BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0598c
Length=137
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607738|ref|NP_215112.1| hypothetical protein Rv0598c [Mycob... 264 4e-69
gi|306806415|ref|ZP_07443083.1| toxin [Mycobacterium tuberculosi... 252 1e-65
gi|86741978|ref|YP_482378.1| PilT protein-like protein [Frankia ... 154 4e-36
gi|158314179|ref|YP_001506687.1| PilT domain-containing protein ... 154 4e-36
gi|288922493|ref|ZP_06416677.1| PilT protein domain protein [Fra... 150 6e-35
gi|111219702|ref|YP_710496.1| hypothetical protein FRAAL0206 [Fr... 147 4e-34
gi|86741255|ref|YP_481655.1| PilT protein-like protein [Frankia ... 138 2e-31
gi|336119319|ref|YP_004574096.1| hypothetical protein MLP_36790 ... 137 4e-31
gi|315446131|ref|YP_004079010.1| PIN domain-containing protein [... 130 8e-29
gi|108797802|ref|YP_637999.1| PilT protein-like protein [Mycobac... 120 6e-26
gi|126433455|ref|YP_001069146.1| PilT domain-containing protein ... 116 1e-24
gi|306818933|ref|ZP_07452654.1| PilT protein family protein [Mob... 115 2e-24
gi|227875625|ref|ZP_03993764.1| PilT protein family protein [Mob... 114 3e-24
gi|269977131|ref|ZP_06184104.1| toxin-antitoxin system, toxin co... 113 1e-23
gi|336119588|ref|YP_004574365.1| hypothetical protein MLP_39480 ... 84.0 6e-15
gi|336178805|ref|YP_004584180.1| hypothetical protein FsymDg_293... 82.0 2e-14
gi|333989910|ref|YP_004522524.1| hypothetical protein JDM601_127... 81.3 5e-14
gi|31793780|ref|NP_856273.1| hypothetical protein Mb2627 [Mycoba... 76.3 1e-12
gi|340627613|ref|YP_004746065.1| hypothetical protein MCAN_26381... 75.5 2e-12
gi|15609733|ref|NP_217112.1| hypothetical protein Rv2596 [Mycoba... 72.8 1e-11
gi|289762769|ref|ZP_06522147.1| conserved hypothetical protein [... 72.4 2e-11
gi|15842135|ref|NP_337172.1| hypothetical protein MT2672 [Mycoba... 67.8 5e-10
gi|240169440|ref|ZP_04748099.1| hypothetical protein MkanA1_0901... 63.2 1e-08
gi|334120341|ref|ZP_08494422.1| PilT protein domain protein [Mic... 61.2 5e-08
gi|37521277|ref|NP_924654.1| hypothetical protein gll1708 [Gloeo... 59.3 2e-07
gi|239904705|ref|YP_002951443.1| hypothetical protein DMR_00660 ... 55.5 3e-06
gi|297567633|ref|YP_003686604.1| hypothetical protein Mesil_3282... 54.7 5e-06
gi|153871622|ref|ZP_02000746.1| PilT-like protein [Beggiatoa sp.... 52.4 2e-05
gi|303246740|ref|ZP_07333017.1| PilT protein domain protein [Des... 52.4 2e-05
gi|220908830|ref|YP_002484141.1| PilT protein domain-containing ... 51.6 4e-05
gi|299136185|ref|ZP_07029369.1| PilT protein domain protein [Aci... 50.8 6e-05
gi|166368214|ref|YP_001660487.1| PilT protein-like protein [Micr... 49.7 2e-04
gi|86740896|ref|YP_481296.1| hypothetical protein Francci3_2198 ... 48.5 3e-04
gi|37523217|ref|NP_926594.1| hypothetical protein gll3648 [Gloeo... 36.6 1.3
gi|294506057|ref|YP_003570115.1| hypothetical protein SRM_00242 ... 35.8 2.0
gi|240170675|ref|ZP_04749334.1| PIN domain protein family protei... 35.8 2.2
gi|325283833|ref|YP_004256374.1| PilT protein domain-containing ... 35.8 2.4
gi|197117645|ref|YP_002138072.1| trans-isoprenyl diphosphate syn... 35.0 3.5
gi|317030801|ref|XP_001392262.2| hypothetical protein ANI_1_1678... 33.5 9.3
gi|118471205|ref|YP_885683.1| xanthine/uracil permeases family p... 33.5 10.0
>gi|15607738|ref|NP_215112.1| hypothetical protein Rv0598c [Mycobacterium tuberculosis H37Rv]
gi|15840001|ref|NP_335038.1| hypothetical protein MT0628 [Mycobacterium tuberculosis CDC1551]
gi|31791780|ref|NP_854273.1| hypothetical protein Mb0614c [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=137
Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 VKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAP 60
+KPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAP
Sbjct 1 MKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAP 60
Query 61 MDAARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDA 120
MDAARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDA
Sbjct 61 MDAARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDA 120
Query 121 RAKDTYEKIGVHVVVAA 137
RAKDTYEKIGVHVVVAA
Sbjct 121 RAKDTYEKIGVHVVVAA 137
>gi|306806415|ref|ZP_07443083.1| toxin [Mycobacterium tuberculosis SUMu007]
gi|308347066|gb|EFP35917.1| toxin [Mycobacterium tuberculosis SUMu007]
Length=131
Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/131 (99%), Positives = 131/131 (100%), Gaps = 0/131 (0%)
Query 7 VDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARL 66
+DTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARL
Sbjct 1 MDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARL 60
Query 67 LTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTY 126
LTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTY
Sbjct 61 LTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTY 120
Query 127 EKIGVHVVVAA 137
EKIGVHVVVAA
Sbjct 121 EKIGVHVVVAA 131
>gi|86741978|ref|YP_482378.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86568840|gb|ABD12649.1| PilT protein-like [Frankia sp. CcI3]
Length=135
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/133 (63%), Positives = 96/133 (73%), Gaps = 0/133 (0%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+AVDTSVA+PLLVR+HT HA VV WW RE AL G+AL ETYSVLTR+P D RL+ DAA
Sbjct 3 IAVDTSVAVPLLVRSHTHHADVVQWWGGRELALSGYALVETYSVLTRMPGDARLSGPDAA 62
Query 65 RLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
RLL RF APL LS + L++ I GGAVYD LVALAA EH LATRDARA+
Sbjct 63 RLLDVRFTAPLTLSGPHARKVHATLSRVGIVGGAVYDGLVALAAKEHGLALATRDARARG 122
Query 125 TYEKIGVHVVVAA 137
TY+ +GV V+V A
Sbjct 123 TYDALGVKVIVVA 135
>gi|158314179|ref|YP_001506687.1| PilT domain-containing protein [Frankia sp. EAN1pec]
gi|158109584|gb|ABW11781.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=135
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/133 (61%), Positives = 94/133 (71%), Gaps = 0/133 (0%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+AVD SVA+PLLVR+H H VV WWA RE L GHALAETYSVLTR+P D RL+ DAA
Sbjct 3 IAVDASVAVPLLVRSHVQHEDVVRWWAGRELTLSGHALAETYSVLTRMPGDARLSGSDAA 62
Query 65 RLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
RLL RF APL L+ + + L + I GGAVYD LVALAA EH LATRDARA+
Sbjct 63 RLLDARFTAPLTLTGPVAQSVHTTLGRLGIAGGAVYDGLVALAAREHGLALATRDARARG 122
Query 125 TYEKIGVHVVVAA 137
TY+ +GV VV+ A
Sbjct 123 TYDAVGVKVVIVA 135
>gi|288922493|ref|ZP_06416677.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288346157|gb|EFC80502.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/133 (58%), Positives = 93/133 (70%), Gaps = 0/133 (0%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+AVDTSVA+PLLVR+H H V WW ++ L GHALAETYSVLTRLP D RL+ DAA
Sbjct 3 IAVDTSVAVPLLVRSHQHHTDVARWWGGQQLTLSGHALAETYSVLTRLPGDARLSGPDAA 62
Query 65 RLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
RLL RF APL+LS + + L++ I GGAVYD LVAL A EH LATRDARA+
Sbjct 63 RLLDARFTAPLVLSGPPAQQIHTTLSRLGIVGGAVYDGLVALTAKEHGLALATRDARARG 122
Query 125 TYEKIGVHVVVAA 137
TY+ +GV V++
Sbjct 123 TYDAVGVKVILVG 135
>gi|111219702|ref|YP_710496.1| hypothetical protein FRAAL0206 [Frankia alni ACN14a]
gi|111147234|emb|CAJ58884.1| conserved hypothetical protein [Frankia alni ACN14a]
Length=135
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/131 (60%), Positives = 92/131 (71%), Gaps = 0/131 (0%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+AVDTSVAIPLLVR+H H V WW ++ L GHALAETYSVLTRLP D RL+ DAA
Sbjct 3 IAVDTSVAIPLLVRSHQHHTDVARWWDGQQLTLSGHALAETYSVLTRLPGDARLSGPDAA 62
Query 65 RLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
RLL RF APL LS + + L+Q I GGAVYD LVALAA H LATRDARA+
Sbjct 63 RLLDARFTAPLALSGPPAQEIHTTLSQLGIAGGAVYDGLVALAAKAHGLALATRDARARG 122
Query 125 TYEKIGVHVVV 135
TY+ +GV +++
Sbjct 123 TYDAVGVKLIL 133
>gi|86741255|ref|YP_481655.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86568117|gb|ABD11926.1| PilT protein-like [Frankia sp. CcI3]
Length=133
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/121 (62%), Positives = 85/121 (71%), Gaps = 0/121 (0%)
Query 6 AVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAAR 65
AVDTSVA+PL+VR+HT H VV WW RE L GHALAETYSVLTRLP D RL+ DAAR
Sbjct 4 AVDTSVAVPLVVRSHTHHVDVVRWWDGRELTLSGHALAETYSVLTRLPGDARLSGPDAAR 63
Query 66 LLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDT 125
LL RF AP LS + + L++ I GGAVYD LVALA EH LATRDARA+ T
Sbjct 64 LLDARFTAPCALSGSHAQKVHTTLSRLGIAGGAVYDGLVALAVKEHDLALATRDARARGT 123
Query 126 Y 126
+
Sbjct 124 W 124
>gi|336119319|ref|YP_004574096.1| hypothetical protein MLP_36790 [Microlunatus phosphovorus NM-1]
gi|334687108|dbj|BAK36693.1| hypothetical protein MLP_36790 [Microlunatus phosphovorus NM-1]
Length=144
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/134 (56%), Positives = 92/134 (69%), Gaps = 0/134 (0%)
Query 2 KPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPM 61
PP++VDTSVA+PLLV +H H AV W R ++ GHALAETYSVLTRLP + R+AP
Sbjct 8 DPPVSVDTSVAVPLLVASHQHHDAVAEWARGRALSVSGHALAETYSVLTRLPGNSRVAPG 67
Query 62 DAARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDAR 121
DA L+ E F L+LS+ + + R L+ I GGA YD L+ALAA EH A LATRDAR
Sbjct 68 DAVVLIDESFGGVLVLSADAAQTVHRELSGSGIAGGATYDGLMALAAREHGATLATRDAR 127
Query 122 AKDTYEKIGVHVVV 135
A+ TYE +GV V V
Sbjct 128 ARATYEALGVAVEV 141
>gi|315446131|ref|YP_004079010.1| PIN domain-containing protein [Mycobacterium sp. Spyr1]
gi|315264434|gb|ADU01176.1| PIN domain-containing protein [Mycobacterium sp. Spyr1]
Length=136
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/132 (57%), Positives = 83/132 (63%), Gaps = 0/132 (0%)
Query 6 AVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAAR 65
AVDTSVA+PLLV +H HAAV W + L GHAL ETYSVLTRLP D RL P DA
Sbjct 5 AVDTSVAVPLLVGSHREHAAVAKWAKGKTLGLSGHALTETYSVLTRLPGDARLLPQDAVA 64
Query 66 LLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDT 125
L+ F A L L +R R LA+ I GGA YD LVALAA EH LATRDARA+ T
Sbjct 65 LIDANFTASLTLGARVARRAHRELARRGIGGGATYDGLVALAAREHGVVLATRDARARAT 124
Query 126 YEKIGVHVVVAA 137
YE + V V A
Sbjct 125 YEALSVDTEVVA 136
>gi|108797802|ref|YP_637999.1| PilT protein-like protein [Mycobacterium sp. MCS]
gi|119866895|ref|YP_936847.1| PilT domain-containing protein [Mycobacterium sp. KMS]
gi|108768221|gb|ABG06943.1| PilT protein-like protein [Mycobacterium sp. MCS]
gi|119692984|gb|ABL90057.1| PilT protein domain protein [Mycobacterium sp. KMS]
Length=144
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/135 (55%), Positives = 83/135 (62%), Gaps = 0/135 (0%)
Query 3 PPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMD 62
P AVDTSVA+PLLV +H H V W R L GHALAETYSVLTRLP D R++P D
Sbjct 5 PVTAVDTSVAVPLLVASHRQHTLVAKWAKARPLGLSGHALAETYSVLTRLPGDARVSPAD 64
Query 63 AARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARA 122
A L+ E F L L +R R A+ I GGA YD LVALAA E A L TRDARA
Sbjct 65 AVVLIDENFPESLQLGARAARAAHREFARRGIAGGATYDGLVALAARERGAVLFTRDARA 124
Query 123 KDTYEKIGVHVVVAA 137
+ TYE +GV V A
Sbjct 125 RSTYEALGVRTEVLA 139
>gi|126433455|ref|YP_001069146.1| PilT domain-containing protein [Mycobacterium sp. JLS]
gi|126233255|gb|ABN96655.1| PilT protein domain protein [Mycobacterium sp. JLS]
Length=141
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/135 (54%), Positives = 80/135 (60%), Gaps = 0/135 (0%)
Query 3 PPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMD 62
P AVDTSVA+PLLV +H H V W R L GHALAETYSVLTRLP D R+ D
Sbjct 5 PLTAVDTSVAVPLLVTSHRQHTMVAKWAKARPLGLSGHALAETYSVLTRLPGDARVTAAD 64
Query 63 AARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARA 122
A L+ E F L +R R A+ I GGA YD LVALAA E A L TRDARA
Sbjct 65 AVALIDENFPESFQLGARAARAAHREFARRGIAGGATYDGLVALAARERGAVLFTRDARA 124
Query 123 KDTYEKIGVHVVVAA 137
+ TYE +GV V A
Sbjct 125 RSTYEALGVSTEVLA 139
>gi|306818933|ref|ZP_07452654.1| PilT protein family protein [Mobiluncus mulieris ATCC 35239]
gi|307700676|ref|ZP_07637701.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
gi|304648335|gb|EFM45639.1| PilT protein family protein [Mobiluncus mulieris ATCC 35239]
gi|307613671|gb|EFN92915.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
Length=139
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 82/130 (64%), Gaps = 2/130 (1%)
Query 6 AVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAAR 65
A+DTSVA+PLL HTAH V W ++ L GHA ETYSVLTRLP DL +AP D R
Sbjct 6 AIDTSVAVPLLQSAHTAHRMVRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVAPPDVLR 65
Query 66 LLTERFAAPLLLSSRTT-EHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
L F + L S + + LP ++A ++GG+VYD LV LAA +H LATRDARA
Sbjct 66 LFEAWFLPAVFLDSTSQAQALPELVAA-GVSGGSVYDGLVGLAAVKHGLTLATRDARAAS 124
Query 125 TYEKIGVHVV 134
TY+ +GV +
Sbjct 125 TYQHLGVDFI 134
>gi|227875625|ref|ZP_03993764.1| PilT protein family protein [Mobiluncus mulieris ATCC 35243]
gi|227843810|gb|EEJ53980.1| PilT protein family protein [Mobiluncus mulieris ATCC 35243]
Length=139
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/130 (50%), Positives = 82/130 (64%), Gaps = 2/130 (1%)
Query 6 AVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAAR 65
A+DTSVA+PLL HTAH V W ++ L GHA ETYSVLTRLP DL ++P D R
Sbjct 6 AIDTSVAVPLLQSAHTAHRMVRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVSPPDVLR 65
Query 66 LLTERFAAPLLLSSRTT-EHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
L F + L S + + LP ++A ++GG+VYD LV LAA +H LATRDARA
Sbjct 66 LFEAWFLPAVFLDSTSQAQALPELVAA-GVSGGSVYDGLVGLAAVKHGLTLATRDARAAS 124
Query 125 TYEKIGVHVV 134
TY+ +GV +
Sbjct 125 TYQHLGVDFI 134
>gi|269977131|ref|ZP_06184104.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
gi|269934434|gb|EEZ90995.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
Length=139
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/130 (50%), Positives = 81/130 (63%), Gaps = 2/130 (1%)
Query 6 AVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAAR 65
A+DTSVA+PLL H AH V W ++ L GHA ETYSVLTRLP DL +AP D R
Sbjct 6 AIDTSVAVPLLQSAHAAHRMVRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVAPPDVLR 65
Query 66 LLTERFAAPLLLSSRTT-EHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
L F + L S + + LP ++A ++GG+VYD LV LAA +H LATRDARA
Sbjct 66 LFEAWFLPAVFLDSTSQAQALPELVAA-GVSGGSVYDGLVGLAAVKHGLTLATRDARAAS 124
Query 125 TYEKIGVHVV 134
TY+ +GV +
Sbjct 125 TYQHLGVDFI 134
>gi|336119588|ref|YP_004574365.1| hypothetical protein MLP_39480 [Microlunatus phosphovorus NM-1]
gi|334687377|dbj|BAK36962.1| hypothetical protein MLP_39480 [Microlunatus phosphovorus NM-1]
Length=142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/127 (46%), Positives = 70/127 (56%), Gaps = 0/127 (0%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
L +DTS A+ L+ H AH AV L GHA ET+SVLTRLP R+AP A
Sbjct 8 LLLDTSAAVALVDPDHVAHDAVRDRVRGHRLGLAGHAEFETFSVLTRLPGAKRVAPEAAI 67
Query 65 RLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
RL+ F LS E L + + + GGAVYDALVA AA EH L +RDARA
Sbjct 68 RLIQIGFPETRHLSRTAAELLLTEVGRRGVAGGAVYDALVAAAAGEHALLLVSRDARAMA 127
Query 125 TYEKIGV 131
TY +G+
Sbjct 128 TYRAMGI 134
>gi|336178805|ref|YP_004584180.1| hypothetical protein FsymDg_2935 [Frankia symbiont of Datisca
glomerata]
gi|334859785|gb|AEH10259.1| hypothetical protein FsymDg_2935 [Frankia symbiont of Datisca
glomerata]
Length=135
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/129 (45%), Positives = 66/129 (52%), Gaps = 2/129 (1%)
Query 6 AVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAAR 65
AVDTSV + H HA A R L HA E+YSVLT LP R P
Sbjct 3 AVDTSVVVACFASWHEHHAIARKAMACRPR-LVAHAAVESYSVLTCLPPPHRAQPSIVHA 61
Query 66 LLTERFAAPLL-LSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKD 124
+TERF P L LS + L + +I GG YDAL+A AAEHRA L + D RA
Sbjct 62 FITERFTEPFLTLSETGYQELLATVTASQILGGPAYDALIAFTAAEHRATLMSLDQRAAA 121
Query 125 TYEKIGVHV 133
TYE +GV V
Sbjct 122 TYEAVGVTV 130
>gi|333989910|ref|YP_004522524.1| hypothetical protein JDM601_1270 [Mycobacterium sp. JDM601]
gi|333485878|gb|AEF35270.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=144
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/126 (43%), Positives = 69/126 (55%), Gaps = 0/126 (0%)
Query 7 VDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARL 66
VDTS A+ L R H A A + GHA E SVLTRLP RL+P+ A RL
Sbjct 10 VDTSAALALAQRESLFHHAAKARLLACRRGMAGHAAVELLSVLTRLPPPQRLSPVAALRL 69
Query 67 LTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTY 126
F LS+ T++L R A+ + GGA+YDALV AA +H+ L + D RA+ TY
Sbjct 70 QETNFPESRFLSATDTKNLLREFAEVGLAGGALYDALVGAAARKHKLPLISCDRRAEPTY 129
Query 127 EKIGVH 132
+GV+
Sbjct 130 RVLGVN 135
>gi|31793780|ref|NP_856273.1| hypothetical protein Mb2627 [Mycobacterium bovis AF2122/97]
gi|121638481|ref|YP_978705.1| hypothetical protein BCG_2619 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990975|ref|YP_002645662.1| hypothetical protein JTY_2613 [Mycobacterium bovis BCG str. Tokyo
172]
28 more sequence titles
Length=134
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/130 (43%), Positives = 72/130 (56%), Gaps = 2/130 (1%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+A DTSV + H H A V +R L HA ETYSVLTRLP R+AP+
Sbjct 2 IAPDTSVLVAGFATWHEGHEAAVRAL-NRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 65 RLLTERFAAPLL-LSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAK 123
L + ++ L L +R+ L LA+ ++TGGA YDALV A A+L TRD RA
Sbjct 61 AYLADITSSNYLALDARSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 124 DTYEKIGVHV 133
+TYE++ V V
Sbjct 121 ETYERLRVEV 130
>gi|340627613|ref|YP_004746065.1| hypothetical protein MCAN_26381 [Mycobacterium canettii CIPT
140010059]
gi|340005803|emb|CCC44969.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=134
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/130 (43%), Positives = 72/130 (56%), Gaps = 2/130 (1%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+A DTSV + H H A V +R L HA ETYSVLTRLP R+AP+
Sbjct 2 IAPDTSVLVAGFATWHEGHEAAVRAL-NRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 65 RLLTERFAAPLL-LSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAK 123
L + ++ L L +R+ L LA+ ++TGGA YDALV A A+L TRD RA
Sbjct 61 AYLADITSSNYLALDARSYRGLIDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 124 DTYEKIGVHV 133
+TYE++ V V
Sbjct 121 ETYERLRVEV 130
>gi|15609733|ref|NP_217112.1| hypothetical protein Rv2596 [Mycobacterium tuberculosis H37Rv]
gi|148662435|ref|YP_001283958.1| hypothetical protein MRA_2624 [Mycobacterium tuberculosis H37Ra]
gi|148823790|ref|YP_001288544.1| hypothetical protein TBFG_12615 [Mycobacterium tuberculosis F11]
44 more sequence titles
Length=134
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/130 (42%), Positives = 71/130 (55%), Gaps = 2/130 (1%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+A DTSV + H H A V +R L HA ETYSVLTRLP R+AP+
Sbjct 2 IAPDTSVLVAGFATWHEGHEAAVRAL-NRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 65 RLLTERFAAPLL-LSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAK 123
L + ++ L L + + L LA+ ++TGGA YDALV A A+L TRD RA
Sbjct 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 124 DTYEKIGVHV 133
+TYE++ V V
Sbjct 121 ETYERLRVEV 130
>gi|289762769|ref|ZP_06522147.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289710275|gb|EFD74291.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=134
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/130 (42%), Positives = 71/130 (55%), Gaps = 2/130 (1%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAA 64
+A DTSV + H H A V +R L HA ETYSVLTRLP R+AP+
Sbjct 2 IAPDTSVLVAGFATWHEGHEAAVRAL-NRGIHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 65 RLLTERFAAPLL-LSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAK 123
L + ++ L L + + L LA+ ++TGGA YDALV A A+L TRD RA
Sbjct 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 124 DTYEKIGVHV 133
+TYE++ V V
Sbjct 121 ETYERLRVEV 130
>gi|15842135|ref|NP_337172.1| hypothetical protein MT2672 [Mycobacterium tuberculosis CDC1551]
gi|13882420|gb|AAK46986.1| hypothetical protein MT2672 [Mycobacterium tuberculosis CDC1551]
Length=127
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/103 (44%), Positives = 60/103 (59%), Gaps = 1/103 (0%)
Query 32 HREAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLL-LSSRTTEHLPRVLA 90
+R L HA ETYSVLTRLP R+AP+ L + ++ L L + + L LA
Sbjct 21 NRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLALDACSYRGLTDHLA 80
Query 91 QFEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHV 133
+ ++TGGA YDALV A A+L TRD RA +TYE++ V V
Sbjct 81 EHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEV 123
>gi|240169440|ref|ZP_04748099.1| hypothetical protein MkanA1_09014 [Mycobacterium kansasii ATCC
12478]
Length=101
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/88 (46%), Positives = 48/88 (55%), Gaps = 0/88 (0%)
Query 44 ETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDAL 103
E SVLTRLP RL+P A RL F LS+ T L + Q + GGA+YD L
Sbjct 2 ELLSVLTRLPPPQRLSPAAALRLEVTNFPDSRFLSATDTADLLQEFVQAGLAGGALYDGL 61
Query 104 VALAAAEHRAELATRDARAKDTYEKIGV 131
V AA EH+ L T D RA+ TY +GV
Sbjct 62 VGAAAREHKLPLITCDRRAEPTYRVLGV 89
>gi|334120341|ref|ZP_08494422.1| PilT protein domain protein [Microcoleus vaginatus FGP-2]
gi|333456688|gb|EGK85318.1| PilT protein domain protein [Microcoleus vaginatus FGP-2]
Length=144
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/108 (34%), Positives = 58/108 (54%), Gaps = 7/108 (6%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWWAH---RE--AALCGHALAETYSVLTRLPRDLRLAPMD 62
DTSV I L+ H +H+ ++W RE + H +AE YSVLTR+PR R+ P
Sbjct 6 DTSVLIAALIEDHPSHSQSLSWLERVRAREIDGFVSTHTIAELYSVLTRIPRQPRINPGL 65
Query 63 AARLLTERFAA--PLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAA 108
A +L+ E ++ ++L++ + + + GG +YD L+A AA
Sbjct 66 AQQLIVENLSSFNKVVLTAEDYQTTVSKMVSLNLPGGGIYDGLIAQAA 113
>gi|37521277|ref|NP_924654.1| hypothetical protein gll1708 [Gloeobacter violaceus PCC 7421]
gi|35212274|dbj|BAC89649.1| gll1708 [Gloeobacter violaceus PCC 7421]
Length=145
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/117 (32%), Positives = 64/117 (55%), Gaps = 11/117 (9%)
Query 8 DTSVAIPLLVRTHTAHAAVVAW-WAHR------EAALCGHALAETYSVLTRLPRDLRLAP 60
DTSV +P +V +H H + W W R + + LAE+Y+VLTRLP R+ P
Sbjct 6 DTSVLVPAIVHSHENHE--ICWSWVERARSGQVQGLMAVRTLAESYAVLTRLPLRPRIQP 63
Query 61 MDAARLLTE--RFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAEL 115
+ A RL+ E + + L++ + ++A+ + GG +YDAL+A A + ++++
Sbjct 64 LLAKRLILEVSEYVTTVPLTAGDYRSVVALMAELGLPGGGIYDALIAQTALQSQSDV 120
>gi|239904705|ref|YP_002951443.1| hypothetical protein DMR_00660 [Desulfovibrio magneticus RS-1]
gi|239794568|dbj|BAH73557.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length=143
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (34%), Positives = 60/116 (52%), Gaps = 8/116 (6%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWW-----AHREAALCGHALAETYSVLTRLPRDLRLAPMD 62
DTSV + +V++H H W+ E A+ H LAETY+ LT P R++P+
Sbjct 6 DTSVLVAAMVKSHPMHQRAFPWYLKSRRGEIEMAVAAHGLAETYACLTTYPSRPRISPVA 65
Query 63 AARLLTE---RFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAEL 115
A LL E R + + L R +++ +GG+VYDAL +AA ++ A+L
Sbjct 66 AMALLRESIVRTSTVVSLDGRDYLEALDMVSDKGRSGGSVYDALHVIAAEKNGADL 121
>gi|297567633|ref|YP_003686604.1| hypothetical protein Mesil_3282 [Meiothermus silvanus DSM 9946]
gi|296852082|gb|ADH65096.1| hypothetical protein Mesil_3282 [Meiothermus silvanus DSM 9946]
Length=147
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/117 (36%), Positives = 59/117 (51%), Gaps = 7/117 (5%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWWAH-----REAALCGHALAETYSVLTRLPRDLRLA 59
L DTS + V +H AH A W + A+ H LAE Y+VLTRLP +
Sbjct 3 LLFDTSSLVAAFVLSHPAHTAAWEWLEQTLEGVHDGAVATHTLAELYAVLTRLPLRPAIP 62
Query 60 PMDAARLLTE--RFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAE 114
P A +L+ E R + LS + + L + + GGA+YDAL+A AA + +AE
Sbjct 63 PPVALQLIEENLRGFQTIALSVADYRAVLQRLEKLNLVGGAIYDALIAQAALKAKAE 119
>gi|153871622|ref|ZP_02000746.1| PilT-like protein [Beggiatoa sp. PS]
gi|152071909|gb|EDN69251.1| PilT-like protein [Beggiatoa sp. PS]
Length=146
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (51%), Gaps = 9/110 (8%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWWAHREAAL-----CGHALAETYSVLTRLP-RDLRLAPM 61
DTS + LV +H H V+ W + L H+LAE Y++LT P + R++P
Sbjct 7 DTSTLVAALVESHPKHTLVLPWLQRVKKGLDKGVVSAHSLAELYNILTIFPAKPRRISPQ 66
Query 62 DAARLLTERF---AAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAA 108
+A +L+ + + LS + + + L++ + GG +YDAL+ AA
Sbjct 67 EAQQLIQQNLLEVFEIITLSEQDYMSVIKHLSESGVIGGVIYDALILKAA 116
>gi|303246740|ref|ZP_07333017.1| PilT protein domain protein [Desulfovibrio fructosovorans JJ]
gi|302491757|gb|EFL51637.1| PilT protein domain protein [Desulfovibrio fructosovorans JJ]
Length=143
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/116 (35%), Positives = 56/116 (49%), Gaps = 8/116 (6%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWW-----AHREAALCGHALAETYSVLTRLPRDLRLAPMD 62
DTSV + LV++H H AW+ E + H LAETY+ LT P R++P
Sbjct 6 DTSVLVAALVQSHPQHQRAFAWYLKCRRGELEMLVAAHGLAETYASLTVYPARPRISPRS 65
Query 63 AARLLTER---FAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAEL 115
AA LL + + L R +A+ GG++YDAL +AA + AEL
Sbjct 66 AAMLLQASVLGVCSVITLDCRDYVAAMESVARIGRGGGSIYDALHVVAARKGGAEL 121
>gi|220908830|ref|YP_002484141.1| PilT protein domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865441|gb|ACL45780.1| PilT protein domain protein [Cyanothece sp. PCC 7425]
Length=144
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/116 (33%), Positives = 57/116 (50%), Gaps = 23/116 (19%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWW-----AHREAALCGHALAETYSVLTRLPRDLRLAPMD 62
DTSV I L+ H +HA+ A + L H+LAE YSV+TR+P R++P +
Sbjct 6 DTSVIIAALLPKHPSHASCFAQLLAAELNQIQGYLSTHSLAEVYSVMTRMPSQPRISPQE 65
Query 63 AARLLTERFAAPLLLSSRTTEHLPRVLAQF----------EITGGAVYDALVALAA 108
++L ER + E +P +A + + GG V+DAL+A AA
Sbjct 66 -VQILLER-------CLQYLEVIPLEIADYRAAIALMTSLNLPGGGVFDALIAQAA 113
>gi|299136185|ref|ZP_07029369.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
gi|298602309|gb|EFI58463.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=141
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/114 (32%), Positives = 56/114 (50%), Gaps = 7/114 (6%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWWA--HREAALCG-HALAETYSVLTRLPRDLRLAPMDAA 64
DTSV +P+ H H A + + +R CG H+L E +S LTR+P R++P A
Sbjct 6 DTSVLVPVFYGDHVHHEASLRLFIQFNRSTGCCGAHSLVEVFSTLTRMPGKHRISPEQAI 65
Query 65 RLLT---ERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAEL 115
+ ER L + L + A I GG++YDA++A A + +A +
Sbjct 66 LFIGSIRERLTLIALDGDEYADTL-EISAARGIVGGSIYDAMLAQCAIKAQAGI 118
>gi|166368214|ref|YP_001660487.1| PilT protein-like protein [Microcystis aeruginosa NIES-843]
gi|166090587|dbj|BAG05295.1| PilT protein-like protein [Microcystis aeruginosa NIES-843]
Length=143
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (29%), Positives = 61/115 (54%), Gaps = 8/115 (6%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWWAHREAA-----LCGHALAETYSVLTRLPRDLRLAPMD 62
DTS I L+ HT H+A + + ++ + H LAE YSVLTR+P+ +++P
Sbjct 6 DTSALIAALLTGHTHHSACLPFLLQAQSQQIQGLIATHTLAELYSVLTRIPKT-KISPAV 64
Query 63 AARLLTERFAAPLLLSSRTTEHLPRV--LAQFEITGGAVYDALVALAAAEHRAEL 115
A L+ + +S ++ + + Q ++ GG ++DAL+A A + +A++
Sbjct 65 AQNLIRDNLQTFDTVSLTAEDYTAAIDLMVQRQLPGGGIFDALIAQAVLKSQADV 119
>gi|86740896|ref|YP_481296.1| hypothetical protein Francci3_2198 [Frankia sp. CcI3]
gi|86567758|gb|ABD11567.1| hypothetical protein Francci3_2198 [Frankia sp. CcI3]
Length=70
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/42 (58%), Positives = 28/42 (67%), Gaps = 0/42 (0%)
Query 92 FEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHV 133
F I GG YDAL+A AAEH+A L + D RA TYE IG+ V
Sbjct 24 FLILGGPAYDALIAFTAAEHQATLMSLDQRAAATYEAIGITV 65
>gi|37523217|ref|NP_926594.1| hypothetical protein gll3648 [Gloeobacter violaceus PCC 7421]
gi|35214220|dbj|BAC91589.1| gll3648 [Gloeobacter violaceus PCC 7421]
Length=142
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/117 (27%), Positives = 52/117 (45%), Gaps = 8/117 (6%)
Query 5 LAVDTSVAIPLLVRTHTAHAAVVAWW-----AHREAALCGHALAETYSVLTRLPRDLRLA 59
L +DT++ I V H AH + E +C +L+E + +T + R +L+
Sbjct 3 LLIDTNILIAGTVPGHPAHGRCLPVMQGIISGGDEGYVCLQSLSEYFRFMTGVARP-QLS 61
Query 60 PMDAARLLTERFAAPLLLSSRTTEHLPRV--LAQFEITGGAVYDALVALAAAEHRAE 114
P A R + + A + T+HL + + G VYDAL+A A + R +
Sbjct 62 PKSAERAIKQLLANFKAVGLDETDHLAVFTRMGALGLHGAVVYDALIARAGLKARVD 118
>gi|294506057|ref|YP_003570115.1| hypothetical protein SRM_00242 [Salinibacter ruber M8]
gi|294342385|emb|CBH23163.1| Conserved hypothetical protein [Salinibacter ruber M8]
Length=142
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/90 (39%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query 37 LCGHALAETYSVLTRLPRDLRLAPMDAARLLTERF--AAPLLLSSRTTEHLPRVL--AQF 92
+ HALAE YS LT LP + P A RL+ E AA ++ TE+L + A
Sbjct 37 ISSHALAECYSSLTALPVSPAVTPGQARRLVEENIVEAAERVVELGRTEYLNALQRAADR 96
Query 93 EITGGAVYDALVALAAAEHRA-ELATRDAR 121
+ GAVYD L L A + A EL T + R
Sbjct 97 GLESGAVYDVLHVLCAEKASADELRTFNGR 126
>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC
12478]
Length=142
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/61 (43%), Positives = 31/61 (51%), Gaps = 4/61 (6%)
Query 63 AARLLTERFAAPLLLSSRTTEHLPRVLA----QFEITGGAVYDALVALAAAEHRAELATR 118
A R + E A P++ TE RV A Q EITG V DA +A A EH ELA+
Sbjct 65 AWRYVAEWLAVPVVWIPPATETTARVYARLSEQVEITGNLVPDAQLAALAVEHGVELASA 124
Query 119 D 119
D
Sbjct 125 D 125
>gi|325283833|ref|YP_004256374.1| PilT protein domain-containing protein [Deinococcus proteolyticus
MRP]
gi|324315642|gb|ADY26757.1| PilT protein domain protein [Deinococcus proteolyticus MRP]
Length=139
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 53/108 (50%), Gaps = 16/108 (14%)
Query 6 AVDTSVAIPLLVRTHTAHAAVVAWWAHREA------ALCGHALAETYSVLTRLPRDLRLA 59
++DTSV + + H HA WA R+ A+ H+LAE Y V+ PR ++L+
Sbjct 5 SLDTSVIVASIYPEHPQHA-----WALRQRQKAEALAMSAHSLAEVYKVIKGHPR-IKLS 58
Query 60 PMDAA---RLLTERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALV 104
P A R L ++ L + L R A+ +++G ++DAL+
Sbjct 59 PSQATPLLRALADQVRVIPLTEASYHAALTRC-AKHQLSGSVIFDALI 105
>gi|197117645|ref|YP_002138072.1| trans-isoprenyl diphosphate synthase [Geobacter bemidjiensis
Bem]
gi|197087005|gb|ACH38276.1| trans-isoprenyl diphosphate synthase [Geobacter bemidjiensis
Bem]
Length=295
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/107 (32%), Positives = 46/107 (43%), Gaps = 11/107 (10%)
Query 8 DTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARLL 67
D +A + TH A + A R A+ G A ET+ LTR + LA
Sbjct 168 DIDMATLSYIHTHKTGALIRASV--RAGAILGGANEETFDALTRYADAIGLAF------- 218
Query 68 TERFAAPLLLSSRTTEHLPRVLAQFEITGGAVYDALVALAAAEHRAE 114
+ A +L TTE L + + G A Y ALV L A++ RAE
Sbjct 219 --QIADDVLDVEGTTEELGKDAGSDQARGKATYPALVGLEASKRRAE 263
>gi|317030801|ref|XP_001392262.2| hypothetical protein ANI_1_1678074 [Aspergillus niger CBS 513.88]
Length=270
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/83 (37%), Positives = 39/83 (47%), Gaps = 8/83 (9%)
Query 46 YSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSRTTEHLPRVLAQFEITGG---AVYDA 102
YS +T+LPRDL+ A +D TE F L+ T +LA EI G +
Sbjct 178 YSWVTKLPRDLKEAHLDVIESKTESFQESLVQKCTDT----YLLALGEILRGTKLTCAED 233
Query 103 LVALAAAEHRAELATRDARAKDT 125
+V L +H AEL A KDT
Sbjct 234 IVPL-VTKHEAELQELCAERKDT 255
>gi|118471205|ref|YP_885683.1| xanthine/uracil permeases family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118172492|gb|ABK73388.1| xanthine/uracil permeases family protein [Mycobacterium smegmatis
str. MC2 155]
Length=634
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/53 (34%), Positives = 26/53 (50%), Gaps = 0/53 (0%)
Query 39 GHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSRTTEHLPRVLAQ 91
GHALA + L+ L D + A E F PL++ +R T+H R+L
Sbjct 532 GHALAVDHVALSNLDEDDHNDVVQLATAYREHFGFPLIICARETQHFDRILQN 584
Lambda K H
0.323 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128325363320
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40