BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0596c
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607736|ref|NP_215110.1| hypothetical protein Rv0596c [Mycob... 167 6e-40
gi|256372767|ref|YP_003110591.1| hypothetical protein Afer_2017 ... 55.1 4e-06
gi|152964325|ref|YP_001360109.1| hypothetical protein Krad_0355 ... 53.1 1e-05
gi|15607766|ref|NP_215140.1| hypothetical protein Rv0626 [Mycoba... 50.4 8e-05
gi|194320086|pdb|3DBO|A Chain A, Crystal Structure Of A Member O... 50.4 9e-05
gi|41408126|ref|NP_960962.1| hypothetical protein MAP2028c [Myco... 50.4 1e-04
gi|289752668|ref|ZP_06512046.1| conserved hypothetical protein [... 50.1 1e-04
gi|326905152|gb|EGE52085.1| antitoxin [Mycobacterium tuberculosi... 49.7 1e-04
gi|254774871|ref|ZP_05216387.1| hypothetical protein MaviaA2_093... 46.6 0.001
gi|240171944|ref|ZP_04750603.1| prevent-host-death family protei... 46.6 0.001
gi|325002767|ref|ZP_08123879.1| prevent-host-death family protei... 46.6 0.001
gi|254820581|ref|ZP_05225582.1| hypothetical protein MintA_11671... 45.4 0.003
gi|336177396|ref|YP_004582771.1| prevent-host-death family prote... 45.4 0.003
gi|116621869|ref|YP_824025.1| prevent-host-death family protein ... 45.4 0.003
gi|302525773|ref|ZP_07278115.1| predicted protein [Streptomyces ... 45.4 0.003
gi|284046266|ref|YP_003396606.1| prevent-host-death family prote... 45.1 0.003
gi|340358515|ref|ZP_08681032.1| prevent-host-death family antito... 44.3 0.006
gi|325000439|ref|ZP_08121551.1| prevent-host-death family protei... 43.9 0.007
gi|251771911|gb|EES52485.1| conserved hypothetical protein [Lept... 43.1 0.013
gi|256375675|ref|YP_003099335.1| prevent-host-death family prote... 43.1 0.013
gi|84497436|ref|ZP_00996258.1| hypothetical protein JNB_14618 [J... 42.7 0.016
gi|326771645|ref|ZP_08230930.1| toxin-antitoxin system, antitoxi... 42.4 0.022
gi|333990692|ref|YP_004523306.1| prevent-host-death family prote... 42.4 0.022
gi|325067178|ref|ZP_08125851.1| prevent-host-death family protei... 42.4 0.024
gi|45658547|ref|YP_002633.1| hypothetical protein LIC12712 [Lept... 42.0 0.031
gi|308405999|ref|ZP_07669485.1| prevent-host-death family protei... 41.6 0.037
gi|289448540|ref|ZP_06438284.1| conserved hypothetical protein [... 41.6 0.043
gi|15842415|ref|NP_337452.1| hypothetical protein MT2941 [Mycoba... 41.6 0.044
gi|145226166|ref|YP_001136820.1| prevent-host-death family prote... 40.8 0.069
gi|319781819|ref|YP_004141295.1| prevent-host-death family prote... 40.4 0.086
gi|87124593|ref|ZP_01080442.1| hypothetical protein RS9917_13305... 40.4 0.095
gi|312196108|ref|YP_004016169.1| hypothetical protein FraEuI1c_2... 40.0 0.11
gi|340628365|ref|YP_004746817.1| antitoxin [Mycobacterium canett... 40.0 0.12
gi|291446908|ref|ZP_06586298.1| PhdYeFM domain-containing protei... 40.0 0.13
gi|87124252|ref|ZP_01080101.1| hypothetical protein RS9917_11600... 39.7 0.15
gi|296169351|ref|ZP_06850976.1| prevent-host-death family antito... 39.7 0.15
gi|126656024|ref|ZP_01727408.1| hypothetical protein CY0110_0303... 39.7 0.15
gi|239989891|ref|ZP_04710555.1| hypothetical protein SrosN1_2148... 39.7 0.15
gi|88812277|ref|ZP_01127528.1| hypothetical protein NB231_02718 ... 39.7 0.17
gi|15610521|ref|NP_217902.1| hypothetical protein Rv3385c [Mycob... 39.7 0.17
gi|289207392|ref|YP_003459458.1| prevent-host-death family prote... 39.3 0.18
gi|116748845|ref|YP_845532.1| prevent-host-death family protein ... 39.3 0.19
gi|240170729|ref|ZP_04749388.1| hypothetical protein MkanA1_1554... 39.3 0.19
gi|308232445|ref|ZP_07664086.1| antitoxin [Mycobacterium tubercu... 39.3 0.19
gi|15840067|ref|NP_335104.1| hypothetical protein MT0692.1 [Myco... 39.3 0.23
gi|239948327|ref|ZP_04700080.1| antitoxin of toxin-antitoxin sys... 38.9 0.24
gi|37520202|ref|NP_923579.1| hypothetical protein gsl0633 [Gloeo... 38.9 0.24
gi|333989900|ref|YP_004522514.1| prevent-host-death family prote... 38.9 0.25
gi|163794610|ref|ZP_02188581.1| Prevent-host-death protein [alph... 38.9 0.25
gi|15892599|ref|NP_360313.1| hypothetical protein RC0676 [Ricket... 38.9 0.26
>gi|15607736|ref|NP_215110.1| hypothetical protein Rv0596c [Mycobacterium tuberculosis H37Rv]
gi|15839999|ref|NP_335036.1| hypothetical protein MT0626 [Mycobacterium tuberculosis CDC1551]
gi|31791778|ref|NP_854271.1| hypothetical protein Mb0612c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=85
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVR 60
MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVR
Sbjct 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVR 60
Query 61 LGPDTTNLGEELRETLTQTTDDVRW 85
LGPDTTNLGEELRETLTQTTDDVRW
Sbjct 61 LGPDTTNLGEELRETLTQTTDDVRW 85
>gi|256372767|ref|YP_003110591.1| hypothetical protein Afer_2017 [Acidimicrobium ferrooxidans DSM
10331]
gi|256009351|gb|ACU54918.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM
10331]
Length=75
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/76 (48%), Positives = 46/76 (61%), Gaps = 2/76 (2%)
Query 8 RDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTN 67
RDL N +EV+RRV +GE + V D RPVA IVPL+RRR + A E + R P
Sbjct 2 RDLGNTVSEVIRRVESGERLTVTVDRRPVAEIVPLRRRR-TVSATEAVAIASR-HPADRG 59
Query 68 LGEELRETLTQTTDDV 83
L E+R L+ TTDD+
Sbjct 60 LLREVRSLLSDTTDDL 75
>gi|152964325|ref|YP_001360109.1| hypothetical protein Krad_0355 [Kineococcus radiotolerans SRS30216]
gi|151358842|gb|ABS01845.1| hypothetical protein Krad_0355 [Kineococcus radiotolerans SRS30216]
Length=108
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/79 (44%), Positives = 40/79 (51%), Gaps = 6/79 (7%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPL---KRRRQWLPAAEVIGELVR 60
TI RDLRN A +LR + GE V D RPVA I P + W+PA IG L
Sbjct 3 TIRGRDLRNDYARILREIEGGETFTVTSDGRPVASITPYTAPDGPQTWVPADRAIGGLAH 62
Query 61 LG-PDTTNLGEELRETLTQ 78
LG PD + E LR L +
Sbjct 63 LGLPD--DFAETLRRDLDE 79
>gi|15607766|ref|NP_215140.1| hypothetical protein Rv0626 [Mycobacterium tuberculosis H37Rv]
gi|15840027|ref|NP_335064.1| hypothetical protein MT0654 [Mycobacterium tuberculosis CDC1551]
gi|31791808|ref|NP_854301.1| hypothetical protein Mb0642 [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=86
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/55 (48%), Positives = 37/55 (68%), Gaps = 1/55 (1%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK-RRRQWLPAAEVIGEL 58
+ +R+LRN TA VLRRV AGE++ + RPVA + P++ RRR+WL E + L
Sbjct 4 VASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLSRL 58
>gi|194320086|pdb|3DBO|A Chain A, Crystal Structure Of A Member Of The Vapbc Family Of
Toxin- Antitoxin Systems, Vapbc-5, From Mycobacterium Tuberculosis
Length=93
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/59 (45%), Positives = 39/59 (67%), Gaps = 1/59 (1%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK-RRRQWLPAAEVIGEL 58
+ + + +R+LRN TA VLRRV AGE++ + RPVA + P++ RRR+WL E + L
Sbjct 7 LMSEVASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLSRL 65
>gi|41408126|ref|NP_960962.1| hypothetical protein MAP2028c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396481|gb|AAS04345.1| hypothetical protein MAP_2028c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461801|gb|EGO40659.1| prevent-host-death family protein [Mycobacterium avium subsp.
paratuberculosis S397]
Length=86
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (62%), Gaps = 2/80 (2%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK-RRRQWLPAAEVIGELVRLGP 63
+ +R+LRN TA VLRRV GE++ + + R VA + PL+ +RR+WL AE++ L R
Sbjct 4 VASRELRNDTAGVLRRVREGEDVTITINGRAVAMLTPLRPQRRRWLSKAELLSRLRRAQA 63
Query 64 DTTNLGEELRETLTQTTDDV 83
D L ++L TT+D+
Sbjct 64 D-PGLRQDLATLAGDTTEDL 82
>gi|289752668|ref|ZP_06512046.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289693255|gb|EFD60684.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=83
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (48%), Positives = 37/55 (68%), Gaps = 1/55 (1%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK-RRRQWLPAAEVIGEL 58
+ +R+LRN TA VLRRV AGE++ + RPVA + P++ RRR+WL E + L
Sbjct 1 MASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLSRL 55
>gi|326905152|gb|EGE52085.1| antitoxin [Mycobacterium tuberculosis W-148]
Length=86
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (48%), Positives = 37/55 (68%), Gaps = 1/55 (1%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK-RRRQWLPAAEVIGEL 58
+ +R+LRN TA VLRRV AGE++ + RPVA + P++ RRR+WL E + L
Sbjct 4 VASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLFRL 58
>gi|254774871|ref|ZP_05216387.1| hypothetical protein MaviaA2_09390 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=86
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/80 (39%), Positives = 47/80 (59%), Gaps = 2/80 (2%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK-RRRQWLPAAEVIGELVRLGP 63
+ +R+LRN TA VLRRV GE++ + + R VA + L +RR+WL AE++ L R
Sbjct 4 VASRELRNDTAGVLRRVREGEDVTITVNGRAVAMLTALGPQRRRWLSKAELLSRLRRAQA 63
Query 64 DTTNLGEELRETLTQTTDDV 83
D L ++L TT+D+
Sbjct 64 D-PGLRQDLATLAGDTTEDL 82
>gi|240171944|ref|ZP_04750603.1| prevent-host-death family protein [Mycobacterium kansasii ATCC
12478]
Length=82
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (48%), Positives = 37/55 (68%), Gaps = 1/55 (1%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKR-RRQWLPAAEV 54
M+ TIP RDLRN+ A+V+ VAAGE V ++ PVA + PL+ RR+++ EV
Sbjct 1 MAKTIPQRDLRNNNAKVIDEVAAGETFVVTRNGEPVAELRPLRAVRRRFITRDEV 55
>gi|325002767|ref|ZP_08123879.1| prevent-host-death family protein [Pseudonocardia sp. P1]
Length=97
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (44%), Positives = 37/58 (64%), Gaps = 3/58 (5%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKR---RRQWLPAAEVI 55
MS I +LRN A V+RRVA GE V + RPVA +VP +R +R+++P +E++
Sbjct 1 MSQEIRQSELRNDNASVMRRVAEGESFVVTVNGRPVADVVPHQRGTGKRRFVPVSELV 58
>gi|254820581|ref|ZP_05225582.1| hypothetical protein MintA_11671 [Mycobacterium intracellulare
ATCC 13950]
Length=86
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/82 (40%), Positives = 48/82 (59%), Gaps = 6/82 (7%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVA---RIVPLKRRRQWLPAAEVIGELVRL 61
+ +R+LRN TA VLRRV GE++ + RPVA +VP +RR+WL E++ L R+
Sbjct 4 VASRELRNDTAGVLRRVRDGEDVTITVSGRPVAVLTAVVP--QRRRWLSKTELLSRLPRV 61
Query 62 GPDTTNLGEELRETLTQTTDDV 83
D L E+L TT+++
Sbjct 62 QAD-PGLREDLHALAGDTTEEL 82
>gi|336177396|ref|YP_004582771.1| prevent-host-death family protein [Frankia symbiont of Datisca
glomerata]
gi|334858376|gb|AEH08850.1| prevent-host-death family protein [Frankia symbiont of Datisca
glomerata]
Length=87
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (40%), Positives = 36/63 (58%), Gaps = 1/63 (1%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVR 60
+S I R+LRN + +LR V G V ++ PVA +VPL RRR ++PAA+V+
Sbjct 5 VSREITQRELRNDSGGILRAVEQGSTFVVTRNGSPVAELVPL-RRRTFVPAAQVLAMFAH 63
Query 61 LGP 63
P
Sbjct 64 EAP 66
>gi|116621869|ref|YP_824025.1| prevent-host-death family protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116225031|gb|ABJ83740.1| prevent-host-death family protein [Candidatus Solibacter usitatus
Ellin6076]
Length=73
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 39/64 (61%), Gaps = 2/64 (3%)
Query 11 RNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGE 70
+ H +E++ + + GEEI V KDNRPVA+IVPL+ ++ + G+++ L PD E
Sbjct 10 KAHFSELIEKASLGEEITVTKDNRPVAKIVPLRPLKRQPGTGK--GKILFLSPDFDAPLE 67
Query 71 ELRE 74
+ E
Sbjct 68 DFAE 71
>gi|302525773|ref|ZP_07278115.1| predicted protein [Streptomyces sp. AA4]
gi|302434668|gb|EFL06484.1| predicted protein [Streptomyces sp. AA4]
Length=95
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/43 (49%), Positives = 30/43 (70%), Gaps = 0/43 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK 43
M + I R+LRN AE++RRVAAGE V ++ +PVA +VP +
Sbjct 1 MGSAIGQRELRNDNAEIMRRVAAGESFVVTRNGKPVADLVPHR 43
>gi|284046266|ref|YP_003396606.1| prevent-host-death family protein [Conexibacter woesei DSM 14684]
gi|283950487|gb|ADB53231.1| prevent-host-death family protein [Conexibacter woesei DSM 14684]
Length=83
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/83 (38%), Positives = 47/83 (57%), Gaps = 2/83 (2%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVP-LKRRRQWLPAAEVIGELV 59
M+ + R+LRNHTA+V+ V GE + + + VA IVP ++RR W+PA+ V+ E+V
Sbjct 1 MAKEVSVRELRNHTADVVAAVRGGETMTLTVNRERVADIVPHVERRDPWVPAS-VLREIV 59
Query 60 RLGPDTTNLGEELRETLTQTTDD 82
R P L +L + DD
Sbjct 60 REAPADRGLLADLADVRGALLDD 82
>gi|340358515|ref|ZP_08681032.1| prevent-host-death family antitoxin [Actinomyces sp. oral taxon
448 str. F0400]
gi|339886365|gb|EGQ76023.1| prevent-host-death family antitoxin [Actinomyces sp. oral taxon
448 str. F0400]
Length=96
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/49 (47%), Positives = 30/49 (62%), Gaps = 0/49 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWL 49
+S TI R+LRN +A +LRRV AGE EV + PVA + P+ R L
Sbjct 11 VSTTITHRELRNSSASILRRVQAGETFEVTNNGEPVALLSPMGGERLAL 59
>gi|325000439|ref|ZP_08121551.1| prevent-host-death family protein [Pseudonocardia sp. P1]
Length=88
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/54 (47%), Positives = 33/54 (62%), Gaps = 1/54 (1%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEV 54
M TI LRN A V++RVA+GE V + RPVA +VP +RR +PA E+
Sbjct 1 MGETIKQSQLRNDNAAVMKRVASGESFTVTVNGRPVADLVP-HQRRTVVPAEEM 53
>gi|251771911|gb|EES52485.1| conserved hypothetical protein [Leptospirillum ferrodiazotrophum]
Length=75
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/66 (31%), Positives = 35/66 (54%), Gaps = 0/66 (0%)
Query 11 RNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGE 70
+ H +E++RR A GEEI + KDN P+ R+VP++ +V + PD E
Sbjct 10 KAHFSEIVRRAARGEEIVIAKDNHPLVRLVPVQGNEGDRVPGSAKHHIVSVSPDFAGTLE 69
Query 71 ELRETL 76
+ ++ +
Sbjct 70 DFKDYM 75
>gi|256375675|ref|YP_003099335.1| prevent-host-death family protein [Actinosynnema mirum DSM 43827]
gi|255919978|gb|ACU35489.1| prevent-host-death family protein [Actinosynnema mirum DSM 43827]
Length=94
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/39 (54%), Positives = 28/39 (72%), Gaps = 0/39 (0%)
Query 3 ATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVP 41
A+I R+LRN AE++RRV AGE V ++ RPVA +VP
Sbjct 4 ASIGQRELRNDNAEIMRRVEAGESFVVTRNGRPVADLVP 42
>gi|84497436|ref|ZP_00996258.1| hypothetical protein JNB_14618 [Janibacter sp. HTCC2649]
gi|84382324|gb|EAP98206.1| hypothetical protein JNB_14618 [Janibacter sp. HTCC2649]
Length=96
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/83 (37%), Positives = 43/83 (52%), Gaps = 5/83 (6%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVP-----LKRRRQWLPAAEVIGELV 59
I R LRN + E+LRRV AGE + V + PVA +VP +K R+W+PAA+ +
Sbjct 4 ISQRQLRNDSGEMLRRVEAGEVLVVTRRGVPVADLVPHREPVVKGPRRWVPAADFHFAVA 63
Query 60 RLGPDTTNLGEELRETLTQTTDD 82
L P + E ++ L D
Sbjct 64 DLPPWSVAEFETEQKQLDDAVSD 86
>gi|326771645|ref|ZP_08230930.1| toxin-antitoxin system, antitoxin component, PHD family [Actinomyces
viscosus C505]
gi|326637778|gb|EGE38679.1| toxin-antitoxin system, antitoxin component, PHD family [Actinomyces
viscosus C505]
Length=88
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/43 (47%), Positives = 28/43 (66%), Gaps = 0/43 (0%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRR 46
TI R+LRN++A +L RV AGE E+ + PVA + P+ R R
Sbjct 6 TIMHRELRNNSAAILHRVQAGETFEITNNGEPVAILSPISRDR 48
>gi|333990692|ref|YP_004523306.1| prevent-host-death family protein [Mycobacterium sp. JDM601]
gi|333486660|gb|AEF36052.1| prevent-host-death family protein [Mycobacterium sp. JDM601]
Length=76
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (54%), Gaps = 10/60 (16%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK----------RRRQWLPAAEV 54
+ RDLRNH EVLRRV GE I V +D VA + PL RRR+ LP +V
Sbjct 2 VTVRDLRNHGGEVLRRVERGERIVVTRDGAAVAELCPLPRPSVSPTELIRRRRNLPRVDV 61
>gi|325067178|ref|ZP_08125851.1| prevent-host-death family protein [Actinomyces oris K20]
Length=88
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/43 (47%), Positives = 28/43 (66%), Gaps = 0/43 (0%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRR 46
TI R+LRN++A +L RV AGE E+ + PVA + P+ R R
Sbjct 6 TIMHRELRNNSAAILHRVQAGETFEITNNGEPVAILSPISRDR 48
>gi|45658547|ref|YP_002633.1| hypothetical protein LIC12712 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601790|gb|AAS71270.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length=77
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/46 (35%), Positives = 30/46 (66%), Gaps = 2/46 (4%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVL--KDNRPVARIVPLKRRRQ 47
+ P +L++H +EVL V GE + +L K +P+A I+P+K +++
Sbjct 3 SYPVGELKSHFSEVLESVKNGESVGILYGKGKKPIAMIIPMKSKKE 48
>gi|308405999|ref|ZP_07669485.1| prevent-host-death family protein [Mycobacterium tuberculosis
SUMu012]
gi|308364890|gb|EFP53741.1| prevent-host-death family protein [Mycobacterium tuberculosis
SUMu012]
Length=49
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/37 (52%), Positives = 28/37 (76%), Gaps = 0/37 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVA 37
M A + +R+LRN+TA +LRRV AGE+I + + +PVA
Sbjct 1 MPAEVASRELRNNTAGLLRRVQAGEDITITANGKPVA 37
>gi|289448540|ref|ZP_06438284.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289421498|gb|EFD18699.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=63
Score = 41.6 bits (96), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/37 (52%), Positives = 28/37 (76%), Gaps = 0/37 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVA 37
M A + +R+LRN+TA +LRRV AGE+I + + +PVA
Sbjct 15 MPAEVASRELRNNTAGLLRRVQAGEDITITANGKPVA 51
>gi|15842415|ref|NP_337452.1| hypothetical protein MT2941 [Mycobacterium tuberculosis CDC1551]
gi|148662717|ref|YP_001284240.1| hypothetical protein MRA_2898 [Mycobacterium tuberculosis H37Ra]
gi|167969503|ref|ZP_02551780.1| hypothetical protein MtubH3_16341 [Mycobacterium tuberculosis
H37Ra]
21 more sequence titles
Length=63
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/37 (52%), Positives = 28/37 (76%), Gaps = 0/37 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVA 37
M A + +R+LRN+TA +LRRV AGE+I + + +PVA
Sbjct 15 MPAEVASRELRNNTAGLLRRVQAGEDITITANGKPVA 51
>gi|145226166|ref|YP_001136820.1| prevent-host-death family protein [Mycobacterium gilvum PYR-GCK]
gi|145218629|gb|ABP48032.1| prevent-host-death family protein [Mycobacterium gilvum PYR-GCK]
Length=82
Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/55 (42%), Positives = 34/55 (62%), Gaps = 2/55 (3%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRR--RQWLPAAEVIG 56
T+ R+LR + ++++RRV GEEI + RP AR+VP R R+W AE+ G
Sbjct 3 TVGLRELRQNASDLIRRVEEGEEITITVAGRPGARLVPATPRAWRRWSDVAELFG 57
>gi|319781819|ref|YP_004141295.1| prevent-host-death family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167707|gb|ADV11245.1| prevent-host-death family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length=81
Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/44 (39%), Positives = 29/44 (66%), Gaps = 0/44 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKR 44
M+ T+ RD + H + ++RR A GE + K +P+ARIVP+++
Sbjct 1 MTQTVNIRDAKAHLSRLVRRAAQGESFVIAKAGKPLARIVPIEQ 44
>gi|87124593|ref|ZP_01080442.1| hypothetical protein RS9917_13305 [Synechococcus sp. RS9917]
gi|86168165|gb|EAQ69423.1| hypothetical protein RS9917_13305 [Synechococcus sp. RS9917]
Length=87
Score = 40.4 bits (93), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/36 (53%), Positives = 25/36 (70%), Gaps = 0/36 (0%)
Query 8 RDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK 43
RDL+ H +E L RV AGEE+EV +P+ARI +K
Sbjct 2 RDLKTHLSEWLGRVQAGEEVEVTSHRKPIARITAVK 37
>gi|312196108|ref|YP_004016169.1| hypothetical protein FraEuI1c_2260 [Frankia sp. EuI1c]
gi|311227444|gb|ADP80299.1| hypothetical protein FraEuI1c_2260 [Frankia sp. EuI1c]
Length=90
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (33%), Positives = 33/59 (56%), Gaps = 1/59 (1%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGP 63
I R+LR+ ++LR V +GE V +D P+A + P RR++++P E++ P
Sbjct 12 ITQRELRDDAGDILRAVESGETFVVTRDGYPIAELTP-ARRQKFVPMDEILATFANDPP 69
>gi|340628365|ref|YP_004746817.1| antitoxin [Mycobacterium canettii CIPT 140010059]
gi|340006555|emb|CCC45741.1| antitoxin [Mycobacterium canettii CIPT 140010059]
Length=92
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/42 (46%), Positives = 28/42 (67%), Gaps = 0/42 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPL 42
M++++ R LR +E+LRRV AGE IE+ RPVA + P+
Sbjct 1 MASSVGVRALRQRASELLRRVEAGETIEITDRGRPVALLSPM 42
>gi|291446908|ref|ZP_06586298.1| PhdYeFM domain-containing protein [Streptomyces roseosporus NRRL
15998]
gi|291349855|gb|EFE76759.1| PhdYeFM domain-containing protein [Streptomyces roseosporus NRRL
15998]
Length=150
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/58 (38%), Positives = 34/58 (59%), Gaps = 1/58 (1%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRL 61
TI R+ RN++AEV+ V GE + ++ VA + P+ R+RQ L A E++ RL
Sbjct 61 TITQREFRNNSAEVMDAVEGGETFHITRNGIEVAELRPISRKRQ-LSAEELVARHRRL 117
>gi|87124252|ref|ZP_01080101.1| hypothetical protein RS9917_11600 [Synechococcus sp. RS9917]
gi|86167824|gb|EAQ69082.1| hypothetical protein RS9917_11600 [Synechococcus sp. RS9917]
Length=85
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 26/37 (71%), Gaps = 0/37 (0%)
Query 8 RDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKR 44
RDL+ H +E L RV AGE +EV +P+ARI+ +K+
Sbjct 2 RDLKTHLSEWLGRVQAGEVVEVTSHRKPIARIMTVKQ 38
>gi|296169351|ref|ZP_06850976.1| prevent-host-death family antitoxin [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895973|gb|EFG75663.1| prevent-host-death family antitoxin [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=91
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (68%), Gaps = 0/40 (0%)
Query 3 ATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPL 42
+T+ R+LR +E+LRRV AGE IE+ RP+A + P+
Sbjct 2 STVGVRELRQRASELLRRVEAGETIEITDRGRPIALLSPM 41
>gi|126656024|ref|ZP_01727408.1| hypothetical protein CY0110_03039 [Cyanothece sp. CCY0110]
gi|126622304|gb|EAZ93010.1| hypothetical protein CY0110_03039 [Cyanothece sp. CCY0110]
Length=70
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/36 (45%), Positives = 27/36 (75%), Gaps = 0/36 (0%)
Query 11 RNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRR 46
+++ +++L GEEI + KDN+PVA+I P+KR+R
Sbjct 10 KSNLSKLLDLAIKGEEIVITKDNKPVAKISPMKRKR 45
>gi|239989891|ref|ZP_04710555.1| hypothetical protein SrosN1_21485 [Streptomyces roseosporus NRRL
11379]
Length=92
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/58 (38%), Positives = 34/58 (59%), Gaps = 1/58 (1%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRL 61
TI R+ RN++AEV+ V GE + ++ VA + P+ R+RQ L A E++ RL
Sbjct 3 TITQREFRNNSAEVMDAVEGGETFHITRNGIEVAELRPISRKRQ-LSAEELVARHRRL 59
>gi|88812277|ref|ZP_01127528.1| hypothetical protein NB231_02718 [Nitrococcus mobilis Nb-231]
gi|88790528|gb|EAR21644.1| hypothetical protein NB231_02718 [Nitrococcus mobilis Nb-231]
Length=93
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 25/37 (68%), Gaps = 0/37 (0%)
Query 5 IPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVP 41
+ R+L+N +E LRR AGEEI + RPVAR++P
Sbjct 3 VSVRELKNRLSEYLRRTQAGEEITIASRGRPVARLLP 39
>gi|15610521|ref|NP_217902.1| hypothetical protein Rv3385c [Mycobacterium tuberculosis H37Rv]
gi|15842978|ref|NP_338015.1| hypothetical protein MT3493 [Mycobacterium tuberculosis CDC1551]
gi|31794565|ref|NP_857058.1| hypothetical protein Mb3417c [Mycobacterium bovis AF2122/97]
50 more sequence titles
Length=102
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/71 (40%), Positives = 39/71 (55%), Gaps = 5/71 (7%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVI--GELVRL 61
++ R LR +E+LRRV AGE IE+ RPVA + PL Q P +++ GE+ R
Sbjct 14 SVGVRALRQRASELLRRVEAGETIEITDRGRPVALLSPLP---QGGPYEQLLASGEIERA 70
Query 62 GPDTTNLGEEL 72
D +L E L
Sbjct 71 TLDVVDLPEPL 81
>gi|289207392|ref|YP_003459458.1| prevent-host-death family protein [Thioalkalivibrio sp. K90mix]
gi|288943023|gb|ADC70722.1| prevent-host-death family protein [Thioalkalivibrio sp. K90mix]
Length=76
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/43 (42%), Positives = 27/43 (63%), Gaps = 0/43 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK 43
MS T+ + + H + +L+R GEEI + K RP AR+VPL+
Sbjct 1 MSTTVNVHEAKTHLSRLLKRAHDGEEIILAKSGRPYARLVPLE 43
>gi|116748845|ref|YP_845532.1| prevent-host-death family protein [Syntrophobacter fumaroxidans
MPOB]
gi|116697909|gb|ABK17097.1| prevent-host-death family protein [Syntrophobacter fumaroxidans
MPOB]
Length=79
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/58 (35%), Positives = 34/58 (59%), Gaps = 1/58 (1%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRL 61
T+ A + + H ++L+RVA GE+I + K PVA + P ++ +P E+I +L R
Sbjct 3 TVGAYEAKTHLTQLLKRVAKGEKITITKHGIPVATLQPADSSKK-MPVREIIDQLKRF 59
>gi|240170729|ref|ZP_04749388.1| hypothetical protein MkanA1_15547 [Mycobacterium kansasii ATCC
12478]
Length=99
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/49 (45%), Positives = 31/49 (64%), Gaps = 6/49 (12%)
Query 1 MSATIPA------RDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLK 43
MSAT+ A R+LR H + L RV AGEE+ + + R VAR+VP++
Sbjct 1 MSATMGAVEAIGVRELRQHASRYLARVEAGEELGITNNGRLVARLVPVQ 49
>gi|308232445|ref|ZP_07664086.1| antitoxin [Mycobacterium tuberculosis SUMu001]
gi|308370248|ref|ZP_07666900.1| antitoxin [Mycobacterium tuberculosis SUMu002]
gi|308371328|ref|ZP_07667137.1| antitoxin [Mycobacterium tuberculosis SUMu003]
22 more sequence titles
Length=91
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/71 (40%), Positives = 39/71 (55%), Gaps = 5/71 (7%)
Query 4 TIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVI--GELVRL 61
++ R LR +E+LRRV AGE IE+ RPVA + PL Q P +++ GE+ R
Sbjct 3 SVGVRALRQRASELLRRVEAGETIEITDRGRPVALLSPLP---QGGPYEQLLASGEIERA 59
Query 62 GPDTTNLGEEL 72
D +L E L
Sbjct 60 TLDVVDLPEPL 70
>gi|15840067|ref|NP_335104.1| hypothetical protein MT0692.1 [Mycobacterium tuberculosis CDC1551]
gi|167967490|ref|ZP_02549767.1| hypothetical protein MtubH3_05422 [Mycobacterium tuberculosis
H37Ra]
gi|254549624|ref|ZP_05140071.1| hypothetical protein Mtube_04035 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294992937|ref|ZP_06798628.1| hypothetical protein Mtub2_00120 [Mycobacterium tuberculosis
210]
gi|297633162|ref|ZP_06950942.1| hypothetical protein MtubK4_03510 [Mycobacterium tuberculosis
KZN 4207]
gi|297730142|ref|ZP_06959260.1| hypothetical protein MtubKR_03565 [Mycobacterium tuberculosis
KZN R506]
gi|313657469|ref|ZP_07814349.1| hypothetical protein MtubKV_03555 [Mycobacterium tuberculosis
KZN V2475]
gi|13880214|gb|AAK44918.1| hypothetical protein MT0692.1 [Mycobacterium tuberculosis CDC1551]
Length=108
Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/42 (48%), Positives = 27/42 (65%), Gaps = 0/42 (0%)
Query 8 RDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWL 49
RDLRN T++V+ V AG + + PVA IVP +RR +WL
Sbjct 6 RDLRNRTSQVVDAVKAGVPVTLTVHGEPVADIVPHRRRIRWL 47
>gi|239948327|ref|ZP_04700080.1| antitoxin of toxin-antitoxin system Phd [Rickettsia endosymbiont
of Ixodes scapularis]
gi|239922603|gb|EER22627.1| antitoxin of toxin-antitoxin system Phd [Rickettsia endosymbiont
of Ixodes scapularis]
Length=72
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/60 (29%), Positives = 33/60 (55%), Gaps = 0/60 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVR 60
+S I + + H + +++RV GE+I + K N PVA+I+P+ ++ + E E +
Sbjct 5 LSNQINLLEAKTHFSNLIQRVQDGEQITICKHNTPVAKIIPITQKPKMDNIVEKFAEFSK 64
>gi|37520202|ref|NP_923579.1| hypothetical protein gsl0633 [Gloeobacter violaceus PCC 7421]
gi|35211195|dbj|BAC88574.1| gsl0633 [Gloeobacter violaceus PCC 7421]
Length=80
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/42 (43%), Positives = 27/42 (65%), Gaps = 0/42 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPL 42
M T+ A + + H A +L RVA GE+I + + PVAR+VP+
Sbjct 1 MIFTVGAFEAKTHFANLLERVARGEQIVITRHGTPVARLVPI 42
>gi|333989900|ref|YP_004522514.1| prevent-host-death family protein [Mycobacterium sp. JDM601]
gi|333485868|gb|AEF35260.1| prevent-host-death family protein [Mycobacterium sp. JDM601]
Length=82
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/58 (38%), Positives = 33/58 (57%), Gaps = 0/58 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGEL 58
M+ TIP R+LRN A+V+ V GE V ++ PVA + P++ R+ A + I L
Sbjct 1 MARTIPQRELRNDNAKVMDAVVGGETFIVTRNGEPVAELRPIRVTRRTFIARDEIAAL 58
>gi|163794610|ref|ZP_02188581.1| Prevent-host-death protein [alpha proteobacterium BAL199]
gi|159180334|gb|EDP64857.1| Prevent-host-death protein [alpha proteobacterium BAL199]
Length=78
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/75 (30%), Positives = 44/75 (59%), Gaps = 3/75 (4%)
Query 3 ATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKR-RRQWLPAAEVIGELVRL 61
A + + + H + ++ RVAAGEEI + K+ P+AR+VP+++ + + +PA +G++ +
Sbjct 2 AQVNLYEAKTHLSSLVDRVAAGEEIVIAKNGTPMARLVPVEKPKARRVPAN--VGKITYI 59
Query 62 GPDTTNLGEELRETL 76
D + E+ E
Sbjct 60 ADDFDEVDPEIVELF 74
>gi|15892599|ref|NP_360313.1| hypothetical protein RC0676 [Rickettsia conorii str. Malish 7]
gi|34580421|ref|ZP_00141901.1| hypothetical protein [Rickettsia sibirica 246]
gi|238650242|ref|YP_002916093.1| hypothetical protein RPR_00230 [Rickettsia peacockii str. Rustic]
gi|15619765|gb|AAL03214.1| unknown [Rickettsia conorii str. Malish 7]
gi|28261806|gb|EAA25310.1| unknown [Rickettsia sibirica 246]
gi|238624340|gb|ACR47046.1| hypothetical protein RPR_00230 [Rickettsia peacockii str. Rustic]
Length=84
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/42 (43%), Positives = 27/42 (65%), Gaps = 0/42 (0%)
Query 1 MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPL 42
M TI A D + H +++L RV+ GEEI + K + A+IVP+
Sbjct 1 MKNTITAFDAKTHFSKLLDRVSKGEEILITKRGKAAAKIVPI 42
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131466506940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40