BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0595c

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15839998|ref|NP_335035.1|  hypothetical protein MT0625 [Mycoba...   259    7e-68
gi|15607735|ref|NP_215109.1|  hypothetical protein Rv0595c [Mycob...   258    2e-67
gi|289756674|ref|ZP_06516052.1|  conserved hypothetical protein [...   258    3e-67
gi|340625625|ref|YP_004744077.1|  hypothetical protein MCAN_06011...   257    5e-67
gi|240169379|ref|ZP_04748038.1|  hypothetical protein MkanA1_0870...   166    1e-39
gi|15607767|ref|NP_215141.1|  hypothetical protein Rv0627 [Mycoba...  81.3    5e-14
gi|194320087|pdb|3DBO|B  Chain B, Crystal Structure Of A Member O...  81.3    5e-14
gi|254820582|ref|ZP_05225583.1|  hypothetical protein MintA_11676...  79.0    2e-13
gi|254774872|ref|ZP_05216388.1|  hypothetical protein MaviaA2_093...  73.9    7e-12
gi|41408125|ref|NP_960961.1|  hypothetical protein MAP2027c [Myco...  73.6    1e-11
gi|289749125|ref|ZP_06508503.1|  conserved hypothetical protein [...  73.2    1e-11
gi|340625683|ref|YP_004744135.1|  hypothetical protein MCAN_06641...  72.8    2e-11
gi|302036027|ref|YP_003796349.1|  putative PilT-like protein [Can...  68.6    3e-10
gi|284046267|ref|YP_003396607.1|  PilT protein domain protein [Co...  65.9    2e-09
gi|158312409|ref|YP_001504917.1|  PilT domain-containing protein ...  65.9    2e-09
gi|269957981|ref|YP_003327770.1|  PilT protein domain-containing ...  63.5    9e-09
gi|86742786|ref|YP_483186.1|  PilT protein-like protein [Frankia ...  63.2    1e-08
gi|256828120|ref|YP_003156848.1|  twitching motility protein PilT...  62.8    2e-08
gi|336179974|ref|YP_004585349.1|  PilT protein domain-containing ...  62.0    3e-08
gi|344338644|ref|ZP_08769575.1|  PilT protein domain protein [Thi...  60.8    6e-08
gi|256372766|ref|YP_003110590.1|  hypothetical protein Afer_2016 ...  60.5    9e-08
gi|332671244|ref|YP_004454252.1|  PilT protein domain-containing ...  56.6    1e-06
gi|94265566|ref|ZP_01289311.1|  PilT protein-like [delta proteoba...  56.2    1e-06
gi|15607805|ref|NP_215179.1|  hypothetical protein Rv0665 [Mycoba...  55.8    2e-06
gi|288917699|ref|ZP_06412062.1|  PilT protein domain protein [Fra...  55.8    2e-06
gi|301060111|ref|ZP_07200978.1|  toxin-antitoxin system, toxin co...  55.1    3e-06
gi|300780332|ref|ZP_07090188.1|  possible nucleic acid-binding pr...  52.8    2e-05
gi|298530242|ref|ZP_07017644.1|  PilT protein domain protein [Des...  52.4    2e-05
gi|145595623|ref|YP_001159920.1|  PilT domain-containing protein ...  52.0    3e-05
gi|224369081|ref|YP_002603245.1|  PIN domain protein (PilT N term...  51.6    4e-05
gi|171913870|ref|ZP_02929340.1|  PilT protein domain protein [Ver...  51.2    4e-05
gi|158521823|ref|YP_001529693.1|  PilT domain-containing protein ...  51.2    5e-05
gi|119717550|ref|YP_924515.1|  PilT domain-containing protein [No...  50.4    9e-05
gi|91205836|ref|YP_538191.1|  toxin of toxin-antitoxin (TA) syste...  50.1    1e-04
gi|148262123|ref|YP_001228829.1|  PilT domain-containing protein ...  50.1    1e-04
gi|67458848|ref|YP_246472.1|  toxin of toxin-antitoxin system Vap...  50.1    1e-04
gi|329912129|ref|ZP_08275687.1|  PilT like protein [Oxalobacterac...  50.1    1e-04
gi|116619645|ref|YP_821801.1|  PilT domain-containing protein [Ca...  49.7    1e-04
gi|94266187|ref|ZP_01289897.1|  PilT protein-like [delta proteoba...  49.3    2e-04
gi|115526131|ref|YP_783042.1|  PilT domain-containing protein [Rh...  49.3    2e-04
gi|309790890|ref|ZP_07685433.1|  PilT protein domain protein [Osc...  48.9    2e-04
gi|258591576|emb|CBE67877.1|  PilT protein-like [NC10 bacterium '...  48.5    3e-04
gi|301064233|ref|ZP_07204676.1|  toxin-antitoxin system, toxin co...  47.8    5e-04
gi|148262790|ref|YP_001229496.1|  PilT domain-containing protein ...  47.4    7e-04
gi|84497437|ref|ZP_00996259.1|  hypothetical protein JNB_14623 [J...  47.4    8e-04
gi|56479529|ref|YP_161118.1|  virulence associated protein VapC [...  47.0    9e-04
gi|240171945|ref|ZP_04750604.1|  PilT protein-like [Mycobacterium...  47.0    0.001
gi|304415075|ref|ZP_07395814.1|  PIN domain-containing addiction ...  45.8    0.002
gi|15892302|ref|NP_360016.1|  hypothetical protein RC0379 [Ricket...  45.8    0.002
gi|326799253|ref|YP_004317072.1|  twitching mobility protein PilT...  45.8    0.002


>gi|15839998|ref|NP_335035.1| hypothetical protein MT0625 [Mycobacterium tuberculosis CDC1551]
 gi|167969018|ref|ZP_02551295.1| hypothetical protein MtubH3_13717 [Mycobacterium tuberculosis 
H37Ra]
 gi|254230934|ref|ZP_04924261.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 27 more sequence titles
 Length=131

 Score =  259 bits (663),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  60
            VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct  2    VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  61

Query  61   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  120
            YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA
Sbjct  62   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  121

Query  121  AMPDVEVITI  130
            AMPDVEVITI
Sbjct  122  AMPDVEVITI  131


>gi|15607735|ref|NP_215109.1| hypothetical protein Rv0595c [Mycobacterium tuberculosis H37Rv]
 gi|31791777|ref|NP_854270.1| hypothetical protein Mb0611c [Mycobacterium bovis AF2122/97]
 gi|121636513|ref|YP_976736.1| hypothetical protein BCG_0641c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 47 more sequence titles
 Length=130

 Score =  258 bits (660),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  60
            +NVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct  1    MNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  60

Query  61   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  120
            YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA
Sbjct  61   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  120

Query  121  AMPDVEVITI  130
            AMPDVEVITI
Sbjct  121  AMPDVEVITI  130


>gi|289756674|ref|ZP_06516052.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289712238|gb|EFD76250.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=130

 Score =  258 bits (658),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 128/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  60
            +NVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct  1    MNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  60

Query  61   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  120
            YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA
Sbjct  61   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  120

Query  121  AMPDVEVITI  130
            AMPD+EVITI
Sbjct  121  AMPDIEVITI  130


>gi|340625625|ref|YP_004744077.1| hypothetical protein MCAN_06011 [Mycobacterium canettii CIPT 
140010059]
 gi|340003815|emb|CCC42941.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=130

 Score =  257 bits (656),  Expect = 5e-67, Method: Compositional matrix adjust.
 Identities = 128/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  60
            +NVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST
Sbjct  1    MNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST  60

Query  61   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  120
            YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAI+TQDNDYA
Sbjct  61   YQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAIVTQDNDYA  120

Query  121  AMPDVEVITI  130
            AMPDVEVITI
Sbjct  121  AMPDVEVITI  130


>gi|240169379|ref|ZP_04748038.1| hypothetical protein MkanA1_08703 [Mycobacterium kansasii ATCC 
12478]
Length=126

 Score =  166 bits (420),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 84/106 (80%), Positives = 92/106 (87%), Gaps = 0/106 (0%)

Query  25   RFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLV  84
            R  G + G+  +TLGELRLGVLQA GPEAAARRLSTYQLAQRFEPL +DE VSEAWALLV
Sbjct  21   RQRGSDAGLPKLTLGELRLGVLQAPGPEAAARRLSTYQLAQRFEPLSVDERVSEAWALLV  80

Query  85   SKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI  130
            SKLRAA LR PINDSWIAATAVAH I I+TQD DY+A+PDVEVIT+
Sbjct  81   SKLRAAHLREPINDSWIAATAVAHQIPIVTQDGDYSAVPDVEVITL  126


>gi|15607767|ref|NP_215141.1| hypothetical protein Rv0627 [Mycobacterium tuberculosis H37Rv]
 gi|31791809|ref|NP_854302.1| hypothetical protein Mb0643 [Mycobacterium bovis AF2122/97]
 gi|121636546|ref|YP_976769.1| hypothetical protein BCG_0673 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 74 more sequence titles
 Length=135

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)

Query  9    DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63
            DTSVFI  E+ R       PDR A      +VVTL ELR+GVL A+  +  A+RL+T + 
Sbjct  11   DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES  65

Query  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM-  122
                E L +D+  +  WA L   L  +  RV IND WIAA A +  + ++TQD+D+AA+ 
Sbjct  66   VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD  125

Query  123  --PDVEVITI  130
                VE+I +
Sbjct  126  GAASVEIIRV  135


>gi|194320087|pdb|3DBO|B Chain B, Crystal Structure Of A Member Of The Vapbc Family Of 
Toxin- Antitoxin Systems, Vapbc-5, From Mycobacterium Tuberculosis
Length=150

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)

Query  9    DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63
            DTSVFI  E+ R       PDR A      +VVTL ELR+GVL A+  +  A+RL+T + 
Sbjct  26   DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES  80

Query  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM-  122
                E L +D+  +  WA L   L  +  RV IND WIAA A +  + ++TQD+D+AA+ 
Sbjct  81   VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD  140

Query  123  --PDVEVITI  130
                VE+I +
Sbjct  141  GAASVEIIRV  150


>gi|254820582|ref|ZP_05225583.1| hypothetical protein MintA_11676 [Mycobacterium intracellulare 
ATCC 13950]
Length=135

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 47/114 (42%), Positives = 65/114 (58%), Gaps = 0/114 (0%)

Query  9    DTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFE  68
            DTSVFI  E+ R         + G +VVTL EL +GVL AS  +  A+RL+T +     E
Sbjct  11   DTSVFIATESGRPLDAALIPDQVGTTVVTLAELHVGVLAASTSDIRAQRLATLESIADIE  70

Query  69   PLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM  122
             L +D+  +  WA L   L     RV IND WIAA A + G+ ++TQD+D+A +
Sbjct  71   ALPVDDDAARMWARLRIHLAETGQRVRINDLWIAAIAASRGLPVVTQDDDFAVL  124


>gi|254774872|ref|ZP_05216388.1| hypothetical protein MaviaA2_09395 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=127

 Score = 73.9 bits (180),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 44/116 (38%), Positives = 65/116 (57%), Gaps = 0/116 (0%)

Query  7    LADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQR  66
            + DTSVFI  E+ R   +     E   +V+TL EL  GVL A+  +  A+RL+T +    
Sbjct  1    MLDTSVFIASESGRHLDEARIPDEVATTVITLAELHAGVLAATTSDVRAQRLATLESIAD  60

Query  67   FEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM  122
             E L +D+  +  WA L   L  A  R+  ND WIA  A + G+ ++TQD+D+AA+
Sbjct  61   MEMLPVDDDAARMWARLRIHLAEAGRRMRANDLWIAGIAASRGLPVVTQDDDFAAL  116


>gi|41408125|ref|NP_960961.1| hypothetical protein MAP2027c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396480|gb|AAS04344.1| hypothetical protein MAP_2027c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336461800|gb|EGO40658.1| putative nucleic acid-binding protein, contains PIN domain [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=135

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 48/115 (42%), Positives = 64/115 (56%), Gaps = 2/115 (1%)

Query  9    DTSVFIGIEATR-FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRF  67
            DTSVFI  E+ R  D  R    E   +VVTL EL  GVL A+     A+RL+T +     
Sbjct  11   DTSVFIASESGRQLDEARIPD-EVATTVVTLAELHAGVLAATTSNVRAQRLATLESIADM  69

Query  68   EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM  122
            E L +D+     WA L   L  A  R+  ND WIAA A + G+ ++TQD+D+AA+
Sbjct  70   EMLPVDDDAVRMWARLRIHLAEAGRRMRANDLWIAAIAASRGLPVVTQDDDFAAL  124


>gi|289749125|ref|ZP_06508503.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689712|gb|EFD57141.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=108

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 45/111 (41%), Positives = 65/111 (59%), Gaps = 8/111 (7%)

Query  23   PDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWAL  82
            PDR A      +VVTL ELR+GVL A+  +  A+RL+T +     E L +D+  +  WA 
Sbjct  3    PDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWAR  57

Query  83   LVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM---PDVEVITI  130
            L   L  +  RV IND WIAA A +  + ++TQD+D+AA+     VE+I +
Sbjct  58   LRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV  108


>gi|340625683|ref|YP_004744135.1| hypothetical protein MCAN_06641 [Mycobacterium canettii CIPT 
140010059]
 gi|340003873|emb|CCC43004.1| putative uncharacterized protein mb0684 [Mycobacterium canettii 
CIPT 140010059]
Length=137

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 50/118 (43%), Positives = 71/118 (61%), Gaps = 10/118 (8%)

Query  7    LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63
            L DTSVFI  E   A    P+R A     +SV+T+GEL+LGVL A      +RR  T  L
Sbjct  10   LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGVLNAGDSATRSRRADTLAL  64

Query  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATAVAHGIAILTQDNDY  119
            A+  + + + EAV  + A LV+  RAA +R  V + D+ IAATA+ HG+ ++T+D D+
Sbjct  65   ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAIEHGLPLVTRDADF  122


>gi|302036027|ref|YP_003796349.1| putative PilT-like protein [Candidatus Nitrospira defluvii]
 gi|300604091|emb|CBK40423.1| putative PilT-like protein, containing PIN domain [Candidatus 
Nitrospira defluvii]
Length=135

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 34/93 (37%), Positives = 53/93 (57%), Gaps = 0/93 (0%)

Query  33   VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKL  92
            +S + LGELR G LQ +  +   R L  +  + R   L +D   S+ +AL+   L+ A  
Sbjct  33   MSPIVLGELRAGFLQGAKRDRNERELQLFLHSPRIRVLALDAETSDRYALIRVTLKKAGT  92

Query  93   RVPINDSWIAATAVAHGIAILTQDNDYAAMPDV  125
             V +ND WIAA+A+ HG+ +LT D D+  +P +
Sbjct  93   PVAVNDLWIAASAMQHGLPVLTSDRDFQKIPQI  125


>gi|284046267|ref|YP_003396607.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283950488|gb|ADB53232.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=127

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 54/130 (42%), Positives = 72/130 (56%), Gaps = 9/130 (6%)

Query  5    RALADTSVFIGIEATRFD---PDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTY  61
            RALADTSVF+  E+ R     PDR A     VSVVT  EL LGVL+A      ARRL+T 
Sbjct  3    RALADTSVFVAQESGRTLGELPDRIA-----VSVVTAAELELGVLRARDAATRARRLNTL  57

Query  62   QLAQRFEPL-GIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYA  120
               +   PL  ID   +  +A +  +      R+  +D WIAATA+ HG+ ++TQD D+ 
Sbjct  58   ARVRSAYPLLPIDAETASCFAGIADEELGQGRRLRRHDVWIAATALRHGVPVVTQDADFT  117

Query  121  AMPDVEVITI  130
            A   V V+ +
Sbjct  118  AFDLVTVLRV  127


>gi|158312409|ref|YP_001504917.1| PilT domain-containing protein [Frankia sp. EAN1pec]
 gi|158107814|gb|ABW10011.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=127

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 48/133 (37%), Positives = 76/133 (58%), Gaps = 11/133 (8%)

Query  3    VRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ  62
            + R + DTSV +  + T          E  VSV+++ EL+ G+L A  P+A A RL+   
Sbjct  1    MNRGVLDTSVLVATDVTPIP------GELAVSVISIAELQFGILVAKTPQARATRLARLS  54

Query  63   LAQ-RFEPLGIDEAVSEAWALLVSKLRAA--KLRVPINDSWIAATAVAHGIAILTQD-ND  118
              Q RF+PL ID+AV++++  L +++  A  + R    D  IAATA AHG +I T++  D
Sbjct  55   TIQRRFDPLPIDDAVADSYGRLAARVVEAGRQPRARTMDLLIAATAHAHGASIYTRNAAD  114

Query  119  YAAMPD-VEVITI  130
             A + D + ++TI
Sbjct  115  LAGLEDLLRIVTI  127


>gi|269957981|ref|YP_003327770.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269306662|gb|ACZ32212.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM 
15894]
Length=128

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 41/113 (37%), Positives = 63/113 (56%), Gaps = 5/113 (4%)

Query  7    LADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTY-QLAQ  65
            L DT+V I  +  RFD D      +G S+++  EL  G+  A  PEA A R+ T  +L +
Sbjct  3    LLDTNVLIDYDLYRFDAD----VAYGASLLSRAELEFGIRAARTPEAIADRVQTLNRLDE  58

Query  66   RFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDND  118
            RF+ L  D   + ++ ++ S  RA+  R+  ND+ IAA A  HG A++T + D
Sbjct  59   RFDWLPFDLESTRSYGIVASGARASGARLRGNDALIAAQAHRHGAAVMTANPD  111


>gi|86742786|ref|YP_483186.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86569648|gb|ABD13457.1| PilT protein-like [Frankia sp. CcI3]
Length=127

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 74/131 (57%), Gaps = 11/131 (8%)

Query  5    RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLA  64
            R + DTSV +  + T          E  VSV+++ EL+ G+L A  P+A A RL+     
Sbjct  3    RGVLDTSVLVATDVTPLP------GELAVSVISIAELQFGILVARTPQARATRLARLSAI  56

Query  65   Q-RFEPLGIDEAVSEAWALLVSKL--RAAKLRVPINDSWIAATAVAHGIAILTQD-NDYA  120
            Q RF+PL +D+AV++++  L +++     + R    D  IAATA AHG +I T++  D A
Sbjct  57   QRRFDPLPVDDAVADSYGRLAARVVEVGRQPRARTMDLLIAATAHAHGASIYTRNAADLA  116

Query  121  AMPD-VEVITI  130
             + D + ++TI
Sbjct  117  GLEDLLRIVTI  127


>gi|256828120|ref|YP_003156848.1| twitching motility protein PilT [Desulfomicrobium baculatum DSM 
4028]
 gi|256577296|gb|ACU88432.1| PilT protein domain protein [Desulfomicrobium baculatum DSM 4028]
Length=128

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 40/124 (33%), Positives = 63/124 (51%), Gaps = 6/124 (4%)

Query  3    VRRALADTSVFIGIEATRFDPDR---FAGYEW-GVSVVTLGELRLGVLQASGPEAAARRL  58
            + R L DT+++ G  A R D +      G E  G+S ++LGEL  G    +  E   R L
Sbjct  1    MNRILIDTNIYSG--ALRGDQELIRVLRGAEHIGLSAISLGELFSGFKGGNREEENKREL  58

Query  59   STYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDND  118
              +  + R     +DE  +E +  ++ +LR +   +P ND WIAA A  HG A+ TQD  
Sbjct  59   GIFLDSPRVALYPVDEYTAEHYCSILDQLRRSGTPIPTNDIWIAAIAFQHGFALFTQDRQ  118

Query  119  YAAM  122
            ++ +
Sbjct  119  FSKI  122


>gi|336179974|ref|YP_004585349.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334860954|gb|AEH11428.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=127

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 50/131 (39%), Positives = 76/131 (59%), Gaps = 11/131 (8%)

Query  5    RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ-L  63
            R + DTSV +   AT   P    G E  VSV+++ EL+ GVL A  PEA A RL+    L
Sbjct  3    RGILDTSVLV---ATDVAP--IPG-ELAVSVISIAELQFGVLVARTPEARANRLARLSAL  56

Query  64   AQRFEPLGIDEAVSEAWALLVSKLR--AAKLRVPINDSWIAATAVAHGIAILTQD-NDYA  120
             +RF+PL +D+AV++++  L +++     + R    D  IAATA AH  ++ T++  D A
Sbjct  57   QRRFDPLPVDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRNAADLA  116

Query  121  AMPD-VEVITI  130
             + D V ++TI
Sbjct  117  GLEDLVRIVTI  127


>gi|344338644|ref|ZP_08769575.1| PilT protein domain protein [Thiocapsa marina 5811]
 gi|343801226|gb|EGV19169.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=129

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 47/131 (36%), Positives = 71/131 (55%), Gaps = 8/131 (6%)

Query  3    VRRALADTSVFIGIEATRFDPD---RFAGYE-WGVSVVTLGELRLGVLQASGPEAAARR-  57
            +RRAL DT+++    A R +PD   R    +    SVV+LGEL  G  +A   EA  R+ 
Sbjct  1    MRRALIDTNIYS--LAMRGEPDVVDRLQQLDDLAFSVVSLGELLAG-FRAGHREAKNRQE  57

Query  58   LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDN  117
            L  +  + R   L  DE  ++ +A +V  L+ A   +P ND WIAA A  HG+ + T+D 
Sbjct  58   LGRFLDSPRVRLLAADEETADFYAAIVVALKRAGTPIPTNDIWIAAVAQRHGLPVYTRDA  117

Query  118  DYAAMPDVEVI  128
             + A+P + +I
Sbjct  118  HFQAVPGLLLI  128


>gi|256372766|ref|YP_003110590.1| hypothetical protein Afer_2016 [Acidimicrobium ferrooxidans DSM 
10331]
 gi|256009350|gb|ACU54917.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=112

 Score = 60.5 bits (145),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 41/106 (39%), Positives = 59/106 (56%), Gaps = 0/106 (0%)

Query  5    RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLA  64
            RAL DTS F+  E+ R         +  VSVVT+ EL LGVL A+  +  AR  +   + 
Sbjct  2    RALLDTSFFVATESGRPLGAMEGVTDTEVSVVTVAELTLGVLMANDDDRPARVATLSAVE  61

Query  65   QRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGI  110
              ++PL +D  V+  +A + + L A + RVPI D  +AATA+  GI
Sbjct  62   STWDPLPVDAEVARQFARVAAVLHAERRRVPILDVLVAATAMVEGI  107


>gi|332671244|ref|YP_004454252.1| PilT protein domain-containing protein [Cellulomonas fimi ATCC 
484]
 gi|332340282|gb|AEE46865.1| PilT protein domain protein [Cellulomonas fimi ATCC 484]
Length=128

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 38/113 (34%), Positives = 59/113 (53%), Gaps = 5/113 (4%)

Query  7    LADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLST-YQLAQ  65
            L DT+V I +   RF+PD      +G S+++  EL  GV  A   EAAA RL+  + L  
Sbjct  3    LLDTNVLIDLHLYRFEPDE----TYGASILSRAELEFGVNAAPTDEAAAERLARLHDLDA  58

Query  66   RFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDND  118
             F+ L  D+  + ++ ++  + RA   RV   D+ IAA A  H   ++T + D
Sbjct  59   VFDWLEFDKPSTRSYGIVAHRARATGARVRGKDALIAAQAHRHAAPVMTANVD  111


>gi|94265566|ref|ZP_01289311.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|93453895|gb|EAT04250.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=136

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 69/133 (52%), Gaps = 10/133 (7%)

Query  3    VRRALADTSVFIGIEATRFDP-----DRFAGYEWGVSVVTLGELRLGVLQASGPEAAARR  57
            ++R L DT+ ++  +  R  P      R A Y  G++ + LGEL  G  +  G E   RR
Sbjct  1    MKRILLDTNFYVAFK--RNTPLAAEIIRRADY-IGLNTIVLGELLAG-FRCGGRETVNRR  56

Query  58   -LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD  116
             L  +  + R E L IDE  +E +A +   L+     +P ND WIAA+A+ HG+A+ + D
Sbjct  57   ELDQFIDSPRVELLDIDEETTEFYARVFRALKEKGRPIPTNDLWIAASALRHGLALASFD  116

Query  117  NDYAAMPDVEVIT  129
              ++ +  + +I 
Sbjct  117  AHFSYIDGMLLIN  129


>gi|15607805|ref|NP_215179.1| hypothetical protein Rv0665 [Mycobacterium tuberculosis H37Rv]
 gi|15840068|ref|NP_335105.1| hypothetical protein MT0693 [Mycobacterium tuberculosis CDC1551]
 gi|31791849|ref|NP_854342.1| hypothetical protein Mb0684 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=112

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 44/104 (43%), Positives = 60/104 (58%), Gaps = 10/104 (9%)

Query  7    LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63
            L DTSVFI  E   A    P+R A     +SV+T+GEL+LG+L A      +RR  T  L
Sbjct  10   LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGLLNAGDSATRSRRADTLAL  64

Query  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATA  105
            A+  + + + EAV  + A LV+  RAA +R  V + D+ IAATA
Sbjct  65   ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108


>gi|288917699|ref|ZP_06412062.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288350914|gb|EFC85128.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=127

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 45/131 (35%), Positives = 73/131 (56%), Gaps = 11/131 (8%)

Query  5    RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ-L  63
            R + DTSV +   AT   P    G E  +SV+++ EL  GVL A   E  A RL+    L
Sbjct  3    RGILDTSVLV---ATDVAP--IPG-ELAISVISIAELHFGVLVAKTSETRANRLARLSAL  56

Query  64   AQRFEPLGIDEAVSEAWALLVSKLR--AAKLRVPINDSWIAATAVAHGIAILTQD-NDYA  120
             +RF+PL +D+AV++++  L +++     + R    D  IAATA AH  ++ T++  D  
Sbjct  57   QRRFDPLPLDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRNAADLT  116

Query  121  AMPD-VEVITI  130
             + D +E++T+
Sbjct  117  GLEDLIEIVTV  127


>gi|301060111|ref|ZP_07200978.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium 
NaphS2]
 gi|300445623|gb|EFK09521.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium 
NaphS2]
Length=131

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 27/92 (30%), Positives = 48/92 (53%), Gaps = 0/92 (0%)

Query  32   GVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAK  91
            G S +++GEL  G    +        L+ +  + R     IDE  ++ +A +++ LR A 
Sbjct  32   GFSAISIGELFSGFKGGNRESKNREELNLFLDSPRVVVHAIDEGTADFYASILNNLRIAG  91

Query  92   LRVPINDSWIAATAVAHGIAILTQDNDYAAMP  123
              +P ND WIAA A  +G  + ++DN + ++P
Sbjct  92   TPIPTNDIWIAAIAFQYGYQLFSKDNHFKSIP  123


>gi|300780332|ref|ZP_07090188.1| possible nucleic acid-binding protein [Corynebacterium genitalium 
ATCC 33030]
 gi|300534442|gb|EFK55501.1| possible nucleic acid-binding protein [Corynebacterium genitalium 
ATCC 33030]
Length=132

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 40/129 (32%), Positives = 71/129 (56%), Gaps = 8/129 (6%)

Query  5    RALADTSVFIGIEATRFDP--DRFAGY---EWGVSVVTLGELRLGVLQASGPEAAARRLS  59
            R L DT+V+I +E   +    DR +     + GVS V LGEL  G L++  P  A + + 
Sbjct  2    RYLFDTNVWIDLERGSYPHVLDRASSCTRDQVGVSTVVLGELYAGALRSMDPIRARQSID  61

Query  60   TYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILT-QDND  118
            T+     +  +G+DE  +E +A + + L++    +  ND WIAA A+   + ++T  D++
Sbjct  62   TFLAG--WPRIGVDERTAEIYAEIRAALQSQGRVIGPNDLWIAAQALREDVVLVTANDDE  119

Query  119  YAAMPDVEV  127
            ++ +P +EV
Sbjct  120  FSRVPSLEV  128


>gi|298530242|ref|ZP_07017644.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298509616|gb|EFI33520.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
Length=130

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 32/122 (27%), Positives = 63/122 (52%), Gaps = 8/122 (6%)

Query  3    VRRALADTSVFIGIEATRFDPDRFAGY-----EWGVSVVTLGELRLGVLQASGPEAAARR  57
            ++R + DT+++    A + DP+  A Y     + G+S +++GEL  G    +  +     
Sbjct  1    MKRVMIDTNIYS--LALKGDPE-VADYLRKVDKIGISTISIGELLSGFKGGNREDKNREE  57

Query  58   LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDN  117
            L  +  + R     +D   ++ +A ++ KL++A   +P ND WIAA+A  HG  + ++D 
Sbjct  58   LDFFLDSPRVVVHAVDVETADFYASILDKLKSAGTPIPTNDMWIAASAFQHGYKLFSRDR  117

Query  118  DY  119
             +
Sbjct  118  HF  119


>gi|145595623|ref|YP_001159920.1| PilT domain-containing protein [Salinispora tropica CNB-440]
 gi|145304960|gb|ABP55542.1| PilT protein domain protein [Salinispora tropica CNB-440]
Length=127

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 49/130 (38%), Positives = 74/130 (57%), Gaps = 14/130 (10%)

Query  5    RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLA  64
            R + DTS+ I  + T          E  +SV +L EL+ GVL A   +A A RL+     
Sbjct  3    RGILDTSILIATDVTPIPG------ELAISVTSLAELQFGVLAAKTADARAGRLARLSAI  56

Query  65   Q-RFEPLGIDEAVSEAWALLVSKL----RAAKLRVPINDSWIAATAVAHGIAILTQD-ND  118
            Q RF+PL IDEAV++++A L +++    R  + RV   D  IAATA AH  A+ T++ +D
Sbjct  57   QRRFDPLPIDEAVADSYARLAARVVEIGRQPRARV--MDLLIAATAHAHDAAVYTRNADD  114

Query  119  YAAMPDVEVI  128
            +A + D+ +I
Sbjct  115  FAGLEDLVLI  124


>gi|224369081|ref|YP_002603245.1| PIN domain protein (PilT N terminus) [Desulfobacterium autotrophicum 
HRM2]
 gi|223691798|gb|ACN15081.1| PIN domain protein (PilT N terminus) [Desulfobacterium autotrophicum 
HRM2]
Length=130

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 32/124 (26%), Positives = 61/124 (50%), Gaps = 6/124 (4%)

Query  1    VNVRRALADTSVFIGIEATRFDPDRFAGY----EWGVSVVTLGELRLGVLQASGPEAAAR  56
            + V+R L DT+++    A R D +         E G+SV+++GEL  G    +       
Sbjct  1    MEVKRILIDTNIYS--HAMRADHEVTHLLRKVDEIGISVISVGELYSGFKGGTRERGNRD  58

Query  57   RLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD  116
             L  +  + R     +D   ++ ++ +++ L+ A   +P ND WIA+ A  HG+ + T+D
Sbjct  59   ELELFLDSPRVVLYSVDIQTADYYSEIITNLKKAGTPIPTNDIWIASVAFQHGLKLFTKD  118

Query  117  NDYA  120
              ++
Sbjct  119  VHFS  122


>gi|171913870|ref|ZP_02929340.1| PilT protein domain protein [Verrucomicrobium spinosum DSM 4136]
Length=137

 Score = 51.2 bits (121),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 38/110 (35%), Positives = 59/110 (54%), Gaps = 12/110 (10%)

Query  17   EATRFDPD-------RFAGYEWGVSVVTLGELRLGVLQASGPEAAAR-RLSTY--QLAQR  66
            EAT+  PD       R    +  VS + LGEL  G+L  + P+   R RL  +  Q  +R
Sbjct  12   EATKPAPDPQVVAWLRSHESQLVVSPIILGELEYGIL--TLPKGQRRTRLEKWFAQGVRR  69

Query  67   FEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD  116
             + L +D   +  WA L++ L+     +P+ DS IAATA+AHG+ + T++
Sbjct  70   IQSLDVDADTASHWANLLASLKRNGHAMPVKDSLIAATALAHGLTVATRN  119


>gi|158521823|ref|YP_001529693.1| PilT domain-containing protein [Desulfococcus oleovorans Hxd3]
 gi|158510649|gb|ABW67616.1| PilT protein domain protein [Desulfococcus oleovorans Hxd3]
Length=132

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 35/126 (28%), Positives = 64/126 (51%), Gaps = 8/126 (6%)

Query  3    VRRALADTSVFIGIEATRFDPDRFAGY----EWGVSVVTLGELRLGVLQASGPEAAARR-  57
            +R+ L DT+++    A + DP          + G S V++GEL  G  +A   E+  R  
Sbjct  1    MRKVLIDTNIYS--LAMKGDPPTVQVLKKIDQIGFSAVSIGELFSG-FKAGNRESENREE  57

Query  58   LSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDN  117
            L+ +  + R     +DE  ++ +A +++ L+ A   +P ND W+AA A  HG  + ++D 
Sbjct  58   LNIFLDSPRVVIHALDEETADFYATILNNLKKAGTPIPTNDIWLAAVAFQHGYKLYSRDR  117

Query  118  DYAAMP  123
             +  +P
Sbjct  118  HFKLIP  123


>gi|119717550|ref|YP_924515.1| PilT domain-containing protein [Nocardioides sp. JS614]
 gi|119538211|gb|ABL82828.1| PilT protein domain protein [Nocardioides sp. JS614]
Length=143

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 49/130 (38%), Positives = 64/130 (50%), Gaps = 14/130 (10%)

Query  5    RALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASG--PEAAARRLSTYQ  62
            RAL DT++ I  +  R  P+     E  +S VTL EL  G     G  P A A R     
Sbjct  7    RALIDTNIVILRD--RLAPEDLPD-EMSISAVTLAELSAGPHAVVGDDPRARAERGRRTA  63

Query  63   LAQR----FEPLGIDEAVSEAWALLVSKLRAAKLRVPIN---DSWIAATAVAHGIAILTQ  115
            + QR    FEPL  D A +  +  L   +RA   R P     D  IAATAVA+G+A+ T 
Sbjct  64   ILQRTESEFEPLAFDAAAARVYGQLSGAVRAHG-RTPRRRHADLQIAATAVANGLALYTT  122

Query  116  D-NDYAAMPD  124
            + +DYA + D
Sbjct  123  NPDDYAGLDD  132


>gi|91205836|ref|YP_538191.1| toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii 
RML369-C]
 gi|157826803|ref|YP_001495867.1| toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii 
OSU 85-389]
 gi|91069380|gb|ABE05102.1| Toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii 
RML369-C]
 gi|157802107|gb|ABV78830.1| Toxin of toxin-antitoxin (TA) system VapC [Rickettsia bellii 
OSU 85-389]
Length=134

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 32/129 (25%), Positives = 67/129 (52%), Gaps = 7/129 (5%)

Query  7    LADTSVFIGIEATRFDPDRFAGYEWG-VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQ  65
            + DTS+ I +E  +     ++ Y+   ++ + L EL +G+ +        + L+  +  +
Sbjct  4    IVDTSIIIALERGKISTKAWSNYDQAYINPIVLTELLIGIDRVKDENKRGQCLTFIEYVK  63

Query  66   RF---EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDYAA  121
                  P GI+EA    +A ++  L   ++ + ++D  IAATA+ +   ILT +  D+  
Sbjct  64   SLFTLLPFGIEEAY--VYAKIIDNLYKERITIGVHDLLIAATAITYNYPILTLNTKDFKR  121

Query  122  MPDVEVITI  130
            +P++EV+T+
Sbjct  122  IPELEVLTV  130


>gi|148262123|ref|YP_001228829.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146395623|gb|ABQ24256.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=146

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 36/129 (28%), Positives = 62/129 (49%), Gaps = 7/129 (5%)

Query  7    LADTSVFIGIEATRFDPDRFAGYEWG----VSVVTLGELRLGVLQASGPEAAARRLSTYQ  62
            L DT ++I +E     P   A         +S VT+ EL+ G   A   +   +RL+   
Sbjct  4    LIDTCIWIDVERGTLAPADVAAVTGEEPVYLSPVTIAELKFGAENAKTADLRQKRLAALT  63

Query  63   LAQRFEPLGIDEAVSEAWALLVSKLR--AAKLRVPINDSWIAATAVAHGIAILTQD-NDY  119
              +R   L IDE   E +  + +++R    + +  + D W+A+ AV HG   LT +  D+
Sbjct  64   RLKRKPLLMIDETTGEIFGDIAAQIRKHGKQHQYRVQDLWLASQAVQHGFRFLTHNRKDF  123

Query  120  AAMPDVEVI  128
            A +P +++I
Sbjct  124  ADIPGLQLI  132


>gi|67458848|ref|YP_246472.1| toxin of toxin-antitoxin system VapC [Rickettsia felis URRWXCal2]
 gi|67004381|gb|AAY61307.1| Toxin of toxin-antitoxin system VapC [Rickettsia felis URRWXCal2]
Length=134

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 33/129 (26%), Positives = 69/129 (54%), Gaps = 7/129 (5%)

Query  7    LADTSVFIGIEATRFDPDRFAGY-EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQ  65
            + DTS+ I +E  +    +++ Y +  +S + L EL +GV + +      + L+  +  +
Sbjct  4    IIDTSIIIALERGKVSTKQWSHYGQAYISPIVLTELLIGVDRVNNENKRIKCLAFIEYVK  63

Query  66   RF---EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDYAA  121
                  P GI+E  +  +A +++ L   ++ +  +D  IAATA+ HG ++LT +  D+  
Sbjct  64   SLFTILPFGIEEVYT--YARIINDLYKQRITIGTHDMLIAATAITHGYSLLTLNVKDFKR  121

Query  122  MPDVEVITI  130
            +  +EV+T+
Sbjct  122  IQGLEVLTV  130


>gi|329912129|ref|ZP_08275687.1| PilT like protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327545691|gb|EGF30837.1| PilT like protein [Oxalobacteraceae bacterium IMCC9480]
Length=142

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 31/91 (35%), Positives = 48/91 (53%), Gaps = 8/91 (8%)

Query  33   VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPL------GIDEAVSEAWALLVSK  86
            +S ++L ELR G+  A+ PE   R    + L QR  PL        D+  S+++A+L ++
Sbjct  35   LSTISLAELRFGI--AALPEGKRRDTLHFSLEQRVLPLFAGRLLPFDDPASQSYAVLRAR  92

Query  87   LRAAKLRVPINDSWIAATAVAHGIAILTQDN  117
             R A L +   D +IAA A  HG  + T+D 
Sbjct  93   ARTAGLAIAPADGYIAAIAATHGFTVATRDT  123


>gi|116619645|ref|YP_821801.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116222807|gb|ABJ81516.1| PilT protein domain protein [Candidatus Solibacter usitatus Ellin6076]
Length=125

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 28/97 (29%), Positives = 50/97 (52%), Gaps = 2/97 (2%)

Query  30   EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRA  89
            E  + V+ LGE R G+ Q+       + L    L      L +D+A +  +A+L S+L+ 
Sbjct  27   ELALPVIVLGEYRYGIAQSRNRIRYEKWLK--DLVSNCRVLNVDDATAAEYAILRSELKR  84

Query  90   AKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVE  126
                +P ND WIAA A  H + ++++D  +  +P ++
Sbjct  85   GGSPIPANDVWIAALARQHSMPVISRDEHFDFVPKLK  121


>gi|94266187|ref|ZP_01289897.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|94267045|ref|ZP_01290687.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|93452251|gb|EAT02899.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|93453235|gb|EAT03690.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=128

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/90 (29%), Positives = 46/90 (52%), Gaps = 0/90 (0%)

Query  33   VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKL  92
            +S +T+GEL  G             L+ +  + R + + IDE  +E +A ++ +LR    
Sbjct  33   ISAITVGELLSGFRGGQRERENRAELADFLDSPRVKTVSIDEETAEFYAAILDQLRRRGQ  92

Query  93   RVPINDSWIAATAVAHGIAILTQDNDYAAM  122
             +P ND WIAA A+ HG+ + + D  +  +
Sbjct  93   PIPTNDIWIAAAAMQHGLTLYSFDTHFQKI  122


>gi|115526131|ref|YP_783042.1| PilT domain-containing protein [Rhodopseudomonas palustris BisA53]
 gi|115520078|gb|ABJ08062.1| PilT protein domain protein [Rhodopseudomonas palustris BisA53]
Length=147

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (54%), Gaps = 11/95 (11%)

Query  33   VSVVTLGELRLGVLQASGPEAAARRLSTYQ-LAQRFEP------LGIDEAVSEAWALLVS  85
            +SVVTL ELR G+   +    AARR      L+ R  P      L IDE V   W LLV 
Sbjct  37   ISVVTLAELRFGIECVAD---AARRADLNDWLSHRVRPMFEQRVLPIDEDVMLKWRLLVE  93

Query  86   KLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDY  119
            + R A+      D  IAATA+ HG+ ++++D +DY
Sbjct  94   QGRKARQSFSQPDLIIAATALQHGLTVVSRDSSDY  128


>gi|309790890|ref|ZP_07685433.1| PilT protein domain protein [Oscillochloris trichoides DG6]
 gi|308227078|gb|EFO80763.1| PilT protein domain protein [Oscillochloris trichoides DG6]
Length=129

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 25/84 (30%), Positives = 48/84 (58%), Gaps = 2/84 (2%)

Query  36   VTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVP  95
            + LGEL  G L++  PE  ++++   +   +   L ID+  ++ +A++ ++LR     +P
Sbjct  37   IVLGELYYGALRSRKPEENSQQI--LEFGSKNVILAIDDITAQHYAIIKNQLRIKGRPIP  94

Query  96   INDSWIAATAVAHGIAILTQDNDY  119
             ND WIAA A+ + + I T+D  +
Sbjct  95   ENDLWIAAIAMQYQLVIATRDKHF  118


>gi|258591576|emb|CBE67877.1| PilT protein-like [NC10 bacterium 'Dutch sediment']
Length=133

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/87 (30%), Positives = 46/87 (53%), Gaps = 0/87 (0%)

Query  33   VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKL  92
            ++ V +GEL  G ++    +     L  +  + R   + I+E  +E +A+++  L  A  
Sbjct  33   LNAVIVGELLAGFMRGKYRKKNQLELQQFLASPRVSIVDINEETAERYAVILDALWKAGT  92

Query  93   RVPINDSWIAATAVAHGIAILTQDNDY  119
             +P ND WIAA+A+ HG  +L+ D  Y
Sbjct  93   PIPTNDIWIAASAMQHGCRLLSADAHY  119


>gi|301064233|ref|ZP_07204676.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium 
NaphS2]
 gi|300441678|gb|EFK06000.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium 
NaphS2]
Length=127

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 27/88 (31%), Positives = 42/88 (48%), Gaps = 0/88 (0%)

Query  32   GVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAK  91
            G+ V+ LGELR G       +     L  +        L +DE  S  ++  V++LR A 
Sbjct  27   GMPVIVLGELRTGFRSGKYFDRNELELQAFLNNPVVHILDVDEIASSHYSETVAELRLAG  86

Query  92   LRVPINDSWIAATAVAHGIAILTQDNDY  119
              +P ND W+AA A+  G  ++T D  +
Sbjct  87   TPIPTNDIWVAAIAIREGAVVVTYDGHF  114


>gi|148262790|ref|YP_001229496.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146396290|gb|ABQ24923.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=141

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 31/88 (36%), Positives = 50/88 (57%), Gaps = 4/88 (4%)

Query  33   VSVVTLGELRLGVLQASGP--EAAARRLSTYQLAQRF--EPLGIDEAVSEAWALLVSKLR  88
            +SV+TLGEL+ G+ + SG   +   +    + LA+RF    L +D   + AW  L     
Sbjct  36   LSVLTLGELQKGISKLSGSTRKDELQAWVEHDLAERFAGRILDLDLETALAWGTLQGDAE  95

Query  89   AAKLRVPINDSWIAATAVAHGIAILTQD  116
                ++P+ DS IAATA AHG+ ++T++
Sbjct  96   RKGEKLPVMDSLIAATATAHGLIVVTRN  123


>gi|84497437|ref|ZP_00996259.1| hypothetical protein JNB_14623 [Janibacter sp. HTCC2649]
 gi|84382325|gb|EAP98207.1| hypothetical protein JNB_14623 [Janibacter sp. HTCC2649]
Length=140

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 43/127 (34%), Positives = 63/127 (50%), Gaps = 13/127 (10%)

Query  2    NVRRALADTSVFIGIEATRFDPDRFAGY--EWGVSVVTLGELRLGVLQASGPEAAARRLS  59
             V RAL DTSV I        P   A    E  VS ++L EL  G+      E+AAR+L 
Sbjct  11   QVERALLDTSVLID------PPHGLASLATEVVVSTISLAELAHGLHVPDAVESAARQLR  64

Query  60   TYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPIN---DSWIAATAVAHGIAILTQD  116
              ++   FEPL    A +  +  L   +R+A  R P     D  +A+ AV+ G+AILT++
Sbjct  65   YQRILDVFEPLPYSVAAARTYGALADVVRSAG-RSPRQRRFDLLLASVAVSQGVAILTRN  123

Query  117  -NDYAAM  122
              D++ +
Sbjct  124  PRDFSGL  130


>gi|56479529|ref|YP_161118.1| virulence associated protein VapC [Aromatoleum aromaticum EbN1]
 gi|56315572|emb|CAI10217.1| conserved hypothetical protein, similar to virulence associated 
protein VapC [Aromatoleum aromaticum EbN1]
Length=136

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 37/118 (32%), Positives = 57/118 (49%), Gaps = 9/118 (7%)

Query  5    RALADTSVFIGIEATRFDPD------RFAGYEWGVSVVTLGELRLGVLQASGPEAAARRL  58
            R L DT++ I I A    P+      R A  E  +SV+TLGELR G  ++   + A   +
Sbjct  4    RYLLDTNICIYI-AKHNPPEVRQRFARHAASELAMSVITLGELRFGAEKSQARDKALAAI  62

Query  59   STYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD  116
               +   R  PL   E+V E +  + + L+     +  ND W+AA A A G  ++T +
Sbjct  63   QRLEATVRIAPL--TESVGEHYGQIRANLQHKGQPIGNNDLWLAAHARAEGWILVTNN  118


>gi|240171945|ref|ZP_04750604.1| PilT protein-like [Mycobacterium kansasii ATCC 12478]
Length=131

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 43/122 (36%), Positives = 62/122 (51%), Gaps = 10/122 (8%)

Query  7    LADTSVFIGIEATRFDPDRFAGY--EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQ-L  63
            L DTSV I       DP   A    E  +S +T+ EL  G L A+ P  AARR +  Q +
Sbjct  5    LLDTSVVIDWH----DPAIVAALPDEMAISAITVAELAAGPLLATTPIEAARRQARLQEV  60

Query  64   AQRFEPLGIDEAVSEAWALLVSKL--RAAKLRVPINDSWIAATAVAHGIAILTQD-NDYA  120
              R EPL  D A   ++ L+V+ +     K R    D  IAATA A+G+ + +++  D+A
Sbjct  61   ESRLEPLPFDGAAVRSYGLIVAAVVHEGRKPRSRFADMLIAATAHANGLDLYSRNAEDFA  120

Query  121  AM  122
             +
Sbjct  121  GL  122


>gi|304415075|ref|ZP_07395814.1| PIN domain-containing addiction module [Candidatus Regiella insecticola 
LSR1]
 gi|304283071|gb|EFL91495.1| PIN domain-containing addiction module [Candidatus Regiella insecticola 
LSR1]
Length=141

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 32/91 (36%), Positives = 48/91 (53%), Gaps = 8/91 (8%)

Query  33   VSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGI------DEAVSEAWALLVSK  86
            ++ ++L ELR GV  A+ P    + +    L QR  PL +      D AVSEA+A+L  +
Sbjct  35   LAAISLAELRFGV--AALPGGKKKEILHNSLEQRVVPLFMGRILPFDTAVSEAYAMLRVQ  92

Query  87   LRAAKLRVPINDSWIAATAVAHGIAILTQDN  117
             R A   +   D +IAA AV H + + T+D 
Sbjct  93   ARTAGKAIGTADGYIAAIAVVHHLIVATRDT  123


>gi|15892302|ref|NP_360016.1| hypothetical protein RC0379 [Rickettsia conorii str. Malish 7]
 gi|15619444|gb|AAL02917.1| unknown [Rickettsia conorii str. Malish 7]
Length=134

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 32/129 (25%), Positives = 64/129 (50%), Gaps = 7/129 (5%)

Query  7    LADTSVFIGIEATRFDPDRFAGY-EWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQ  65
            + DT++ I +E  +    +++ Y +  +S + L EL +GV +        + L+  +  +
Sbjct  4    IIDTAIIIALEREKVSTKQWSHYGQTYISPIVLTELLIGVYRVKNENKRIKCLAFIEYVK  63

Query  66   RF---EPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQD-NDYAA  121
                  P GI+E  +  +A +   L   ++ +  +D  IAATA+  G  ILT +  D+  
Sbjct  64   SLFTILPFGIEEVYT--YARITHDLYTQRITIGTHDMLIAATAITKGFLILTLNVKDFKR  121

Query  122  MPDVEVITI  130
            +  +EV+T+
Sbjct  122  IQGLEVLTV  130


>gi|326799253|ref|YP_004317072.1| twitching mobility protein PilT [Sphingobacterium sp. 21]
 gi|326550017|gb|ADZ78402.1| PilT protein domain protein [Sphingobacterium sp. 21]
Length=130

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 24/92 (27%), Positives = 49/92 (54%), Gaps = 2/92 (2%)

Query  36   VTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAWALLVSKLRAAKLRVP  95
            V L EL LG  ++S P+    ++ ++    +   +  D   ++A+A++ + L      +P
Sbjct  38   VVLAELLLGAYRSSNPKKHLSQIRSF--LSKCNVIRGDIDTADAYAVIKAALLKKGKPIP  95

Query  96   INDSWIAATAVAHGIAILTQDNDYAAMPDVEV  127
             ND WIA+ A  H + ++T+D  +  + DV++
Sbjct  96   ENDIWIASIAKQHNLTLITKDKHFKEIQDVQI  127



Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127765705240




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40