BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0549c

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607689|ref|NP_215063.1|  hypothetical protein Rv0549c [Mycob...   264    4e-69
gi|167968378|ref|ZP_02550655.1|  hypothetical protein MtubH3_1022...   241    2e-62
gi|31791731|ref|NP_854224.1|  hypothetical protein Mb0564c [Mycob...   177    4e-43
gi|256371478|ref|YP_003109302.1|  PilT protein domain-containing ...   114    4e-24
gi|297625029|ref|YP_003706463.1|  PilT domain-containing protein ...  65.5    2e-09
gi|333990432|ref|YP_004523046.1|  hypothetical protein JDM601_179...  63.9    7e-09
gi|86740207|ref|YP_480607.1|  PilT protein-like protein [Frankia ...  60.5    9e-08
gi|84494959|ref|ZP_00994078.1|  hypothetical protein JNB_09174 [J...  60.1    1e-07
gi|134102274|ref|YP_001107935.1|  hypothetical protein SACE_5826 ...  59.7    1e-07
gi|288917657|ref|ZP_06412020.1|  PilT protein domain protein [Fra...  58.9    2e-07
gi|284992100|ref|YP_003410654.1|  PilT protein domain-containing ...  57.8    5e-07
gi|217979588|ref|YP_002363735.1|  PilT protein domain-containing ...  57.0    9e-07
gi|336179019|ref|YP_004584394.1|  PilT protein domain-containing ...  56.6    1e-06
gi|15608858|ref|NP_216236.1|  hypothetical protein Rv1720c [Mycob...  56.6    1e-06
gi|87124166|ref|ZP_01080016.1|  hypothetical protein RS9917_11161...  56.6    1e-06
gi|340626727|ref|YP_004745179.1|  hypothetical protein MCAN_17311...  55.8    2e-06
gi|227832924|ref|YP_002834631.1|  hypothetical protein cauri_1100...  55.8    2e-06
gi|87300649|ref|ZP_01083491.1|  hypothetical protein WH5701_04355...  55.5    3e-06
gi|218295256|ref|ZP_03496092.1|  PilT protein domain protein [The...  54.7    5e-06
gi|111224206|ref|YP_715000.1|  hypothetical protein FRAAL4817 [Fr...  53.1    1e-05
gi|326903335|gb|EGE50268.1|  toxin [Mycobacterium tuberculosis W-...  52.8    2e-05
gi|240168730|ref|ZP_04747389.1|  PilT domain-containing protein [...  52.8    2e-05
gi|336178825|ref|YP_004584200.1|  PilT protein domain-containing ...  52.4    2e-05
gi|240170953|ref|ZP_04749612.1|  hypothetical protein MkanA1_1670...  52.0    3e-05
gi|152966078|ref|YP_001361862.1|  PilT protein-like [Kineococcus ...  51.6    4e-05
gi|145225776|ref|YP_001136454.1|  PilT domain-containing protein ...  51.2    5e-05
gi|336177502|ref|YP_004582877.1|  PilT protein domain-containing ...  50.4    8e-05
gi|333025632|ref|ZP_08453696.1|  putative PilT protein-like prote...  50.4    9e-05
gi|271964589|ref|YP_003338785.1|  PilT protein domain-containing ...  50.1    1e-04
gi|313836325|gb|EFS74039.1|  toxin-antitoxin system, toxin compon...  48.9    3e-04
gi|336118169|ref|YP_004572938.1|  hypothetical protein MLP_25210 ...  47.8    5e-04
gi|297161843|gb|ADI11555.1|  hypothetical protein SBI_08437 [Stre...  47.4    6e-04
gi|289753016|ref|ZP_06512394.1|  conserved hypothetical protein [...  47.0    0.001
gi|312195768|ref|YP_004015829.1|  PilT protein domain protein [Fr...  47.0    0.001
gi|15608100|ref|NP_215475.1|  hypothetical protein Rv0960 [Mycoba...  47.0    0.001
gi|50843515|ref|YP_056742.1|  hypothetical protein PPA2073 [Propi...  46.2    0.001
gi|313827108|gb|EFS64822.1|  toxin-antitoxin system, toxin compon...  46.2    0.002
gi|313832495|gb|EFS70209.1|  toxin-antitoxin system, toxin compon...  45.4    0.002
gi|289426009|ref|ZP_06427756.1|  toxin-antitoxin system, toxin co...  45.4    0.003
gi|340625973|ref|YP_004744425.1|  hypothetical protein MCAN_09641...  45.4    0.003
gi|282854837|ref|ZP_06264171.1|  toxin-antitoxin system, toxin co...  45.1    0.003
gi|315446137|ref|YP_004079016.1|  nucleic acid-binding protein, c...  44.3    0.006
gi|314967266|gb|EFT11365.1|  toxin-antitoxin system, toxin compon...  43.9    0.008
gi|268318400|ref|YP_003292118.1|  PilT domain-containing protein ...  43.9    0.009
gi|154246134|ref|YP_001417092.1|  PilT domain-containing protein ...  43.5    0.011
gi|311896050|dbj|BAJ28458.1|  hypothetical protein KSE_26460 [Kit...  42.7    0.019
gi|15607207|ref|NP_214579.1|  hypothetical protein Rv0065 [Mycoba...  40.8    0.075
gi|340625099|ref|YP_004743551.1|  hypothetical protein MCAN_00651...  40.4    0.078
gi|153877936|ref|ZP_02004421.1|  nucleic acid-binding protein,con...  40.4    0.096
gi|330465116|ref|YP_004402859.1|  toxin [Verrucosispora maris AB-...  40.0    0.12 


>gi|15607689|ref|NP_215063.1| hypothetical protein Rv0549c [Mycobacterium tuberculosis H37Rv]
 gi|15839946|ref|NP_334983.1| hypothetical protein MT0574 [Mycobacterium tuberculosis CDC1551]
 gi|148660318|ref|YP_001281841.1| hypothetical protein MRA_0556 [Mycobacterium tuberculosis H37Ra]
 61 more sequence titles
 Length=137

 Score =  264 bits (674),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%)

Query  1    VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ  60
            +RASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ
Sbjct  1    MRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ  60

Query  61   RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL  120
            RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL
Sbjct  61   RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL  120

Query  121  TTDERLARAWPSAHAIG  137
            TTDERLARAWPSAHAIG
Sbjct  121  TTDERLARAWPSAHAIG  137


>gi|167968378|ref|ZP_02550655.1| hypothetical protein MtubH3_10224 [Mycobacterium tuberculosis 
H37Ra]
 gi|289744262|ref|ZP_06503640.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308231586|ref|ZP_07412990.2| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308395796|ref|ZP_07669348.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|289684790|gb|EFD52278.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308216759|gb|EFO76158.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308367245|gb|EFP56096.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=126

 Score =  241 bits (615),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 125/126 (99%), Positives = 126/126 (100%), Gaps = 0/126 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD
Sbjct  1    MVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  60

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP  131
            AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP
Sbjct  61   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP  120

Query  132  SAHAIG  137
            SAHAIG
Sbjct  121  SAHAIG  126


>gi|31791731|ref|NP_854224.1| hypothetical protein Mb0564c [Mycobacterium bovis AF2122/97]
 gi|121636467|ref|YP_976690.1| hypothetical protein BCG_0594c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224988939|ref|YP_002643626.1| hypothetical protein JTY_0564 [Mycobacterium bovis BCG str. Tokyo 
172]
 6 more sequence titles
 Length=102

 Score =  177 bits (450),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 91/92 (99%), Positives = 92/92 (100%), Gaps = 0/92 (0%)

Query  1   VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ  60
           +RASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ
Sbjct  1   MRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ  60

Query  61  RAGALTVAYVDAALEELRQVPVTRHGLSSLLA  92
           RAGALTVAYVDAALEELRQVPVTRHGLSSLLA
Sbjct  61  RAGALTVAYVDAALEELRQVPVTRHGLSSLLA  92


>gi|256371478|ref|YP_003109302.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans 
DSM 10331]
 gi|256008062|gb|ACU53629.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=146

 Score =  114 bits (286),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 66/126 (53%), Positives = 84/126 (67%), Gaps = 2/126 (1%)

Query  11   QVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV  70
            + VVDASA+VDLL   ++   AVR R+A  A+HAPAH DAEVLSALGR+ RA +L    V
Sbjct  21   EAVVDASALVDLLL-DNELGRAVRRRIAGHALHAPAHVDAEVLSALGRLHRADSLDAGTV  79

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAW  130
            +  L EL   P+ RH +  LL G W+RR  LRL DA+Y+ELA + G+ L+TTD RL R  
Sbjct  80   EVKLRELAAAPIERHPVHDLLLGTWARRQELRLVDAIYIELAVSRGVPLVTTDRRL-RGA  138

Query  131  PSAHAI  136
            PS   +
Sbjct  139  PSVEVV  144


>gi|297625029|ref|YP_003706463.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297166209|gb|ADI15920.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134

 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 46/119 (39%), Positives = 59/119 (50%), Gaps = 1/119 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTA-MHAPAHFDAEVLSALGRMQRAGALTVAYV  70
            +V+DASA V  L R     + +R R+ R   +H P  FD EVL AL R +R   ++ A  
Sbjct  2    IVLDASAGVSFLLRIEPAYAPLRERVLRAGTLHVPQLFDLEVLHALRRYERQRFISPARA  61

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
            + A   LR++   RH    L    W  R  L   DA YV LAE     L+T D RL RA
Sbjct  62   ERAFARLRELRCERHPHVPLAERVWELRANLSAYDATYVALAEILEAPLITLDARLGRA  120


>gi|333990432|ref|YP_004523046.1| hypothetical protein JDM601_1792 [Mycobacterium sp. JDM601]
 gi|333486400|gb|AEF35792.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=129

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 49/119 (42%), Positives = 66/119 (56%), Gaps = 2/119 (1%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDA+A+VD L    D    +R+ LA   +HAPA  D EV+SAL  + R G L+ A   
Sbjct  2    IVVDAAALVDALTGV-DGTDELRSELADEELHAPALLDFEVVSALRGLTRGGQLSAARAH  60

Query  72   AALEELRQVPVTRH-GLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             AL +   + + R  G + L   A++ RD L   DA YV LAE     +LT D RLAR+
Sbjct  61   DALADFDALAIRRWPGSAELRLRAFTLRDNLTAYDAAYVALAEALECAVLTRDRRLARS  119


>gi|86740207|ref|YP_480607.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86567069|gb|ABD10878.1| PilT protein-like [Frankia sp. CcI3]
Length=133

 Score = 60.5 bits (145),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 42/117 (36%), Positives = 58/117 (50%), Gaps = 0/117 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +V+D SA+V+ L  T D    VRA   R  + AP   D E  S L  + R G L      
Sbjct  2    IVLDTSALVEFLVGTDDVADVVRALATRERIAAPHAVDLECASTLRGLARGGKLPEGEAS  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLAR  128
             ALE L ++ + R+G + LL   W  R  +   DA Y+ LAET    L+T + +L R
Sbjct  62   RALELLGRMNLRRYGHAPLLPRIWELRHNMWPYDAAYIALAETLNADLVTANRKLDR  118


>gi|84494959|ref|ZP_00994078.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
 gi|84384452|gb|EAQ00332.1| hypothetical protein JNB_09174 [Janibacter sp. HTCC2649]
Length=131

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 44/119 (37%), Positives = 65/119 (55%), Gaps = 2/119 (1%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLA-RTAMHAPAHFDAEVLSALGRMQRAGALTVAYV  70
            +V+DASA+VD L   S     +R  +A    + AP     EV S L R++ AG +T    
Sbjct  2    IVLDASALVDFLL-LSPGWEQIRGHIAGDVQLAAPDLLSLEVSSTLWRLECAGTITSEES  60

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             + L +  ++ + R  +  L A AW+ R +LR++DA YV LA      LLTTD++LAR 
Sbjct  61   ASCLTQAGRLAIERVPMLDLTADAWAMRHSLRISDAYYVALARQLRWPLLTTDQKLARG  119


>gi|134102274|ref|YP_001107935.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291003763|ref|ZP_06561736.1| hypothetical protein SeryN2_04507 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133914897|emb|CAM05010.1| hypothetical protein SACE_5826 [Saccharopolyspora erythraea NRRL 
2338]
Length=129

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 41/120 (35%), Positives = 62/120 (52%), Gaps = 5/120 (4%)

Query  13   VVDASAMVDLLA--RTSDRCSA-VRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAY  69
            +VDASA++DLL   R + R    + +  A++  H P   D EV++ L + +R+G+LT A 
Sbjct  1    MVDASAVLDLLLQLRRAHRIGELISSPFAQS--HVPDTIDREVINVLRKRERSGSLTSAE  58

Query  70   VDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             +    E   +P   H         W  R    + DA YV LAE+    L+T+DE+LAR 
Sbjct  59   AETVFGEFLLLPFEVHDARPFAPRVWGLRSVCSVGDAYYVSLAESLDATLITSDEKLARG  118


>gi|288917657|ref|ZP_06412020.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288350872|gb|EFC85086.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 47/119 (40%), Positives = 62/119 (53%), Gaps = 3/119 (2%)

Query  12   VVVDASAMVDLLA-RTSDRCSAVRARL-ARTAMHAPAHFDAEVLSALGRMQRAGALTVAY  69
            +VVDAS +VDLLA   S R  A R RL      +APAH D EV+SAL  + R  +    +
Sbjct  4    IVVDASVIVDLLAGDDSPRRKAARDRLTGGDVFYAPAHLDVEVISALRGLARRTSRLAEH  63

Query  70   VDAALEELRQVPVTRHGLSSLLAG-AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA  127
              + +  L ++P+ R  L+   A   W  R T+   DA YV LAE     LLT D + A
Sbjct  64   TPSLIASLIRLPIRRERLNGPTAQRVWELRQTMTAYDAGYVALAEQIDAALLTCDAKYA  122


>gi|284992100|ref|YP_003410654.1| PilT protein domain-containing protein [Geodermatophilus obscurus 
DSM 43160]
 gi|284065345|gb|ADB76283.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 44/119 (37%), Positives = 57/119 (48%), Gaps = 0/119 (0%)

Query  11   QVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV  70
             +VVDAS +V  L          R  +     HAP   D EVLSA+ R   +  L     
Sbjct  1    MIVVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAA  60

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
              A+  +R +PV RHG   LL  A   RD++   D +YV LAE  G  L+T D RL+ A
Sbjct  61   RDAVTAMRDLPVIRHGHDLLLDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHA  119


>gi|217979588|ref|YP_002363735.1| PilT protein domain-containing protein [Methylocella silvestris 
BL2]
 gi|217504964|gb|ACK52373.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=130

 Score = 57.0 bits (136),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 47/120 (40%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARL--ARTAMHAPAHFDAEVLSALGRMQRAGALTVAY  69
            +VVDASA+++ L RT      V  RL  A   +HAP   D EV   + R   +G +  A 
Sbjct  2    IVVDASALLEALLRTPS-AKTVEDRLFAAGQTLHAPHLLDVEVAQVIRRYALSGEIDRAR  60

Query  70   VDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
               AL +L  +P+ R+    LL   W  R+ L   DA YV LAE     LLT D RLA A
Sbjct  61   GGLALADLADLPLRRYPHDFLLPRIWDLRNNLTAYDAAYVALAEALDAPLLTRDRRLAAA  120


>gi|336179019|ref|YP_004584394.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859999|gb|AEH10473.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=135

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 63/125 (51%), Gaps = 1/125 (0%)

Query  13   VVDASAMVDLLARTSDRCSAVRARLAR-TAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            V+D SA+V  L        AVR RLA   ++ AP   D E++SAL  M R   +T     
Sbjct  7    VIDCSALVRTLTDQGAGGVAVRRRLAGLESLAAPGLLDYEIVSALFGMLRGNKITKRETT  66

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP  131
             A+ + + +P+ RH    L          L   DA YV LAE  GL L+T+D R+AR+  
Sbjct  67   KAVADYQILPLVRHETLILWRRVHELHHNLSAYDAQYVALAEALGLPLITSDTRIARSGT  126

Query  132  SAHAI  136
            +A A+
Sbjct  127  AACAV  131


>gi|15608858|ref|NP_216236.1| hypothetical protein Rv1720c [Mycobacterium tuberculosis H37Rv]
 gi|15841182|ref|NP_336219.1| hypothetical protein MT1761 [Mycobacterium tuberculosis CDC1551]
 gi|31792908|ref|NP_855401.1| hypothetical protein Mb1749c [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=129

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 42/118 (36%), Positives = 62/118 (53%), Gaps = 1/118 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +V+DASA V+L+  T+   +AV  RL    +HAPAHFD EV+ A+ +      ++     
Sbjct  2    IVLDASAAVELML-TTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGL  60

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
              +     +PV R  L      A+  R T  + D  YV LAE  G+ L+T D RLA++
Sbjct  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118


>gi|87124166|ref|ZP_01080016.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
 gi|86168735|gb|EAQ69992.1| hypothetical protein RS9917_11161 [Synechococcus sp. RS9917]
Length=127

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 51/118 (44%), Positives = 61/118 (52%), Gaps = 4/118 (3%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            VVVDAS +VD L        A RARLA   + AP   DAE+LS L R+  A  L   +  
Sbjct  2    VVVDASVLVDALLLDG----AARARLAEANLQAPELIDAELLSVLRRLVLAERLGEQHAL  57

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             AL   +++ + RH    L   AW  R  L   DA+YV LAE  G  LLT D R ARA
Sbjct  58   QALATSQRLGLRRHTSRHLWPRAWELRTNLSAYDAIYVALAEQLGTTLLTADARAARA  115


>gi|340626727|ref|YP_004745179.1| hypothetical protein MCAN_17311 [Mycobacterium canettii CIPT 
140010059]
 gi|340004917|emb|CCC44063.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=129

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 41/118 (35%), Positives = 60/118 (51%), Gaps = 1/118 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +V+DASA V+L+  T    +  R RL    +HAPAHFD EV+ A+ +      ++     
Sbjct  2    IVLDASAAVELMLATPAGAAVAR-RLRGETVHAPAHFDVEVIGAIHQAVVRQLISDHEGL  60

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
              +     +PV R  L      A+  R T  + D  YV LAE  G+ L+T D RLA++
Sbjct  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118


>gi|227832924|ref|YP_002834631.1| hypothetical protein cauri_1100 [Corynebacterium aurimucosum 
ATCC 700975]
 gi|262182587|ref|ZP_06042008.1| hypothetical protein CaurA7_01220 [Corynebacterium aurimucosum 
ATCC 700975]
 gi|227453940|gb|ACP32693.1| hypothetical protein cauri_1100 [Corynebacterium aurimucosum 
ATCC 700975]
Length=131

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 1/122 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +V+DASA ++ L +  D               AP+H   E L+ L R++RAGA+  A   
Sbjct  4    LVIDASAAIEFLLK-RDALQRHSTAYPEADFIAPSHMPLECLNVLKRLERAGAIDSATAS  62

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWP  131
                ++ +  +    +  +    WSRR T  + D+ YV ++      LL+ D RL  AWP
Sbjct  63   FLANDVMEFNIELISVGDIANHVWSRRHTFSIYDSAYVAVSNIFEAPLLSRDTRLMAAWP  122

Query  132  SA  133
            ++
Sbjct  123  NS  124


>gi|87300649|ref|ZP_01083491.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
 gi|87284520|gb|EAQ76472.1| hypothetical protein WH5701_04355 [Synechococcus sp. WH 5701]
Length=127

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 51/118 (44%), Positives = 60/118 (51%), Gaps = 4/118 (3%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            VVVDAS +VD L        A R RLA   + AP   DAE+LS L R+  A  L   +  
Sbjct  2    VVVDASVLVDALLIQG----AARDRLAEANLQAPDLIDAELLSVLRRLVLADQLAEQHAL  57

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             AL   +++ + RH    L   AW  R  L   DALYV LAE  G  LLT D R ARA
Sbjct  58   QALATAQRLGLRRHVSRHLWPRAWELRSNLTAYDALYVALAEELGATLLTGDSRAARA  115


>gi|218295256|ref|ZP_03496092.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244459|gb|EED10984.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=132

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 46/118 (39%), Positives = 62/118 (53%), Gaps = 1/118 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +V+DASA  + L RT      V A +    + APA  DAEVL+ + +   +G L+     
Sbjct  4    LVLDASAAAEYLLRTP-LGRQVAALVEGKRLFAPALLDAEVLAVVRKATLSGRLSPTRAQ  62

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             ALE+L   P+ R     LL  A++ RD L   DALYV LA+     +LT D  LARA
Sbjct  63   EALEDLFSWPLFRVDHGPLLLPAFALRDRLTAYDALYVALAQRLSAPILTADGPLARA  120


>gi|111224206|ref|YP_715000.1| hypothetical protein FRAAL4817 [Frankia alni ACN14a]
 gi|111151738|emb|CAJ63458.1| hypothetical protein; putative PIN domain [Frankia alni ACN14a]
Length=109

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 35/86 (41%), Positives = 47/86 (55%), Gaps = 0/86 (0%)

Query  44   APAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRL  103
            AP   D E++SAL  M+R G LT   +  A+ + + +P+ RH    L         TL  
Sbjct  13   APGLLDYEMISALFGMRRGGKLTEREMGKAVADYQLLPLVRHETLVLWRRVRELHHTLSA  72

Query  104  TDALYVELAETAGLVLLTTDERLARA  129
             DA YV LAET GL L+T+D R+AR 
Sbjct  73   YDAQYVALAETLGLPLITSDARIARG  98


>gi|326903335|gb|EGE50268.1| toxin [Mycobacterium tuberculosis W-148]
Length=129

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 41/118 (35%), Positives = 61/118 (52%), Gaps = 1/118 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +V+DASA V+L+  T+   +AV  RL    + APAHFD EV+ A+ +      ++     
Sbjct  2    IVLDASAAVELML-TTPAGAAVARRLRGETVRAPAHFDVEVIGAIRQAVVRQLISDHEGL  60

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
              +     +PV R  L      A+  R T  + D  YV LAE  G+ L+T D RLA++
Sbjct  61   VVVVNFLSLPVRRWPLKPFTQRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQS  118


>gi|240168730|ref|ZP_04747389.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=162

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 44/126 (35%), Positives = 59/126 (47%), Gaps = 0/126 (0%)

Query  4    SPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAG  63
            S TS    +VVDAS +   L   +      R RLA   + AP   D EV+S   R   A 
Sbjct  21   SATSGRIVIVVDASVLAVALGDDASDGRLARERLADETLAAPELIDLEVVSVWRRQVAAK  80

Query  64   ALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTD  123
             +      +A+ +L  +P+ R     LL   W  +  L   DA YV LAE   +VL+T D
Sbjct  81   RMPARRAASAVADLTNLPLRRSSHQPLLHRVWELQHVLTAYDAAYVALAEALDIVLVTAD  140

Query  124  ERLARA  129
             RL+RA
Sbjct  141  ARLSRA  146


>gi|336178825|ref|YP_004584200.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859805|gb|AEH10279.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=133

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 39/118 (34%), Positives = 56/118 (48%), Gaps = 2/118 (1%)

Query  13   VVDASAMVDLLA-RTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            VVD S ++D+L+ R  D     R    RT +HAP H D EV S +  +     +T    +
Sbjct  6    VVDCSLVIDVLSVRNGDEVLRQRLSAPRT-LHAPHHLDVEVASTVRGLAAGKKITDHRGE  64

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
              L +  ++ +TRH +       W  R  L   DA Y+ LAE  G  LLT D ++  A
Sbjct  65   QMLADYARLRITRHPVWPYHPRLWELRHNLGAYDAAYIALAEALGCELLTGDTKIKNA  122


>gi|240170953|ref|ZP_04749612.1| hypothetical protein MkanA1_16703 [Mycobacterium kansasii ATCC 
12478]
Length=129

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 40/118 (34%), Positives = 62/118 (53%), Gaps = 1/118 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +V+DASA V+L+  T    +  R RL    +HAPAH D EV+ A+ R      ++     
Sbjct  2    IVLDASAAVELVLATPPGAAVAR-RLRDETVHAPAHIDVEVIGAIRRAVVRRLISDHEGV  60

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             A+ +   + + R  +      A+  R T  + DA+YV LAE  G+ L+T D RLA++
Sbjct  61   VAVADFLSLQIRRWPIKPFAQRAYQLRTTHIVADAVYVALAEGFGVRLITCDGRLAQS  118


>gi|152966078|ref|YP_001361862.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
 gi|151360595|gb|ABS03598.1| PilT protein-like [Kineococcus radiotolerans SRS30216]
Length=100

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 36/88 (41%), Positives = 45/88 (52%), Gaps = 0/88 (0%)

Query  42   MHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTL  101
            + AP   D EV S L R   +G L     D A  +L  +P+ R G   LL   W  R T+
Sbjct  2    LTAPEVIDLEVASVLRRAAASGRLPDRRADLAWNDLIDLPLRRAGHRPLLRRCWELRHTV  61

Query  102  RLTDALYVELAETAGLVLLTTDERLARA  129
               DA YV LAE   +VL+T D RL+RA
Sbjct  62   TSYDAAYVALAEALDIVLVTADARLSRA  89


>gi|145225776|ref|YP_001136454.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218262|gb|ABP47666.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=155

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 49/129 (38%), Positives = 61/129 (48%), Gaps = 0/129 (0%)

Query  1    VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQ  60
            VR   TS P  +VVDAS +   L          R RL   A+ AP   D EV S   R  
Sbjct  13   VRRWMTSGPNVIVVDASVLAVALGDDGADGRRARQRLTGEALAAPELIDLEVASVWRRHV  72

Query  61   RAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLL  120
             A  +T    DA + +L  +P+ R     LL   W+ R T+   DA Y  LAE   +VL+
Sbjct  73   AAKLMTARRADAGVSDLEDLPLRRCSHRPLLERIWALRRTVTPYDAAYAALAEALEVVLV  132

Query  121  TTDERLARA  129
            T D RLARA
Sbjct  133  TADARLARA  141


>gi|336177502|ref|YP_004582877.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334858482|gb|AEH08956.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=131

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 39/119 (33%), Positives = 56/119 (48%), Gaps = 1/119 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLAR-TAMHAPAHFDAEVLSALGRMQRAGALTVAYV  70
            +VVDAS + + L    +R    R  L   T   AP H+  EV S +  +     ++    
Sbjct  2    IVVDASVLANALVYADERGQRARVALGHDTEWAAPEHWMVEVFSVMHGLTLGKKISEERA  61

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             +A+  L  + V    + +LL   W  R  +   DA YV LAE   L L+T+D RLARA
Sbjct  62   RSAIARLPHLGVDHVRIDALLPRMWQLRSGISGYDAAYVALAEARDLALVTSDSRLARA  120


>gi|333025632|ref|ZP_08453696.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
 gi|332745484|gb|EGJ75925.1| putative PilT protein-like protein [Streptomyces sp. Tu6071]
Length=102

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 34/90 (38%), Positives = 42/90 (47%), Gaps = 0/90 (0%)

Query  40   TAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRD  99
            T ++APA  D E  +    + RAG +T    D A+ +L   P+ R     LL   W  R 
Sbjct  2    TEVYAPALIDLEFANVTRGLLRAGKITEHMADRAVRKLPSFPMRRVKHEGLLFRVWELRH  61

Query  100  TLRLTDALYVELAETAGLVLLTTDERLARA  129
                 DA YV LAE  G  LLT D RL R 
Sbjct  62   NYSPYDASYVALAEQLGATLLTGDARLQRG  91


>gi|271964589|ref|YP_003338785.1| PilT protein domain-containing protein [Streptosporangium roseum 
DSM 43021]
 gi|270507764|gb|ACZ86042.1| PilT protein domain protein [Streptosporangium roseum DSM 43021]
Length=137

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 57/120 (48%), Gaps = 6/120 (5%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDAS +  LLA        +R RLAR  +HAPA  D E+ S +      G   V   +
Sbjct  3    LVVDASIVFRLLANVKGD-DLLRQRLARK-VHAPALIDVEIASVVRGHVVTGKPEVRISE  60

Query  72   A----ALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLA  127
            A     LE   Q+ + RH +  L       R+ L   D +YV LAE  G+ +LT D + A
Sbjct  61   ARAQIMLERYAQLKIVRHPMLPLQPRVLELRNNLTAYDGMYVALAELLGVPMLTDDAKFA  120


>gi|313836325|gb|EFS74039.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA2]
 gi|314928789|gb|EFS92620.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL044PA1]
 gi|314971175|gb|EFT15273.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA3]
 gi|328906462|gb|EGG26237.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
humerusii P08]
Length=197

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 34/115 (30%), Positives = 53/115 (47%), Gaps = 1/115 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VV+ S + ++L  ++  C+A + +       AP H  AE+   +  +     +T A   
Sbjct  3    LVVEVSVLAEMLVGSTVGCAAWQ-QWGGEEFIAPQHLSAEIAHVVRNLSLGQLITDAEAM  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL  126
              L + R   V  + +  L+  AW  R  +   DALYV LA   G  LLT D RL
Sbjct  62   QILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTRDHRL  116


>gi|336118169|ref|YP_004572938.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
 gi|334685950|dbj|BAK35535.1| hypothetical protein MLP_25210 [Microlunatus phosphovorus NM-1]
Length=128

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 44/79 (56%), Gaps = 0/79 (0%)

Query  51   EVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVE  110
            EV SA+ R+++ G LT     AA+E+L  +P+    L +LL   W  R  L   DA YV 
Sbjct  36   EVASAVRRLEQRGELTARRAAAAMEDLMALPLQVARLRTLLPRCWELRHNLTPYDAAYVT  95

Query  111  LAETAGLVLLTTDERLARA  129
            LAE +   L+T D RLA A
Sbjct  96   LAEFSESPLVTADRRLAAA  114


>gi|297161843|gb|ADI11555.1| hypothetical protein SBI_08437 [Streptomyces bingchenggensis 
BCW-1]
Length=139

 Score = 47.4 bits (111),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 41/124 (34%), Positives = 61/124 (50%), Gaps = 6/124 (4%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTA-MHAPAHFDAEVLSAL---GRMQRAG--AL  65
            +VVD SA++  L+        VR R+A+   + AP   D E++SAL    R +R G   L
Sbjct  2    IVVDCSALIFFLSDEGPTGHLVRERVAKEDRLAAPHLIDYEIMSALLGLARGRRGGEPKL  61

Query  66   TVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDER  125
            +   +  A+   R + + RH    L          L + DA YV LAE  GL L+T+D R
Sbjct  62   SEKQLRKAVATYRDLAIDRHETLILWERVKGLSSNLSVYDAQYVALAEGLGLPLITSDAR  121

Query  126  LARA  129
            + R+
Sbjct  122  IDRS  125


>gi|289753016|ref|ZP_06512394.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289693603|gb|EFD61032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=127

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 33/94 (36%), Positives = 46/94 (49%), Gaps = 0/94 (0%)

Query  34   RARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAG  93
            R  +A   +H P   D+E+ S L R+ +   L  A    AL+  R++ VTR+ +  L   
Sbjct  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRWALQTWRRLAVTRYPVVGLFER  79

Query  94   AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA  127
             W  R  L   DA YV LAE     L+T D RL+
Sbjct  80   IWEIRANLSAYDASYVALAEALNCALVTADLRLS  113


>gi|312195768|ref|YP_004015829.1| PilT protein domain protein [Frankia sp. EuI1c]
 gi|311227104|gb|ADP79959.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=140

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 44/118 (38%), Positives = 54/118 (46%), Gaps = 0/118 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            VV+DASA V LL       + V   +   A+ AP     E  + L R   AG L  +   
Sbjct  9    VVLDASAAVALLTDAGPAGTWVAKVVDGAALFAPELMPFEAANILRRHLLAGILDPSEAT  68

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
             A  +L  +PV R   +SL   AW  R  L   DA YV LAE     L+T D RL RA
Sbjct  69   LAHADLLAMPVRRLAYASLADRAWDLRANLTAYDAAYVALAEALPAPLVTLDARLGRA  126


>gi|15608100|ref|NP_215475.1| hypothetical protein Rv0960 [Mycobacterium tuberculosis H37Rv]
 gi|15840385|ref|NP_335422.1| hypothetical protein MT0988 [Mycobacterium tuberculosis CDC1551]
 gi|31792149|ref|NP_854642.1| hypothetical protein Mb0985 [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=127

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 33/94 (36%), Positives = 46/94 (49%), Gaps = 0/94 (0%)

Query  34   RARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAG  93
            R  +A   +H P   D+E+ S L R+ +   L  A    AL+  R++ VTR+ +  L   
Sbjct  20   RQLIAAERLHVPHLVDSEIASGLRRLAQRDRLGAADGRRALQTWRRLAVTRYPVVGLFER  79

Query  94   AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA  127
             W  R  L   DA YV LAE     L+T D RL+
Sbjct  80   IWEIRANLSAYDASYVALAEALNCALVTADLRLS  113


>gi|50843515|ref|YP_056742.1| hypothetical protein PPA2073 [Propionibacterium acnes KPA171202]
 gi|335052922|ref|ZP_08545781.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|50841117|gb|AAT83784.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|315107867|gb|EFT79843.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL030PA1]
 gi|333768546|gb|EGL45727.1| PIN domain protein [Propionibacterium sp. 434-HC2]
 gi|335278469|gb|AEH30374.1| hypothetical protein TIB1ST10_10525 [Propionibacterium acnes 
6609]
Length=129

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 36/115 (32%), Positives = 51/115 (45%), Gaps = 1/115 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDAS + ++L   S    A   +       AP H  AE+   +  +     +T A   
Sbjct  3    LVVDASVLAEMLV-GSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL  126
              L + R   V  + +  L+  AW  R  +   DALYV LA   G+ LLT D RL
Sbjct  62   RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGVCLLTCDRRL  116


>gi|313827108|gb|EFS64822.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL063PA1]
Length=129

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 35/115 (31%), Positives = 53/115 (47%), Gaps = 1/115 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDAS + ++L  ++   +A + +       AP H  AE+   +  +     +T A   
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQ-QWGGEEFIAPQHLPAEIAHVVRNLSSGHLITDAEAM  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL  126
              L + R   V  + +  L+  AW  R  +   DALYV LA   G  LLT D RL
Sbjct  62   RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|313832495|gb|EFS70209.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL056PA1]
Length=129

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 35/115 (31%), Positives = 54/115 (47%), Gaps = 1/115 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDAS + ++L  ++   +A + +       AP H  AE+   +  +     +T A   
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQ-QWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL  126
              L + R + V  + +  L+  AW  R  +   DALYV LA   G  LLT D RL
Sbjct  62   RILSDFRALKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|289426009|ref|ZP_06427756.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes SK187]
 gi|289427948|ref|ZP_06429652.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J165]
 gi|295131584|ref|YP_003582247.1| PIN domain protein [Propionibacterium acnes SK137]
 55 more sequence titles
 Length=129

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 35/115 (31%), Positives = 53/115 (47%), Gaps = 1/115 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDAS + ++L  ++   +A + +       AP H  AE+   +  +     +T A   
Sbjct  3    LVVDASVLAEMLVGSTVGHAAWQ-QWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL  126
              L + R   V  + +  L+  AW  R  +   DALYV LA   G  LLT D RL
Sbjct  62   RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|340625973|ref|YP_004744425.1| hypothetical protein MCAN_09641 [Mycobacterium canettii CIPT 
140010059]
 gi|340004163|emb|CCC43301.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 33/94 (36%), Positives = 46/94 (49%), Gaps = 0/94 (0%)

Query  34   RARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAG  93
            R  +A   +H P   D+E+ S L R+ +   L  A    AL+  R++ VTR+ +  L   
Sbjct  20   RQLIAAERLHVPHLVDSEIASGLRRLVQRDRLGAADGWRALQTWRRLAVTRYPVVGLFER  79

Query  94   AWSRRDTLRLTDALYVELAETAGLVLLTTDERLA  127
             W  R  L   DA YV LAE     L+T D RL+
Sbjct  80   IWEIRANLSAYDASYVALAEALNCELVTADLRLS  113


>gi|282854837|ref|ZP_06264171.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes J139]
 gi|335051617|ref|ZP_08544531.1| PIN domain protein [Propionibacterium sp. 409-HC1]
 gi|342213313|ref|ZP_08706038.1| PIN domain protein [Propionibacterium sp. CC003-HC2]
 7 more sequence titles
 Length=129

 Score = 45.1 bits (105),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 36/115 (32%), Positives = 50/115 (44%), Gaps = 1/115 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDAS + ++L   S    A   +       AP H  AE+   +  +     +T A   
Sbjct  3    LVVDASVLAEMLV-GSTVGRAAWQQWGGEEFIAPQHLPAEIAHVVRNLSLGHLITDAEAM  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL  126
              L + R   V  + +  L+  AW  R  +   DALYV LA   G  LLT D RL
Sbjct  62   RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|315446137|ref|YP_004079016.1| nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
 gi|315264440|gb|ADU01182.1| predicted nucleic acid-binding protein, contains PIN domain [Mycobacterium 
sp. Spyr1]
Length=133

 Score = 44.3 bits (103),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 45/119 (38%), Positives = 56/119 (48%), Gaps = 0/119 (0%)

Query  11   QVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV  70
             +VVDAS +   L          R RL   A+ AP   D EV S   R   A  +T    
Sbjct  1    MIVVDASVLAVALGDDGADGRLARQRLTGEALAAPELIDLEVASVWRRHVAAKLMTARRA  60

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
            DAA+ +L  +P+ R     LL   W  R T+   DA Y  LAE   +VL+T D RLARA
Sbjct  61   DAAVSDLADLPLRRCSHRPLLERIWVLRRTVTPYDAAYAALAEALEVVLVTADVRLARA  119


>gi|314967266|gb|EFT11365.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL082PA2]
 gi|314981768|gb|EFT25861.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA3]
 gi|315092528|gb|EFT64504.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL110PA4]
 gi|315094771|gb|EFT66747.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL060PA1]
 gi|327328620|gb|EGE70380.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL103PA1]
Length=129

 Score = 43.9 bits (102),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 36/115 (32%), Positives = 50/115 (44%), Gaps = 1/115 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVD  71
            +VVDAS + ++L   S    A   +       AP H  AE+   +  +     +T A   
Sbjct  3    LVVDASVLAEMLV-GSTVGRAAWQQWGGEEFIAPQHLLAEIAHVVRNLSLGHLITDAEAM  61

Query  72   AALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERL  126
              L + R   V  + +  L+  AW  R  +   DALYV LA   G  LLT D RL
Sbjct  62   RILSDFRAFKVELYPVEPLMVDAWEMRHNVSAYDALYVVLARLLGACLLTCDRRL  116


>gi|268318400|ref|YP_003292118.1| PilT domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|345301879|ref|YP_004831073.1| PilT domain-containing protein [Rhodothermus marinus SG0.5JP17-172]
 gi|262335934|gb|ACY49730.1| PilT domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|345113953|gb|AEN74784.1| PilT domain-containing protein [Rhodothermus marinus SG0.5JP17-172]
Length=142

 Score = 43.9 bits (102),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 47/130 (37%), Positives = 58/130 (45%), Gaps = 10/130 (7%)

Query  8    PPEQVVVDASAMVDLLARTSD-----RCSAVRARLARTAMHAPAHFDAEVLSALGRMQRA  62
            P   + +DAS +V L+AR  D     R  A  A   R A  AP     EV +AL R  R 
Sbjct  2    PGSWICIDASIVVRLVARPDDHVVLERWDAWLAEGRRLA--APTLLFYEVTNALHRYHRH  59

Query  63   GALTVAYVDAALEELRQVPVTRHGLSSLLAGAWSRRDTLRL---TDALYVELAETAGLVL  119
            G +    V +ALE    +PV  HG +SL   A      L L    DA Y+ LAE      
Sbjct  60   GWMKEGTVRSALEAALALPVELHGDASLHERALEMATELGLAAAYDAHYLALAERLRAEF  119

Query  120  LTTDERLARA  129
             T D +L RA
Sbjct  120  WTADGKLVRA  129


>gi|154246134|ref|YP_001417092.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154160219|gb|ABS67435.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=141

 Score = 43.5 bits (101),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 44/124 (36%), Positives = 60/124 (49%), Gaps = 10/124 (8%)

Query  11   QVVVDASAMVDLLARTSDRCSAVRARLARTA-MHAPAHFDAEVLSALGRMQRAGALTVAY  69
            + VVDAS ++       DR  A RA LA  A + AP    AEV +AL + +RAGA+T   
Sbjct  3    RFVVDASIVLKWFFDEGDRAEA-RALLASGASLLAPTLVQAEVANALWKKKRAGAMT---  58

Query  70   VDAALEELRQVPVTRHGLSSL-----LAGAWSRRDTLRLTDALYVELAETAGLVLLTTDE  124
            V+ A+    Q+P     L  +     +A   S R    + D +Y+ LA       LT D 
Sbjct  59   VEDAIHICAQLPPFFQRLFPVEPLLPVAIELSFRLDHAIYDCIYLSLARETDCPFLTADR  118

Query  125  RLAR  128
            RLAR
Sbjct  119  RLAR  122


>gi|311896050|dbj|BAJ28458.1| hypothetical protein KSE_26460 [Kitasatospora setae KM-6054]
Length=134

 Score = 42.7 bits (99),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 44/119 (37%), Positives = 58/119 (49%), Gaps = 1/119 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARLARTAMH-APAHFDAEVLSALGRMQRAGALTVAYV  70
            +VVDASA+V  L+    R  A RA LA      AP H   EV+ +L  +  A  LT   V
Sbjct  2    IVVDASAVVLSLSDRGPRGDAARALLAADPEWVAPEHVVIEVMQSLRGLYLAKQLTAEEV  61

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
                  L  + + +  ++ LL   W  +D L   DA YV +AE  G  L+T D RL RA
Sbjct  62   AELTRRLPGLAIRKVEVAPLLGRIWELKDNLTPDDAAYVAVAELHGAPLVTADLRLMRA  120


>gi|15607207|ref|NP_214579.1| hypothetical protein Rv0065 [Mycobacterium tuberculosis H37Rv]
 gi|15839444|ref|NP_334481.1| hypothetical protein MT0071 [Mycobacterium tuberculosis CDC1551]
 gi|31791242|ref|NP_853735.1| hypothetical protein Mb0066 [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=133

 Score = 40.8 bits (94),  Expect = 0.075, Method: Compositional matrix adjust.
 Identities = 35/98 (36%), Positives = 47/98 (48%), Gaps = 1/98 (1%)

Query  33   VRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSS-LL  91
            +R  L  +  +AP   DAEV  AL R   +  ++     AAL+ L  +   R+  S  L+
Sbjct  25   LRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLI  84

Query  92   AGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
               W  R  +   DALYV LA    + LLT D RLA A
Sbjct  85   EYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA  122


>gi|340625099|ref|YP_004743551.1| hypothetical protein MCAN_00651 [Mycobacterium canettii CIPT 
140010059]
 gi|340003289|emb|CCC42406.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133

 Score = 40.4 bits (93),  Expect = 0.078, Method: Compositional matrix adjust.
 Identities = 35/98 (36%), Positives = 47/98 (48%), Gaps = 1/98 (1%)

Query  33   VRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSS-LL  91
            +R  L  +  +AP   DAEV  AL R   +  ++     AAL+ L  +   R+  S  L+
Sbjct  25   LRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLI  84

Query  92   AGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
               W  R  +   DALYV LA    + LLT D RLA A
Sbjct  85   EYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAA  122


>gi|153877936|ref|ZP_02004421.1| nucleic acid-binding protein,contains PIN domain [Beggiatoa sp. 
PS]
 gi|152065600|gb|EDN65579.1| nucleic acid-binding protein,contains PIN domain [Beggiatoa sp. 
PS]
Length=141

 Score = 40.4 bits (93),  Expect = 0.096, Method: Compositional matrix adjust.
 Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 2/90 (2%)

Query  42   MHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQVPVTRHGLSSLLAGAWS-RRDT  100
            +H P  F  E ++ + + QR G +     D  + E++QVP+  H    +L  A+    +T
Sbjct  34   LHVPHLFLLEFINVVCKKQRRGDINAEESDFIINEIQQVPLKWHDDRLVLTKAYEIANET  93

Query  101  LR-LTDALYVELAETAGLVLLTTDERLARA  129
             R L D LY+ LA +    ++T D +   A
Sbjct  94   QRSLYDCLYLSLAISLDSEMVTADLKFYEA  123


>gi|330465116|ref|YP_004402859.1| toxin [Verrucosispora maris AB-18-032]
 gi|328808087|gb|AEB42259.1| toxin [Verrucosispora maris AB-18-032]
Length=138

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 39/119 (33%), Positives = 56/119 (48%), Gaps = 1/119 (0%)

Query  12   VVVDASAMVDLLARTSDRCSAVRARL-ARTAMHAPAHFDAEVLSALGRMQRAGALTVAYV  70
            +VVDAS + D L        A RA L       AP+H   EV+S +      G L +A  
Sbjct  7    IVVDASVLADALVDDGPVGDAARAELTGDPHWAAPSHLLIEVMSVIRGKVLGGKLGLARA  66

Query  71   DAALEELRQVPVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARA  129
              A++ L  + +   G+++LL   W  R  +   DA Y+  AE     L+T D RLA+A
Sbjct  67   QEAIDTLPSLVIDEVGVATLLDRMWQLRGNVTAYDAAYIAAAELLACPLVTGDGRLAKA  125



Lambda     K      H
   0.320    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128325363320




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40