BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0580c
Length=163
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607720|ref|NP_215094.1| hypothetical protein Rv0580c [Mycob... 331 2e-89
gi|340625610|ref|YP_004744062.1| hypothetical protein MCAN_05861... 331 2e-89
gi|15839982|ref|NP_335019.1| hypothetical protein MT0609 [Mycoba... 331 3e-89
gi|254363538|ref|ZP_04979584.1| hypothetical protein TBHG_00577 ... 330 3e-89
gi|240169290|ref|ZP_04747949.1| hypothetical protein MkanA1_0824... 265 2e-69
gi|296168382|ref|ZP_06850287.1| conserved hypothetical protein [... 240 5e-62
gi|183980969|ref|YP_001849260.1| hypothetical protein MMAR_0948 ... 239 9e-62
gi|254823495|ref|ZP_05228496.1| hypothetical protein MintA_26433... 234 3e-60
gi|342858895|ref|ZP_08715549.1| hypothetical protein MCOL_08463 ... 234 3e-60
gi|126433402|ref|YP_001069093.1| hypothetical protein Mjls_0792 ... 175 2e-42
gi|108797775|ref|YP_637972.1| hypothetical protein Mmcs_0797 [My... 173 8e-42
gi|240168688|ref|ZP_04747347.1| hypothetical protein MkanA1_0520... 170 5e-41
gi|145225813|ref|YP_001136491.1| hypothetical protein Mflv_5239 ... 169 1e-40
gi|118616493|ref|YP_904825.1| hypothetical protein MUL_0699 [Myc... 168 2e-40
gi|120402043|ref|YP_951872.1| hypothetical protein Mvan_1028 [My... 161 3e-38
gi|300787961|ref|YP_003768252.1| hypothetical protein AMED_6112 ... 116 1e-24
gi|22477125|gb|AAM97367.1| RubW [Streptomyces collinus] 86.7 1e-15
gi|332669285|ref|YP_004452293.1| hypothetical protein Celf_0766 ... 84.0 8e-15
gi|21039501|gb|AAM33666.1|AF509565_14 GrhN [Streptomyces sp. JP95] 73.9 7e-12
gi|111019765|ref|YP_702737.1| hypothetical protein RHA1_ro02774 ... 70.5 9e-11
gi|331696123|ref|YP_004332362.1| hypothetical protein Psed_2296 ... 69.7 1e-10
gi|152966000|ref|YP_001361784.1| hypothetical protein Krad_2035 ... 68.6 3e-10
gi|258652020|ref|YP_003201176.1| hypothetical protein Namu_1797 ... 67.4 6e-10
gi|322369620|ref|ZP_08044184.1| hypothetical protein ZOD2009_090... 61.2 5e-08
gi|298251123|ref|ZP_06974927.1| conserved hypothetical protein [... 58.9 2e-07
gi|302545788|ref|ZP_07298130.1| hypothetical protein SSOG_06213 ... 58.5 3e-07
gi|256390668|ref|YP_003112232.1| hypothetical protein Caci_1468 ... 56.2 2e-06
gi|290960630|ref|YP_003491812.1| hypothetical protein SCAB_62561... 53.5 9e-06
gi|169631209|ref|YP_001704858.1| hypothetical protein MAB_4131 [... 47.0 0.001
gi|298251786|ref|ZP_06975589.1| hypothetical protein Krac_0826 [... 45.8 0.002
gi|152966549|ref|YP_001362333.1| hypothetical protein Krad_2595 ... 43.5 0.010
gi|254820392|ref|ZP_05225393.1| hypothetical protein MintA_10706... 38.9 0.23
gi|54025468|ref|YP_119710.1| hypothetical protein nfa34980 [Noca... 38.9 0.24
gi|296138498|ref|YP_003645741.1| hypothetical protein Tpau_0765 ... 38.5 0.30
gi|296169875|ref|ZP_06851487.1| conserved hypothetical protein [... 38.5 0.32
gi|120404365|ref|YP_954194.1| hypothetical protein Mvan_3391 [My... 37.4 0.74
gi|299751463|ref|XP_001830284.2| MMS2 [Coprinopsis cinerea okaya... 37.4 0.84
gi|126435659|ref|YP_001071350.1| hypothetical protein Mjls_3080 ... 37.0 1.1
gi|108800030|ref|YP_640227.1| hypothetical protein Mmcs_3064 [My... 37.0 1.1
gi|300784947|ref|YP_003765238.1| hypothetical protein AMED_3043 ... 36.6 1.2
gi|145223721|ref|YP_001134399.1| hypothetical protein Mflv_3134 ... 36.6 1.2
gi|315444049|ref|YP_004076928.1| hypothetical protein Mspyr1_245... 36.6 1.4
gi|301609205|ref|XP_002934175.1| PREDICTED: putative Polycomb gr... 36.2 1.7
gi|331696348|ref|YP_004332587.1| hypothetical protein Psed_2531 ... 36.2 1.7
gi|226304721|ref|YP_002764679.1| hypothetical protein RER_12320 ... 35.8 2.0
gi|158288470|ref|XP_310337.6| AGAP003786-PA [Anopheles gambiae s... 35.4 2.5
gi|262201953|ref|YP_003273161.1| hypothetical protein Gbro_2015 ... 35.4 2.7
gi|325003018|ref|ZP_08124130.1| hypothetical protein PseP1_29825... 34.7 5.1
gi|86739712|ref|YP_480112.1| 3-hydroxyacyl-CoA dehydrogenase [Fr... 34.3 6.1
gi|308501805|ref|XP_003113087.1| hypothetical protein CRE_25283 ... 34.3 6.2
>gi|15607720|ref|NP_215094.1| hypothetical protein Rv0580c [Mycobacterium tuberculosis H37Rv]
gi|31791762|ref|NP_854255.1| hypothetical protein Mb0595c [Mycobacterium bovis AF2122/97]
gi|121636498|ref|YP_976721.1| hypothetical protein BCG_0625c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
30 more sequence titles
Length=163
Score = 331 bits (849), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/163 (100%), Positives = 163/163 (100%), Gaps = 0/163 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS
Sbjct 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG
Sbjct 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS 163
VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS
Sbjct 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS 163
>gi|340625610|ref|YP_004744062.1| hypothetical protein MCAN_05861 [Mycobacterium canettii CIPT
140010059]
gi|340003800|emb|CCC42926.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=163
Score = 331 bits (848), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/163 (99%), Positives = 163/163 (100%), Gaps = 0/163 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS
Sbjct 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG
Sbjct 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS 163
VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVA+RLTPADNS
Sbjct 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAVRLTPADNS 163
>gi|15839982|ref|NP_335019.1| hypothetical protein MT0609 [Mycobacterium tuberculosis CDC1551]
gi|148821782|ref|YP_001286536.1| hypothetical protein TBFG_10591 [Mycobacterium tuberculosis F11]
gi|167969002|ref|ZP_02551279.1| hypothetical protein MtubH3_13627 [Mycobacterium tuberculosis
H37Ra]
20 more sequence titles
Length=192
Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/163 (100%), Positives = 163/163 (100%), Gaps = 0/163 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS
Sbjct 30 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 89
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG
Sbjct 90 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 149
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS 163
VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS
Sbjct 150 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS 192
>gi|254363538|ref|ZP_04979584.1| hypothetical protein TBHG_00577 [Mycobacterium tuberculosis str.
Haarlem]
gi|289552833|ref|ZP_06442043.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|308370452|ref|ZP_07421544.2| hypothetical protein TMCG_03786 [Mycobacterium tuberculosis SUMu003]
14 more sequence titles
Length=188
Score = 330 bits (847), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/163 (100%), Positives = 163/163 (100%), Gaps = 0/163 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS
Sbjct 26 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 85
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG
Sbjct 86 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 145
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS 163
VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS
Sbjct 146 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPADNS 188
>gi|240169290|ref|ZP_04747949.1| hypothetical protein MkanA1_08249 [Mycobacterium kansasii ATCC
12478]
Length=161
Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 126/160 (79%), Positives = 141/160 (89%), Gaps = 0/160 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MT+QSYAVD+ HPP+ALLR VNP+L LL TPLAGP+R QLMV++FTGRKTGR FS+PLS
Sbjct 1 MTEQSYAVDVGHPPSALLRAVNPVLGFLLGTPLAGPIRKQLMVLNFTGRKTGRQFSLPLS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AHVIDN+LYALT AGWK NF GA AQVVYDGKTTAMRGELIRDR VV++LFLR AQ+YG
Sbjct 61 AHVIDNELYALTGAGWKQNFRGGAPAQVVYDGKTTAMRGELIRDREVVTDLFLRCAQSYG 120
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPA 160
KR QRM+GL FRD RIPTLEEFAEAVDRLKL A++LTPA
Sbjct 121 PKRAQRMMGLKFRDPRIPTLEEFAEAVDRLKLAAVKLTPA 160
>gi|296168382|ref|ZP_06850287.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896729|gb|EFG76363.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=161
Score = 240 bits (612), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 116/160 (73%), Positives = 134/160 (84%), Gaps = 0/160 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
M +Q +A+D HPP+ALLR+VNP+L LL TPLAGP R QLMV+SFTGRKTGR FS+P+S
Sbjct 1 MAEQPHAIDAGHPPSALLRVVNPMLGFLLRTPLAGPARKQLMVLSFTGRKTGRPFSLPVS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AHVID LYALT A WK NF GAA QVVYDGKTTAMRGELIRDRAVVS+LFLR A++YG
Sbjct 61 AHVIDGQLYALTGAPWKQNFRGGAAVQVVYDGKTTAMRGELIRDRAVVSDLFLRCAESYG 120
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPA 160
+R QRM+GL FRD+R+PT EEFAEAVDR+ L A+RLT A
Sbjct 121 AQRAQRMIGLKFRDQRVPTREEFAEAVDRMHLGAVRLTRA 160
>gi|183980969|ref|YP_001849260.1| hypothetical protein MMAR_0948 [Mycobacterium marinum M]
gi|183174295|gb|ACC39405.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=161
Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 114/160 (72%), Positives = 135/160 (85%), Gaps = 0/160 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MT+QSY V++ HPP+ALLR +NP+L LL TPLAG L QLMV+ FTGRK+GRHFS+PLS
Sbjct 1 MTEQSYPVEVGHPPSALLRAINPVLGFLLRTPLAGSLGNQLMVLDFTGRKSGRHFSLPLS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AHVIDN LYALT A WK+NFS GA AQVV++GKTTAMRG+LIRD VV++L LR A++YG
Sbjct 61 AHVIDNVLYALTGAAWKYNFSGGATAQVVHNGKTTAMRGDLIRDPDVVADLCLRCARSYG 120
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPA 160
+R QRM+GL FRDRRIPTLEEF EAVDRL+ AI+LTPA
Sbjct 121 PRRAQRMMGLKFRDRRIPTLEEFTEAVDRLQFAAIKLTPA 160
>gi|254823495|ref|ZP_05228496.1| hypothetical protein MintA_26433 [Mycobacterium intracellulare
ATCC 13950]
Length=161
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/159 (71%), Positives = 128/159 (81%), Gaps = 0/159 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
M +QSYAVD HPP+AL RLVNP++ LL +P AG R Q MV+SFTGRKTGR +S+PLS
Sbjct 1 MAEQSYAVDAGHPPSALFRLVNPVMGLLLRSPFAGAARKQFMVLSFTGRKTGRTYSVPLS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AH ID LYALT A WK NF DG +VVYDG TTAMRGELIRDRAVVS+L LRAA++YG
Sbjct 61 AHAIDGQLYALTGAPWKQNFRDGGPVEVVYDGTTTAMRGELIRDRAVVSDLLLRAAESYG 120
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTP 159
V R QRM+GL FRDRRIPT +EFAEAVDRL L A+RL+P
Sbjct 121 VARAQRMIGLKFRDRRIPTRDEFAEAVDRLHLGAVRLSP 159
>gi|342858895|ref|ZP_08715549.1| hypothetical protein MCOL_08463 [Mycobacterium colombiense CECT
3035]
gi|342133136|gb|EGT86339.1| hypothetical protein MCOL_08463 [Mycobacterium colombiense CECT
3035]
Length=161
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/161 (69%), Positives = 131/161 (82%), Gaps = 0/161 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MT+QSYAVD HPP+AL+RLVNP + LL +PLAG R Q MV++FTGRKTGR +SIPLS
Sbjct 1 MTEQSYAVDAGHPPSALMRLVNPAMGFLLRSPLAGLARNQFMVLNFTGRKTGRPYSIPLS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AH+ID LYALT AGWK NF G QVVYDGK+TAMRGELIRDR VS+L R A++YG
Sbjct 61 AHLIDGQLYALTGAGWKQNFRGGGPVQVVYDGKSTAMRGELIRDRGAVSDLLSRCAESYG 120
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPAD 161
V+R QRM+GL FRD+RIPT +EFAEAVDRL L A+RL+PA+
Sbjct 121 VQRAQRMIGLKFRDQRIPTRDEFAEAVDRLHLGAVRLSPAE 161
>gi|126433402|ref|YP_001069093.1| hypothetical protein Mjls_0792 [Mycobacterium sp. JLS]
gi|126233202|gb|ABN96602.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=157
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/154 (55%), Positives = 109/154 (71%), Gaps = 1/154 (0%)
Query 7 AVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDN 66
++D+AHPP ALL ++NP LR+ L TPL L+ Q MVV+FTGRKTGR FSIP+SAH +D
Sbjct 4 SIDVAHPPQALLNVINPALRTALRTPLGTALK-QFMVVTFTGRKTGRRFSIPVSAHHLDG 62
Query 67 DLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQR 126
DLY + EA WK+NF GA A+V + GKT M GELI D A V+++ R A+ YG K+ Q+
Sbjct 63 DLYVILEAKWKYNFRGGAPAEVTHSGKTAHMLGELITDPATVADIVHRVAENYGAKKAQQ 122
Query 127 MLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPA 160
+GL FR +P+ +EF A RL + AIRLTPA
Sbjct 123 TMGLKFRGNIVPSKDEFQSAATRLGIAAIRLTPA 156
>gi|108797775|ref|YP_637972.1| hypothetical protein Mmcs_0797 [Mycobacterium sp. MCS]
gi|119866866|ref|YP_936818.1| hypothetical protein Mkms_0812 [Mycobacterium sp. KMS]
gi|108768194|gb|ABG06916.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692955|gb|ABL90028.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=160
Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/160 (53%), Positives = 110/160 (69%), Gaps = 1/160 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
M + ++D+AHPP ALL ++NP LR+ L TPL L+ Q MVV+FTGRKTGR FSIP+S
Sbjct 1 MEVMAESIDVAHPPQALLNVINPALRTALRTPLGTALK-QFMVVTFTGRKTGRRFSIPVS 59
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
AH +D DLY + EA WK+NF GA A+V + G T M GELI D A V+++ R A+ YG
Sbjct 60 AHHLDGDLYVILEAKWKYNFRGGAPAEVTHSGNTAHMLGELITDPATVADIVHRVAENYG 119
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPA 160
K+ Q+ +GL FR +P+ +EF A RL + AIRLTPA
Sbjct 120 AKKAQQTMGLKFRGNIVPSKDEFQSAATRLGIAAIRLTPA 159
>gi|240168688|ref|ZP_04747347.1| hypothetical protein MkanA1_05205 [Mycobacterium kansasii ATCC
12478]
Length=162
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/162 (51%), Positives = 110/162 (68%), Gaps = 1/162 (0%)
Query 1 MTDQSYAVD-IAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPL 59
M Q YAV+ ++ L ++ P + LL T AG MV+SFTGRKTGR +SIP+
Sbjct 1 MPKQLYAVEGVSDGGQRALTIIRPFVNLLLRTRFAGSAGKHFMVLSFTGRKTGREYSIPI 60
Query 60 SAHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAY 119
SAH +D+ L+ LT WK+NF +GA A++ YDGK M GELI DRA V++L R A++Y
Sbjct 61 SAHWLDDGLFVLTRMRWKNNFRNGATAEIYYDGKPMTMHGELIEDRATVADLVHRCAESY 120
Query 120 GVKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPAD 161
GV+R Q ++GL FRD+RIP++EEFAEA +RL +R TPAD
Sbjct 121 GVRRAQLIIGLKFRDKRIPSVEEFAEAAERLNWAVVRFTPAD 162
>gi|145225813|ref|YP_001136491.1| hypothetical protein Mflv_5239 [Mycobacterium gilvum PYR-GCK]
gi|315442479|ref|YP_004075358.1| hypothetical protein Mspyr1_08250 [Mycobacterium sp. Spyr1]
gi|145218299|gb|ABP47703.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315260782|gb|ADT97523.1| hypothetical protein Mspyr1_08250 [Mycobacterium sp. Spyr1]
Length=158
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/151 (53%), Positives = 108/151 (72%), Gaps = 1/151 (0%)
Query 8 VDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDND 67
+D HPP A+L +VNP LR L TPL G L + M+VSFTGRK+G+ +S P+SAH +D D
Sbjct 6 IDAGHPPEAMLAIVNPALRLALKTPLGG-LLSDFMLVSFTGRKSGKRYSTPVSAHQLDGD 64
Query 68 LYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRM 127
LY + EA WK+NF DGA AQV + GKT MRGELI DR+ V+ + R A +YGVK+ QR
Sbjct 65 LYVVLEAQWKYNFRDGADAQVSHRGKTRTMRGELITDRSAVAGICERVATSYGVKKAQRQ 124
Query 128 LGLSFRDRRIPTLEEFAEAVDRLKLVAIRLT 158
+G++F R+PT+ E+ +AV R+K+ I+LT
Sbjct 125 MGMAFDGGRLPTIAEWEDAVGRMKIAVIKLT 155
>gi|118616493|ref|YP_904825.1| hypothetical protein MUL_0699 [Mycobacterium ulcerans Agy99]
gi|118568603|gb|ABL03354.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=193
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/111 (73%), Positives = 95/111 (86%), Gaps = 0/111 (0%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
MT+QSY V++ HPP+ALLR +NP+L LL TPLAG L QLMV+ FTGRK+GRHFS+PLS
Sbjct 1 MTEQSYPVEVGHPPSALLRAINPVLGFLLRTPLAGSLGNQLMVLDFTGRKSGRHFSLPLS 60
Query 61 AHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSEL 111
AHVIDN LYALT A WK+NFSDGA AQVV++GKTTAMRG+LIRD VV++L
Sbjct 61 AHVIDNVLYALTGAAWKYNFSDGATAQVVHNGKTTAMRGDLIRDPDVVADL 111
>gi|120402043|ref|YP_951872.1| hypothetical protein Mvan_1028 [Mycobacterium vanbaalenii PYR-1]
gi|119954861|gb|ABM11866.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=157
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/152 (54%), Positives = 107/152 (71%), Gaps = 2/152 (1%)
Query 7 AVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDN 66
A+D P ALLR+VNP LR L TPL G L M+V+FTGRK+G+ ++IP+SAH +D
Sbjct 5 AIDT-QTPEALLRVVNPTLRLALKTPLGGFL-GDFMLVAFTGRKSGKEYAIPVSAHRLDG 62
Query 67 DLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQR 126
+LYA+ EA WK+NF GA AQV + GKT MRGELI D V+ + R A +YG ++ QR
Sbjct 63 ELYAVAEAQWKYNFRGGAEAQVSHRGKTRTMRGELITDPPTVAGICERVAASYGPRKAQR 122
Query 127 MLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLT 158
+G++FRD R+PT E+ EAV RLK+ AI+LT
Sbjct 123 QMGMAFRDNRLPTTTEWEEAVTRLKIAAIKLT 154
>gi|300787961|ref|YP_003768252.1| hypothetical protein AMED_6112 [Amycolatopsis mediterranei U32]
gi|299797475|gb|ADJ47850.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340529536|gb|AEK44741.1| hypothetical protein RAM_31330 [Amycolatopsis mediterranei S699]
Length=157
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/151 (41%), Positives = 92/151 (61%), Gaps = 1/151 (0%)
Query 8 VDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDND 67
V+ PPA L++ +N +LR++L +PL G + M+++F GR+TGR + +P++AH
Sbjct 5 VEWHQPPAPLVKTLNAVLRAVLPSPL-GRGVGEFMLLAFAGRRTGRRYRVPVTAHGDAQG 63
Query 68 LYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRM 127
ALT AGW+ NF GA V + G+TT MRG L+ DRA V+ ++L G++R RM
Sbjct 64 RCALTPAGWRLNFRGGADVDVTFAGRTTPMRGVLVEDRAEVARIYLDRMTELGMRRAARM 123
Query 128 LGLSFRDRRIPTLEEFAEAVDRLKLVAIRLT 158
+GL F R+PTL+E E R +RL+
Sbjct 124 IGLKFPLGRLPTLDEVVELAGREHFGVVRLS 154
>gi|22477125|gb|AAM97367.1| RubW [Streptomyces collinus]
Length=177
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/144 (35%), Positives = 79/144 (55%), Gaps = 6/144 (4%)
Query 25 LRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALTEAGWKHNFSDGA 84
+R LL P GP+ +L ++ F+GR++GR +++P H + L T +GW++NF+ G+
Sbjct 22 MRELLSRPAPGPVAERLALLHFSGRRSGRPYTVPAGVHTLGGALVVATGSGWRYNFAGGS 81
Query 85 AAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRMLGLSFRDRRIPTLEEFA 144
++ + G+ +R L+ D + +L + YG + R LGL+ R P L EF
Sbjct 82 PGELTWRGQRRPVRFTLVDDAERSARGYLELYRRYG-EEAPRRLGLAVRGAGTPALAEFR 140
Query 145 EAVDR--LKLVAIRL---TPADNS 163
EAV R L LV + L PA+NS
Sbjct 141 EAVGRHGLSLVEVTLVTHAPAENS 164
>gi|332669285|ref|YP_004452293.1| hypothetical protein Celf_0766 [Cellulomonas fimi ATCC 484]
gi|332338323|gb|AEE44906.1| hypothetical protein Celf_0766 [Cellulomonas fimi ATCC 484]
Length=194
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/158 (32%), Positives = 78/158 (50%), Gaps = 2/158 (1%)
Query 2 TDQSYAVDIAHPPAALLRLVNPILRSLLHTP-LAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
T AV++ HPP ++R +P++R LL +P AG + +L++V TGR+TGR + +P+
Sbjct 29 TSDRPAVEVTHPPRWVVRAADPVMRRLLSSPRTAGRMGDELLLVHVTGRRTGRTYDVPVG 88
Query 61 AHV-IDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAY 119
D L +T W+ N D +V + G R EL+ D V+E++
Sbjct 89 CRPGPDGRLVVVTHGRWRVNLRDLPDVEVTWRGLRRPARAELVEDPQAVAEVYRGRIDPL 148
Query 120 GVKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRL 157
+ R GL R+P EE +AV R + +RL
Sbjct 149 APRASARRTGLRLAHDRVPATEEVVDAVRRAHVGVVRL 186
>gi|21039501|gb|AAM33666.1|AF509565_14 GrhN [Streptomyces sp. JP95]
Length=147
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/133 (31%), Positives = 68/133 (52%), Gaps = 2/133 (1%)
Query 27 SLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALTEAGWKHNFSDGAAA 86
+LL P GP+ L ++ FTGR++G ++P H + L+ T + W+HNF+ GA
Sbjct 3 ALLTGPEPGPVAEHLALLHFTGRRSGAAHTVPAGLHRVGGGLFVATGSPWRHNFAGGAPG 62
Query 87 QVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRMLGLSFRDRRIPTLEEFAEA 146
++ + G + +R L+ D + + + YG + QR LG++ PT +F A
Sbjct 63 EITWRGNRSPVRFTLVTDGERTARGYHELYERYGPEAAQRRLGITVDAAATPTPADFRAA 122
Query 147 VDR--LKLVAIRL 157
V L LVA+ L
Sbjct 123 VTGIPLALVAVDL 135
>gi|111019765|ref|YP_702737.1| hypothetical protein RHA1_ro02774 [Rhodococcus jostii RHA1]
gi|110819295|gb|ABG94579.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=156
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/95 (36%), Positives = 52/95 (55%), Gaps = 0/95 (0%)
Query 8 VDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDND 67
V ++ PP L+RLVNP++R +L T G + ++ FTGR+TGR +P+ H +D
Sbjct 9 VRLSPPPPQLMRLVNPLVRRVLTTRSLGRRIRRQALIEFTGRRTGRTLRVPVCLHDVDGQ 68
Query 68 LYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELI 102
TE W+ NF+ GA V + G+ R L+
Sbjct 69 TLVFTERPWRRNFAGGAPVTVTHRGRVRRGRALLL 103
>gi|331696123|ref|YP_004332362.1| hypothetical protein Psed_2296 [Pseudonocardia dioxanivorans
CB1190]
gi|326950812|gb|AEA24509.1| hypothetical protein Psed_2296 [Pseudonocardia dioxanivorans
CB1190]
Length=155
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (32%), Positives = 74/145 (52%), Gaps = 2/145 (1%)
Query 13 PPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALT 72
PP L+ +NP++R L + L G + Q++++ TGR+TGR + IP+ + ++L +T
Sbjct 10 PPQRLIDAINPVVRGLAGSRLHGLVDDQVLILHVTGRRTGRRYDIPVGFADLGDELLVVT 69
Query 73 EAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRMLGLSF 132
+ W+ N G+ V + G+TT M + + A V+ RA + G + QR GL+
Sbjct 70 QHRWRTNLRGGSDVTVTHHGRTTPMTAVVTEEPAAVAATLARAVERIGRAQAQRRFGLTL 129
Query 133 RDRRIPTLEEFAEAVDRLKLVAIRL 157
D P E+ AV L I L
Sbjct 130 PDGYGP--EDLEAAVREYALATITL 152
>gi|152966000|ref|YP_001361784.1| hypothetical protein Krad_2035 [Kineococcus radiotolerans SRS30216]
gi|151360517|gb|ABS03520.1| hypothetical protein Krad_2035 [Kineococcus radiotolerans SRS30216]
Length=180
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/133 (37%), Positives = 71/133 (54%), Gaps = 6/133 (4%)
Query 13 PPAALLR-LVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYAL 71
PP L++ L NP++R L T R + V++ TGR+TGR F +P+ H +
Sbjct 44 PPRWLVQHLANPLVRRLAPTRWGS--RLPVAVLTVTGRRTGRRFEVPVGVHEVAGRRLVF 101
Query 72 TEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRMLGLS 131
T+A W+ NF GAAA+++ G+ +A+ L+ D A V LF RAA A G Q + L+
Sbjct 102 TDAPWRLNFRGGAAAELLSAGRLSAVHVRLVEDPAEVGALF-RAAFAAGTTPAQ--IALA 158
Query 132 FRDRRIPTLEEFA 144
P+ EE A
Sbjct 159 IPAGHDPSDEELA 171
>gi|258652020|ref|YP_003201176.1| hypothetical protein Namu_1797 [Nakamurella multipartita DSM
44233]
gi|258555245|gb|ACV78187.1| hypothetical protein Namu_1797 [Nakamurella multipartita DSM
44233]
Length=157
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/154 (29%), Positives = 69/154 (45%), Gaps = 0/154 (0%)
Query 5 SYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVI 64
+ +D PP L+ VNP++R L +PL L ++++ GR+TG + IP+ +
Sbjct 2 TTTIDRVVPPQRLITAVNPLVRWALRSPLHRWLDGSVLILHVLGRRTGHRYDIPVGFTEL 61
Query 65 DNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRG 124
+ L +T+ W+ N G QV G MR L D A V++ +G
Sbjct 62 GDRLVVITQHRWRRNLRGGRDVQVTRFGHRRWMRATLDDDPATVADTIAEFLGRFGAAGT 121
Query 125 QRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLT 158
+R LG+ PT +E + A L I LT
Sbjct 122 KRRLGIVIAGDTAPTHDELSAAARSFDLGIITLT 155
>gi|322369620|ref|ZP_08044184.1| hypothetical protein ZOD2009_09033 [Haladaptatus paucihalophilus
DX253]
gi|320550790|gb|EFW92440.1| hypothetical protein ZOD2009_09033 [Haladaptatus paucihalophilus
DX253]
Length=198
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/161 (30%), Positives = 76/161 (48%), Gaps = 10/161 (6%)
Query 8 VDIAHPPAALLRL----VNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHV 63
V+I PP L NP+LR LL + + +LM++S+ GR++G ++ P++
Sbjct 16 VEIRTPPEPFFLLERYVANPVLRRLLRSKAHWLVSNRLMLLSYVGRRSGTRYTTPVAYDR 75
Query 64 IDNDLYALT---EAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYG 120
++ L A T + W NF + A V G G D ++E A YG
Sbjct 76 REDTLVATTLRHHSNWWKNFREEHPATVWLRGTRRKTTGLATTDTREIAEFVRSALVRYG 135
Query 121 VKRGQRMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLTPAD 161
++R R LGL +PT++E EAV +LV +R + D
Sbjct 136 IERA-RWLGLKIEGDELPTVKEL-EAVA-PELVVVRFSVDD 173
>gi|298251123|ref|ZP_06974927.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
gi|297549127|gb|EFH82994.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
Length=162
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/94 (31%), Positives = 55/94 (59%), Gaps = 2/94 (2%)
Query 20 LVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALTEAG-WKH 78
+ NP+ +++L +PL G + ++L++++FTGRK+G+ F+ P+S +V D L G W
Sbjct 20 VFNPLSKTILRSPLHGVMSSKLLLITFTGRKSGKEFTTPIS-YVRQGDTLLLAVGGSWWK 78
Query 79 NFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELF 112
N GA + G+ E++ D+ +SE++
Sbjct 79 NLRGGATVWLRLHGERRFAVTEVVTDKEAMSEVY 112
>gi|302545788|ref|ZP_07298130.1| hypothetical protein SSOG_06213 [Streptomyces hygroscopicus ATCC
53653]
gi|302463406|gb|EFL26499.1| hypothetical protein SSOG_06213 [Streptomyces himastatinicus
ATCC 53653]
Length=170
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/153 (30%), Positives = 72/153 (48%), Gaps = 11/153 (7%)
Query 12 HPPAALL----RLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAH-VIDN 66
HPP RLV P+LRS LH ++G +LM++++ G K+GR F+IP++ +
Sbjct 20 HPPERFFNAANRLVRPLLRSRLHPLVSG----RLMLLTYEGAKSGRTFAIPVAYYRPAPG 75
Query 67 DLYAL-TEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQ 125
+++A GW NF + ++ G+ + DR V+ L Q G
Sbjct 76 EVWAFGARTGWMSNFRNRRTVRLRLRGREVRAEATAVEDREEVARLLEELVQRKGPG-AI 134
Query 126 RMLGLSFRDRRIPTLEEFAEAVDRLKLVAIRLT 158
R + F R PT EE A DR+++ L+
Sbjct 135 RDPFVGFPRDRHPTHEEAVAAADRVRIARFHLS 167
>gi|256390668|ref|YP_003112232.1| hypothetical protein Caci_1468 [Catenulispora acidiphila DSM
44928]
gi|256356894|gb|ACU70391.1| conserved hypothetical protein [Catenulispora acidiphila DSM
44928]
Length=163
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (35%), Positives = 51/94 (55%), Gaps = 1/94 (1%)
Query 20 LVNPILRSLLHTP-LAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALTEAGWKH 78
LVN I R+ L TP +A + L+++ GRK+G+ ++IP++ D + T+ GW
Sbjct 23 LVNAISRAALSTPGVAKGIGQNLILLYVYGRKSGKRYAIPIAYMAHDGKILIGTQFGWSR 82
Query 79 NFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELF 112
N G QV Y GK + E++ D V+EL+
Sbjct 83 NLRTGDPIQVRYKGKLRSADVEVVTDPDRVAELY 116
>gi|290960630|ref|YP_003491812.1| hypothetical protein SCAB_62561 [Streptomyces scabiei 87.22]
gi|260650156|emb|CBG73272.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=143
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/144 (30%), Positives = 67/144 (47%), Gaps = 6/144 (4%)
Query 17 LLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLY---ALTE 73
++R N ++R LL + L G L LM++++TGRK+GR +IP+ D +
Sbjct 1 MIRAANRLVRPLLASRLHGILSRFLMLLTYTGRKSGRRITIPVGYFDWDPGTVLASTFSH 60
Query 74 AGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRMLGLSFR 133
+ W N G + G+ +I D ++EL A R +M+GL
Sbjct 61 SNWIPNLRIGPTVHLRIHGRDYEAVPTVIEDHTAITELLAEFAHRKS-PREAKMVGLP-G 118
Query 134 DRRIPTLEEFAEAVDRLKLVAIRL 157
DR+ PT EE EA + + V RL
Sbjct 119 DRK-PTPEELHEAGETRRFVLFRL 141
>gi|169631209|ref|YP_001704858.1| hypothetical protein MAB_4131 [Mycobacterium abscessus ATCC 19977]
gi|169243176|emb|CAM64204.1| Hypothetical protein MAB_4131 [Mycobacterium abscessus]
Length=145
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query 21 VNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDND-LYALTEAGWKHN 79
VN ++R +L +PL L + + +FTGRK+G+ +++ + +V D D L T+ W N
Sbjct 11 VNKVVRGVLRSPLHPVLSGNIALFTFTGRKSGKEYNV-AATYVRDGDVLTIFTDRTWAKN 69
Query 80 FSDGAAAQVVYDGKTTAMRGELIRDRAV---VSELFLRA---AQAYGVKR 123
DG + GK EL + ++EL LR A+ + V+R
Sbjct 70 LRDGRPVTALVRGKRLEGTAELATGPQIAGPLTELLLRVPRDAKYHNVRR 119
>gi|298251786|ref|ZP_06975589.1| hypothetical protein Krac_0826 [Ktedonobacter racemifer DSM 44963]
gi|297546378|gb|EFH80246.1| hypothetical protein Krac_0826 [Ktedonobacter racemifer DSM 44963]
Length=106
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (27%), Positives = 53/107 (50%), Gaps = 2/107 (1%)
Query 1 MTDQSYAVDIAHPPAALLRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLS 60
M + V PP + +VN ++ +LLH+ L++++F GRK+G+ F+ P+
Sbjct 1 MNETHTTVRHLRPPRPVRIVVNALVTTLLHSRWHAMRSNHLLLLTFAGRKSGKAFTTPMR 60
Query 61 AHVIDNDLYALTEA-GWKHNFSDGAAAQVVYDGKTTAMRGELIRDRA 106
+V + + +T W N GA QV+ G+T E++ ++
Sbjct 61 -YVQEGETLRMTVVYPWWKNLVGGATVQVLLRGQTRTGTAEVLPEKV 106
>gi|152966549|ref|YP_001362333.1| hypothetical protein Krad_2595 [Kineococcus radiotolerans SRS30216]
gi|151361066|gb|ABS04069.1| hypothetical protein Krad_2595 [Kineococcus radiotolerans SRS30216]
Length=115
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query 19 RLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYAL------T 72
+LV P+L S +PL +R + V++TGR++GR S P+ +D+ +
Sbjct 13 KLVAPVLTSRWLSPL---VRRWMTTVTYTGRRSGRVISTPVGYKRHGDDVVEIPVMLPDK 69
Query 73 EAGWKHNFSDGAAAQVVYDGKTTAMRGELIRD 104
+A W++ DGA +V DG + G RD
Sbjct 70 KAWWRNFTGDGAPLTLVLDGSPRSGHGVATRD 101
>gi|254820392|ref|ZP_05225393.1| hypothetical protein MintA_10706 [Mycobacterium intracellulare
ATCC 13950]
Length=119
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/86 (34%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query 17 LLRLVNPILRSLLHTPLAGP-----LRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDL--- 68
LL P+L + A P LR + +V++TGR++GR FSIP++ +D+
Sbjct 10 LLMRAAPVLNKPVAAMAASPRFGAGLRRSITLVTYTGRRSGRTFSIPVAYRRRGDDIEIA 69
Query 69 YALTEAG-WKHNF-SDGAAAQVVYDG 92
+ EA W NF DGA + DG
Sbjct 70 ANMPEAKTWWRNFVGDGAPMSLTLDG 95
>gi|54025468|ref|YP_119710.1| hypothetical protein nfa34980 [Nocardia farcinica IFM 10152]
gi|54016976|dbj|BAD58346.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=118
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (30%), Positives = 41/81 (51%), Gaps = 6/81 (7%)
Query 18 LRLVNPILRSLLHTPLAGPLRTQ-LMVVSFTGRKTGRHFSIPLSAHVIDNDL-----YAL 71
LR N L +LL P+ GPL ++ L +++ GR++GR S P+ + +D+
Sbjct 11 LRGFNAGLSALLDVPVLGPLLSKGLARITYVGRRSGRTISTPVGYRRVGDDIVIGVAMPQ 70
Query 72 TEAGWKHNFSDGAAAQVVYDG 92
+ W++ DGA V +G
Sbjct 71 KKTWWRNFLGDGAPITVHING 91
>gi|296138498|ref|YP_003645741.1| hypothetical protein Tpau_0765 [Tsukamurella paurometabola DSM
20162]
gi|296026632|gb|ADG77402.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=112
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/43 (40%), Positives = 28/43 (66%), Gaps = 1/43 (2%)
Query 19 RLVNPILRSLLHTPLAGP-LRTQLMVVSFTGRKTGRHFSIPLS 60
++ N LL P+ GP L ++ VS+TGRK+G+ FS+P++
Sbjct 9 KVFNAAFTPLLSLPVIGPALGKSMVTVSYTGRKSGKQFSLPIA 51
>gi|296169875|ref|ZP_06851487.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895431|gb|EFG75133.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=125
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/79 (28%), Positives = 42/79 (54%), Gaps = 6/79 (7%)
Query 20 LVNPILRSLLHTP-LAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYAL-----TE 73
L+N + ++ +P L +R + +V++TGR++GR FSIP++ +++ +
Sbjct 17 LLNKPVAAMAASPRLGARMRRSIALVTYTGRRSGRTFSIPVAYRRRGDEIEIAANMPDAK 76
Query 74 AGWKHNFSDGAAAQVVYDG 92
W++ DGA V DG
Sbjct 77 TWWRNFVGDGAPMSVTLDG 95
>gi|120404365|ref|YP_954194.1| hypothetical protein Mvan_3391 [Mycobacterium vanbaalenii PYR-1]
gi|119957183|gb|ABM14188.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=120
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/83 (31%), Positives = 42/83 (51%), Gaps = 7/83 (8%)
Query 17 LLRLVNPILRSLLHTPLAGPL-RTQLMVVSFTGRKTGRHFSIPL----SAHVIDNDLYAL 71
L+ + N L+ P+ GPL R +V+ +TGR++G+ F P+ S VI +
Sbjct 13 LVGMFNAGAERLIDAPVVGPLIRRSTVVIRYTGRRSGQTFQTPVSYRKSGEVIAIRVMTP 72
Query 72 TEAGWKHNFS-DGAAAQVV-YDG 92
+ W NF+ DG ++ +DG
Sbjct 73 DKKTWWRNFTGDGGPITLMNFDG 95
>gi|299751463|ref|XP_001830284.2| MMS2 [Coprinopsis cinerea okayama7#130]
gi|298409385|gb|EAU91431.2| MMS2 [Coprinopsis cinerea okayama7#130]
Length=960
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/109 (26%), Positives = 52/109 (48%), Gaps = 3/109 (2%)
Query 53 RHFSIPLSAHVIDNDLYALTEAGWKHNFSDG-AAAQVVYDGKTTAMRGELIRDRAVVSEL 111
RH+ + ++ V ND + +A N G AAA Y G+ +RGE ++ ++++
Sbjct 418 RHYFLSIARQVWPNDPPSTAQAKESENKPVGYAAASAAYLGRMY-LRGEGVKQDPILAKA 476
Query 112 FLRAAQAYGVKRGQRMLGLSFRDRRIP-TLEEFAEAVDRLKLVAIRLTP 159
+ A G + Q LG+ +RD +P + + A + K+ A + P
Sbjct 477 WFERGAALGERECQNGLGIIYRDALVPGSRPDIKRANNYFKVAATQDLP 525
>gi|126435659|ref|YP_001071350.1| hypothetical protein Mjls_3080 [Mycobacterium sp. JLS]
gi|126235459|gb|ABN98859.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=121
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (33%), Positives = 36/65 (56%), Gaps = 9/65 (13%)
Query 18 LRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALTEAG-- 75
++ NP++R PLAG + + ++ TGRK+GR F P++A+ DN++ + G
Sbjct 11 IKYFNPVIR-----PLAGRV-PGIALIKHTGRKSGRRFETPVTAYRKDNEVAIVLGHGMT 64
Query 76 -WKHN 79
W N
Sbjct 65 DWARN 69
>gi|108800030|ref|YP_640227.1| hypothetical protein Mmcs_3064 [Mycobacterium sp. MCS]
gi|119869155|ref|YP_939107.1| hypothetical protein Mkms_3123 [Mycobacterium sp. KMS]
gi|108770449|gb|ABG09171.1| hypothetical protein Mmcs_3064 [Mycobacterium sp. MCS]
gi|119695244|gb|ABL92317.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=127
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (33%), Positives = 36/65 (56%), Gaps = 9/65 (13%)
Query 18 LRLVNPILRSLLHTPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALTEAG-- 75
++ NP++R PLAG + + ++ TGRK+GR F P++A+ DN++ + G
Sbjct 17 IKYFNPVIR-----PLAGRV-PGIALIKHTGRKSGRRFETPVTAYRKDNEVAIVLGHGMT 70
Query 76 -WKHN 79
W N
Sbjct 71 DWARN 75
>gi|300784947|ref|YP_003765238.1| hypothetical protein AMED_3043 [Amycolatopsis mediterranei U32]
gi|299794461|gb|ADJ44836.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340526379|gb|AEK41584.1| hypothetical protein RAM_15480 [Amycolatopsis mediterranei S699]
Length=119
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (31%), Positives = 42/81 (52%), Gaps = 7/81 (8%)
Query 10 IAHPPAALLRLVNPILRSLLHTPLAGPL-RTQLMVVSFTGRKTGRHFSIPL----SAHVI 64
+ P A+ R N + +L +P GP+ R +L +++TGR++GR FS P+ + V+
Sbjct 5 VPFPKNAVHRF-NTCVGALRTSPRLGPVVRRRLTEITYTGRRSGRTFSTPVGYRRAGEVV 63
Query 65 DNDLYALTEAGWKHNFS-DGA 84
+ W NF+ DGA
Sbjct 64 TIGVMMPEAKSWWRNFTGDGA 84
>gi|145223721|ref|YP_001134399.1| hypothetical protein Mflv_3134 [Mycobacterium gilvum PYR-GCK]
gi|145216207|gb|ABP45611.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=118
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (29%), Positives = 34/69 (50%), Gaps = 5/69 (7%)
Query 28 LLHTPLAGPL-RTQLMVVSFTGRKTGRHFSIPL----SAHVIDNDLYALTEAGWKHNFSD 82
L+ P+ GPL R ++V+ +TGR++GR F P+ S + + A W NF+
Sbjct 24 LMDAPIVGPLIRRSMVVIRYTGRRSGRTFETPVNYQRSGDRVVIRVMAPDSKTWWRNFTG 83
Query 83 GAAAQVVYD 91
+ + D
Sbjct 84 DGGSLTLRD 92
>gi|315444049|ref|YP_004076928.1| hypothetical protein Mspyr1_24510 [Mycobacterium sp. Spyr1]
gi|315262352|gb|ADT99093.1| hypothetical protein Mspyr1_24510 [Mycobacterium sp. Spyr1]
Length=115
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 35/64 (55%), Gaps = 6/64 (9%)
Query 28 LLHTPLAGPL-RTQLMVVSFTGRKTGRHFSIPLSAH-----VIDNDLYALTEAGWKHNFS 81
L+ P+ GPL R ++V+ +TGR++GR F P++ V+ + ++ W++
Sbjct 21 LMDAPIVGPLIRRSMVVIRYTGRRSGRTFETPVNYQRSGDRVVIRVMAPDSKTWWRNFTG 80
Query 82 DGAA 85
DG +
Sbjct 81 DGGS 84
>gi|301609205|ref|XP_002934175.1| PREDICTED: putative Polycomb group protein ASXL3 [Xenopus (Silurana)
tropicalis]
Length=2145
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 25/81 (31%), Positives = 41/81 (51%), Gaps = 8/81 (9%)
Query 8 VDIAHPPAALLRLVNPILRSLL--HTPLAGPLRTQ---LMVVSFTGRKTGRHFSIPLSAH 62
+DI P + L VN LR+L+ HT + P Q L+++ R+ G ++ LS
Sbjct 249 IDIETPGSIL---VNTNLRALINKHTFASLPQHFQQYLLLLLPEVDRQMGSDGALRLSNS 305
Query 63 VIDNDLYALTEAGWKHNFSDG 83
++N+ +A GWK S+G
Sbjct 306 ALNNEFFAYAAQGWKQRLSEG 326
>gi|331696348|ref|YP_004332587.1| hypothetical protein Psed_2531 [Pseudonocardia dioxanivorans
CB1190]
gi|326951037|gb|AEA24734.1| hypothetical protein Psed_2531 [Pseudonocardia dioxanivorans
CB1190]
Length=157
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/116 (29%), Positives = 55/116 (48%), Gaps = 24/116 (20%)
Query 16 ALLRLVNPILRSLLHTPLAGPLRTQLM---------VVSFTGRKTGRHFSIPLSAHVIDN 66
A++R V P+ HT L +R + M +++ TGR++GR +++PL H+ D
Sbjct 19 AIMRWVGPV-----HTALLRAVRGRAMWRFRGGDVVLLTHTGRRSGRQYTVPL-LHLRDG 72
Query 67 D--LYALTEAG------WKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLR 114
+ L A + G W N D A++ G+ A+ E + D A EL+ R
Sbjct 73 EDVLVAASNGGVDAEPQWWLNLQDSPYAEIEIRGERRAVVAEAVPD-AEHDELWQR 127
>gi|226304721|ref|YP_002764679.1| hypothetical protein RER_12320 [Rhodococcus erythropolis PR4]
gi|226183836|dbj|BAH31940.1| hypothetical protein RER_12320 [Rhodococcus erythropolis PR4]
Length=114
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (42%), Positives = 28/41 (69%), Gaps = 1/41 (2%)
Query 21 VNPILRSLLHTPLAGPLRTQLM-VVSFTGRKTGRHFSIPLS 60
VN +++ L+ P+ G L + M V+++ GRK+GR FS P+S
Sbjct 11 VNVVVQPLIGAPIVGKLLGRSMTVITYVGRKSGRTFSAPVS 51
>gi|158288470|ref|XP_310337.6| AGAP003786-PA [Anopheles gambiae str. PEST]
gi|157019097|gb|EAA45202.4| AGAP003786-PA [Anopheles gambiae str. PEST]
Length=665
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/52 (39%), Positives = 27/52 (52%), Gaps = 0/52 (0%)
Query 78 HNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAAQAYGVKRGQRMLG 129
N D A Y G T M ELIR+R+ + +FL+AAQ G+K + G
Sbjct 184 ENVRDPNIAGRPYHGTTGPMTVELIRNRSALQPMFLQAAQELGMKLADEVNG 235
>gi|262201953|ref|YP_003273161.1| hypothetical protein Gbro_2015 [Gordonia bronchialis DSM 43247]
gi|262085300|gb|ACY21268.1| hypothetical protein Gbro_2015 [Gordonia bronchialis DSM 43247]
Length=168
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/135 (26%), Positives = 56/135 (42%), Gaps = 18/135 (13%)
Query 7 AVDIAHPPAALLRLVNPILRSLLHTP-----LAGPLRTQLMVVSFTGRKTGRHFSIPLSA 61
A + P + +R + P+ R +LH+ + GP+ M+++ TGR++G+ + PL
Sbjct 23 AFACSGPGSWAIRTLAPLDRRILHSSGGRYTMLGPIGAPTMLLTTTGRRSGQPRTSPLLY 82
Query 62 HVIDNDLYALT-------EAGWKHNFSDGAAAQVVYDGKTTAMRGELI----RDRAVVSE 110
H D DL+ + W N V G A + RDR V
Sbjct 83 HREDPDLHVVGSNFGQEHHPAWTWNLLAHPECSVNTAGIEVAATATPVVGAERDR--VYA 140
Query 111 LFLRAAQAYGVKRGQ 125
F R + Y V RG+
Sbjct 141 EFERLVRVYSVYRGR 155
>gi|325003018|ref|ZP_08124130.1| hypothetical protein PseP1_29825 [Pseudonocardia sp. P1]
Length=151
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/119 (31%), Positives = 53/119 (45%), Gaps = 20/119 (16%)
Query 19 RLVNPILRSLLH--TPLAGPLRTQLMVVSFTGRKTGRHFSIPLSAHVIDNDLYALTEAG- 75
RL+NP++ +L P+ G +V++ GR TGR ++PL+ ID Y ++ G
Sbjct 15 RLLNPVVAALAERGAPVGG-----AVVLAVPGRVTGRVRTVPLTPVTIDGRRYLISPRGE 69
Query 76 --WKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVS--ELFLRAAQAY--GVKRGQRML 128
W N + G GE R RAV E + QAY G+ RG +L
Sbjct 70 TDWVRNLRAAGGIGALRTG------GEPERVRAVEQGVEAAVPVLQAYVRGLGRGAGLL 122
>gi|86739712|ref|YP_480112.1| 3-hydroxyacyl-CoA dehydrogenase [Frankia sp. CcI3]
gi|86566574|gb|ABD10383.1| 3-hydroxyacyl-CoA dehydrogenase [Frankia sp. CcI3]
Length=592
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/78 (35%), Positives = 35/78 (45%), Gaps = 15/78 (19%)
Query 3 DQSYAVDIAHP--PAALLRLVN-----PILRSLLHTP-----LAGPLRTQLMVVSFTGRK 50
D + HP P ALL L+ IL S+ HT PL QL+ GRK
Sbjct 219 DAAMRFGCGHPMGPLALLDLIGLDSAYEILDSIYHTSRDHLHAPAPLLKQLVTAGMLGRK 278
Query 51 TGRHF---SIPLSAHVID 65
TGR F + P S+ ++D
Sbjct 279 TGRGFYTYAAPYSSEIVD 296
>gi|308501805|ref|XP_003113087.1| hypothetical protein CRE_25283 [Caenorhabditis remanei]
gi|308265388|gb|EFP09341.1| hypothetical protein CRE_25283 [Caenorhabditis remanei]
Length=647
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query 57 IPLSAHVIDNDLYALTEAGWKHNFSDGAAAQVVYDGKTTAMRGELIRDRAVVSELFLRAA 116
+PL+ ++ D D LT+ +K F A V + G+ R IRD A
Sbjct 1 MPLNKYIQDGDNQDLTDERFKATFDTDALGAVFHGGEDALKRVREIRDELTKRGHLFDAL 60
Query 117 QAYGVKRGQRMLGLSFRDRRI-PTLEEFAEAVDRLKLVAI 155
A R +RM +S + + + + EFA+ + L ++AI
Sbjct 61 PAAHRTRAERMEDVSRKLKNLMENVSEFADFSNNLDMLAI 100
Lambda K H
0.323 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129924364284
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40