BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0572c Length=113 Score E Sequences producing significant alignments: (Bits) Value gi|15607712|ref|NP_215086.1| hypothetical protein Rv0572c [Mycob... 236 1e-60 gi|15839971|ref|NP_335008.1| hypothetical protein MT0599 [Mycoba... 234 4e-60 gi|340625599|ref|YP_004744051.1| hypothetical protein MCAN_05751... 232 2e-59 gi|240169280|ref|ZP_04747939.1| hypothetical protein MkanA1_0819... 129 1e-28 gi|120403896|ref|YP_953725.1| hypothetical protein Mvan_2913 [My... 116 1e-24 >gi|15607712|ref|NP_215086.1| hypothetical protein Rv0572c [Mycobacterium tuberculosis H37Rv] gi|148660341|ref|YP_001281864.1| hypothetical protein MRA_0579 [Mycobacterium tuberculosis H37Ra] gi|167967021|ref|ZP_02549298.1| hypothetical protein MtubH3_02758 [Mycobacterium tuberculosis H37Ra] 11 more sequence titles Length=113 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%) Query 1 MGEHAIKRHMRQRKPTKHPLAQKRGARILVFTDDPRRSVLIVPGCHLDSMRREKNAYYFQ 60 MGEHAIKRHMRQRKPTKHPLAQKRGARILVFTDDPRRSVLIVPGCHLDSMRREKNAYYFQ Sbjct 1 MGEHAIKRHMRQRKPTKHPLAQKRGARILVFTDDPRRSVLIVPGCHLDSMRREKNAYYFQ 60 Query 61 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL 113 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL Sbjct 61 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL 113 >gi|15839971|ref|NP_335008.1| hypothetical protein MT0599 [Mycobacterium tuberculosis CDC1551] gi|31791754|ref|NP_854247.1| hypothetical protein Mb0587c [Mycobacterium bovis AF2122/97] gi|121636490|ref|YP_976713.1| hypothetical protein BCG_0617c [Mycobacterium bovis BCG str. Pasteur 1173P2] 60 more sequence titles Length=113 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 112/113 (99%), Positives = 112/113 (99%), Gaps = 0/113 (0%) Query 1 MGEHAIKRHMRQRKPTKHPLAQKRGARILVFTDDPRRSVLIVPGCHLDSMRREKNAYYFQ 60 MGEHAIKRHMRQRKPTKHPLAQKRGARILV TDDPRRSVLIVPGCHLDSMRREKNAYYFQ Sbjct 1 MGEHAIKRHMRQRKPTKHPLAQKRGARILVLTDDPRRSVLIVPGCHLDSMRREKNAYYFQ 60 Query 61 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL 113 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL Sbjct 61 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL 113 >gi|340625599|ref|YP_004744051.1| hypothetical protein MCAN_05751 [Mycobacterium canettii CIPT 140010059] gi|340003789|emb|CCC42915.1| hypothetical protein MCAN_05751 [Mycobacterium canettii CIPT 140010059] Length=113 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 111/113 (99%), Positives = 111/113 (99%), Gaps = 0/113 (0%) Query 1 MGEHAIKRHMRQRKPTKHPLAQKRGARILVFTDDPRRSVLIVPGCHLDSMRREKNAYYFQ 60 MGEHAIKRHMRQRKPTKHPLAQKRGARILV TDDPRR VLIVPGCHLDSMRREKNAYYFQ Sbjct 1 MGEHAIKRHMRQRKPTKHPLAQKRGARILVLTDDPRRGVLIVPGCHLDSMRREKNAYYFQ 60 Query 61 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL 113 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL Sbjct 61 DGNALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFEHSSPSRSPQSDDL 113 >gi|240169280|ref|ZP_04747939.1| hypothetical protein MkanA1_08199 [Mycobacterium kansasii ATCC 12478] Length=130 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/97 (65%), Positives = 74/97 (77%), Gaps = 2/97 (2%) Query 4 HAIKRHMRQRKPTKHPLAQKRGARILVFTDDPRRSVLIVPGCHLDSMRREKNAYYFQDGN 63 H + R Q K A +RGARILV TDDPRRSV+IVPGCH+DSMR+E +AY+F+DGN Sbjct 35 HPVARKAGQNATAK--TAVERGARILVLTDDPRRSVVIVPGCHIDSMRQEGDAYFFEDGN 92 Query 64 ALVGMVVSGGTVEYDADDRTYVVQLTDGRHTTESSFE 100 ALVGM+V GGTVEY DRTYVV+LTDGRHT + E Sbjct 93 ALVGMIVEGGTVEYHRADRTYVVRLTDGRHTPTPAAE 129 >gi|120403896|ref|YP_953725.1| hypothetical protein Mvan_2913 [Mycobacterium vanbaalenii PYR-1] gi|119956714|gb|ABM13719.1| hypothetical protein Mvan_2913 [Mycobacterium vanbaalenii PYR-1] Length=119 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 52/73 (72%), Positives = 62/73 (85%), Gaps = 0/73 (0%) Query 24 RGARILVFTDDPRRSVLIVPGCHLDSMRREKNAYYFQDGNALVGMVVSGGTVEYDADDRT 83 RGARI+V T DP R V I+PGCHLDS+ R++NAY+F+DGN LVGM+V GGTVEY A DRT Sbjct 47 RGARIVVLTGDPGRRVEILPGCHLDSLGRKENAYFFEDGNELVGMIVEGGTVEYHAADRT 106 Query 84 YVVQLTDGRHTTE 96 YVV+LTDG+HT E Sbjct 107 YVVRLTDGQHTDE 119 Lambda K H 0.318 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127560148160 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40