BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0586

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607726|ref|NP_215100.1|  GntR family transcriptional regulat...   479    1e-133
gi|340625616|ref|YP_004744068.1|  putative transcriptional regula...   476    1e-132
gi|342858890|ref|ZP_08715544.1|  GntR family transcriptional regu...   331    7e-89 
gi|41410179|ref|NP_963015.1|  hypothetical protein MAP4081 [Mycob...   311    5e-83 
gi|254776986|ref|ZP_05218502.1|  hypothetical protein MaviaA2_202...   309    3e-82 
gi|120403925|ref|YP_953754.1|  regulatory protein GntR [Mycobacte...   305    5e-81 
gi|108799693|ref|YP_639890.1|  GntR family transcriptional regula...   299    2e-79 
gi|333990677|ref|YP_004523291.1|  GntR family transcriptional reg...   293    1e-77 
gi|118470474|ref|YP_887830.1|  HTH-type transcriptional regulator...   288    4e-76 
gi|126435337|ref|YP_001071028.1|  GntR family transcriptional reg...   283    1e-74 
gi|254823431|ref|ZP_05228432.1|  regulatory protein GntR, HTH [My...   274    8e-72 
gi|54022127|ref|YP_116369.1|  putative transcriptional regulator ...   245    3e-63 
gi|119714283|ref|YP_921248.1|  GntR family transcriptional regula...   243    2e-62 
gi|226303639|ref|YP_002763597.1|  GntR family transcriptional reg...   222    4e-56 
gi|229492823|ref|ZP_04386621.1|  putative HTH-type transcriptiona...   221    6e-56 
gi|111018059|ref|YP_701031.1|  GntR family transcriptional regula...   217    2e-54 
gi|226360187|ref|YP_002777965.1|  GntR family transcriptional reg...   215    5e-54 
gi|325676804|ref|ZP_08156477.1|  GntR family transcriptional regu...   212    4e-53 
gi|312139745|ref|YP_004007081.1|  GntR family transcriptional reg...   211    8e-53 
gi|262204306|ref|YP_003275514.1|  GntR family transcriptional reg...   200    2e-49 
gi|333919273|ref|YP_004492854.1|  putative GntR family transcript...   179    3e-43 
gi|343924426|ref|ZP_08763975.1|  putative GntR family transcripti...   178    7e-43 
gi|169630101|ref|YP_001703750.1|  GntR family transcriptional reg...   174    9e-42 
gi|149917131|ref|ZP_01905631.1|  regulatory protein GntR, HTH [Pl...   152    3e-35 
gi|218780566|ref|YP_002431884.1|  GntR family transcriptional reg...   129    3e-28 
gi|149925555|ref|ZP_01913819.1|  regulatory protein GntR, HTH [Li...   127    2e-27 
gi|256396558|ref|YP_003118122.1|  GntR family transcriptional reg...   120    2e-25 
gi|54023596|ref|YP_117838.1|  putative transcriptional regulator ...   109    3e-22 
gi|83591125|ref|YP_431134.1|  GntR family transcriptional regulat...  95.1    8e-18 
gi|218781019|ref|YP_002432337.1|  GntR family transcriptional reg...  94.0    2e-17 
gi|253699950|ref|YP_003021139.1|  GntR family transcriptional reg...  90.5    2e-16 
gi|197119276|ref|YP_002139703.1|  GntR family transcriptional reg...  90.1    2e-16 
gi|326201507|ref|ZP_08191378.1|  GntR domain protein [Clostridium...  87.8    1e-15 
gi|39996726|ref|NP_952677.1|  GntR family transcriptional regulat...  87.8    1e-15 
gi|29899145|gb|AAP03112.1|  putative transcriptional regulator [S...  87.4    2e-15 
gi|262199917|ref|YP_003271126.1|  regulatory protein GntR HTH [Ha...  85.5    5e-15 
gi|322420290|ref|YP_004199513.1|  regulatory protein GntR HTH [Ge...  85.1    8e-15 
gi|229827258|ref|ZP_04453327.1|  hypothetical protein GCWU000182_...  85.1    8e-15 
gi|183980844|ref|YP_001849135.1|  GntR family transcriptional reg...  84.7    1e-14 
gi|240171897|ref|ZP_04750556.1|  putative transcriptional regulat...  84.3    1e-14 
gi|147678567|ref|YP_001212782.1|  transcriptional regulator [Pelo...  84.3    1e-14 
gi|118619656|ref|YP_907988.1|  GntR family transcriptional regula...  84.3    1e-14 
gi|284042660|ref|YP_003393000.1|  GntR family transcriptional reg...  84.3    1e-14 
gi|15839886|ref|NP_334923.1|  GntR family transcriptional regulat...  83.6    2e-14 
gi|254230842|ref|ZP_04924169.1|  hypothetical protein TBCG_00487 ...  83.2    3e-14 
gi|315505771|ref|YP_004084658.1|  regulatory protein GntR [Microm...  82.8    4e-14 
gi|284041748|ref|YP_003392088.1|  GntR family transcriptional reg...  82.4    6e-14 
gi|323700681|ref|ZP_08112593.1|  GntR domain protein [Desulfovibr...  82.0    6e-14 
gi|148264251|ref|YP_001230957.1|  GntR domain-containing protein ...  81.6    8e-14 
gi|340029683|ref|ZP_08665746.1|  GntR domain-containing protein [...  81.3    1e-13 


>gi|15607726|ref|NP_215100.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|15839988|ref|NP_335025.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|31791768|ref|NP_854261.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=240

 Score =  479 bits (1233),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA
Sbjct  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA
Sbjct  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP
Sbjct  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVSQASRQ  240
            TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVSQASRQ
Sbjct  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVSQASRQ  240


>gi|340625616|ref|YP_004744068.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340003806|emb|CCC42932.1| putative transcriptional regulatory protein (GNTR-family) [Mycobacterium 
canettii CIPT 140010059]
Length=240

 Score =  476 bits (1225),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 239/240 (99%), Positives = 239/240 (99%), Gaps = 0/240 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA
Sbjct  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA
Sbjct  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP
Sbjct  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVSQASRQ  240
            TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL SQASRQ
Sbjct  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLDSQASRQ  240


>gi|342858890|ref|ZP_08715544.1| GntR family transcriptional regulator [Mycobacterium colombiense 
CECT 3035]
 gi|342133131|gb|EGT86334.1| GntR family transcriptional regulator [Mycobacterium colombiense 
CECT 3035]
Length=240

 Score =  331 bits (848),  Expect = 7e-89, Method: Compositional matrix adjust.
 Identities = 169/240 (71%), Positives = 192/240 (80%), Gaps = 0/240 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPV RRSVPE VF+QIATDVL+GEM PG  LPSERRLAE+ GVSRPAVREALKRLSA
Sbjct  1    MALQPVIRRSVPEAVFDQIATDVLSGEMQPGSPLPSERRLAEVFGVSRPAVREALKRLSA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            A LVEVRQG VTTVRDFRRHAGLDLLP+LLFR GELD +V RSILE RLR  PKVAELAA
Sbjct  61   ASLVEVRQGGVTTVRDFRRHAGLDLLPQLLFRQGELDAAVFRSILETRLRIGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            E++ PELA LLQDSLR L+  + P+ W R TL FWDH+VDS+GSIV RLMYN FRAAYE 
Sbjct  121  EQHGPELAALLQDSLRRLEASQSPVEWHRDTLAFWDHMVDSSGSIVFRLMYNPFRAAYER  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVSQASRQ  240
             L AL T M     R   YR+LA+AIC+GD   A +AA+D+LELAN +++A L  Q +R+
Sbjct  181  ALTALATAMNDEVNRADGYRELAEAICAGDAAEAGRAARDVLELANATMIAALHRQETRR  240


>gi|41410179|ref|NP_963015.1| hypothetical protein MAP4081 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399013|gb|AAS06631.1| hypothetical protein MAP_4081 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336460599|gb|EGO39492.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=236

 Score =  311 bits (797),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 158/233 (68%), Positives = 182/233 (79%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPV RRSVPE VF+QIATDVL+GE+P G ALPSERRLAE+ GVSRPAVREALKRLSA
Sbjct  1    MALQPVIRRSVPEAVFDQIATDVLSGELPAGSALPSERRLAEVFGVSRPAVREALKRLSA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            A LVEVRQG VTTVRDFRRHAGLDLLP+L+FR+GELD  V RSILE RLR  PKVAELAA
Sbjct  61   ASLVEVRQGGVTTVRDFRRHAGLDLLPQLVFRDGELDAGVFRSILETRLRIGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            E++ PELA LL DSLR L+     + W R TL+FWDH+VDS+GSIV RLMYN FRAAYE 
Sbjct  121  EQHGPELAALLDDSLRRLEASRSAVEWHRGTLEFWDHMVDSSGSIVFRLMYNPFRAAYER  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             +  L   + A   R   YR LA AIC+GD   A + A+++LELAN +++  L
Sbjct  181  AVGVLAAAIPAEINRTDAYRALAQAICAGDADEAGRGAREVLELANATMIGAL  233


>gi|254776986|ref|ZP_05218502.1| hypothetical protein MaviaA2_20276 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=236

 Score =  309 bits (791),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 157/233 (68%), Positives = 181/233 (78%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPV RRSVPE VF+QIATDVL+GE+P G ALPSERRLAE+ GVSRPAVREALKRLSA
Sbjct  1    MALQPVIRRSVPEAVFDQIATDVLSGELPAGSALPSERRLAEVFGVSRPAVREALKRLSA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            A LVEVR G VTTVRDFRRHAGLDLLP+L+FR+GELD  V RSILE RLR  PKVAELAA
Sbjct  61   ASLVEVRHGGVTTVRDFRRHAGLDLLPQLVFRDGELDAGVFRSILETRLRIGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            E++ PELA LL DSLR L+     + W R +L+FWDH+VDS+GSIV RLMYN FRAAYE 
Sbjct  121  EQHGPELAVLLDDSLRRLEASHSAVEWHRGSLEFWDHMVDSSGSIVFRLMYNPFRAAYER  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             L  L   + A   R   YR LA AIC+GD   A + A+++LELAN +++  L
Sbjct  181  ALGVLAAAIPAEINRTDAYRALAQAICAGDADEAGRGAREVLELANATMIGAL  233


>gi|120403925|ref|YP_953754.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1]
 gi|119956743|gb|ABM13748.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii 
PYR-1]
Length=240

 Score =  305 bits (780),  Expect = 5e-81, Method: Compositional matrix adjust.
 Identities = 154/233 (67%), Positives = 182/233 (79%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MAL+PV RRSVPE+VF+QI +DVL+GEM PGE LPSERRLAE+LGVSRPA+REALKRL+A
Sbjct  1    MALRPVNRRSVPEDVFDQIISDVLSGEMRPGETLPSERRLAEVLGVSRPAIREALKRLAA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGL+EVRQGD TTVRDFRR AGLDLLPRLL R+G+LD++VVRSILE RL N PKVAELAA
Sbjct  61   AGLIEVRQGDATTVRDFRRTAGLDLLPRLLIRDGDLDLAVVRSILETRLHNGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            +R  PEL++ L  ++RAL  E DP+  QRH LDFWDH+VD A SI  RLM+N  RA YEP
Sbjct  121  QRRGPELSDELNTAMRALADEADPVAAQRHALDFWDHIVDGADSIAFRLMFNTLRATYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             L AL T M A   R   YR +A+A+ +GDP  A+  A  LLE A T+L+  L
Sbjct  181  ALPALATMMAAEVGRVDAYRAVAEAVLAGDPAAARDNAHRLLEPATTALLDAL  233


>gi|108799693|ref|YP_639890.1| GntR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868803|ref|YP_938755.1| GntR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108770112|gb|ABG08834.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS]
 gi|119694892|gb|ABL91965.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS]
Length=239

 Score =  299 bits (766),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 154/233 (67%), Positives = 177/233 (76%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPV RRSVPE+VF+QI T+VL+G+M PG+ LPSERRLAE+LGVSRPA+REALKRL+ 
Sbjct  1    MALQPVNRRSVPEDVFDQIVTEVLSGQMQPGQTLPSERRLAEVLGVSRPAIREALKRLAG  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGL+EVRQGD TTVRDFRR AGLDLLPRLL R GELD++VVRSILE RL N PKVAELAA
Sbjct  61   AGLIEVRQGDATTVRDFRRTAGLDLLPRLLIRGGELDLTVVRSILETRLHNGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            ER  P LAE L +++ AL+ E DP+  Q+  L FWDHVVD A SI  RLMYN  RA YEP
Sbjct  121  ERGGPGLAERLDETVDALEAETDPVAAQQLALTFWDHVVDGADSIAFRLMYNTLRATYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             L AL T M     RP  YR +  AI + DP GA  AA+ LLE A T+L+  L
Sbjct  181  ALPALATMMAEEVGRPDAYRAVTAAIVARDPAGAADAARRLLEPATTALLDAL  233


>gi|333990677|ref|YP_004523291.1| GntR family transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333486645|gb|AEF36037.1| GntR family transcriptional regulator [Mycobacterium sp. JDM601]
Length=240

 Score =  293 bits (750),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 149/233 (64%), Positives = 177/233 (76%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MAL+ VTRRSVPE VFEQI ++VL+GEM PGE LP+ERRLAE+LGVSRPAVREAL RL+A
Sbjct  1    MALRQVTRRSVPEHVFEQIMSEVLSGEMAPGEVLPNERRLAEVLGVSRPAVREALTRLNA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGL+EVR GD TTVRD+RRHAGLDLLPRLL R  ELD+ VVRSILEARL N PKVAELAA
Sbjct  61   AGLIEVRHGDATTVRDYRRHAGLDLLPRLLVRGEELDLEVVRSILEARLHNGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            +R+ P+ A +L  ++ AL  E DP+  QR  L FWDHVVD+A SIV RLM+N  R  YEP
Sbjct  121  QRSGPQAAAVLNGAVDALVAEADPVQRQRAALTFWDHVVDAADSIVFRLMFNTLRVTYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             L AL T M      P  Y+++A AI +GDP GA++AA +LL  A  +L+  L
Sbjct  181  ALEALATVMAVEVSHPQPYQRVAQAIAAGDPAGARRAAVELLAPATDALLTAL  233


>gi|118470474|ref|YP_887830.1| HTH-type transcriptional regulator [Mycobacterium smegmatis str. 
MC2 155]
 gi|118171761|gb|ABK72657.1| putative HTH-type transcriptional regulator [Mycobacterium smegmatis 
str. MC2 155]
Length=243

 Score =  288 bits (738),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 155/233 (67%), Positives = 172/233 (74%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPV RRSVPE+VFEQI ++VLTGEM PGE+LPSERRLAE+LGVSRPAVREA+KRL+A
Sbjct  4    MALQPVNRRSVPEDVFEQIVSEVLTGEMRPGESLPSERRLAEVLGVSRPAVREAIKRLTA  63

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLVEVRQGD TTVRDFRRHAG+DLLPRLLFR GELD SVVRSILE RL N PKVAELAA
Sbjct  64   AGLVEVRQGDATTVRDFRRHAGMDLLPRLLFRAGELDTSVVRSILETRLHNGPKVAELAA  123

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            ER   EL   L   + AL+ E DPI  QRH + FWDHVVD A SI  RLM+N  R  YEP
Sbjct  124  ERRGAELVGQLTAVVHALEAEIDPIQRQRHAMTFWDHVVDGADSIAFRLMFNTLRETYEP  183

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             L AL   M      P  YR +  AI   D   A+ AAQ+LLE A  +L+  L
Sbjct  184  VLPALAAVMAGEVADPDAYRAITRAISDRDADAARGAAQNLLEPATHALLGAL  236


>gi|126435337|ref|YP_001071028.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126235137|gb|ABN98537.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
Length=239

 Score =  283 bits (724),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 153/233 (66%), Positives = 175/233 (76%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPV RRSVPE+VF+QI T+VL+G+M PG+ LPSERRLAE+LGVSRPA+REALKRL+ 
Sbjct  1    MALQPVNRRSVPEDVFDQIVTEVLSGQMQPGQTLPSERRLAEVLGVSRPAIREALKRLAG  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGL+EVRQGD TTVRDFRR AGLDLLPRLL R GELD++VVRSILE RL N PKVAELAA
Sbjct  61   AGLIEVRQGDATTVRDFRRTAGLDLLPRLLMRGGELDLTVVRSILETRLHNGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            ER  P LA  L +++ AL TE DP+  Q+  L FWDHVVD A SI  RLMYN  RA YEP
Sbjct  121  ERGGPSLAGRLDETVDALLTETDPVAAQQLALTFWDHVVDGADSIAFRLMYNTLRATYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             L AL   M     RP  YR +  AI + DP GA  AA+ LLE A T+L+  L
Sbjct  181  ALPALAAMMAEEVGRPDAYRAVTAAIVARDPAGAADAARRLLEPATTALLDAL  233


>gi|254823431|ref|ZP_05228432.1| regulatory protein GntR, HTH [Mycobacterium intracellulare ATCC 
13950]
Length=285

 Score =  274 bits (701),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 155/234 (67%), Positives = 181/234 (78%), Gaps = 4/234 (1%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MAL+PVTR+S+P+ VFEQI +DVL+GE+ PGE LPSERRLAE+LGVSRP VREALKRL+A
Sbjct  1    MALRPVTRQSIPDHVFEQIMSDVLSGELAPGELLPSERRLAEVLGVSRPVVREALKRLTA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLF----RNGELDISVVRSILEARLRNFPKVA  116
            AGLVEVRQGD TTVRD++RHAGLDLLPRLL     R  ELD++VVRSILE RL N PKVA
Sbjct  61   AGLVEVRQGDATTVRDYKRHAGLDLLPRLLLRGGDRGDELDVAVVRSILETRLHNGPKVA  120

Query  117  ELAAERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRA  176
            ELAAER  P+ A +L+ ++ AL  EEDP   QR  L FWDHVVD+A SIV RLM+N  RA
Sbjct  121  ELAAERGGPQAASVLEAAVDALVAEEDPTERQRAALTFWDHVVDAADSIVFRLMFNTLRA  180

Query  177  AYEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLM  230
             YEP L AL T M A   RP  YR++A AI +GDP GAK+AA +LLE A   L+
Sbjct  181  TYEPALPALDTVMAAEVNRPELYRQVAQAITAGDPVGAKRAATELLEPATRGLL  234


>gi|54022127|ref|YP_116369.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54013635|dbj|BAD55005.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=270

 Score =  245 bits (626),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 142/229 (63%), Positives = 164/229 (72%), Gaps = 2/229 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQPV +RSV  +VFEQIA +VL+GE  PG ALPSER+LAE LGVSRPAVREAL+RL+A
Sbjct  1    MALQPVVKRSVSADVFEQIAAEVLSGERAPGSALPSERQLAEALGVSRPAVREALQRLAA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLV VRQGD TTV D+RR AGL++LPRLL R G LD +V RSILEARL N PKVAELAA
Sbjct  61   AGLVAVRQGDTTTVLDYRRGAGLEILPRLLIRQGTLDPTVARSILEARLHNGPKVAELAA  120

Query  121  ER--NEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAY  178
             R  +   L   L   L AL  E +P+  QRH L FWDH+VD+A SIV RLM N  RAAY
Sbjct  121  ARAGDREALRHELNRCLDALARETEPVALQRHALAFWDHLVDAADSIVFRLMNNMLRAAY  180

Query  179  EPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANT  227
            EP L AL   MTA     + YR +A+A+ + DP  A  AA+ LLE A T
Sbjct  181  EPALEALAPLMTAEVGNVAGYRAIAEAVLAADPPAATAAARALLEPATT  229


>gi|119714283|ref|YP_921248.1| GntR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119534944|gb|ABL79561.1| transcriptional regulator, GntR family [Nocardioides sp. JS614]
Length=249

 Score =  243 bits (619),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 138/240 (58%), Positives = 168/240 (70%), Gaps = 0/240 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M LQPV RRSVP+EVF+Q+ ++V+ G +  GEALPSERRLAE+LGVSRPAVREAL+R++ 
Sbjct  7    MPLQPVNRRSVPDEVFDQVLSEVVDGGIGAGEALPSERRLAEVLGVSRPAVREALQRMAQ  66

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
              L++VR G  TTVRDFRR+ GLDLLPRLL R GELD +V RSILEARL   P VA LAA
Sbjct  67   TRLLDVRHGGATTVRDFRRYGGLDLLPRLLVRRGELDPAVARSILEARLVVGPGVAALAA  126

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            ER  P L  +L +++ AL+  ED I  QRH L FWD VVD+A S+V RLM+N+ RAAYEP
Sbjct  127  ERGGPALEPVLAETVAALEGTEDGIERQRHALAFWDLVVDAADSMVFRLMFNSLRAAYEP  186

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVSQASRQ  240
             L AL   M     +   YR L  AI +GDP  A+ AA  +L  A TSL+  L +  S Q
Sbjct  187  ALEALAALMAEEVGQVGAYRLLTAAIGAGDPETARAAADRVLRPATTSLLTALAALDSDQ  246


>gi|226303639|ref|YP_002763597.1| GntR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
 gi|226182754|dbj|BAH30858.1| putative GntR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
Length=240

 Score =  222 bits (565),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 120/227 (53%), Positives = 152/227 (67%), Gaps = 0/227 (0%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
             QPV R S    VF+QI+  VL GE+  GEALPSER+LAE  GVSRPAVREA+++L+ AG
Sbjct  2    FQPVARTSASGAVFDQISVKVLAGELAAGEALPSERKLAEAFGVSRPAVREAIQKLAQAG  61

Query  63   LVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAER  122
            LVEVRQG+ T+VRDFRR AG +LLP+LL R+G  D++VVRS+LE R    P++A LAA R
Sbjct  62   LVEVRQGESTSVRDFRRQAGPELLPQLLVRDGVPDLTVVRSVLETRELMGPQIAVLAARR  121

Query  123  NEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPTL  182
               E A  L  ++  L   EDP+  Q   L FWD VVDSA SI  RL++N+ RAAYEP +
Sbjct  122  ISAESARELDTAVDQLGATEDPVELQDRALAFWDVVVDSADSIAFRLIFNSLRAAYEPAM  181

Query  183  AALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSL  229
             AL + M A   +   YRKLA AI S D + A+ +A  LL    T++
Sbjct  182  TALASVMVAEVGQTDLYRKLASAITSHDESTAEASAAQLLHTGTTAI  228


>gi|229492823|ref|ZP_04386621.1| putative HTH-type transcriptional regulator [Rhodococcus erythropolis 
SK121]
 gi|229320263|gb|EEN86086.1| putative HTH-type transcriptional regulator [Rhodococcus erythropolis 
SK121]
Length=240

 Score =  221 bits (564),  Expect = 6e-56, Method: Compositional matrix adjust.
 Identities = 121/227 (54%), Positives = 151/227 (67%), Gaps = 0/227 (0%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
             QPV R S    VF+QI+  VL GE+  GEALPSER+LAE  GVSRPAVREA+++L+ AG
Sbjct  2    FQPVARTSASGAVFDQISVKVLAGELAAGEALPSERKLAEAFGVSRPAVREAIQKLAQAG  61

Query  63   LVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAER  122
            LVEVRQG+ T+VRDFRR AG +LLP+LL R+G  D+SVVRS+LE R    P++A LAA R
Sbjct  62   LVEVRQGESTSVRDFRRQAGPELLPQLLVRDGVPDLSVVRSVLETRELMGPQIAVLAARR  121

Query  123  NEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPTL  182
               E A  L  ++  L   EDP+  Q   L FWD VVDSA SI  RL++N+ RAAYEP +
Sbjct  122  ISAESARELDTTVDQLGATEDPVELQDRALAFWDVVVDSADSIAFRLIFNSLRAAYEPAM  181

Query  183  AALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSL  229
             AL + M A   +   YRKLA AI S D   A+ +A  LL    T++
Sbjct  182  TALASVMVAEVGQTDLYRKLASAITSHDEPTAETSAAQLLHTGTTAI  228


>gi|111018059|ref|YP_701031.1| GntR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817589|gb|ABG92873.1| transcriptional regulator, GntR family protein [Rhodococcus jostii 
RHA1]
Length=247

 Score =  217 bits (552),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 113/233 (49%), Positives = 155/233 (67%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M  +P+ R+S   EVF+QI   VL G++  G+ALPSERRLAE  GVSRPA+REA+++L+ 
Sbjct  3    MMFEPIARKSASTEVFDQITARVLGGDLAAGDALPSERRLAEAFGVSRPAIREAIQKLAQ  62

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLVEVRQGD T+VRDFR+H G +LL +LL R+G  D +VVRS+LEAR     +VA LAA
Sbjct  63   AGLVEVRQGDATSVRDFRQHGGPELLSQLLVRDGVPDWAVVRSVLEARRMIGVQVARLAA  122

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
             R   E    L+D++  L ++ DP+  Q   L FW+ VVD+A SI  RL++N+ R AYEP
Sbjct  123  GRATDESGAALRDAVDHLASDSDPVAQQVGALAFWERVVDTADSIAFRLIFNSLRNAYEP  182

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
            T+ A+   M A   R   Y +LA+AI + D   A + A  LL+L   ++ +V+
Sbjct  183  TMTAMAAVMVAEVGRTDLYHQLAEAISAHDEVAAAQTATTLLDLGTAAVTSVI  235


>gi|226360187|ref|YP_002777965.1| GntR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226238672|dbj|BAH49020.1| putative GntR family transcriptional regulator [Rhodococcus opacus 
B4]
Length=245

 Score =  215 bits (547),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 115/233 (50%), Positives = 154/233 (67%), Gaps = 0/233 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M  +P+ R+S   EVF+QI   VL G++  GEALPSERRLAE  GVSRPAVREA+++L+ 
Sbjct  1    MMFEPIARKSASTEVFDQITARVLGGDLAAGEALPSERRLAEAFGVSRPAVREAIQKLAQ  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLVEVRQGD T+VRDFR+H G +LL +LL R G  D +VVRS+LEAR     +VA LAA
Sbjct  61   AGLVEVRQGDATSVRDFRQHGGPELLSQLLIRGGVPDWAVVRSVLEARRMIGVQVARLAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            +R   +    L+++   L +E DP+  Q   L FW+ VVD+A SI  RL++N+ R AYEP
Sbjct  121  DRATEKSGTALREAADHLASETDPVAQQVGALAFWERVVDTADSIAFRLIFNSLRNAYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
            T+ A+   M A   R   Y +LA+AI + D   A + A  LL+L   ++ AV+
Sbjct  181  TMTAMAAVMVAEVGRADLYHQLAEAISAHDEDLAAQTAATLLDLGTAAVTAVI  233


>gi|325676804|ref|ZP_08156477.1| GntR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
 gi|325552352|gb|EGD22041.1| GntR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
Length=244

 Score =  212 bits (540),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 128/235 (55%), Positives = 155/235 (66%), Gaps = 0/235 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M L PV RRS+P++VF+Q+   V+ G + PGE L SERR+AE LGVSRPAVREAL R++A
Sbjct  1    MDLTPVQRRSIPDDVFDQLLGRVVDGRVAPGETLLSERRMAEALGVSRPAVREALGRIAA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
             GLV+VRQG  T V D RR  GLDLLPRLL R GE+D +V  SILEARL N PKVAELAA
Sbjct  61   MGLVDVRQGGATVVNDLRRRGGLDLLPRLLVRGGEIDPAVAHSILEARLWNGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            +R     A++L  ++ AL  ++D +  QR  LDFWD VVD A SI  RLM+N  R+AYEP
Sbjct  121  QRAPEGTADVLDSAVDALAADDDSVARQRIALDFWDLVVDGADSITFRLMFNTLRSAYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVS  235
             + AL   M A       YR + DAI   D   A  AA  LLE A T L + LV+
Sbjct  181  MIDALAMVMAAEVNESDRYRAITDAIRRRDRPAAFAAAHALLEPATTLLGSALVA  235


>gi|312139745|ref|YP_004007081.1| GntR family transcriptional regulator [Rhodococcus equi 103S]
 gi|311889084|emb|CBH48397.1| putative GntR family transcriptional regulator [Rhodococcus equi 
103S]
Length=244

 Score =  211 bits (537),  Expect = 8e-53, Method: Compositional matrix adjust.
 Identities = 129/235 (55%), Positives = 154/235 (66%), Gaps = 0/235 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M L PV RRS+P++VF+Q+   V+ G + PGE L SERR+AE LGVSRPAVREAL R++A
Sbjct  1    MDLTPVQRRSIPDDVFDQLLGRVVDGRVAPGETLLSERRMAEALGVSRPAVREALGRIAA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
             GLV+VRQG  T V D RR  GLDLLPRLL R GE+D +V  SILEARL N PKVAELAA
Sbjct  61   MGLVDVRQGGATVVNDLRRRGGLDLLPRLLVRGGEIDPAVAHSILEARLWNGPKVAELAA  120

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
            +R     A++L  ++ AL   +DP+  QR  LDFWD VVD A SI  RLM+N  R AYEP
Sbjct  121  QRAPGGTADVLDSAVDALAAADDPVARQRIALDFWDLVVDGADSITFRLMFNTLRRAYEP  180

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVS  235
             + AL   M A       YR + DAI   D   A  AA  LLE A T L + LV+
Sbjct  181  MIDALAMVMAAEVNESDRYRAITDAIRRRDREAAFAAAHALLEPATTLLGSALVA  235


>gi|262204306|ref|YP_003275514.1| GntR family transcriptional regulator [Gordonia bronchialis DSM 
43247]
 gi|262087653|gb|ACY23621.1| regulatory protein GntR HTH [Gordonia bronchialis DSM 43247]
Length=252

 Score =  200 bits (508),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 118/230 (52%), Positives = 143/230 (63%), Gaps = 0/230 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M  +PV  RSVP +V+EQI T VL+GE+  G  LPSER LA +LGVSRPAVREAL R++A
Sbjct  7    MPFEPVAPRSVPTDVYEQIVTGVLSGELAVGATLPSERELARILGVSRPAVREALGRVAA  66

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLV +RQG  T V D     GLDLLPRLL R+GELD  V RS++EAR    P+VAELAA
Sbjct  67   AGLVSIRQGGSTKVLDPAVAGGLDLLPRLLVRDGELDPRVARSVVEARALVGPEVAELAA  126

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
             R   ++   L   L  L  E D I  Q   L+FW  V+D+A SI  RLMYN+ RAAYEP
Sbjct  127  RRAAADVVPALSAILDELAAEPDSIAQQVIALEFWSRVIDAADSIAFRLMYNSLRAAYEP  186

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLM  230
             L  L   +         YR + DAI + DP  A  AA+ LL  A  +L+
Sbjct  187  ALPVLAAVLEPEIANIGGYRAVVDAIAARDPARAGTAARALLTPATDALL  236


>gi|333919273|ref|YP_004492854.1| putative GntR family transcriptional regulator [Amycolicicoccus 
subflavus DQS3-9A1]
 gi|333481494|gb|AEF40054.1| Putative GntR family transcriptional regulator [Amycolicicoccus 
subflavus DQS3-9A1]
Length=240

 Score =  179 bits (455),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 112/234 (48%), Positives = 147/234 (63%), Gaps = 1/234 (0%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
             + + R S    VF+QI+  VL+GE+ PG+ LPSERRLAE  GVSRPA+REA+++LS AG
Sbjct  2    FEAIARTSTSAAVFDQISARVLSGELAPGDDLPSERRLAEAFGVSRPAIREAIQKLSQAG  61

Query  63   LVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAER  122
            LVEVRQGD T+VRD+R HAG +LLP+LL   GE D++V  S++EAR     KVAELAA+R
Sbjct  62   LVEVRQGDATSVRDYRAHAGPELLPQLLLPQGEPDVAVALSVVEARQIVGVKVAELAAQR  121

Query  123  NEPELAELLQDSLRALDT-EEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPT  181
               + A  L ++  A+++   D I  Q   L FWD VVDSA SI  RL++N+ R+AYEP 
Sbjct  122  VTADQAARLHNAAAAMESPNADTIDLQFRALGFWDAVVDSADSIAFRLIFNSLRSAYEPM  181

Query  182  LAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVLVS  235
            +  L   M A       Y  LA AI + D       A+ LL     +L +VL S
Sbjct  182  ITVLAPVMEAEVSNADAYHNLATAIAANDHQLTSTRAEALLSAGTLALSSVLNS  235


>gi|343924426|ref|ZP_08763975.1| putative GntR family transcriptional regulator [Gordonia alkanivorans 
NBRC 16433]
 gi|343765570|dbj|GAA10901.1| putative GntR family transcriptional regulator [Gordonia alkanivorans 
NBRC 16433]
Length=259

 Score =  178 bits (451),  Expect = 7e-43, Method: Compositional matrix adjust.
 Identities = 118/232 (51%), Positives = 146/232 (63%), Gaps = 0/232 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M  +PVT++S PE VF+QI   VL+G++  GEALPSER LA +LGVSRP VREALKR++A
Sbjct  7    MPFEPVTQQSAPEIVFDQIVEGVLSGDLAAGEALPSERELARMLGVSRPTVREALKRVAA  66

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            AGLV +RQGD   ++D  R  GLDLLPRLL R G L   V RSI+EAR    P+VA LAA
Sbjct  67   AGLVTIRQGDGARIQDIARTGGLDLLPRLLLRGGALVPGVARSIIEARAAVGPEVARLAA  126

Query  121  ERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEP  180
             R        ++  L  L  E DPI  Q   L+FW  VVD+  SI  RLMYN+ RAAYEP
Sbjct  127  RRATDNDLVAIRAVLDHLAAESDPIGQQVAALEFWSAVVDAGDSIAFRLMYNSLRAAYEP  186

Query  181  TLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAV  232
             + AL   +         YR L D I + +P  A+ AA+ LLE A  +L+AV
Sbjct  187  AVPALAGVLEPEVGNIEGYRALVDTIAAHEPERAEVAARALLEPATATLLAV  238


>gi|169630101|ref|YP_001703750.1| GntR family transcriptional regulator [Mycobacterium abscessus 
ATCC 19977]
 gi|169242068|emb|CAM63096.1| Putative transcriptional regulator, GntR family [Mycobacterium 
abscessus]
Length=242

 Score =  174 bits (441),  Expect = 9e-42, Method: Compositional matrix adjust.
 Identities = 96/204 (48%), Positives = 131/204 (65%), Gaps = 6/204 (2%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            MALQP+ R+S+P+E+F Q+A  VLTG+  PG+ LPSER LAE LGVSR AVREAL RL  
Sbjct  1    MALQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLER  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            +GL+++RQG  T +RD+R  AG D+LP LL   G++D   + S++EAR    P+VA LAA
Sbjct  61   SGLIQIRQGGSTVIRDYRSDAGFDVLPLLLAYGGDVDRRTLASVIEARAIIGPQVARLAA  120

Query  121  ER--NEPELAELLQDSLRALDTEEDPI--VWQRHTLDFWDHVVDSAGSIVDRLMYNAFRA  176
            +R    P +A+ L+     L+ E+DP+  +WQ   L FW+ V+D+A SI  RL++N  R 
Sbjct  121  QRAHQTPGVADRLRAMTSELEAEDDPLQRMWQ--ALGFWELVIDTADSIAFRLVFNTMRD  178

Query  177  AYEPTLAALTTTMTAAAKRPSDYR  200
            +Y   L  L   M A       YR
Sbjct  179  SYVRALDVLVNVMAAEVGDIGHYR  202


>gi|149917131|ref|ZP_01905631.1| regulatory protein GntR, HTH [Plesiocystis pacifica SIR-1]
 gi|149822047|gb|EDM81440.1| regulatory protein GntR, HTH [Plesiocystis pacifica SIR-1]
Length=267

 Score =  152 bits (385),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 101/249 (41%), Positives = 135/249 (55%), Gaps = 16/249 (6%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            + L+PV R S+ + VFEQ+   +LT  + PG+ LPSER LA  L V+R A+REALKRLS 
Sbjct  7    LELEPVPRSSLSDGVFEQLCASILTHRLTPGDTLPSERELATTLQVNRGAIREALKRLSQ  66

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFR-NGELDISVVRSILEARLRNFPKVAELA  119
            AGLVE R G  T VRD+RR A L LLPRLLF  +GE ++ V RSI+E R    P +A L 
Sbjct  67   AGLVEQRHGGGTFVRDYRRSADLSLLPRLLFSPDGEANLPVARSIMEMRAALAPDIARLC  126

Query  120  AERNEPELAELLQDSL----RALDT-EEDPIV----------WQRHTLDFWDHVVDSAGS  164
            AER  PEL   + + +    RA +    DP +           Q  +L+ WD +V  A +
Sbjct  127  AERRSPELLASIDEHVAQLARAFEALPADPSLAAPAARELEPLQLLSLELWDRIVQGADN  186

Query  165  IVDRLMYNAFRAAYEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLEL  224
            I  RL +N  R  YE    AL   +         Y +L DAI   D   A +AA  +++L
Sbjct  187  IAYRLAFNTLRQTYEQIRDALLLPLAKELCAIDRYIELLDAIRHQDGFAAHRAATAIVQL  246

Query  225  ANTSLMAVL  233
             +  + A  
Sbjct  247  GSGGMNAAF  255


>gi|218780566|ref|YP_002431884.1| GntR family transcriptional regulator [Desulfatibacillum alkenivorans 
AK-01]
 gi|218761950|gb|ACL04416.1| regulatory protein GntR HTH [Desulfatibacillum alkenivorans AK-01]
Length=238

 Score =  129 bits (324),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 80/235 (35%), Positives = 120/235 (52%), Gaps = 8/235 (3%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M ++PV ++S+  +VF QI   +L  +  PG+ LPSER L +L+ ++R +VREALKRL  
Sbjct  1    MQIKPVEKQSLSNQVFNQIRDFILNEQYRPGDKLPSERELCDLMQINRSSVREALKRLEQ  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            A L+E+R G+ + V DF+ H G DL+  ++     L+   +RS+ E R     ++A LAA
Sbjct  61   ARLIEIRHGEGSVVLDFKYHGGFDLIRHMVEPGKPLNYLAIRSLCEVRSLVCTEIARLAA  120

Query  121  ER-NEPELAELL----QDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFR  175
             R  EPEL EL     Q  +   D E D   +Q    +F   +  ++ ++   LM N+ R
Sbjct  121  LRIKEPELEELAGIVGQMKICVQDGEGD---FQSLDFEFHYTLAKASENVAFLLMLNSIR  177

Query  176  AAYEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLM  230
              Y P   A +   T  A  P  Y  +  A+  GD   A      L+E  N   M
Sbjct  178  EVYLPMAQAFSAMFTHVAGDPGVYEDIYQAVKGGDSQEAGNLTHQLIEEGNRIFM  232


>gi|149925555|ref|ZP_01913819.1| regulatory protein GntR, HTH [Limnobacter sp. MED105]
 gi|149825672|gb|EDM84880.1| regulatory protein GntR, HTH [Limnobacter sp. MED105]
Length=235

 Score =  127 bits (318),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 80/232 (35%), Positives = 124/232 (54%), Gaps = 1/232 (0%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
            ++ + + S+ E+V+ Q+   +L   +P G  LPSER L+E LGV+R AVREA+KRL  A 
Sbjct  1    MENIQKISISEQVYTQLRDRILKKVLPVGAELPSERELSETLGVNRGAVREAIKRLQQAR  60

Query  63   LVEVRQGDVTTVRDFRRHAGLDLLPRLLFR-NGELDISVVRSILEARLRNFPKVAELAAE  121
            LV VR G  T V +F    GL+LLP L+    G++++ V R I+  R    P VA  AA+
Sbjct  61   LVRVRHGGATQVENFEAEGGLELLPGLMVNTQGQINLEVARGIVALRKALAPVVAGQAAQ  120

Query  122  RNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPT  181
                 LA+ L+  +  + T  +    Q+   DFW  VV  +G++V +L +N+    Y   
Sbjct  121  HGGKTLADTLKPVIAEMQTTSELPRLQQLAFDFWALVVQGSGNVVFKLAFNSMNQTYLAA  180

Query  182  LAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
               LT  M    +  +   +LA AI +G+    +  A+  +EL + +L A L
Sbjct  181  WHTLTLVMQDEFRDVNTLAQLAQAIEAGEQRRCEVLARQHVELGSRALNAAL  232


>gi|256396558|ref|YP_003118122.1| GntR family transcriptional regulator [Catenulispora acidiphila 
DSM 44928]
 gi|256362784|gb|ACU76281.1| regulatory protein GntR HTH [Catenulispora acidiphila DSM 44928]
Length=237

 Score =  120 bits (301),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 97/232 (42%), Positives = 119/232 (52%), Gaps = 12/232 (5%)

Query  5    PVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLV  64
            PV R SV   VFEQI   +L G + PG ALPSER L   LGV+R  VREAL+RL   GLV
Sbjct  12   PVVRSSVAAAVFEQILGRILDGSLDPGSALPSERALTLELGVTRQVVREALQRLDQLGLV  71

Query  65   EVRQGDVTTVRDFRRHAGLDLLPRLLFR-NGELDISVVRSILEARLRNFPKVAELAAERN  123
            E+R G  T V D+R  AGLDLLPRL  R +G LD  VVRS++E R       A  A    
Sbjct  72   EIRHGGGTRVLDYRDAAGLDLLPRLFRRADGSLDAEVVRSVMEMRQ------AVGADAAA  125

Query  124  EPELAELLQDSLRALDTEEDPIVWQRHTLD--FWDHVVDSAGSIVDRLMYNAFRAAYEPT  181
               L       LR    E      + H L+  FWD +VD + +I  RL  NA R AY P 
Sbjct  126  LCALRLADTAGLRRAVAEG---AGRGHDLESVFWDLIVDGSQNICYRLSLNALRQAYAPA  182

Query  182  LAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
             A +   +         Y  +  AI + DP  A+ AA +LL L   ++ A L
Sbjct  183  AALVADVLADEITAVRRYEDVIAAIEARDPERARAAAGELLGLGTAAITAFL  234


>gi|54023596|ref|YP_117838.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54015104|dbj|BAD56474.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=241

 Score =  109 bits (273),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 86/230 (38%), Positives = 116/230 (51%), Gaps = 13/230 (5%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M    V R +V + VF Q+   +LTG + P E LP+ER LAE   V+R AVREALKR+  
Sbjct  1    MEFAVVGRTAVSDAVFGQLVDAILTGRIAPDEPLPAERELAETFQVNRHAVREALKRVQQ  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDIS-VVRSILEARLRNFPKVAELA  119
            +GLV V QG  T V D+R + GLDLL   L R+G +    ++R I E R       A L 
Sbjct  61   SGLVRVAQGGKTRVLDWRANGGLDLLS-ALARSGSVPAQRILRDIAEMRRSVAADSARLC  119

Query  120  AERNEPELAELLQDSLRAL---DTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRA  176
            AER EP   + +  +  A        D ++     L FW  V+D +G++  RL  N   A
Sbjct  120  AERAEPRRVDTIVAAAAAYPEPTAALDDLI--SGDLAFWTAVIDGSGNLAYRLALNTLVA  177

Query  177  AYEPTLAALTTTMTAAAKRP----SDYRKLADAICSGDPTGAKKAAQDLL  222
             Y  T     T +     R     + +R+LAD I + DP GA + A  LL
Sbjct  178  GY--TDIGWETIVRLGLNREYLDRARHRELADRIAARDPEGAHRHAHALL  225


>gi|83591125|ref|YP_431134.1| GntR family transcriptional regulator [Moorella thermoacetica 
ATCC 39073]
 gi|83574039|gb|ABC20591.1| transcriptional regulator, GntR family [Moorella thermoacetica 
ATCC 39073]
Length=233

 Score = 95.1 bits (235),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 73/222 (33%), Positives = 121/222 (55%), Gaps = 9/222 (4%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M L+P+  + + EE+ +QI   +  G + PG+ LPSER L+E L VSR +VREAL  L+A
Sbjct  1    MDLRPIRTKKIYEEIVQQIKDLIGEGNLKPGDRLPSERELSERLAVSRASVREALSALAA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
             G++ +R G+ T V++ R  A ++ L   L     LD      +LEAR     + A LAA
Sbjct  61   MGVIVIRPGEGTFVQNIRNGAIVEPLAMALL----LDRQAAMELLEARQALEGEAAYLAA  116

Query  121  ERNEPELAELLQDSLRALDTE-EDPIVWQRHTLDFWDHVVDSA-GSIVDRLMY---NAFR  175
             R  PE  E +++ L+ ++ + +  I+ +   L F   + ++A  S++ RLM+   +  R
Sbjct  117  RRAGPEDLEKMEELLKEMEHDLQRGILGEEADLRFHLAIAEAARNSVLARLMHTVSDTMR  176

Query  176  AAYEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKA  217
             A + +   L TT     K  + + ++ +AI + DP  A+KA
Sbjct  177  QALKTSRQRLYTTAGNPEKLFAQHNQIYEAIKAHDPRAARKA  218


>gi|218781019|ref|YP_002432337.1| GntR family transcriptional regulator [Desulfatibacillum alkenivorans 
AK-01]
 gi|218762403|gb|ACL04869.1| regulatory protein GntR HTH [Desulfatibacillum alkenivorans AK-01]
Length=235

 Score = 94.0 bits (232),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 69/214 (33%), Positives = 105/214 (50%), Gaps = 8/214 (3%)

Query  17   EQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLVEVRQGDVTTVRD  76
             QI T +L G+ PPG  LP ER LA+ LGV+RP +RE L RL+A G + +R G  T V D
Sbjct  15   NQILTAILEGKYPPGACLPGERALAQELGVTRPTLRETLHRLAAEGWIAIRHGKPTIVND  74

Query  77   FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAERNEPELAELLQDSLR  136
            +    GL LL  +      L  + +  +LE RL   P VA +A+ERN  +LA  L  + +
Sbjct  75   YWTKGGLGLLSTMARYGQFLPKNFIVHLLELRLVLIPSVAAMASERNPEDLARHLALA-K  133

Query  137  ALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPTLAALTTTMTAAAKRP  196
             LD  +DP  + ++     + +  ++ +    ++ N F   ++       +     A   
Sbjct  134  ILD--DDPEAFAQYDWSLQELMAKASKNFTFPMILNDFGPLFKSLAHTYFSLAKGRAASK  191

Query  197  SDYRKLADAICSGDPTGAKKAA----QDLLELAN  226
              Y  LA A+  G P   K+AA    QD + + N
Sbjct  192  KYYSSLARALELG-PEAVKQAARAAMQDSIAIWN  224


>gi|253699950|ref|YP_003021139.1| GntR family transcriptional regulator [Geobacter sp. M21]
 gi|251774800|gb|ACT17381.1| regulatory protein GntR HTH [Geobacter sp. M21]
Length=240

 Score = 90.5 bits (223),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 117/250 (47%), Gaps = 33/250 (13%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M   P+  + V  ++ EQI + +L+GE  PGE LP ER LAEL GVSRP+VREAL  L++
Sbjct  1    MKFTPIKPKKVSTQIAEQIRSSILSGEFNPGEKLPPERELAELFGVSRPSVREALNILTS  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGE--LDISVVRSILEARLRNFPKVAEL  118
            +GLVE  QG  T VR    ++    L  L+  +G+  LD+  VR  +E+        A  
Sbjct  61   SGLVETYQGGGTLVRSLVENSAGMPLSELIRIDGDRALDVIEVRKGMES------WTAWY  114

Query  119  AAERNEPELAELLQ-------DSLRALDTEED-----PIVWQRHTLD-FWDHVVDSAGSI  165
            AA R  PE    LQ        +L  L   ED      ++  R T +  W H++ S    
Sbjct  115  AASRALPEDVRRLQVVVDGMAKNLEQLKASEDFDAHFHMLVARATHNVVWSHMMQSIFEA  174

Query  166  VDRLMYNAFRAAYEPTLAALTTTMTAAAKR--PSDYRKLADAICSGDPTGAKKAAQDLLE  223
            +     + +RA Y          +T   +R   S + K+ + I   D  GA+ A  + L+
Sbjct  175  MQEFQRDVWRAVY----------LTEEDQRLLFSHHLKIYEMIRDRDADGARGAMLEHLD  224

Query  224  LANTSLMAVL  233
             A     A +
Sbjct  225  FAQKRCSAYV  234


>gi|197119276|ref|YP_002139703.1| GntR family transcriptional regulator [Geobacter bemidjiensis 
Bem]
 gi|197088636|gb|ACH39907.1| transcriptional regulator, GntR family [Geobacter bemidjiensis 
Bem]
Length=240

 Score = 90.1 bits (222),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 81/250 (33%), Positives = 116/250 (47%), Gaps = 33/250 (13%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M   P+  + V  ++ EQI + +L GE  PGE LP ER LAEL GVSRP+VREAL  L++
Sbjct  1    MKFTPIKPKKVSTQIAEQIRSSILAGEFNPGEKLPPERELAELFGVSRPSVREALNILTS  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGE--LDISVVRSILEARLRNFPKVAEL  118
            +GLVE  QG  T VR    ++    L  L+  +G+  LD+  VR  +E+        A  
Sbjct  61   SGLVETYQGGGTLVRSLVENSAGMPLSELIRIDGDRALDVIEVRKGMES------WTAWY  114

Query  119  AAERNEPELAELLQ-------DSLRALDTEED-----PIVWQRHTLD-FWDHVVDSAGSI  165
            AA R  PE    LQ        +L  L   ED      ++  R T +  W H++ S    
Sbjct  115  AATRALPEDVRRLQVVVDGMAKNLEQLKASEDFDAHFHMLVARATHNVVWGHMMQSIFEA  174

Query  166  VDRLMYNAFRAAYEPTLAALTTTMTAAAKR--PSDYRKLADAICSGDPTGAKKAAQDLLE  223
            +     + +RA Y          MT   +R   S + K+ + I   D  GA+ A  + L+
Sbjct  175  MQEFQRDVWRAVY----------MTEEDQRLLFSHHLKIYEMIRDRDADGARVAMLEHLD  224

Query  224  LANTSLMAVL  233
             A     A +
Sbjct  225  FAQKRCSAYV  234


>gi|326201507|ref|ZP_08191378.1| GntR domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325988107|gb|EGD48932.1| GntR domain protein [Clostridium papyrosolvens DSM 2782]
Length=229

 Score = 87.8 bits (216),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 72/232 (32%), Positives = 118/232 (51%), Gaps = 13/232 (5%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M ++ VTR+SV E+VFEQ+   +L  E   GE +PSE  L+ LLGVSR  VR AL++L +
Sbjct  1    MPIKKVTRQSVSEQVFEQLKEQILNNEWQKGEKIPSENELSALLGVSRVTVRNALQKLIS  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLD-LLPRLLFRNGELDISVVRSILEARLRNFPKVAELA  119
             GL+E R G+ + + D      ++ L+P    +   L     + ILE R      VAELA
Sbjct  61   LGLIETRFGEGSFITDALPGISMNSLIPIAYLKENSL-----QEILEYRRVMEGNVAELA  115

Query  120  AERNEPELAELLQDSLRALDTEEDPI-VWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAY  178
             ++  PE    L+++  A+D  +D +  + +  L+F  H++  A +  + L+   F    
Sbjct  116  TKKASPEDVAKLEEAYLAMDKVKDDLEQFSKADLNF--HLL-LANTTKNSLIIQTFYIFS  172

Query  179  EPTLAALTTTMTAAAKRPSDY--RKLADAICSGDPTGAKKAAQDLLE-LANT  227
            +    A +  +T        Y  + L +A+  G+   AK+   + +E L NT
Sbjct  173  DVLNRAFSQIVTKRGNSAGIYYHKLLLEAVKDGNSLEAKRIMDEHMEDLYNT  224


>gi|39996726|ref|NP_952677.1| GntR family transcriptional regulator [Geobacter sulfurreducens 
PCA]
 gi|39983607|gb|AAR35000.1| transcriptional regulator, GntR family [Geobacter sulfurreducens 
PCA]
 gi|298505737|gb|ADI84460.1| transcriptional regulator, GntR family [Geobacter sulfurreducens 
KN400]
Length=241

 Score = 87.8 bits (216),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 66/193 (35%), Positives = 95/193 (50%), Gaps = 21/193 (10%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M  +P+  + +  ++ EQI + +L GE  PGE LP ER LAE+ GVSRP+VREAL  L+A
Sbjct  1    MNFKPIKPKKISTQIAEQIRSSILAGEFTPGEKLPPERELAEMFGVSRPSVREALNILAA  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGE--LDISVVRSILEARLRNFPKVAEL  118
            AGLVE  QG  T V+     A    L  ++    E  LD+  VR  +EA        A  
Sbjct  61   AGLVESYQGGGTIVKSLMDAASGPPLSEIIKVEQERALDVIEVRKCMEAW------TAYY  114

Query  119  AAERNEPE-------LAELLQDSLRALDTEED-----PIVWQRHTLD-FWDHVVDSAGSI  165
            AA+R  P+       +   ++ +L  L   ED      IV  R T +  W H++ +    
Sbjct  115  AAQRALPDDVRKLEGIVWNMEANLNGLKPSEDLDANFHIVIARSTHNVVWLHLMQTIFEA  174

Query  166  VDRLMYNAFRAAY  178
            +     + +RA Y
Sbjct  175  MKEFQRSVWRAVY  187


>gi|29899145|gb|AAP03112.1| putative transcriptional regulator [Streptomyces griseochromogenes]
Length=239

 Score = 87.4 bits (215),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 68/221 (31%), Positives = 105/221 (48%), Gaps = 4/221 (1%)

Query  2    ALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAA  61
             ++ + R ++ + +  ++  D+LTG  P G  LP ER LA+  GV+R  ++ A  RL  A
Sbjct  11   GVEALPRETIVDVLESRLREDILTGRHPAGSYLPPERTLADGYGVTRTTLKHAFGRLMQA  70

Query  62   GLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAE  121
            GL+E R G  T VRD+ R  G DLLP L+  + +     +  + E R      +AE AA 
Sbjct  71   GLLETRHGVGTRVRDYLRLGGADLLPMLVRHSPDW----IGEVFEVRHSIGALIAERAAA  126

Query  122  RNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPT  181
            R        L+  L A+    D    Q   ++    +  + G+ V  L+ N    AY P 
Sbjct  127  RGTARQRAELRTLLAAVADAGDTDAVQLADIEVHRALARATGNRVYVLLTNTLFNAYLPV  186

Query  182  LAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLL  222
             AAL    T A         + +A+ +GD  GA++AA+  L
Sbjct  187  RAALQGPFTDAHVAHGRLAPVVEAVAAGDAPGARRAAEQYL  227


>gi|262199917|ref|YP_003271126.1| regulatory protein GntR HTH [Haliangium ochraceum DSM 14365]
 gi|262083264|gb|ACY19233.1| regulatory protein GntR HTH [Haliangium ochraceum DSM 14365]
Length=261

 Score = 85.5 bits (210),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 79/252 (32%), Positives = 119/252 (48%), Gaps = 38/252 (15%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
            L+PV ++ V EE+ EQ+   +LTG   PG  LP ER L++ LGV+R ++REALK+L   G
Sbjct  2    LRPVEKQRVAEEIVEQLRELILTGRYEPGAKLPPERELSKRLGVNRASLREALKKLEHLG  61

Query  63   LVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKV-------  115
            LV +RQGD T V++F    G++L+  LL         ++R  LE R R F +        
Sbjct  62   LVRIRQGDGTRVQNFMETGGIELVSYLLPLAPTSHPDLIRDTLEFR-RIFGREVARLAAQ  120

Query  116  ---------AELAAERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIV  166
                       +AAER E +++   +  L  +D E            F+  +    G+ V
Sbjct  121  RARAEDIARVRVAAERAEGDVS---KSELFDIDFE------------FYVALTACTGNQV  165

Query  167  DRLMYNAFRAA---YEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLE  223
              L+ N  R A   Y P L  LTT   A     + +R L  AI + D   A   A + L 
Sbjct  166  MGLLINTVRDAVRSYTPVLTQLTTPAEAVR---AHHRALLAAIEAHDVERAAHIADEYLG  222

Query  224  LANTSLMAVLVS  235
                 +++++ S
Sbjct  223  RGAERVLSLMAS  234


>gi|322420290|ref|YP_004199513.1| regulatory protein GntR HTH [Geobacter sp. M18]
 gi|320126677|gb|ADW14237.1| regulatory protein GntR HTH [Geobacter sp. M18]
Length=240

 Score = 85.1 bits (209),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 74/253 (30%), Positives = 117/253 (47%), Gaps = 29/253 (11%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M   P+  + V  ++ EQI + +L GE  PGE LP ER LA++ GVSRP+VREAL  L++
Sbjct  1    MKFTPIKPKKVSTQIAEQIRSSILAGEFNPGEKLPPERELADMFGVSRPSVREALNILTS  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
            +GLVE  QG  T VR    +A    L  L+  +G+  + V+    E R+      A  AA
Sbjct  61   SGLVETYQGGGTLVRSLVENAAGMPLTELIRIDGDRALDVI----EVRMGMESWTAWYAA  116

Query  121  ERNEPE-------LAELLQDSLRALDTEED-----PIVWQRHTLD-FWDHVVDSAGSIVD  167
             R  PE       + + +  +L  L   ED      ++  R T +  W H++ S    + 
Sbjct  117  TRALPEDIRRLEAVVDGMAKNLEELKHSEDLDAHFHMLVARATHNVVWSHMMQSIFEAMQ  176

Query  168  RLMYNAFRAAYEPTLAALTTTMTAAAKR--PSDYRKLADAICSGDPTGAKKAAQDLLELA  225
                + +RA Y          +T   +R   + + K+ + I   +  GA+ A  + L+ A
Sbjct  177  EFQRDVWRAVY----------LTEEDQRLLYNHHLKVYEMIRDRNADGARDAMLEHLDFA  226

Query  226  NTSLMAVLVSQAS  238
                 A +  + S
Sbjct  227  QKRCSAYVTMRGS  239


>gi|229827258|ref|ZP_04453327.1| hypothetical protein GCWU000182_02644 [Abiotrophia defectiva 
ATCC 49176]
 gi|229788876|gb|EEP24990.1| hypothetical protein GCWU000182_02644 [Abiotrophia defectiva 
ATCC 49176]
Length=239

 Score = 85.1 bits (209),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 63/224 (29%), Positives = 112/224 (50%), Gaps = 11/224 (4%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M L  + + SV  +VFEQ+   +L     PG  LPSE  L+ +LGVSR ++R AL+RL+ 
Sbjct  1    MGLHTIKKESVANQVFEQLKGQILNQSWLPGNKLPSETELSSILGVSRVSIRNALQRLNT  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEAR----LRNFPKVA  116
             GL+E R GD + V++   + G D +   L  N  L    V+ +L+ R    +      A
Sbjct  61   LGLIETRLGDGSYVKE--ANIG-DQIKAALIPNIYLQAHSVKEVLQFRSVIEVETAALAA  117

Query  117  ELAAERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRA  176
              A+ +N  ++  + Q   + L+ ++  + + ++ LDF   + +S  + +   MY   R 
Sbjct  118  RNASAQNIQKMKSIFQ---KQLNHDKQDVAFAKYDLDFHFAIAESTENSLIIAMYEILRD  174

Query  177  AYEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQD  220
                T+    +++      P  +R+L +AI +GD   A +A ++
Sbjct  175  ILTKTMLRTVSSIGTEIALPY-HRRLIEAIEAGDELLAAQAMKE  217


>gi|183980844|ref|YP_001849135.1| GntR family transcriptional regulator [Mycobacterium marinum 
M]
 gi|183174170|gb|ACC39280.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium 
marinum M]
Length=245

 Score = 84.7 bits (208),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 72/220 (33%), Positives = 105/220 (48%), Gaps = 3/220 (1%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
            LQP  R+ V E++   IA  +L G  PPG ALP ER LAE LGV+R ++R+ L RL   G
Sbjct  7    LQPPDRQRVDEQIATSIADAILDGVFPPGSALPPERELAEQLGVNRTSLRQGLARLQQMG  66

Query  63   LVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAER  122
            L+E RQG    VRD +      ++  L+ + G      +  +LE R    P +  LAAER
Sbjct  67   LIETRQGSGNVVRDPQSLTHPAVVEALVRKLGP---DFLVEVLEIRAALGPLIGRLAAER  123

Query  123  NEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPTL  182
            N  E AE L+ +L  +   +     Q   L ++  ++    +    L+Y     A+    
Sbjct  124  NSSEDAEALRAALAEVADADTAPARQAADLAYFRVLIHGTRNRALGLLYRWVEQAFGGRE  183

Query  183  AALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLL  222
              LT     A    +D   + DA+ +GDP  A  A +  L
Sbjct  184  HELTGAYEDADPVIADLTAINDAVLAGDPETAAAAVEGYL  223


>gi|240171897|ref|ZP_04750556.1| putative transcriptional regulatory protein [Mycobacterium kansasii 
ATCC 12478]
Length=244

 Score = 84.3 bits (207),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 71/224 (32%), Positives = 103/224 (46%), Gaps = 9/224 (4%)

Query  2    ALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAA  61
            A QP  R  V E++   IA  +L G  PPG  LP ER LA   GV+R ++R+ L RL   
Sbjct  10   AFQPPDRLRVDEQIAASIADAILDGVFPPGSTLPPERDLAAQFGVNRTSLRQGLARLQQM  69

Query  62   GLVEVRQGDVTTVRD---FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAEL  118
            GL+EVR G  + VRD       A ++ L R      +L    +  +LE R    P +  L
Sbjct  70   GLIEVRHGSGSVVRDPEGLTHPAVVEALVR------KLGPDFLAELLEIRAALGPLIGRL  123

Query  119  AAERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAY  178
            AA+R+ P+ A  L+D+L AL   +     Q   L ++  ++ S  +    L+Y     A+
Sbjct  124  AAQRHTPDDAHALRDALAALRDADGAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAF  183

Query  179  EPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLL  222
                  LT     A    +D R +  A+   DP  A  A +  L
Sbjct  184  GGREHELTGAYNDAEPVLADLRAITKAVLECDPVAAGAAVEAYL  227


>gi|147678567|ref|YP_001212782.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146274664|dbj|BAF60413.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
Length=234

 Score = 84.3 bits (207),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 54/142 (39%), Positives = 80/142 (57%), Gaps = 4/142 (2%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M LQP+  + + E + EQI   +++G + PG+ LPSE+ LAE+L VSR +VREAL  L  
Sbjct  1    MELQPIKTKRIYETIVEQIKNLIVSGNLKPGDKLPSEKELAEILQVSRTSVREALCALDM  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAA  120
             G++EVR G    VR F  H  L+ L   L     L    +R I+E R     + A LAA
Sbjct  61   VGILEVRPGGGAFVRQFNPHDILESLSFALI----LQKEKIRDIMEVRRGLEIEAAGLAA  116

Query  121  ERNEPELAELLQDSLRALDTEE  142
            ER   E    ++++LR ++ ++
Sbjct  117  ERATEENLAKMEEALRQMEADQ  138


>gi|118619656|ref|YP_907988.1| GntR family transcriptional regulator [Mycobacterium ulcerans 
Agy99]
 gi|118571766|gb|ABL06517.1| transcriptional regulatory protein (probably GntR-family) [Mycobacterium 
ulcerans Agy99]
Length=245

 Score = 84.3 bits (207),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 72/220 (33%), Positives = 105/220 (48%), Gaps = 3/220 (1%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
            LQP  R+ V E++   IA  +L G  PPG ALP ER LAE LGV+R ++R+ L RL   G
Sbjct  7    LQPPDRQRVDEQIATSIADAILDGVFPPGSALPPERELAEQLGVNRTSLRQGLARLQQMG  66

Query  63   LVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAER  122
            L+E RQG    VRD +      ++  L+ + G      +  +LE R    P +  LAAER
Sbjct  67   LIETRQGSGNVVRDPQSLTHPAVVEALVRKLGP---DFLVEVLEIRAALGPLIGRLAAER  123

Query  123  NEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPTL  182
            N  E AE L+ +L  +   +     Q   L ++  ++    +    L+Y     A+    
Sbjct  124  NSSEDAEALRAALAEVADADTAPARQAADLAYFRVLIHGTRNRALGLLYRWVEQAFGGRE  183

Query  183  AALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLL  222
              LT     A    +D   + DA+ +GDP  A  A +  L
Sbjct  184  HDLTGAYEDADPVIADLTAINDAVLAGDPETAAAAVEGYL  223


>gi|284042660|ref|YP_003393000.1| GntR family transcriptional regulator [Conexibacter woesei DSM 
14684]
 gi|283946881|gb|ADB49625.1| regulatory protein GntR HTH [Conexibacter woesei DSM 14684]
Length=228

 Score = 84.3 bits (207),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 78/221 (36%), Positives = 115/221 (53%), Gaps = 5/221 (2%)

Query  6    VTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLVE  65
            ++R SVP++VF Q+   +L+G   PGE +P++R LA  LGV+   VREAL RL    LVE
Sbjct  3    ISRTSVPDQVFAQLREAILSGSYAPGERIPTQRALAADLGVNMATVREALGRLEQLRLVE  62

Query  66   VRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELAAERNEP  125
             R G  T VRD+RR  GLD L   L   G     +  S+ EAR     + A LAA+R + 
Sbjct  63   TRHGSGTHVRDWRRSGGLDALT--LLGAGTAGAEIGASLFEARRLLLAEAARLAAQRRDE  120

Query  126  ELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPTLAAL  185
              A  L +   A+    D          F + +V++AG++V +L+ N+ R  Y P   A 
Sbjct  121  AHAAALGELAAAVAAAPDDATALLADWAFMEALVEAAGNVVFQLIMNSVRELYLPHADAF  180

Query  186  TTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLELAN  226
               ++A  +    Y  +A A+  GD    ++AA  + ELA+
Sbjct  181  AALVSARDELLPHYDAVAAAVREGD---GERAATAVAELAH  218


>gi|15839886|ref|NP_334923.1| GntR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|31791675|ref|NP_854168.1| GntR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 gi|57116742|ref|NP_215008.2| GntR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 49 more sequence titles
 Length=242

 Score = 83.6 bits (205),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 70/212 (34%), Positives = 100/212 (48%), Gaps = 9/212 (4%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
             QP  R+ V E +   IA  +L G  PPG  LP ER LAE LGV+R ++R+ L RL   G
Sbjct  11   FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  70

Query  63   LVEVRQGDVTTVRD---FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELA  119
            L+EVR G  + VRD       A ++ L R      +L    +  +LE R    P +  LA
Sbjct  71   LIEVRHGSGSVVRDPEGLTHPAVVEALVR------KLGPDFLVELLEIRAALGPLIGRLA  124

Query  120  AERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYE  179
            A R+ PE AE L  +L  +   +     Q   L ++  ++ S  +    L+Y     A+ 
Sbjct  125  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  184

Query  180  PTLAALTTTMTAAAKRPSDYRKLADAICSGDP  211
                ALT     A    +D R +  A+ +GDP
Sbjct  185  GREHALTGAYDDADPVLTDLRAINGAVLAGDP  216


>gi|254230842|ref|ZP_04924169.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C]
 gi|308231564|ref|ZP_07412931.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis 
SUMu001]
 gi|308369408|ref|ZP_07417681.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis 
SUMu002]
 26 more sequence titles
 Length=238

 Score = 83.2 bits (204),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 70/212 (34%), Positives = 100/212 (48%), Gaps = 9/212 (4%)

Query  3    LQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAG  62
             QP  R+ V E +   IA  +L G  PPG  LP ER LAE LGV+R ++R+ L RL   G
Sbjct  7    FQPPDRQRVDERIATTIADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMG  66

Query  63   LVEVRQGDVTTVRD---FRRHAGLDLLPRLLFRNGELDISVVRSILEARLRNFPKVAELA  119
            L+EVR G  + VRD       A ++ L R      +L    +  +LE R    P +  LA
Sbjct  67   LIEVRHGSGSVVRDPEGLTHPAVVEALVR------KLGPDFLVELLEIRAALGPLIGRLA  120

Query  120  AERNEPELAELLQDSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYE  179
            A R+ PE AE L  +L  +   +     Q   L ++  ++ S  +    L+Y     A+ 
Sbjct  121  AARSTPEDAEALCAALEVVQQADTAAARQAADLAYFRVLIHSTRNRALGLLYRWVEHAFG  180

Query  180  PTLAALTTTMTAAAKRPSDYRKLADAICSGDP  211
                ALT     A    +D R +  A+ +GDP
Sbjct  181  GREHALTGAYDDADPVLTDLRAINGAVLAGDP  212


>gi|315505771|ref|YP_004084658.1| regulatory protein GntR [Micromonospora sp. L5]
 gi|315412390|gb|ADU10507.1| regulatory protein GntR HTH [Micromonospora sp. L5]
Length=242

 Score = 82.8 bits (203),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 50/109 (46%), Positives = 63/109 (58%), Gaps = 1/109 (0%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M   P  R SV + VF ++   +++G   PGE LP ER LA    V+R AVREAL+RL  
Sbjct  1    MTFDPAPRVSVSDHVFGRLRDAIVSGRYAPGETLPGERELAGAFAVNRHAVREALRRLQQ  60

Query  61   AGLVEVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDI-SVVRSILEAR  108
             GLV V QG  T V D+R HAGLDL   L      L + ++VR +LE R
Sbjct  61   LGLVRVSQGGATRVLDWRVHAGLDLALSLARSTDVLPVETLVRDMLEMR  109


>gi|284041748|ref|YP_003392088.1| GntR family transcriptional regulator [Conexibacter woesei DSM 
14684]
 gi|283945969|gb|ADB48713.1| regulatory protein GntR HTH [Conexibacter woesei DSM 14684]
Length=229

 Score = 82.4 bits (202),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 50/101 (50%), Positives = 68/101 (68%), Gaps = 1/101 (0%)

Query  9    RSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLVEVRQ  68
            R V + V E++   +L G++  G A+PSER LA+ LGV+R AVREALKRL  AGLV++ Q
Sbjct  9    RRVSDVVHERLRQQILGGDLAVGAAVPSERVLADELGVNRHAVREALKRLEQAGLVQISQ  68

Query  69   GDVTTVRDFRRHAGLDLLPRLLFRNGELDI-SVVRSILEAR  108
            G  T VRD+R   GL++L  L+   GEL    +VR++LE R
Sbjct  69   GGPTRVRDWRESGGLEVLLDLVDHPGELPPEELVRAVLELR  109


>gi|323700681|ref|ZP_08112593.1| GntR domain protein [Desulfovibrio sp. ND132]
 gi|323460613|gb|EGB16478.1| GntR domain protein [Desulfovibrio desulfuricans ND132]
Length=237

 Score = 82.0 bits (201),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 72/232 (32%), Positives = 116/232 (50%), Gaps = 21/232 (9%)

Query  1    MALQPVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSA  60
            M  +PV+R+S+  E+  QI   +  G + PG+ LP+ERRLAE  GVSR  VRE +K LS 
Sbjct  1    MEARPVSRKSISGEIVSQIREMIDHGRLQPGDRLPAERRLAEQFGVSRTTVREGIKILSE  60

Query  61   AGLVEVRQGDVTTVR---DFRRHAGLDLLPRLLFRN-GELDISVVRSILEARLRNFPKVA  116
            +GL+  RQG  T V    D  R     L+  +L  N G  D+  VR +LE      P++A
Sbjct  61   SGLLTSRQGAGTFVSRPDDGNREGA--LIEAVLAGNYGLQDVFEVRKMLE------PEIA  112

Query  117  ELAAERNEPE----LAELLQDSLRAL-DTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMY  171
             LAA    P+    L  ++ +  +A+ D E    +  R    F   + +++G+ V R M 
Sbjct  113  ALAARNGSPDAKTRLEAIIMEQEQAIADGESGAGIDHR----FHQALAEASGNPVLREMV  168

Query  172  NAFRAAYEPTLAALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKAAQDLLE  223
             A    +  + A    +   A    + +R + +A+ +G    A++A ++ L+
Sbjct  169  TALHEGFSRSRAEEVQSPRRAKASLAAHRAIVEAVRNGHAMQAERAMREHLD  220


>gi|148264251|ref|YP_001230957.1| GntR domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146397751|gb|ABQ26384.1| transcriptional regulator, GntR family [Geobacter uraniireducens 
Rf4]
Length=239

 Score = 81.6 bits (200),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 68/180 (38%), Positives = 90/180 (50%), Gaps = 21/180 (11%)

Query  14   EVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLVEVRQGDVTT  73
            ++ EQI T +L+GE  PG+ LP ER LAEL GVSRP+VREAL  L+A+GLVE  QG  T 
Sbjct  14   QIAEQIRTSILSGEFNPGDKLPPERELAELFGVSRPSVREALNVLAASGLVEAFQGGGTV  73

Query  74   VRDFRRHAGLDLLPRLLFRNGE--LDISVVRSILEARLRNFPKVAELAAERNEPE----L  127
            V+          L  L+   GE  LD+  VR  +E+        A  AA+R  PE    L
Sbjct  74   VKSLVETPTGTPLSELIRGEGERALDVIEVRKGMES------WTAYYAAQRALPEDIVRL  127

Query  128  AELLQDSLRALD---TEED-----PIVWQRHTLD-FWDHVVDSAGSIVDRLMYNAFRAAY  178
              ++    R LD   + ED       V  R T +  W H++ S    +     N +RA Y
Sbjct  128  QAIVDAMARNLDGAKSSEDLDANFHTVIARATHNVVWLHMMQSIFDAMKEFQRNVWRAVY  187


>gi|340029683|ref|ZP_08665746.1| GntR domain-containing protein [Paracoccus sp. TRP]
Length=237

 Score = 81.3 bits (199),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 69/235 (30%), Positives = 115/235 (49%), Gaps = 23/235 (9%)

Query  5    PVTRRSVPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLV  64
            PV+R++  E VFE +   +LTG +P G  LPSE +LAE  GVSRP +REA++ L   GL 
Sbjct  13   PVSRKNAAETVFEDLRGAILTGRLPVGIRLPSEAKLAEHYGVSRPIIREAMRSLQTLGLT  72

Query  65   EVRQGDVTTVRDFRRHAGLDLLPRLLFRNGELDISVVRSILEAR-LRNFPKVAELAAERN  123
              R G  + V   R+      +P L + +        R ++EAR     P     A  R+
Sbjct  73   RSRSGSGSFVISDRQ------VPELAYGSYS-----ARELIEARPFIEIPAAGWAALRRS  121

Query  124  EPELAELLQ--DSLRALDTEEDPIVWQRHTLDFWDHVVDSAGSIVDRLMYNAFRAAYEPT  181
            E ++  LLQ  DS   ++ +ED + W R   DF   + ++A    +RL       + +  
Sbjct  122  EEDMKRLLQLCDS---MERQEDALKWVRLDSDFHCLIAEAAR---NRLFARIVTDSRDAL  175

Query  182  LAALTTTMTAAAKRPS---DYRKLADAICSGDPTGAKKAAQDLLELANTSLMAVL  233
            +         A +R +   ++R++A+AI +G  + A+ A +D L     ++  ++
Sbjct  176  MRQSELVNLMADRRITSNHEHRRIAEAIATGSESEAQTAMRDHLHEVEQAMTWII  230



Lambda     K      H
   0.318    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 332206503090




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40