BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0595c
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
gi|15839998|ref|NP_335035.1| hypothetical protein MT0625 [Mycoba... 259 7e-68
gi|15607735|ref|NP_215109.1| hypothetical protein Rv0595c [Mycob... 258 2e-67
gi|289756674|ref|ZP_06516052.1| conserved hypothetical protein [... 258 3e-67
gi|340625625|ref|YP_004744077.1| hypothetical protein MCAN_06011... 257 5e-67
gi|240169379|ref|ZP_04748038.1| hypothetical protein MkanA1_0870... 166 1e-39
gi|15607767|ref|NP_215141.1| hypothetical protein Rv0627 [Mycoba... 81.3 5e-14
gi|194320087|pdb|3DBO|B Chain B, Crystal Structure Of A Member O... 81.3 5e-14
gi|254820582|ref|ZP_05225583.1| hypothetical protein MintA_11676... 79.0 2e-13
gi|254774872|ref|ZP_05216388.1| hypothetical protein MaviaA2_093... 73.9 7e-12
gi|41408125|ref|NP_960961.1| hypothetical protein MAP2027c [Myco... 73.6 1e-11
gi|289749125|ref|ZP_06508503.1| conserved hypothetical protein [... 73.2 1e-11
gi|340625683|ref|YP_004744135.1| hypothetical protein MCAN_06641... 72.8 2e-11
gi|302036027|ref|YP_003796349.1| putative PilT-like protein [Can... 68.6 3e-10
gi|284046267|ref|YP_003396607.1| PilT protein domain protein [Co... 65.9 2e-09
gi|158312409|ref|YP_001504917.1| PilT domain-containing protein ... 65.9 2e-09
gi|269957981|ref|YP_003327770.1| PilT protein domain-containing ... 63.5 9e-09
gi|86742786|ref|YP_483186.1| PilT protein-like protein [Frankia ... 63.2 1e-08
gi|256828120|ref|YP_003156848.1| twitching motility protein PilT... 62.8 2e-08
gi|336179974|ref|YP_004585349.1| PilT protein domain-containing ... 62.0 3e-08
gi|344338644|ref|ZP_08769575.1| PilT protein domain protein [Thi... 60.8 6e-08
gi|256372766|ref|YP_003110590.1| hypothetical protein Afer_2016 ... 60.5 9e-08
gi|332671244|ref|YP_004454252.1| PilT protein domain-containing ... 56.6 1e-06
gi|94265566|ref|ZP_01289311.1| PilT protein-like [delta proteoba... 56.2 1e-06
gi|15607805|ref|NP_215179.1| hypothetical protein Rv0665 [Mycoba... 55.8 2e-06
gi|288917699|ref|ZP_06412062.1| PilT protein domain protein [Fra... 55.8 2e-06
gi|301060111|ref|ZP_07200978.1| toxin-antitoxin system, toxin co... 55.1 3e-06
gi|300780332|ref|ZP_07090188.1| possible nucleic acid-binding pr... 52.8 2e-05
gi|298530242|ref|ZP_07017644.1| PilT protein domain protein [Des... 52.4 2e-05
gi|145595623|ref|YP_001159920.1| PilT domain-containing protein ... 52.0 3e-05
gi|224369081|ref|YP_002603245.1| PIN domain protein (PilT N term... 51.6 4e-05
gi|171913870|ref|ZP_02929340.1| PilT protein domain protein [Ver... 51.2 4e-05
gi|158521823|ref|YP_001529693.1| PilT domain-containing protein ... 51.2 5e-05
gi|119717550|ref|YP_924515.1| PilT domain-containing protein [No... 50.4 9e-05
gi|91205836|ref|YP_538191.1| toxin of toxin-antitoxin (TA) syste... 50.1 1e-04
gi|148262123|ref|YP_001228829.1| PilT domain-containing protein ... 50.1 1e-04
gi|67458848|ref|YP_246472.1| toxin of toxin-antitoxin system Vap... 50.1 1e-04
gi|329912129|ref|ZP_08275687.1| PilT like protein [Oxalobacterac... 50.1 1e-04
gi|116619645|ref|YP_821801.1| PilT domain-containing protein [Ca... 49.7 1e-04
gi|94266187|ref|ZP_01289897.1| PilT protein-like [delta proteoba... 49.3 2e-04
gi|115526131|ref|YP_783042.1| PilT domain-containing protein [Rh... 49.3 2e-04
gi|309790890|ref|ZP_07685433.1| PilT protein domain protein [Osc... 48.9 2e-04
gi|258591576|emb|CBE67877.1| PilT protein-like [NC10 bacterium '... 48.5 3e-04
gi|301064233|ref|ZP_07204676.1| toxin-antitoxin system, toxin co... 47.8 5e-04
gi|148262790|ref|YP_001229496.1| PilT domain-containing protein ... 47.4 7e-04
gi|84497437|ref|ZP_00996259.1| hypothetical protein JNB_14623 [J... 47.4 8e-04
gi|56479529|ref|YP_161118.1| virulence associated protein VapC [... 47.0 9e-04
gi|240171945|ref|ZP_04750604.1| PilT protein-like [Mycobacterium... 47.0 0.001
gi|304415075|ref|ZP_07395814.1| PIN domain-containing addiction ... 45.8 0.002
gi|15892302|ref|NP_360016.1| hypothetical protein RC0379 [Ricket... 45.8 0.002
gi|326799253|ref|YP_004317072.1| twitching mobility protein PilT... 45.8 0.002
>gi|15839998|ref|NP_335035.1| hypothetical protein MT0625 [Mycobacterium tuberculosis CDC1551]
gi|167969018|ref|ZP_02551295.1| hypothetical protein MtubH3_13717 [Mycobacterium tuberculosis
H37Ra]
gi|254230934|ref|ZP_04924261.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
27 more sequence titles
Length=131
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 60
VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct 2 VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 61
Query 61 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 120
YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA
Sbjct 62 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 121
Query 121 AMPDVEVITI 130
AMPDVEVITI
Sbjct 122 AMPDVEVITI 131
>gi|15607735|ref|NP_215109.1| hypothetical protein Rv0595c [Mycobacterium tuberculosis H37Rv]
gi|31791777|ref|NP_854270.1| hypothetical protein Mb0611c [Mycobacterium bovis AF2122/97]
gi|121636513|ref|YP_976736.1| hypothetical protein BCG_0641c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
47 more sequence titles
Length=130
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 60
+NVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct 1 MNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 60
Query 61 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 120
YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA
Sbjct 61 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 120
Query 121 AMPDVEVITI 130
AMPDVEVITI
Sbjct 121 AMPDVEVITI 130
>gi|289756674|ref|ZP_06516052.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289712238|gb|EFD76250.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=130
Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 128/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 60
+NVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct 1 MNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 60
Query 61 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 120
YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA
Sbjct 61 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 120
Query 121 AMPDVEVITI 130
AMPD+EVITI
Sbjct 121 AMPDIEVITI 130
>gi|340625625|ref|YP_004744077.1| hypothetical protein MCAN_06011 [Mycobacterium canettii CIPT
140010059]
gi|340003815|emb|CCC42941.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=130
Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 128/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 60
+NVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct 1 MNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST 60
Query 61 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 120
YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAI+TQDNDYA
Sbjct 61 YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAIVTQDNDYA 120
Query 121 AMPDVEVITI 130
AMPDVEVITI
Sbjct 121 AMPDVEVITI 130
>gi|240169379|ref|ZP_04748038.1| hypothetical protein MkanA1_08703 [Mycobacterium kansasii ATCC
12478]
Length=126
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/106 (80%), Positives = 92/106 (87%), Gaps = 0/106 (0%)
Query 25 RFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLV 84
R G + G+ +TLGELRLGVLQA GPEAAARRLSTYQLAQRFEPL +DE VSEAWALLV
Sbjct 21 RQRGSDAGLPKLTLGELRLGVLQAPGPEAAARRLSTYQLAQRFEPLSVDERVSEAWALLV 80
Query 85 SKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI 130
SKLRAA LR PINDSWIAATAVAH I I+TQD DY+A+PDVEVIT+
Sbjct 81 SKLRAAHLREPINDSWIAATAVAHQIPIVTQDGDYSAVPDVEVITL 126
>gi|15607767|ref|NP_215141.1| hypothetical protein Rv0627 [Mycobacterium tuberculosis H37Rv]
gi|31791809|ref|NP_854302.1| hypothetical protein Mb0643 [Mycobacterium bovis AF2122/97]
gi|121636546|ref|YP_976769.1| hypothetical protein BCG_0673 [Mycobacterium bovis BCG str. Pasteur
1173P2]
74 more sequence titles
Length=135
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)
Query 9 DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 63
DTSVFI E+ R PDR A +VVTL ELR+GVL A+ + A+RL+T +
Sbjct 11 DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES 65
Query 64 AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM- 122
E L +D+ + WA L L + RV IND WIAA A + + ++TQD+D+AA+
Sbjct 66 VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD 125
Query 123 --PDVEVITI 130
VE+I +
Sbjct 126 GAASVEIIRV 135
>gi|194320087|pdb|3DBO|B Chain B, Crystal Structure Of A Member Of The Vapbc Family Of
Toxin- Antitoxin Systems, Vapbc-5, From Mycobacterium Tuberculosis
Length=150
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)
Query 9 DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 63
DTSVFI E+ R PDR A +VVTL ELR+GVL A+ + A+RL+T +
Sbjct 26 DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES 80
Query 64 AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM- 122
E L +D+ + WA L L + RV IND WIAA A + + ++TQD+D+AA+
Sbjct 81 VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD 140
Query 123 --PDVEVITI 130
VE+I +
Sbjct 141 GAASVEIIRV 150
>gi|254820582|ref|ZP_05225583.1| hypothetical protein MintA_11676 [Mycobacterium intracellulare
ATCC 13950]
Length=135
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/114 (42%), Positives = 65/114 (58%), Gaps = 0/114 (0%)
Query 9 DTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFE 68
DTSVFI E+ R + G +VVTL EL +GVL AS + A+RL+T + E
Sbjct 11 DTSVFIATESGRPLDAALIPDQVGTTVVTLAELHVGVLAASTSDIRAQRLATLESIADIE 70
Query 69 PLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM 122
L +D+ + WA L L RV IND WIAA A + G+ ++TQD+D+A +
Sbjct 71 ALPVDDDAARMWARLRIHLAETGQRVRINDLWIAAIAASRGLPVVTQDDDFAVL 124
>gi|254774872|ref|ZP_05216388.1| hypothetical protein MaviaA2_09395 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=127
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/116 (38%), Positives = 65/116 (57%), Gaps = 0/116 (0%)
Query 7 LADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQR 66
+ DTSVFI E+ R + E +V+TL EL GVL A+ + A+RL+T +
Sbjct 1 MLDTSVFIASESGRHLDEARIPDEVATTVITLAELHAGVLAATTSDVRAQRLATLESIAD 60
Query 67 FEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM 122
E L +D+ + WA L L A R+ ND WIA A + G+ ++TQD+D+AA+
Sbjct 61 MEMLPVDDDAARMWARLRIHLAEAGRRMRANDLWIAGIAASRGLPVVTQDDDFAAL 116
>gi|41408125|ref|NP_960961.1| hypothetical protein MAP2027c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396480|gb|AAS04344.1| hypothetical protein MAP_2027c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461800|gb|EGO40658.1| putative nucleic acid-binding protein, contains PIN domain [Mycobacterium
avium subsp. paratuberculosis S397]
Length=135
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/115 (42%), Positives = 64/115 (56%), Gaps = 2/115 (1%)
Query 9 DTSVFIGIEATR-FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRF 67
DTSVFI E+ R D R E +VVTL EL GVL A+ A+RL+T +
Sbjct 11 DTSVFIASESGRQLDEARIPD-EVATTVVTLAELHAGVLAATTSNVRAQRLATLESIADM 69
Query 68 EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM 122
E L +D+ WA L L A R+ ND WIAA A + G+ ++TQD+D+AA+
Sbjct 70 EMLPVDDDAVRMWARLRIHLAEAGRRMRANDLWIAAIAASRGLPVVTQDDDFAAL 124
>gi|289749125|ref|ZP_06508503.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689712|gb|EFD57141.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=108
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/111 (41%), Positives = 65/111 (59%), Gaps = 8/111 (7%)
Query 23 PDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWAL 82
PDR A +VVTL ELR+GVL A+ + A+RL+T + E L +D+ + WA
Sbjct 3 PDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWAR 57
Query 83 LVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM---PDVEVITI 130
L L + RV IND WIAA A + + ++TQD+D+AA+ VE+I +
Sbjct 58 LRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV 108
>gi|340625683|ref|YP_004744135.1| hypothetical protein MCAN_06641 [Mycobacterium canettii CIPT
140010059]
gi|340003873|emb|CCC43004.1| putative uncharacterized protein mb0684 [Mycobacterium canettii
CIPT 140010059]
Length=137
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/118 (43%), Positives = 71/118 (61%), Gaps = 10/118 (8%)
Query 7 LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 63
L DTSVFI E A P+R A +SV+T+GEL+LGVL A +RR T L
Sbjct 10 LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGVLNAGDSATRSRRADTLAL 64
Query 64 AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATAVAHGIAILTQDNDY 119
A+ + + + EAV + A LV+ RAA +R V + D+ IAATA+ HG+ ++T+D D+
Sbjct 65 ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAIEHGLPLVTRDADF 122
>gi|302036027|ref|YP_003796349.1| putative PilT-like protein [Candidatus Nitrospira defluvii]
gi|300604091|emb|CBK40423.1| putative PilT-like protein, containing PIN domain [Candidatus
Nitrospira defluvii]
Length=135
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/93 (37%), Positives = 53/93 (57%), Gaps = 0/93 (0%)
Query 33 VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKL 92
+S + LGELR G LQ + + R L + + R L +D S+ +AL+ L+ A
Sbjct 33 MSPIVLGELRAGFLQGAKRDRNERELQLFLHSPRIRVLALDAETSDRYALIRVTLKKAGT 92
Query 93 RVPINDSWIAATAVAHGIAILTQDNDYAAMPDV 125
V +ND WIAA+A+ HG+ +LT D D+ +P +
Sbjct 93 PVAVNDLWIAASAMQHGLPVLTSDRDFQKIPQI 125
>gi|284046267|ref|YP_003396607.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283950488|gb|ADB53232.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=127
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/130 (42%), Positives = 72/130 (56%), Gaps = 9/130 (6%)
Query 5 RALADTSVFIGIEATRFD---PDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTY 61
RALADTSVF+ E+ R PDR A VSVVT EL LGVL+A ARRL+T
Sbjct 3 RALADTSVFVAQESGRTLGELPDRIA-----VSVVTAAELELGVLRARDAATRARRLNTL 57
Query 62 QLAQRFEPL-GIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA 120
+ PL ID + +A + + R+ +D WIAATA+ HG+ ++TQD D+
Sbjct 58 ARVRSAYPLLPIDAETASCFAGIADEELGQGRRLRRHDVWIAATALRHGVPVVTQDADFT 117
Query 121 AMPDVEVITI 130
A V V+ +
Sbjct 118 AFDLVTVLRV 127
>gi|158312409|ref|YP_001504917.1| PilT domain-containing protein [Frankia sp. EAN1pec]
gi|158107814|gb|ABW10011.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=127
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/133 (37%), Positives = 76/133 (58%), Gaps = 11/133 (8%)
Query 3 VRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ 62
+ R + DTSV + + T E VSV+++ EL+ G+L A P+A A RL+
Sbjct 1 MNRGVLDTSVLVATDVTPIP------GELAVSVISIAELQFGILVAKTPQARATRLARLS 54
Query 63 LAQ-RFEPLGIDEAVSEAWALLVSKLRAA--KLRVPINDSWIAATAVAHGIAILTQD-ND 118
Q RF+PL ID+AV++++ L +++ A + R D IAATA AHG +I T++ D
Sbjct 55 TIQRRFDPLPIDDAVADSYGRLAARVVEAGRQPRARTMDLLIAATAHAHGASIYTRNAAD 114
Query 119 YAAMPD-VEVITI 130
A + D + ++TI
Sbjct 115 LAGLEDLLRIVTI 127
>gi|269957981|ref|YP_003327770.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269306662|gb|ACZ32212.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM
15894]
Length=128
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/113 (37%), Positives = 63/113 (56%), Gaps = 5/113 (4%)
Query 7 LADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTY-QLAQ 65
L DT+V I + RFD D +G S+++ EL G+ A PEA A R+ T +L +
Sbjct 3 LLDTNVLIDYDLYRFDAD----VAYGASLLSRAELEFGIRAARTPEAIADRVQTLNRLDE 58
Query 66 RFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDND 118
RF+ L D + ++ ++ S RA+ R+ ND+ IAA A HG A++T + D
Sbjct 59 RFDWLPFDLESTRSYGIVASGARASGARLRGNDALIAAQAHRHGAAVMTANPD 111
>gi|86742786|ref|YP_483186.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86569648|gb|ABD13457.1| PilT protein-like [Frankia sp. CcI3]
Length=127
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 74/131 (57%), Gaps = 11/131 (8%)
Query 5 RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLA 64
R + DTSV + + T E VSV+++ EL+ G+L A P+A A RL+
Sbjct 3 RGVLDTSVLVATDVTPLP------GELAVSVISIAELQFGILVARTPQARATRLARLSAI 56
Query 65 Q-RFEPLGIDEAVSEAWALLVSKL--RAAKLRVPINDSWIAATAVAHGIAILTQD-NDYA 120
Q RF+PL +D+AV++++ L +++ + R D IAATA AHG +I T++ D A
Sbjct 57 QRRFDPLPVDDAVADSYGRLAARVVEVGRQPRARTMDLLIAATAHAHGASIYTRNAADLA 116
Query 121 AMPD-VEVITI 130
+ D + ++TI
Sbjct 117 GLEDLLRIVTI 127
>gi|256828120|ref|YP_003156848.1| twitching motility protein PilT [Desulfomicrobium baculatum DSM
4028]
gi|256577296|gb|ACU88432.1| PilT protein domain protein [Desulfomicrobium baculatum DSM 4028]
Length=128
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (33%), Positives = 63/124 (51%), Gaps = 6/124 (4%)
Query 3 VRRALADTSVFIGIEATRFDPDR---FAGYEW-GVSVVTLGELRLGVLQASGPEAAARRL 58
+ R L DT+++ G A R D + G E G+S ++LGEL G + E R L
Sbjct 1 MNRILIDTNIYSG--ALRGDQELIRVLRGAEHIGLSAISLGELFSGFKGGNREEENKREL 58
Query 59 STYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDND 118
+ + R +DE +E + ++ +LR + +P ND WIAA A HG A+ TQD
Sbjct 59 GIFLDSPRVALYPVDEYTAEHYCSILDQLRRSGTPIPTNDIWIAAIAFQHGFALFTQDRQ 118
Query 119 YAAM 122
++ +
Sbjct 119 FSKI 122
>gi|336179974|ref|YP_004585349.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334860954|gb|AEH11428.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=127
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/131 (39%), Positives = 76/131 (59%), Gaps = 11/131 (8%)
Query 5 RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ-L 63
R + DTSV + AT P G E VSV+++ EL+ GVL A PEA A RL+ L
Sbjct 3 RGILDTSVLV---ATDVAP--IPG-ELAVSVISIAELQFGVLVARTPEARANRLARLSAL 56
Query 64 AQRFEPLGIDEAVSEAWALLVSKLR--AAKLRVPINDSWIAATAVAHGIAILTQD-NDYA 120
+RF+PL +D+AV++++ L +++ + R D IAATA AH ++ T++ D A
Sbjct 57 QRRFDPLPVDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRNAADLA 116
Query 121 AMPD-VEVITI 130
+ D V ++TI
Sbjct 117 GLEDLVRIVTI 127
>gi|344338644|ref|ZP_08769575.1| PilT protein domain protein [Thiocapsa marina 5811]
gi|343801226|gb|EGV19169.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=129
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/131 (36%), Positives = 71/131 (55%), Gaps = 8/131 (6%)
Query 3 VRRALADTSVFIGIEATRFDPD---RFAGYE-WGVSVVTLGELRLGVLQASGPEAAARR- 57
+RRAL DT+++ A R +PD R + SVV+LGEL G +A EA R+
Sbjct 1 MRRALIDTNIYS--LAMRGEPDVVDRLQQLDDLAFSVVSLGELLAG-FRAGHREAKNRQE 57
Query 58 LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDN 117
L + + R L DE ++ +A +V L+ A +P ND WIAA A HG+ + T+D
Sbjct 58 LGRFLDSPRVRLLAADEETADFYAAIVVALKRAGTPIPTNDIWIAAVAQRHGLPVYTRDA 117
Query 118 DYAAMPDVEVI 128
+ A+P + +I
Sbjct 118 HFQAVPGLLLI 128
>gi|256372766|ref|YP_003110590.1| hypothetical protein Afer_2016 [Acidimicrobium ferrooxidans DSM
10331]
gi|256009350|gb|ACU54917.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM
10331]
Length=112
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/106 (39%), Positives = 59/106 (56%), Gaps = 0/106 (0%)
Query 5 RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLA 64
RAL DTS F+ E+ R + VSVVT+ EL LGVL A+ + AR + +
Sbjct 2 RALLDTSFFVATESGRPLGAMEGVTDTEVSVVTVAELTLGVLMANDDDRPARVATLSAVE 61
Query 65 QRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGI 110
++PL +D V+ +A + + L A + RVPI D +AATA+ GI
Sbjct 62 STWDPLPVDAEVARQFARVAAVLHAERRRVPILDVLVAATAMVEGI 107
>gi|332671244|ref|YP_004454252.1| PilT protein domain-containing protein [Cellulomonas fimi ATCC
484]
gi|332340282|gb|AEE46865.1| PilT protein domain protein [Cellulomonas fimi ATCC 484]
Length=128
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (34%), Positives = 59/113 (53%), Gaps = 5/113 (4%)
Query 7 LADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST-YQLAQ 65
L DT+V I + RF+PD +G S+++ EL GV A EAAA RL+ + L
Sbjct 3 LLDTNVLIDLHLYRFEPDE----TYGASILSRAELEFGVNAAPTDEAAAERLARLHDLDA 58
Query 66 RFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDND 118
F+ L D+ + ++ ++ + RA RV D+ IAA A H ++T + D
Sbjct 59 VFDWLEFDKPSTRSYGIVAHRARATGARVRGKDALIAAQAHRHAAPVMTANVD 111
>gi|94265566|ref|ZP_01289311.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93453895|gb|EAT04250.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=136
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (32%), Positives = 69/133 (52%), Gaps = 10/133 (7%)
Query 3 VRRALADTSVFIGIEATRFDP-----DRFAGYEWGVSVVTLGELRLGVLQASGPEAAARR 57
++R L DT+ ++ + R P R A Y G++ + LGEL G + G E RR
Sbjct 1 MKRILLDTNFYVAFK--RNTPLAAEIIRRADY-IGLNTIVLGELLAG-FRCGGRETVNRR 56
Query 58 -LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD 116
L + + R E L IDE +E +A + L+ +P ND WIAA+A+ HG+A+ + D
Sbjct 57 ELDQFIDSPRVELLDIDEETTEFYARVFRALKEKGRPIPTNDLWIAASALRHGLALASFD 116
Query 117 NDYAAMPDVEVIT 129
++ + + +I
Sbjct 117 AHFSYIDGMLLIN 129
>gi|15607805|ref|NP_215179.1| hypothetical protein Rv0665 [Mycobacterium tuberculosis H37Rv]
gi|15840068|ref|NP_335105.1| hypothetical protein MT0693 [Mycobacterium tuberculosis CDC1551]
gi|31791849|ref|NP_854342.1| hypothetical protein Mb0684 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=112
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/104 (43%), Positives = 60/104 (58%), Gaps = 10/104 (9%)
Query 7 LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 63
L DTSVFI E A P+R A +SV+T+GEL+LG+L A +RR T L
Sbjct 10 LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGLLNAGDSATRSRRADTLAL 64
Query 64 AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATA 105
A+ + + + EAV + A LV+ RAA +R V + D+ IAATA
Sbjct 65 ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA 108
>gi|288917699|ref|ZP_06412062.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288350914|gb|EFC85128.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=127
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/131 (35%), Positives = 73/131 (56%), Gaps = 11/131 (8%)
Query 5 RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ-L 63
R + DTSV + AT P G E +SV+++ EL GVL A E A RL+ L
Sbjct 3 RGILDTSVLV---ATDVAP--IPG-ELAISVISIAELHFGVLVAKTSETRANRLARLSAL 56
Query 64 AQRFEPLGIDEAVSEAWALLVSKLR--AAKLRVPINDSWIAATAVAHGIAILTQD-NDYA 120
+RF+PL +D+AV++++ L +++ + R D IAATA AH ++ T++ D
Sbjct 57 QRRFDPLPLDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRNAADLT 116
Query 121 AMPD-VEVITI 130
+ D +E++T+
Sbjct 117 GLEDLIEIVTV 127
>gi|301060111|ref|ZP_07200978.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
gi|300445623|gb|EFK09521.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
Length=131
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/92 (30%), Positives = 48/92 (53%), Gaps = 0/92 (0%)
Query 32 GVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAK 91
G S +++GEL G + L+ + + R IDE ++ +A +++ LR A
Sbjct 32 GFSAISIGELFSGFKGGNRESKNREELNLFLDSPRVVVHAIDEGTADFYASILNNLRIAG 91
Query 92 LRVPINDSWIAATAVAHGIAILTQDNDYAAMP 123
+P ND WIAA A +G + ++DN + ++P
Sbjct 92 TPIPTNDIWIAAIAFQYGYQLFSKDNHFKSIP 123
>gi|300780332|ref|ZP_07090188.1| possible nucleic acid-binding protein [Corynebacterium genitalium
ATCC 33030]
gi|300534442|gb|EFK55501.1| possible nucleic acid-binding protein [Corynebacterium genitalium
ATCC 33030]
Length=132
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (32%), Positives = 71/129 (56%), Gaps = 8/129 (6%)
Query 5 RALADTSVFIGIEATRFDP--DRFAGY---EWGVSVVTLGELRLGVLQASGPEAAARRLS 59
R L DT+V+I +E + DR + + GVS V LGEL G L++ P A + +
Sbjct 2 RYLFDTNVWIDLERGSYPHVLDRASSCTRDQVGVSTVVLGELYAGALRSMDPIRARQSID 61
Query 60 TYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILT-QDND 118
T+ + +G+DE +E +A + + L++ + ND WIAA A+ + ++T D++
Sbjct 62 TFLAG--WPRIGVDERTAEIYAEIRAALQSQGRVIGPNDLWIAAQALREDVVLVTANDDE 119
Query 119 YAAMPDVEV 127
++ +P +EV
Sbjct 120 FSRVPSLEV 128
>gi|298530242|ref|ZP_07017644.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509616|gb|EFI33520.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=130
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/122 (27%), Positives = 63/122 (52%), Gaps = 8/122 (6%)
Query 3 VRRALADTSVFIGIEATRFDPDRFAGY-----EWGVSVVTLGELRLGVLQASGPEAAARR 57
++R + DT+++ A + DP+ A Y + G+S +++GEL G + +
Sbjct 1 MKRVMIDTNIYS--LALKGDPE-VADYLRKVDKIGISTISIGELLSGFKGGNREDKNREE 57
Query 58 LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDN 117
L + + R +D ++ +A ++ KL++A +P ND WIAA+A HG + ++D
Sbjct 58 LDFFLDSPRVVVHAVDVETADFYASILDKLKSAGTPIPTNDMWIAASAFQHGYKLFSRDR 117
Query 118 DY 119
+
Sbjct 118 HF 119
>gi|145595623|ref|YP_001159920.1| PilT domain-containing protein [Salinispora tropica CNB-440]
gi|145304960|gb|ABP55542.1| PilT protein domain protein [Salinispora tropica CNB-440]
Length=127
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/130 (38%), Positives = 74/130 (57%), Gaps = 14/130 (10%)
Query 5 RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLA 64
R + DTS+ I + T E +SV +L EL+ GVL A +A A RL+
Sbjct 3 RGILDTSILIATDVTPIPG------ELAISVTSLAELQFGVLAAKTADARAGRLARLSAI 56
Query 65 Q-RFEPLGIDEAVSEAWALLVSKL----RAAKLRVPINDSWIAATAVAHGIAILTQD-ND 118
Q RF+PL IDEAV++++A L +++ R + RV D IAATA AH A+ T++ +D
Sbjct 57 QRRFDPLPIDEAVADSYARLAARVVEIGRQPRARV--MDLLIAATAHAHDAAVYTRNADD 114
Query 119 YAAMPDVEVI 128
+A + D+ +I
Sbjct 115 FAGLEDLVLI 124
>gi|224369081|ref|YP_002603245.1| PIN domain protein (PilT N terminus) [Desulfobacterium autotrophicum
HRM2]
gi|223691798|gb|ACN15081.1| PIN domain protein (PilT N terminus) [Desulfobacterium autotrophicum
HRM2]
Length=130
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (26%), Positives = 61/124 (50%), Gaps = 6/124 (4%)
Query 1 VNVRRALADTSVFIGIEATRFDPDRFAGY----EWGVSVVTLGELRLGVLQASGPEAAAR 56
+ V+R L DT+++ A R D + E G+SV+++GEL G +
Sbjct 1 MEVKRILIDTNIYS--HAMRADHEVTHLLRKVDEIGISVISVGELYSGFKGGTRERGNRD 58
Query 57 RLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD 116
L + + R +D ++ ++ +++ L+ A +P ND WIA+ A HG+ + T+D
Sbjct 59 ELELFLDSPRVVLYSVDIQTADYYSEIITNLKKAGTPIPTNDIWIASVAFQHGLKLFTKD 118
Query 117 NDYA 120
++
Sbjct 119 VHFS 122
>gi|171913870|ref|ZP_02929340.1| PilT protein domain protein [Verrucomicrobium spinosum DSM 4136]
Length=137
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/110 (35%), Positives = 59/110 (54%), Gaps = 12/110 (10%)
Query 17 EATRFDPD-------RFAGYEWGVSVVTLGELRLGVLQASGPEAAAR-RLSTY--QLAQR 66
EAT+ PD R + VS + LGEL G+L + P+ R RL + Q +R
Sbjct 12 EATKPAPDPQVVAWLRSHESQLVVSPIILGELEYGIL--TLPKGQRRTRLEKWFAQGVRR 69
Query 67 FEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD 116
+ L +D + WA L++ L+ +P+ DS IAATA+AHG+ + T++
Sbjct 70 IQSLDVDADTASHWANLLASLKRNGHAMPVKDSLIAATALAHGLTVATRN 119
>gi|158521823|ref|YP_001529693.1| PilT domain-containing protein [Desulfococcus oleovorans Hxd3]
gi|158510649|gb|ABW67616.1| PilT protein domain protein [Desulfococcus oleovorans Hxd3]
Length=132
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/126 (28%), Positives = 64/126 (51%), Gaps = 8/126 (6%)
Query 3 VRRALADTSVFIGIEATRFDPDRFAGY----EWGVSVVTLGELRLGVLQASGPEAAARR- 57
+R+ L DT+++ A + DP + G S V++GEL G +A E+ R
Sbjct 1 MRKVLIDTNIYS--LAMKGDPPTVQVLKKIDQIGFSAVSIGELFSG-FKAGNRESENREE 57
Query 58 LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDN 117
L+ + + R +DE ++ +A +++ L+ A +P ND W+AA A HG + ++D
Sbjct 58 LNIFLDSPRVVIHALDEETADFYATILNNLKKAGTPIPTNDIWLAAVAFQHGYKLYSRDR 117
Query 118 DYAAMP 123
+ +P
Sbjct 118 HFKLIP 123
>gi|119717550|ref|YP_924515.1| PilT domain-containing protein [Nocardioides sp. JS614]
gi|119538211|gb|ABL82828.1| PilT protein domain protein [Nocardioides sp. JS614]
Length=143
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/130 (38%), Positives = 64/130 (50%), Gaps = 14/130 (10%)
Query 5 RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASG--PEAAARRLSTYQ 62
RAL DT++ I + R P+ E +S VTL EL G G P A A R
Sbjct 7 RALIDTNIVILRD--RLAPEDLPD-EMSISAVTLAELSAGPHAVVGDDPRARAERGRRTA 63
Query 63 LAQR----FEPLGIDEAVSEAWALLVSKLRAAKLRVPIN---DSWIAATAVAHGIAILTQ 115
+ QR FEPL D A + + L +RA R P D IAATAVA+G+A+ T
Sbjct 64 ILQRTESEFEPLAFDAAAARVYGQLSGAVRAHG-RTPRRRHADLQIAATAVANGLALYTT 122
Query 116 D-NDYAAMPD 124
+ +DYA + D
Sbjct 123 NPDDYAGLDD 132
>gi|91205836|ref|YP_538191.1| toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii
RML369-C]
gi|157826803|ref|YP_001495867.1| toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii
OSU 85-389]
gi|91069380|gb|ABE05102.1| Toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii
RML369-C]
gi|157802107|gb|ABV78830.1| Toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii
OSU 85-389]
Length=134
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (25%), Positives = 67/129 (52%), Gaps = 7/129 (5%)
Query 7 LADTSVFIGIEATRFDPDRFAGYEWG-VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQ 65
+ DTS+ I +E + ++ Y+ ++ + L EL +G+ + + L+ + +
Sbjct 4 IVDTSIIIALERGKISTKAWSNYDQAYINPIVLTELLIGIDRVKDENKRGQCLTFIEYVK 63
Query 66 RF---EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDYAA 121
P GI+EA +A ++ L ++ + ++D IAATA+ + ILT + D+
Sbjct 64 SLFTLLPFGIEEAY--VYAKIIDNLYKERITIGVHDLLIAATAITYNYPILTLNTKDFKR 121
Query 122 MPDVEVITI 130
+P++EV+T+
Sbjct 122 IPELEVLTV 130
>gi|148262123|ref|YP_001228829.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
gi|146395623|gb|ABQ24256.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=146
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (28%), Positives = 62/129 (49%), Gaps = 7/129 (5%)
Query 7 LADTSVFIGIEATRFDPDRFAGYEWG----VSVVTLGELRLGVLQASGPEAAARRLSTYQ 62
L DT ++I +E P A +S VT+ EL+ G A + +RL+
Sbjct 4 LIDTCIWIDVERGTLAPADVAAVTGEEPVYLSPVTIAELKFGAENAKTADLRQKRLAALT 63
Query 63 LAQRFEPLGIDEAVSEAWALLVSKLR--AAKLRVPINDSWIAATAVAHGIAILTQD-NDY 119
+R L IDE E + + +++R + + + D W+A+ AV HG LT + D+
Sbjct 64 RLKRKPLLMIDETTGEIFGDIAAQIRKHGKQHQYRVQDLWLASQAVQHGFRFLTHNRKDF 123
Query 120 AAMPDVEVI 128
A +P +++I
Sbjct 124 ADIPGLQLI 132
>gi|67458848|ref|YP_246472.1| toxin of toxin-antitoxin system VapC [Rickettsia felis URRWXCal2]
gi|67004381|gb|AAY61307.1| Toxin of toxin-antitoxin system VapC [Rickettsia felis URRWXCal2]
Length=134
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (26%), Positives = 69/129 (54%), Gaps = 7/129 (5%)
Query 7 LADTSVFIGIEATRFDPDRFAGY-EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQ 65
+ DTS+ I +E + +++ Y + +S + L EL +GV + + + L+ + +
Sbjct 4 IIDTSIIIALERGKVSTKQWSHYGQAYISPIVLTELLIGVDRVNNENKRIKCLAFIEYVK 63
Query 66 RF---EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDYAA 121
P GI+E + +A +++ L ++ + +D IAATA+ HG ++LT + D+
Sbjct 64 SLFTILPFGIEEVYT--YARIINDLYKQRITIGTHDMLIAATAITHGYSLLTLNVKDFKR 121
Query 122 MPDVEVITI 130
+ +EV+T+
Sbjct 122 IQGLEVLTV 130
>gi|329912129|ref|ZP_08275687.1| PilT like protein [Oxalobacteraceae bacterium IMCC9480]
gi|327545691|gb|EGF30837.1| PilT like protein [Oxalobacteraceae bacterium IMCC9480]
Length=142
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (35%), Positives = 48/91 (53%), Gaps = 8/91 (8%)
Query 33 VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPL------GIDEAVSEAWALLVSK 86
+S ++L ELR G+ A+ PE R + L QR PL D+ S+++A+L ++
Sbjct 35 LSTISLAELRFGI--AALPEGKRRDTLHFSLEQRVLPLFAGRLLPFDDPASQSYAVLRAR 92
Query 87 LRAAKLRVPINDSWIAATAVAHGIAILTQDN 117
R A L + D +IAA A HG + T+D
Sbjct 93 ARTAGLAIAPADGYIAAIAATHGFTVATRDT 123
>gi|116619645|ref|YP_821801.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116222807|gb|ABJ81516.1| PilT protein domain protein [Candidatus Solibacter usitatus Ellin6076]
Length=125
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (29%), Positives = 50/97 (52%), Gaps = 2/97 (2%)
Query 30 EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRA 89
E + V+ LGE R G+ Q+ + L L L +D+A + +A+L S+L+
Sbjct 27 ELALPVIVLGEYRYGIAQSRNRIRYEKWLK--DLVSNCRVLNVDDATAAEYAILRSELKR 84
Query 90 AKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVE 126
+P ND WIAA A H + ++++D + +P ++
Sbjct 85 GGSPIPANDVWIAALARQHSMPVISRDEHFDFVPKLK 121
>gi|94266187|ref|ZP_01289897.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|94267045|ref|ZP_01290687.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93452251|gb|EAT02899.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93453235|gb|EAT03690.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=128
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (29%), Positives = 46/90 (52%), Gaps = 0/90 (0%)
Query 33 VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKL 92
+S +T+GEL G L+ + + R + + IDE +E +A ++ +LR
Sbjct 33 ISAITVGELLSGFRGGQRERENRAELADFLDSPRVKTVSIDEETAEFYAAILDQLRRRGQ 92
Query 93 RVPINDSWIAATAVAHGIAILTQDNDYAAM 122
+P ND WIAA A+ HG+ + + D + +
Sbjct 93 PIPTNDIWIAAAAMQHGLTLYSFDTHFQKI 122
>gi|115526131|ref|YP_783042.1| PilT domain-containing protein [Rhodopseudomonas palustris BisA53]
gi|115520078|gb|ABJ08062.1| PilT protein domain protein [Rhodopseudomonas palustris BisA53]
Length=147
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (54%), Gaps = 11/95 (11%)
Query 33 VSVVTLGELRLGVLQASGPEAAARRLSTYQ-LAQRFEP------LGIDEAVSEAWALLVS 85
+SVVTL ELR G+ + AARR L+ R P L IDE V W LLV
Sbjct 37 ISVVTLAELRFGIECVAD---AARRADLNDWLSHRVRPMFEQRVLPIDEDVMLKWRLLVE 93
Query 86 KLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDY 119
+ R A+ D IAATA+ HG+ ++++D +DY
Sbjct 94 QGRKARQSFSQPDLIIAATALQHGLTVVSRDSSDY 128
>gi|309790890|ref|ZP_07685433.1| PilT protein domain protein [Oscillochloris trichoides DG6]
gi|308227078|gb|EFO80763.1| PilT protein domain protein [Oscillochloris trichoides DG6]
Length=129
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (30%), Positives = 48/84 (58%), Gaps = 2/84 (2%)
Query 36 VTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVP 95
+ LGEL G L++ PE ++++ + + L ID+ ++ +A++ ++LR +P
Sbjct 37 IVLGELYYGALRSRKPEENSQQI--LEFGSKNVILAIDDITAQHYAIIKNQLRIKGRPIP 94
Query 96 INDSWIAATAVAHGIAILTQDNDY 119
ND WIAA A+ + + I T+D +
Sbjct 95 ENDLWIAAIAMQYQLVIATRDKHF 118
>gi|258591576|emb|CBE67877.1| PilT protein-like [NC10 bacterium 'Dutch sediment']
Length=133
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (30%), Positives = 46/87 (53%), Gaps = 0/87 (0%)
Query 33 VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKL 92
++ V +GEL G ++ + L + + R + I+E +E +A+++ L A
Sbjct 33 LNAVIVGELLAGFMRGKYRKKNQLELQQFLASPRVSIVDINEETAERYAVILDALWKAGT 92
Query 93 RVPINDSWIAATAVAHGIAILTQDNDY 119
+P ND WIAA+A+ HG +L+ D Y
Sbjct 93 PIPTNDIWIAASAMQHGCRLLSADAHY 119
>gi|301064233|ref|ZP_07204676.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
gi|300441678|gb|EFK06000.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
Length=127
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (31%), Positives = 42/88 (48%), Gaps = 0/88 (0%)
Query 32 GVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAK 91
G+ V+ LGELR G + L + L +DE S ++ V++LR A
Sbjct 27 GMPVIVLGELRTGFRSGKYFDRNELELQAFLNNPVVHILDVDEIASSHYSETVAELRLAG 86
Query 92 LRVPINDSWIAATAVAHGIAILTQDNDY 119
+P ND W+AA A+ G ++T D +
Sbjct 87 TPIPTNDIWVAAIAIREGAVVVTYDGHF 114
>gi|148262790|ref|YP_001229496.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
gi|146396290|gb|ABQ24923.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=141
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/88 (36%), Positives = 50/88 (57%), Gaps = 4/88 (4%)
Query 33 VSVVTLGELRLGVLQASGP--EAAARRLSTYQLAQRF--EPLGIDEAVSEAWALLVSKLR 88
+SV+TLGEL+ G+ + SG + + + LA+RF L +D + AW L
Sbjct 36 LSVLTLGELQKGISKLSGSTRKDELQAWVEHDLAERFAGRILDLDLETALAWGTLQGDAE 95
Query 89 AAKLRVPINDSWIAATAVAHGIAILTQD 116
++P+ DS IAATA AHG+ ++T++
Sbjct 96 RKGEKLPVMDSLIAATATAHGLIVVTRN 123
>gi|84497437|ref|ZP_00996259.1| hypothetical protein JNB_14623 [Janibacter sp. HTCC2649]
gi|84382325|gb|EAP98207.1| hypothetical protein JNB_14623 [Janibacter sp. HTCC2649]
Length=140
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/127 (34%), Positives = 63/127 (50%), Gaps = 13/127 (10%)
Query 2 NVRRALADTSVFIGIEATRFDPDRFAGY--EWGVSVVTLGELRLGVLQASGPEAAARRLS 59
V RAL DTSV I P A E VS ++L EL G+ E+AAR+L
Sbjct 11 QVERALLDTSVLID------PPHGLASLATEVVVSTISLAELAHGLHVPDAVESAARQLR 64
Query 60 TYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPIN---DSWIAATAVAHGIAILTQD 116
++ FEPL A + + L +R+A R P D +A+ AV+ G+AILT++
Sbjct 65 YQRILDVFEPLPYSVAAARTYGALADVVRSAG-RSPRQRRFDLLLASVAVSQGVAILTRN 123
Query 117 -NDYAAM 122
D++ +
Sbjct 124 PRDFSGL 130
>gi|56479529|ref|YP_161118.1| virulence associated protein VapC [Aromatoleum aromaticum EbN1]
gi|56315572|emb|CAI10217.1| conserved hypothetical protein, similar to virulence associated
protein VapC [Aromatoleum aromaticum EbN1]
Length=136
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/118 (32%), Positives = 57/118 (49%), Gaps = 9/118 (7%)
Query 5 RALADTSVFIGIEATRFDPD------RFAGYEWGVSVVTLGELRLGVLQASGPEAAARRL 58
R L DT++ I I A P+ R A E +SV+TLGELR G ++ + A +
Sbjct 4 RYLLDTNICIYI-AKHNPPEVRQRFARHAASELAMSVITLGELRFGAEKSQARDKALAAI 62
Query 59 STYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD 116
+ R PL E+V E + + + L+ + ND W+AA A A G ++T +
Sbjct 63 QRLEATVRIAPL--TESVGEHYGQIRANLQHKGQPIGNNDLWLAAHARAEGWILVTNN 118
>gi|240171945|ref|ZP_04750604.1| PilT protein-like [Mycobacterium kansasii ATCC 12478]
Length=131
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/122 (36%), Positives = 62/122 (51%), Gaps = 10/122 (8%)
Query 7 LADTSVFIGIEATRFDPDRFAGY--EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ-L 63
L DTSV I DP A E +S +T+ EL G L A+ P AARR + Q +
Sbjct 5 LLDTSVVIDWH----DPAIVAALPDEMAISAITVAELAAGPLLATTPIEAARRQARLQEV 60
Query 64 AQRFEPLGIDEAVSEAWALLVSKL--RAAKLRVPINDSWIAATAVAHGIAILTQD-NDYA 120
R EPL D A ++ L+V+ + K R D IAATA A+G+ + +++ D+A
Sbjct 61 ESRLEPLPFDGAAVRSYGLIVAAVVHEGRKPRSRFADMLIAATAHANGLDLYSRNAEDFA 120
Query 121 AM 122
+
Sbjct 121 GL 122
>gi|304415075|ref|ZP_07395814.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
gi|304283071|gb|EFL91495.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
Length=141
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/91 (36%), Positives = 48/91 (53%), Gaps = 8/91 (8%)
Query 33 VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGI------DEAVSEAWALLVSK 86
++ ++L ELR GV A+ P + + L QR PL + D AVSEA+A+L +
Sbjct 35 LAAISLAELRFGV--AALPGGKKKEILHNSLEQRVVPLFMGRILPFDTAVSEAYAMLRVQ 92
Query 87 LRAAKLRVPINDSWIAATAVAHGIAILTQDN 117
R A + D +IAA AV H + + T+D
Sbjct 93 ARTAGKAIGTADGYIAAIAVVHHLIVATRDT 123
>gi|15892302|ref|NP_360016.1| hypothetical protein RC0379 [Rickettsia conorii str. Malish 7]
gi|15619444|gb|AAL02917.1| unknown [Rickettsia conorii str. Malish 7]
Length=134
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (25%), Positives = 64/129 (50%), Gaps = 7/129 (5%)
Query 7 LADTSVFIGIEATRFDPDRFAGY-EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQ 65
+ DT++ I +E + +++ Y + +S + L EL +GV + + L+ + +
Sbjct 4 IIDTAIIIALEREKVSTKQWSHYGQTYISPIVLTELLIGVYRVKNENKRIKCLAFIEYVK 63
Query 66 RF---EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDYAA 121
P GI+E + +A + L ++ + +D IAATA+ G ILT + D+
Sbjct 64 SLFTILPFGIEEVYT--YARITHDLYTQRITIGTHDMLIAATAITKGFLILTLNVKDFKR 121
Query 122 MPDVEVITI 130
+ +EV+T+
Sbjct 122 IQGLEVLTV 130
>gi|326799253|ref|YP_004317072.1| twitching mobility protein PilT [Sphingobacterium sp. 21]
gi|326550017|gb|ADZ78402.1| PilT protein domain protein [Sphingobacterium sp. 21]
Length=130
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (27%), Positives = 49/92 (54%), Gaps = 2/92 (2%)
Query 36 VTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVP 95
V L EL LG ++S P+ ++ ++ + + D ++A+A++ + L +P
Sbjct 38 VVLAELLLGAYRSSNPKKHLSQIRSF--LSKCNVIRGDIDTADAYAVIKAALLKKGKPIP 95
Query 96 INDSWIAATAVAHGIAILTQDNDYAAMPDVEV 127
ND WIA+ A H + ++T+D + + DV++
Sbjct 96 ENDIWIASIAKQHNLTLITKDKHFKEIQDVQI 127
Lambda K H
0.320 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127765705240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40