVD SA++ L+ VR R+A+ + AP D E++SAL R +R G L
Sbjct 2 IVVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPKL 61
Query 66 TVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDER 125
+ + A+ R + + RH L L + DA YV LAE GL L+T+D R
Sbjct 62 SEKQLRKAVATYRDLAIDRHETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSDAR 121
Query 126 LARA 129
+ R+
Sbjct 122 IDRS 125
>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (36%), Positives = 46/94 (49%), Gaps = 0/94 (0%)
Query 34 RARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAG 93
R +A +H P D+E+ S L R+ + L A AL+ R++ VTR+ + L
Sbjct 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWALQTWRRLAVTRYPVVGLFER 79
Query 94 AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA 127
W R L DA YV LAE L+T D RL+
Sbjct 80 IWEIRANLSAYDASYVALAEALNCALVTADLRLS 113
>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/118 (38%), Positives = 54/118 (46%), Gaps = 0/118 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
VV+DASA V LL + V + A+ AP E + L R AG L +
Sbjct 9 VVLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEAT 68
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
A +L +PV R +SL AW R L DA YV LAE L+T D RL RA
Sbjct 69 LAHADLLAMPVRRLAYASLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRA 126
>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=127
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (36%), Positives = 46/94 (49%), Gaps = 0/94 (0%)
Query 34 RARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAG 93
R +A +H P D+E+ S L R+ + L A AL+ R++ VTR+ + L
Sbjct 20 RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFER 79
Query 94 AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA 127
W R L DA YV LAE L+T D RL+
Sbjct 80 IWEIRANLSAYDASYVALAEALNCALVTADLRLS 113
>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA1]
gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes
6609]
Length=129
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/115 (32%), Positives = 51/115 (45%), Gaps = 1/115 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDAS + ++L S A + AP H AE+ + + +T A
Sbjct 3 LVVDASVLAEMLV-GSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL 126
L + R V + + L+ AW R + DALYV LA G+ LLT D RL
Sbjct 62 RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL 116
>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA1]
Length=129
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (31%), Positives = 53/115 (47%), Gaps = 1/115 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDAS + ++L ++ +A + + AP H AE+ + + +T A
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQ-QWGGEEFIAPQHLPAEIAHVVRNLSSGHLITDAEAM 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL 126
L + R V + + L+ AW R + DALYV LA G LLT D RL
Sbjct 62 RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL056PA1]
Length=129
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (31%), Positives = 54/115 (47%), Gaps = 1/115 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDAS + ++L ++ +A + + AP H AE+ + + +T A
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQ-QWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL 126
L + R + V + + L+ AW R + DALYV LA G LLT D RL
Sbjct 62 RILSDFRALKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
55 more sequence titles
gi|289153552|gb|EFD02266.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes SK187]
gi|289158831|gb|EFD07031.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J165]
gi|291376345|gb|ADE00200.1| PIN domain protein [Propionibacterium acnes SK137]
gi|313763711|gb|EFS35075.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA1]
gi|313771728|gb|EFS37694.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL074PA1]
gi|313793743|gb|EFS41774.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA1]
gi|313803055|gb|EFS44263.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA2]
gi|313808461|gb|EFS46928.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA2]
gi|313810550|gb|EFS48264.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA1]
gi|313816972|gb|EFS54686.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA1]
gi|313818114|gb|EFS55828.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA2]
gi|313820974|gb|EFS58688.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA1]
gi|313823954|gb|EFS61668.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA2]
gi|313829774|gb|EFS67488.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL063PA2]
gi|313831592|gb|EFS69306.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL007PA1]
gi|313839318|gb|EFS77032.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL086PA1]
gi|314916534|gb|EFS80365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA4]
gi|314918808|gb|EFS82639.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA1]
gi|314921013|gb|EFS84844.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA3]
gi|314926999|gb|EFS90830.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL036PA3]
gi|314932415|gb|EFS96246.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL067PA1]
gi|314956724|gb|EFT00976.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA1]
gi|314959635|gb|EFT03737.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA1]
gi|314961820|gb|EFT05921.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA2]
gi|314964805|gb|EFT08905.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA1]
gi|314968688|gb|EFT12786.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL037PA1]
gi|314974943|gb|EFT19038.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA1]
gi|314977963|gb|EFT22057.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL045PA1]
gi|314979647|gb|EFT23741.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA2]
gi|314984627|gb|EFT28719.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA1]
gi|314988284|gb|EFT32375.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA2]
gi|314990373|gb|EFT34464.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL005PA3]
gi|315079229|gb|EFT51232.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL053PA2]
gi|315082308|gb|EFT54284.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL078PA1]
gi|315083723|gb|EFT55699.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL027PA2]
gi|315087362|gb|EFT59338.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL002PA3]
gi|315089779|gb|EFT61755.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL072PA1]
gi|315095553|gb|EFT67529.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL038PA1]
gi|315100186|gb|EFT72162.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL059PA2]
gi|315102508|gb|EFT74484.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL046PA1]
gi|315109573|gb|EFT81549.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL030PA2]
gi|327326558|gb|EGE68346.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA3]
gi|327332823|gb|EGE74555.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL096PA2]
gi|327447647|gb|EGE94301.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA2]
gi|327448521|gb|EGE95175.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL043PA1]
gi|327449624|gb|EGE96278.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL013PA2]
gi|327455832|gb|EGF02487.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA3]
gi|327456075|gb|EGF02730.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL092PA1]
gi|327457983|gb|EGF04638.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL083PA2]
gi|328757147|gb|EGF70763.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL087PA1]
gi|328757341|gb|EGF70957.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL020PA1]
gi|328757527|gb|EGF71143.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA2]
gi|328762101|gb|EGF75606.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL099PA1]
gi|332676453|gb|AEE73269.1| hypothetical protein PAZ_c21460 [Propionibacterium acnes 266]
gi|340774022|gb|EGR96512.1| PIN domain protein [Propionibacterium acnes SK182]
Length=129
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/115 (31%), Positives = 53/115 (47%), Gaps = 1/115 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDAS + ++L ++ +A + + AP H AE+ + + +T A
Sbjct 3 LVVDASVLAEMLVGSTVGHAAWQ-QWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL 126
L + R V + + L+ AW R + DALYV LA G LLT D RL
Sbjct 62 RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT
140010059]
gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/94 (36%), Positives = 46/94 (49%), Gaps = 0/94 (0%)
Query 34 RARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAG 93
R +A +H P D+E+ S L R+ + L A AL+ R++ VTR+ + L
Sbjct 20 RQLIAAERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRALQTWRRLAVTRYPVVGLFER 79
Query 94 AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA 127
W R L DA YV LAE L+T D RL+
Sbjct 80 IWEIRANLSAYDASYVALAEALNCELVTADLRLS 113
>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
7 more sequence titles
gi|282581983|gb|EFB87366.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes J139]
gi|313813817|gb|EFS51531.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL025PA1]
gi|314924524|gb|EFS88355.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL001PA1]
gi|315102935|gb|EFT74911.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL050PA2]
gi|327335217|gb|EGE76927.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL097PA1]
gi|333766217|gb|EGL43529.1| PIN domain protein [Propionibacterium sp. 409-HC1]
gi|340768857|gb|EGR91382.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
Length=129
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/115 (32%), Positives = 50/115 (44%), Gaps = 1/115 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDAS + ++L S A + AP H AE+ + + +T A
Sbjct 3 LVVDASVLAEMLV-GSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL 126
L + R V + + L+ AW R + DALYV LA G LLT D RL
Sbjct 62 RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium
sp. Spyr1]
Length=133
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/119 (38%), Positives = 56/119 (48%), Gaps = 0/119 (0%)
Query 11 QVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV 70
+VVDAS + L R RL A+ AP D EV S R A +T
Sbjct 1 MIVVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA 60
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
DAA+ +L +P+ R LL W R T+ DA Y LAE +VL+T D RLARA
Sbjct 61 DAAVSDLADLPLRRCSHRPLLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARA 119
>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL082PA2]
gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA3]
gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL110PA4]
gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL060PA1]
gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL103PA1]
Length=129
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/115 (32%), Positives = 50/115 (44%), Gaps = 1/115 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD 71
+VVDAS + ++L S A + AP H AE+ + + +T A
Sbjct 3 LVVDASVLAEMLV-GSTVGRAAWQQWGGEEFIAPQHLLAEIAHVVRNLSLGHLITDAEAM 61
Query 72 AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL 126
L + R V + + L+ AW R + DALYV LA G LLT D RL
Sbjct 62 RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL 116
>gi|268318400|ref|YP_003292118.1| PilT domain-containing protein [Rhodothermus marinus DSM 4252]
gi|345301879|ref|YP_004831073.1| PilT domain-containing protein [Rhodothermus marinus SG0.5JP17-172]
gi|262335934|gb|ACY49730.1| PilT domain-containing protein [Rhodothermus marinus DSM 4252]
gi|345113953|gb|AEN74784.1| PilT domain-containing protein [Rhodothermus marinus SG0.5JP17-172]
Length=142
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/130 (37%), Positives = 58/130 (45%), Gaps = 10/130 (7%)
Query 8 PPEQVVVDASAMVDLLARTSD-----RCSAVRARLARTAMHAPAHFDAEVLSALGRMQRA 62
P + +DAS +V L+AR D R A A R A AP EV +AL R R
Sbjct 2 PGSWICIDASIVVRLVARPDDHVVLERWDAWLAEGRRLA--APTLLFYEVTNALHRYHRH 59
Query 63 GALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRL---TDALYVELAETAGLVL 119
G + V +ALE +PV HG +SL A L L DA Y+ LAE
Sbjct 60 GWMKEGTVRSALEAALALPVELHGDASLHERALEMATELGLAAAYDAHYLALAERLRAEF 119
Query 120 LTTDERLARA 129
T D +L RA
Sbjct 120 WTADGKLVRA 129
>gi|154246134|ref|YP_001417092.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
gi|154160219|gb|ABS67435.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=141
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/124 (36%), Positives = 60/124 (49%), Gaps = 10/124 (8%)
Query 11 QVVVDASAMVDLLARTSDRCSAVRARLARTA-MHAPAHFDAEVLSALGRMQRAGALTVAY 69
+ VVDAS ++ DR A RA LA A + AP AEV +AL + +RAGA+T
Sbjct 3 RFVVDASIVLKWFFDEGDRAEA-RALLASGASLLAPTLVQAEVANALWKKKRAGAMT--- 58
Query 70 VDAALEELRQVPVTRHGLSSL-----LAGAWSRRDTLRLTDALYVELAETAGLVLLTTDE 124
V+ A+ Q+P L + +A S R + D +Y+ LA LT D
Sbjct 59 VEDAIHICAQLPPFFQRLFPVEPLLPVAIELSFRLDHAIYDCIYLSLARETDCPFLTADR 118
Query 125 RLAR 128
RLAR
Sbjct 119 RLAR 122
>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/119 (37%), Positives = 58/119 (49%), Gaps = 1/119 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARLARTAMH-APAHFDAEVLSALGRMQRAGALTVAYV 70
+VVDASA+V L+ R A RA LA AP H EV+ +L + A LT V
Sbjct 2 IVVDASAVVLSLSDRGPRGDAARALLAADPEWVAPEHVVIEVMQSLRGLYLAKQLTAEEV 61
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
L + + + ++ LL W +D L DA YV +AE G L+T D RL RA
Sbjct 62 AELTRRLPGLAIRKVEVAPLLGRIWELKDNLTPDDAAYVAVAELHGAPLVTADLRLMRA 120
>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=133
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/98 (36%), Positives = 47/98 (48%), Gaps = 1/98 (1%)
Query 33 VRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSS-LL 91
+R L + +AP DAEV AL R + ++ AAL+ L + R+ S L+
Sbjct 25 LRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLI 84
Query 92 AGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
W R + DALYV LA + LLT D RLA A
Sbjct 85 EYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA 122
>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT
140010059]
gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/98 (36%), Positives = 47/98 (48%), Gaps = 1/98 (1%)
Query 33 VRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSS-LL 91
+R L + +AP DAEV AL R + ++ AAL+ L + R+ S L+
Sbjct 25 LRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLI 84
Query 92 AGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
W R + DALYV LA + LLT D RLA A
Sbjct 85 EYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA 122
>gi|153877936|ref|ZP_02004421.1| nucleic acid-binding protein,contains PIN domain [Beggiatoa sp.
PS]
gi|152065600|gb|EDN65579.1| nucleic acid-binding protein,contains PIN domain [Beggiatoa sp.
PS]
Length=141
Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 2/90 (2%)
Query 42 MHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWS-RRDT 100
+H P F E ++ + + QR G + D + E++QVP+ H +L A+ +T
Sbjct 34 LHVPHLFLLEFINVVCKKQRRGDINAEESDFIINEIQQVPLKWHDDRLVLTKAYEIANET 93
Query 101 LR-LTDALYVELAETAGLVLLTTDERLARA 129
R L D LY+ LA + ++T D + A
Sbjct 94 QRSLYDCLYLSLAISLDSEMVTADLKFYEA 123
>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/119 (33%), Positives = 56/119 (48%), Gaps = 1/119 (0%)
Query 12 VVVDASAMVDLLARTSDRCSAVRARL-ARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV 70
+VVDAS + D L A RA L AP+H EV+S + G L +A
Sbjct 7 IVVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLARA 66
Query 71 DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA 129
A++ L + + G+++LL W R + DA Y+ AE L+T D RLA+A
Sbjct 67 QEAIDTLPSLVIDEVGVATLLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKA 125
Lambda K H
0.320 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128325363320
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40