BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0599c Length=78 Score E Sequences producing significant alignments: (Bits) Value gi|15607739|ref|NP_215113.1| hypothetical protein Rv0599c [Mycob... 154 5e-36 gi|15840002|ref|NP_335039.1| hypothetical protein MT0629 [Mycoba... 154 6e-36 gi|86741256|ref|YP_481656.1| AbrB family transcriptional regulat... 112 2e-23 gi|111219703|ref|YP_710497.1| hypothetical protein FRAAL0207 [Fr... 111 4e-23 gi|86741977|ref|YP_482377.1| AbrB family transcriptional regulat... 110 1e-22 gi|288922494|ref|ZP_06416678.1| transcriptional regulator, AbrB ... 108 4e-22 gi|119866894|ref|YP_936846.1| AbrB family transcriptional regula... 102 2e-20 gi|126433454|ref|YP_001069145.1| AbrB family transcriptional reg... 102 2e-20 gi|315446132|ref|YP_004079011.1| AbrB family transcriptional reg... 96.3 1e-18 gi|145225772|ref|YP_001136450.1| AbrB family transcriptional reg... 93.6 1e-17 gi|336119320|ref|YP_004574097.1| hypothetical protein MLP_36800 ... 90.1 9e-17 gi|306818932|ref|ZP_07452653.1| AbrB family transcriptional regu... 74.3 6e-12 gi|227875624|ref|ZP_03993763.1| AbrB family transcriptional regu... 73.9 7e-12 gi|158314178|ref|YP_001506686.1| hypothetical protein Franean1_2... 67.4 7e-10 gi|283852880|ref|ZP_06370141.1| transcriptional regulator, AbrB ... 46.6 0.001 gi|15609732|ref|NP_217111.1| hypothetical protein Rv2595 [Mycoba... 46.2 0.001 gi|306804355|ref|ZP_07441023.1| antitoxin [Mycobacterium tubercu... 45.1 0.004 gi|297567634|ref|YP_003686605.1| hypothetical protein Mesil_3283... 43.1 0.015 gi|150017133|ref|YP_001309387.1| AbrB family transcriptional reg... 42.0 0.033 gi|57641011|ref|YP_183489.1| SpoVT/AbrB family transcription reg... 42.0 0.033 gi|94264250|ref|ZP_01288045.1| Transcriptional regulator AbrB [d... 41.2 0.050 gi|336119589|ref|YP_004574366.1| hypothetical protein MLP_39490 ... 41.2 0.055 gi|194337517|ref|YP_002019311.1| AbrB family transcriptional reg... 40.0 0.10 gi|332796080|ref|YP_004457580.1| VapB-type antitoxin [Acidianus ... 40.0 0.11 gi|13473341|ref|NP_104908.1| hypothetical protein msl3900 [Mesor... 40.0 0.11 gi|116626049|ref|YP_828205.1| hypothetical protein Acid_7007 [Ca... 39.3 0.18 gi|333967653|gb|AEG34417.1| SpoVT/AbrB domain-containing protein... 39.3 0.20 gi|284176098|ref|ZP_06390067.1| transcriptional regulator, AbrB ... 38.9 0.22 gi|55377869|ref|YP_135719.1| transcription regulator [Haloarcula... 38.9 0.27 gi|227829862|ref|YP_002831641.1| transcriptional regulator, AbrB... 38.9 0.28 gi|15964819|ref|NP_385172.1| hypothetical protein SMc02658 [Sino... 38.9 0.28 gi|83815403|ref|YP_444380.1| transcriptional regulator, AbrB fam... 38.9 0.29 gi|240169441|ref|ZP_04748100.1| hypothetical protein MkanA1_0901... 38.1 0.44 gi|46255255|ref|YP_006167.1| hypothetical protein TT_P0184 [Ther... 37.7 0.61 gi|239904706|ref|YP_002951444.1| hypothetical protein DMR_00670 ... 37.4 0.68 gi|218671300|ref|ZP_03520970.1| hypothetical protein RetlG_06353... 37.4 0.69 gi|229578672|ref|YP_002837070.1| AbrB family transcriptional reg... 37.4 0.73 gi|238619284|ref|YP_002914109.1| transcriptional regulator, AbrB... 37.4 0.77 gi|189500341|ref|YP_001959811.1| AbrB family transcriptional reg... 37.4 0.78 gi|15920210|ref|NP_375879.1| hypothetical protein STS011 [Sulfol... 37.0 0.95 gi|294506055|ref|YP_003570113.1| hypothetical protein SRM_00240 ... 36.6 1.1 gi|119720383|ref|YP_920878.1| AbrB family transcriptional regula... 36.6 1.2 gi|229821219|ref|YP_002882745.1| AbrB family transcriptional reg... 36.6 1.3 gi|229014679|ref|ZP_04171790.1| Transition state regulatory prot... 36.6 1.4 gi|325283834|ref|YP_004256375.1| transcriptional regulator, AbrB... 36.6 1.4 gi|163760733|ref|ZP_02167813.1| hypothetical protein HPDFL43_127... 36.6 1.4 gi|229037623|ref|ZP_04189481.1| Transcriptional regulator, AbrB ... 36.2 1.6 gi|343461182|gb|AEM39618.1| transcriptional regulator, AbrB fami... 36.2 1.6 gi|229172721|ref|ZP_04300278.1| Transition state regulatory prot... 36.2 1.6 gi|15891912|ref|NP_357584.1| hypothetical protein Atu3014 [Agrob... 35.8 1.9 >gi|15607739|ref|NP_215113.1| hypothetical protein Rv0599c [Mycobacterium tuberculosis H37Rv] gi|31791781|ref|NP_854274.1| hypothetical protein Mb0615c [Mycobacterium bovis AF2122/97] gi|121636517|ref|YP_976740.1| hypothetical protein BCG_0645c [Mycobacterium bovis BCG str. Pasteur 1173P2] 73 more sequence titles Length=78 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/78 (100%), Positives = 78/78 (100%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG Sbjct 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 Query 61 ETTIDDEVVFGLIDSGRK 78 ETTIDDEVVFGLIDSGRK Sbjct 61 ETTIDDEVVFGLIDSGRK 78 >gi|15840002|ref|NP_335039.1| hypothetical protein MT0629 [Mycobacterium tuberculosis CDC1551] gi|298524086|ref|ZP_07011495.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|13880145|gb|AAK44853.1| hypothetical protein MT0629 [Mycobacterium tuberculosis CDC1551] gi|298493880|gb|EFI29174.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] Length=87 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/78 (100%), Positives = 78/78 (100%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG Sbjct 10 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 69 Query 61 ETTIDDEVVFGLIDSGRK 78 ETTIDDEVVFGLIDSGRK Sbjct 70 ETTIDDEVVFGLIDSGRK 87 >gi|86741256|ref|YP_481656.1| AbrB family transcriptional regulator [Frankia sp. CcI3] gi|86568118|gb|ABD11927.1| transcriptional regulator, AbrB family [Frankia sp. CcI3] Length=120 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/78 (68%), Positives = 68/78 (88%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+AVVD AGRIV+PK +R+ALGL PG+ V+IS YGAG+ ++P GRTARL EENGVLVA G Sbjct 43 MEAVVDQAGRIVLPKFIRDALGLLPGTKVDISPYGAGVQVVPAGRTARLVEENGVLVAAG 102 Query 61 ETTIDDEVVFGLIDSGRK 78 +T +DDE++FGLID+GR+ Sbjct 103 DTVVDDEILFGLIDAGRR 120 >gi|111219703|ref|YP_710497.1| hypothetical protein FRAAL0207 [Frankia alni ACN14a] gi|111147235|emb|CAJ58885.1| conserved hypothetical protein [Frankia alni ACN14a] Length=78 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 53/78 (68%), Positives = 68/78 (88%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+AVVD AGRIV+PK +R+ALGL PG+ V+IS YGAG+ ++P GRTARL EENGVLV+ G Sbjct 1 MEAVVDQAGRIVLPKFIRDALGLLPGTKVDISPYGAGVQVVPAGRTARLVEENGVLVSAG 60 Query 61 ETTIDDEVVFGLIDSGRK 78 +T +DD+V+FGLID+GRK Sbjct 61 DTPVDDDVLFGLIDAGRK 78 >gi|86741977|ref|YP_482377.1| AbrB family transcriptional regulator [Frankia sp. CcI3] gi|86568839|gb|ABD12648.1| transcriptional regulator, AbrB family [Frankia sp. CcI3] Length=87 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/78 (67%), Positives = 68/78 (88%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+AVVD AGRIV+PK LREALGL PG+ V+IS YGAG+ ++P GRTARL EE+GVLV+ G Sbjct 10 MEAVVDQAGRIVLPKLLREALGLFPGTKVDISPYGAGVQIVPAGRTARLVEEDGVLVSAG 69 Query 61 ETTIDDEVVFGLIDSGRK 78 +T +DD+++FGLID+GR+ Sbjct 70 DTPVDDDILFGLIDAGRR 87 >gi|288922494|ref|ZP_06416678.1| transcriptional regulator, AbrB family [Frankia sp. EUN1f] gi|288346158|gb|EFC80503.1| transcriptional regulator, AbrB family [Frankia sp. EUN1f] Length=78 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 51/78 (66%), Positives = 67/78 (86%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+AVVD AGRIV+PK +R+ALGL PG+ V+IS YGAG+ ++P GRTARL EENGVLV+ G Sbjct 1 MEAVVDQAGRIVLPKSIRDALGLLPGTKVDISPYGAGVQVVPAGRTARLVEENGVLVSAG 60 Query 61 ETTIDDEVVFGLIDSGRK 78 +T +DD+V+FGLID+ R+ Sbjct 61 DTPVDDDVLFGLIDATRR 78 >gi|119866894|ref|YP_936846.1| AbrB family transcriptional regulator [Mycobacterium sp. KMS] gi|119692983|gb|ABL90056.1| transcriptional regulator, AbrB family [Mycobacterium sp. KMS] Length=110 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/79 (65%), Positives = 65/79 (83%), Gaps = 1/79 (1%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLE-EENGVLVAT 59 M+AV+D+ GRIV+PK LR+ALGL PGS V+IS YG GLH+IP GRTARLE +E+G LVA Sbjct 32 MEAVIDSGGRIVLPKQLRDALGLTPGSKVDISAYGGGLHVIPGGRTARLERDEDGRLVAR 91 Query 60 GETTIDDEVVFGLIDSGRK 78 +T + DE++F LIDSGR+ Sbjct 92 ADTVVTDEMMFALIDSGRR 110 >gi|126433454|ref|YP_001069145.1| AbrB family transcriptional regulator [Mycobacterium sp. JLS] gi|126233254|gb|ABN96654.1| transcriptional regulator, AbrB family [Mycobacterium sp. JLS] Length=79 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/79 (64%), Positives = 65/79 (83%), Gaps = 1/79 (1%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLE-EENGVLVAT 59 M+AV+D+ GRIV+PK LR+ALGL PGS V+IS YG GLH++P GRTARLE +E+G LVA Sbjct 1 MEAVIDSGGRIVLPKQLRDALGLTPGSKVDISAYGGGLHVVPGGRTARLERDEDGRLVAR 60 Query 60 GETTIDDEVVFGLIDSGRK 78 +T + DE++F LIDSGR+ Sbjct 61 ADTVVTDEMMFALIDSGRR 79 >gi|315446132|ref|YP_004079011.1| AbrB family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315264435|gb|ADU01177.1| transcriptional regulator, AbrB family [Mycobacterium sp. Spyr1] Length=79 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/79 (57%), Positives = 64/79 (82%), Gaps = 1/79 (1%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLE-EENGVLVAT 59 M+AV+D+ GR+V+PK LR+ALGL PG+ V+IS YG GL ++P GRTARLE +++G LVA Sbjct 1 MEAVIDSGGRVVLPKQLRDALGLTPGTKVDISAYGGGLQIVPGGRTARLERDDDGRLVAQ 60 Query 60 GETTIDDEVVFGLIDSGRK 78 +T + DE++F +IDSGR+ Sbjct 61 ADTVVTDEMMFAIIDSGRR 79 >gi|145225772|ref|YP_001136450.1| AbrB family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145218258|gb|ABP47662.1| transcriptional regulator, AbrB family [Mycobacterium gilvum PYR-GCK] Length=79 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/79 (60%), Positives = 61/79 (78%), Gaps = 1/79 (1%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEE-ENGVLVAT 59 M+AVVD++GRIV+PK LR+ALGL PGS V+IS YG GL +IP RTAR+E E+G VA Sbjct 1 MEAVVDSSGRIVLPKQLRDALGLVPGSKVDISVYGGGLQVIPGDRTARIERAEDGRFVAN 60 Query 60 GETTIDDEVVFGLIDSGRK 78 +T + DE++F IDSGR+ Sbjct 61 ADTVVTDEMMFAAIDSGRR 79 >gi|336119320|ref|YP_004574097.1| hypothetical protein MLP_36800 [Microlunatus phosphovorus NM-1] gi|334687109|dbj|BAK36694.1| hypothetical protein MLP_36800 [Microlunatus phosphovorus NM-1] Length=79 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 44/79 (56%), Positives = 62/79 (79%), Gaps = 1/79 (1%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEE-NGVLVAT 59 M+A++D+ GRIV+PK LR+ALGL PG+ V+IS YG G+ + P GRTARLE E +G LVA Sbjct 1 MEAIIDSGGRIVLPKHLRDALGLTPGTKVDISPYGTGVQVTPGGRTARLEREPDGRLVAR 60 Query 60 GETTIDDEVVFGLIDSGRK 78 G+ + D++++ LIDSGR+ Sbjct 61 GDVEVTDDLMYALIDSGRR 79 >gi|306818932|ref|ZP_07452653.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|304648334|gb|EFM45638.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length=78 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/78 (48%), Positives = 52/78 (67%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+A +D AGR+V+PK R+ LGL G+ V+IS YG GL + P GR A L+ G VAT Sbjct 1 MEATLDKAGRLVIPKVFRDQLGLNSGTPVDISLYGNGLQITPGGRKASLKIVGGKPVATS 60 Query 61 ETTIDDEVVFGLIDSGRK 78 + DD++++ L+DS RK Sbjct 61 KARFDDDLMYTLMDSVRK 78 >gi|227875624|ref|ZP_03993763.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|269977132|ref|ZP_06184105.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris 28-1] gi|307700801|ref|ZP_07637826.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris FB024-16] gi|227843809|gb|EEJ53979.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|269934435|gb|EEZ90996.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris 28-1] gi|307613796|gb|EFN93040.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris FB024-16] Length=78 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/78 (48%), Positives = 51/78 (66%), Gaps = 0/78 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+A +D AGR+V+PK R+ LGL G+ V+IS YG GL + P GR A L+ G VA Sbjct 1 MEATLDKAGRLVIPKVFRDQLGLNSGTPVDISLYGNGLQITPGGRKASLKVVAGKPVAAS 60 Query 61 ETTIDDEVVFGLIDSGRK 78 E DD++++ L+DS RK Sbjct 61 EARFDDDLMYTLMDSVRK 78 >gi|158314178|ref|YP_001506686.1| hypothetical protein Franean1_2347 [Frankia sp. EAN1pec] gi|158109583|gb|ABW11780.1| conserved hypothetical protein [Frankia sp. EAN1pec] Length=51 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/48 (59%), Positives = 41/48 (86%), Gaps = 0/48 (0%) Query 31 ISRYGAGLHLIPTGRTARLEEENGVLVATGETTIDDEVVFGLIDSGRK 78 +S YGAG+ ++P GRTARL ENGVLV+ G+T +DD+++FGL+D+GR+ Sbjct 4 LSDYGAGVQVVPAGRTARLVGENGVLVSAGDTPVDDDILFGLVDAGRR 51 >gi|283852880|ref|ZP_06370141.1| transcriptional regulator, AbrB family [Desulfovibrio sp. FW1012B] gi|283571709|gb|EFC19708.1| transcriptional regulator, AbrB family [Desulfovibrio sp. FW1012B] Length=87 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/68 (37%), Positives = 41/68 (61%), Gaps = 2/68 (2%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+ +D GR+V+P+ + LGL+PGS V + G+ + + + L EE+GVL+ G Sbjct 1 METTLDEQGRVVIPEEVLRDLGLRPGSRVSVEEQGSAIVIRSISADSGLVEEDGVLLFAG 60 Query 61 ET--TIDD 66 ET ++DD Sbjct 61 ETIGSVDD 68 >gi|15609732|ref|NP_217111.1| hypothetical protein Rv2595 [Mycobacterium tuberculosis H37Rv] gi|31793779|ref|NP_856272.1| hypothetical protein Mb2626 [Mycobacterium bovis AF2122/97] gi|121638480|ref|YP_978704.1| hypothetical protein BCG_2618 [Mycobacterium bovis BCG str. Pasteur 1173P2] 72 more sequence titles Length=81 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/81 (36%), Positives = 42/81 (52%), Gaps = 3/81 (3%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+ +D AGR+V+PK +RE LGL+ VEI+ + + P L E VLVA Sbjct 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 Query 61 ET---TIDDEVVFGLIDSGRK 78 E + DE+V +D R+ Sbjct 61 ERPLPPLTDEIVRETLDRTRR 81 >gi|306804355|ref|ZP_07441023.1| antitoxin [Mycobacterium tuberculosis SUMu008] gi|308349032|gb|EFP37883.1| antitoxin [Mycobacterium tuberculosis SUMu008] Length=81 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/81 (36%), Positives = 42/81 (52%), Gaps = 3/81 (3%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+ +D AGR+V+PK +RE LGL+ VEI+ + + P L E VLVA Sbjct 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIGIEPAPTGVELVREGSVLVARP 60 Query 61 E---TTIDDEVVFGLIDSGRK 78 E + DE+V +D R+ Sbjct 61 ERPLPPLTDEIVRETLDRTRR 81 >gi|297567634|ref|YP_003686605.1| hypothetical protein Mesil_3283 [Meiothermus silvanus DSM 9946] gi|296852083|gb|ADH65097.1| hypothetical protein Mesil_3283 [Meiothermus silvanus DSM 9946] Length=83 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/65 (37%), Positives = 33/65 (51%), Gaps = 0/65 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+ +D GRI++PK LRE LGL+P +E+ L L+P L + VLV Sbjct 1 MQITLDKFGRILIPKKLRERLGLRPDDVLEVQLEDGKLTLLPQRTPPPLRRKGRVLVVES 60 Query 61 ETTID 65 T D Sbjct 61 GATAD 65 >gi|150017133|ref|YP_001309387.1| AbrB family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903598|gb|ABR34431.1| transcriptional regulator, AbrB family [Clostridium beijerinckii NCIMB 8052] Length=80 Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/67 (33%), Positives = 35/67 (53%), Gaps = 7/67 (10%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHL-------IPTGRTARLEEENGVLV 57 +D GR+V+PK +R+ LG+ G ++EI++ + L I G + E N VLV Sbjct 10 LDNLGRVVIPKEIRKVLGINEGDSIEITKVNNDIVLRKYSKGCIFCGSDKDISEFNNVLV 69 Query 58 ATGETTI 64 +G I Sbjct 70 CSGCRKI 76 >gi|57641011|ref|YP_183489.1| SpoVT/AbrB family transcription regulator [Thermococcus kodakarensis KOD1] gi|57159335|dbj|BAD85265.1| transcription regulator, SpoVT/AbrB family [Thermococcus kodakarensis KOD1] Length=81 Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust. Identities = 17/45 (38%), Positives = 28/45 (63%), Gaps = 0/45 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARL 49 V + G+IV+PK +RE LG+ PG VE+ +G + ++P + L Sbjct 6 VSSKGQIVLPKSIREKLGINPGDEVEVLDFGDEIVIVPVKKNVDL 50 >gi|94264250|ref|ZP_01288045.1| Transcriptional regulator AbrB [delta proteobacterium MLMS-1] gi|93455361|gb|EAT05565.1| Transcriptional regulator AbrB [delta proteobacterium MLMS-1] Length=60 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 19/41 (47%), Positives = 26/41 (64%), Gaps = 0/41 (0%) Query 3 AVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPT 43 V+ + G+I++PKPLRE +PG +EI G GL L PT Sbjct 4 TVLSSTGQIIIPKPLREIHQWKPGQRLEIIESGEGLMLKPT 44 >gi|336119589|ref|YP_004574366.1| hypothetical protein MLP_39490 [Microlunatus phosphovorus NM-1] gi|334687378|dbj|BAK36963.1| hypothetical protein MLP_39490 [Microlunatus phosphovorus NM-1] Length=80 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 31/72 (44%), Positives = 41/72 (57%), Gaps = 5/72 (6%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTA--RLEEENGV--L 56 MK +D AGR+V+PK LR +GL PG VEI G L + P+G LE +G+ L Sbjct 1 MKTTIDRAGRLVIPKALRLEIGLVPGP-VEIVVDGNALRIRPSGAVEFDDLELVDGIPTL 59 Query 57 VATGETTIDDEV 68 TG T D++V Sbjct 60 PRTGVPTTDNDV 71 >gi|194337517|ref|YP_002019311.1| AbrB family transcriptional regulator [Pelodictyon phaeoclathratiforme BU-1] gi|194309994|gb|ACF44694.1| transcriptional regulator, AbrB family [Pelodictyon phaeoclathratiforme BU-1] Length=68 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 16/38 (43%), Positives = 28/38 (74%), Gaps = 0/38 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIP 42 V + ++V+PK +RE +GL+ G+T+EI YG+ + L+P Sbjct 6 VSSKFQVVIPKEIREDIGLRAGTTMEIITYGSRIELVP 43 >gi|332796080|ref|YP_004457580.1| VapB-type antitoxin [Acidianus hospitalis W1] gi|332693815|gb|AEE93282.1| VapB-type antitoxin [Acidianus hospitalis W1] Length=77 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/41 (47%), Positives = 25/41 (61%), Gaps = 0/41 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGR 45 +D GRIV+PK +RE L L+ GS VEI+ G +I R Sbjct 7 IDEKGRIVIPKEIREKLNLKEGSKVEINLEKDGRIIINVKR 47 >gi|13473341|ref|NP_104908.1| hypothetical protein msl3900 [Mesorhizobium loti MAFF303099] gi|14024090|dbj|BAB50694.1| msl3900 [Mesorhizobium loti MAFF303099] Length=89 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/48 (38%), Positives = 27/48 (57%), Gaps = 0/48 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEE 52 V G++ +PKP+R+ LG+ PGS VE G+ L+P EE+ Sbjct 3 VTTKGQVTIPKPIRDHLGIGPGSEVEFVATDGGVRLVPVNENLSHEEK 50 >gi|116626049|ref|YP_828205.1| hypothetical protein Acid_7007 [Candidatus Solibacter usitatus Ellin6076] gi|116229211|gb|ABJ87920.1| hypothetical protein Acid_7007 [Candidatus Solibacter usitatus Ellin6076] Length=702 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 22/66 (34%), Positives = 38/66 (58%), Gaps = 1/66 (1%) Query 4 VVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETT 63 +V+ + +++ P+RE L L P TV + +HL+ +G T R ++ NG+L T + Sbjct 634 LVNLSNAMMMKGPIREFLPLPP-QTVSLKVNPKKVHLLVSGATPRTQQANGILTLTIPSI 692 Query 64 IDDEVV 69 +D EVV Sbjct 693 LDHEVV 698 >gi|333967653|gb|AEG34417.1| SpoVT/AbrB domain-containing protein [Thermus thermophilus SG0.5JP17-16] Length=87 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/65 (37%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTI 64 +DA GR+++P+PLR+ALGL PG+ + L L P RLEEE +A + ++ Sbjct 15 LDAQGRVLLPRPLRQALGLGPGARLVALVEDGRLVLTP---WERLEEELWAELADIQESL 71 Query 65 DDEVV 69 +E++ Sbjct 72 AEELL 76 >gi|284176098|ref|ZP_06390067.1| transcriptional regulator, AbrB family protein [Sulfolobus solfataricus 98/2] gi|261603073|gb|ACX92676.1| transcriptional regulator, AbrB family [Sulfolobus solfataricus 98/2] Length=77 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/28 (65%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEIS 32 VD GRIV+PK +RE L L+ GS VEIS Sbjct 7 VDERGRIVIPKDIRERLNLKEGSKVEIS 34 >gi|55377869|ref|YP_135719.1| transcription regulator [Haloarcula marismortui ATCC 43049] gi|55230594|gb|AAV46013.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length=109 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/60 (37%), Positives = 33/60 (55%), Gaps = 0/60 (0%) Query 3 AVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGET 62 A VD+ GRIV+P+ +RE LG+ PG+ VEI + P ++ E LVA ++ Sbjct 17 AKVDSKGRIVLPQEVREKLGISPGTEVEIHEEDGKAVVEPEDNPEQIIERMEKLVAATDS 76 >gi|227829862|ref|YP_002831641.1| transcriptional regulator, AbrB family [Sulfolobus islandicus L.S.2.15] gi|284997049|ref|YP_003418816.1| transcriptional regulator, AbrB family [Sulfolobus islandicus L.D.8.5] gi|227456309|gb|ACP34996.1| transcriptional regulator, AbrB family [Sulfolobus islandicus L.S.2.15] gi|284444944|gb|ADB86446.1| transcriptional regulator, AbrB family [Sulfolobus islandicus L.D.8.5] Length=76 Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/68 (36%), Positives = 36/68 (53%), Gaps = 19/68 (27%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTI 64 VD GRIV+PK +R+ L L+ GS VEI+ I GR +++ + TI Sbjct 7 VDERGRIVIPKEIRDKLNLKEGSKVEIN--------IENGR---------IIINVKKITI 49 Query 65 DDEVVFGL 72 DD ++G+ Sbjct 50 DD--IYGI 55 >gi|15964819|ref|NP_385172.1| hypothetical protein SMc02658 [Sinorhizobium meliloti 1021] gi|334315610|ref|YP_004548229.1| AbrB family transcriptional regulator [Sinorhizobium meliloti AK83] gi|15073998|emb|CAC45645.1| Hypothetical protein SMc02658 [Sinorhizobium meliloti 1021] gi|333810954|gb|AEG03623.1| transcriptional regulator, AbrB family [Sinorhizobium meliloti BL225C] gi|334094604|gb|AEG52615.1| transcriptional regulator, AbrB family [Sinorhizobium meliloti AK83] gi|336032075|gb|AEH78007.1| hypothetical protein SM11_chr0729 [Sinorhizobium meliloti SM11] Length=77 Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust. Identities = 16/38 (43%), Positives = 25/38 (66%), Gaps = 0/38 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGL 38 M V G++ +PK +RE LG++PGS V+ R G+G+ Sbjct 1 MATTVTIKGQVAIPKAVRELLGIKPGSKVDFRRTGSGI 38 >gi|83815403|ref|YP_444380.1| transcriptional regulator, AbrB family protein [Salinibacter ruber DSM 13855] gi|83756797|gb|ABC44910.1| transcriptional regulator, AbrB family protein [Salinibacter ruber DSM 13855] Length=98 Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/53 (44%), Positives = 32/53 (61%), Gaps = 2/53 (3%) Query 9 GRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGE 61 G+ +PKP+REALGLQPG VE +G + L G A L +G+L +G+ Sbjct 10 GQTTIPKPIREALGLQPGDRVEFILHGDRVLLRRAG--ADLSALDGMLDRSGQ 60 >gi|240169441|ref|ZP_04748100.1| hypothetical protein MkanA1_09019 [Mycobacterium kansasii ATCC 12478] Length=77 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/40 (48%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHL 40 M+ +D AGR+V+PK LRE G+ G VEIS GA + + Sbjct 1 MRTTIDKAGRLVIPKSLREQSGITAGE-VEISVEGAAIRI 39 >gi|46255255|ref|YP_006167.1| hypothetical protein TT_P0184 [Thermus thermophilus HB27] gi|46198104|gb|AAS82514.1| hypothetical protein TT_P0184 [Thermus thermophilus HB27] Length=101 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 3/48 (6%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEE 52 +DA GR+++P+PLR+ALGL PG+ + L L P RLEEE Sbjct 29 LDAQGRVLLPRPLRQALGLGPGARLVALVEDGRLVLTP---WERLEEE 73 >gi|239904706|ref|YP_002951444.1| hypothetical protein DMR_00670 [Desulfovibrio magneticus RS-1] gi|239794569|dbj|BAH73558.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length=87 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/62 (33%), Positives = 33/62 (54%), Gaps = 0/62 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 M+ +D GR+V+P+ + LGL PG+ + + + + L EE+GVL+ G Sbjct 1 METTLDEQGRVVIPQDVLHDLGLAPGARLIVEERDCTIVIRSADHDNGLVEEDGVLLFGG 60 Query 61 ET 62 ET Sbjct 61 ET 62 >gi|218671300|ref|ZP_03520970.1| hypothetical protein RetlG_06353 [Rhizobium etli GR56] Length=77 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 16/37 (44%), Positives = 23/37 (63%), Gaps = 0/37 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAG 37 M V A G++ +PKP+R+ LG+ PGS V+ R G Sbjct 1 MATTVTAKGQVTIPKPVRDMLGIVPGSKVDFHRAADG 37 >gi|229578672|ref|YP_002837070.1| AbrB family transcriptional regulator [Sulfolobus islandicus Y.G.57.14] gi|228009386|gb|ACP45148.1| transcriptional regulator, AbrB family [Sulfolobus islandicus Y.G.57.14] Length=76 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 16/28 (58%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEIS 32 VD GRIV+PK +R+ L L+ GS VEI+ Sbjct 7 VDERGRIVIPKEIRDKLNLKEGSKVEIN 34 >gi|238619284|ref|YP_002914109.1| transcriptional regulator, AbrB family [Sulfolobus islandicus M.16.4] gi|238380353|gb|ACR41441.1| transcriptional regulator, AbrB family [Sulfolobus islandicus M.16.4] Length=76 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 16/28 (58%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEIS 32 VD GRIV+PK +R+ L L+ GS VEI+ Sbjct 7 VDERGRIVIPKDIRDKLNLKEGSKVEIN 34 >gi|189500341|ref|YP_001959811.1| AbrB family transcriptional regulator [Chlorobium phaeobacteroides BS1] gi|189495782|gb|ACE04330.1| transcriptional regulator, AbrB family [Chlorobium phaeobacteroides BS1] Length=68 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 14/41 (35%), Positives = 26/41 (64%), Gaps = 0/41 (0%) Query 2 KAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIP 42 + + ++V+PK +RE+L L PG +++ +YG + LIP Sbjct 3 QVTISPKFQVVIPKKIRESLKLLPGQKMQVVQYGERIELIP 43 >gi|15920210|ref|NP_375879.1| hypothetical protein STS011 [Sulfolobus tokodaii str. 7] gi|15620992|dbj|BAB64988.1| putative antitoxin [Sulfolobus tokodaii str. 7] Length=84 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 17/43 (40%), Positives = 25/43 (59%), Gaps = 0/43 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTA 47 VD GR+++PK +RE L L+ GS VE+ G +I R + Sbjct 14 VDERGRVIIPKQIREKLNLKEGSKVEVDLEKDGKIVIKVKRIS 56 >gi|294506055|ref|YP_003570113.1| hypothetical protein SRM_00240 [Salinibacter ruber M8] gi|294342383|emb|CBH23161.1| Hypothetical protein SRM_00240 [Salinibacter ruber M8] Length=107 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/68 (34%), Positives = 37/68 (55%), Gaps = 5/68 (7%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRY-----GAGLHLIPTGRTARLEEENGV 55 M+ +D GRIV+PK +R+ LG+ G+ ++IS G + L P + L + + Sbjct 14 MEVEIDDYGRIVIPKEVRDHLGIDSGTALKISVEPEEGDGGAITLRPKEQRPPLRRKGEL 73 Query 56 LVATGETT 63 LV +GE T Sbjct 74 LVHSGELT 81 >gi|119720383|ref|YP_920878.1| AbrB family transcriptional regulator [Thermofilum pendens Hrk 5] gi|119525503|gb|ABL78875.1| transcriptional regulator, AbrB family [Thermofilum pendens Hrk 5] Length=85 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/48 (40%), Positives = 27/48 (57%), Gaps = 0/48 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTAR 48 MK VV G++V+PK +RE LGL PG+ + + G + L P R Sbjct 1 MKTVVSRKGQVVIPKEVREKLGLVPGTVLRVRVEGKRVVLEPVEEPPR 48 >gi|229821219|ref|YP_002882745.1| AbrB family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567132|gb|ACQ80983.1| transcriptional regulator, AbrB family [Beutenbergia cavernae DSM 12333] Length=73 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/75 (35%), Positives = 37/75 (50%), Gaps = 19/75 (25%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 MK V G+I +PK LRE LGL+ GS +E+ EE++G LVA Sbjct 1 MKTTVSEKGQITIPKALRERLGLRAGSVLEV------------------EEKDGQLVARR 42 Query 61 ETTIDD-EVVFGLID 74 D + V+G+I+ Sbjct 43 RVERDPVDAVYGVIE 57 >gi|229014679|ref|ZP_04171790.1| Transition state regulatory protein AbrB [Bacillus mycoides DSM 2048] gi|228746621|gb|EEL96513.1| Transition state regulatory protein AbrB [Bacillus mycoides DSM 2048] Length=92 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/68 (37%), Positives = 37/68 (55%), Gaps = 5/68 (7%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHL---IPTGRTARLEE--ENGVLVAT 59 VD GR+V+PK LR LG++ S +EI G + L P G A EE +++A Sbjct 10 VDELGRVVIPKELRNTLGIKEKSPLEIFVEGEDIVLQKYQPGGVCALTEEVSNRNIVLAN 69 Query 60 GETTIDDE 67 G+ T++ E Sbjct 70 GKITLNPE 77 >gi|325283834|ref|YP_004256375.1| transcriptional regulator, AbrB family [Deinococcus proteolyticus MRP] gi|324315643|gb|ADY26758.1| transcriptional regulator, AbrB family [Deinococcus proteolyticus MRP] Length=105 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/68 (39%), Positives = 38/68 (56%), Gaps = 3/68 (4%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLE--EENGVLVAT-GE 61 +D GR+V+PK +REALG++ G T+E + G L L R+E E+ L+ T G Sbjct 23 IDKFGRVVIPKKVREALGVREGGTLEATVSGGELTLKGESPRYRIELGEDGWPLIHTEGM 82 Query 62 TTIDDEVV 69 T D E + Sbjct 83 TAADFENI 90 >gi|163760733|ref|ZP_02167813.1| hypothetical protein HPDFL43_12793 [Hoeflea phototrophica DFL-43] gi|162282055|gb|EDQ32346.1| hypothetical protein HPDFL43_12793 [Hoeflea phototrophica DFL-43] Length=128 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/59 (36%), Positives = 32/59 (55%), Gaps = 1/59 (1%) Query 9 GRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTAR-LEEENGVLVATGETTIDD 66 GR+V+P +REALG++PG + + L + R L++E LV GE +DD Sbjct 39 GRLVIPAAMREALGVKPGDEMALEVVDGELKIKSYMAVIRELQDEFNRLVPAGEDVVDD 97 >gi|229037623|ref|ZP_04189481.1| Transcriptional regulator, AbrB [Bacillus cereus AH1271] gi|228727698|gb|EEL78816.1| Transcriptional regulator, AbrB [Bacillus cereus AH1271] Length=95 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/27 (63%), Positives = 20/27 (75%), Gaps = 0/27 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEI 31 VD GRIV+PK LRE LG+Q S +EI Sbjct 10 VDELGRIVIPKELREVLGIQIKSPLEI 36 >gi|343461182|gb|AEM39618.1| transcriptional regulator, AbrB family [Pyrolobus fumarii 1A] Length=89 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/45 (45%), Positives = 30/45 (67%), Gaps = 3/45 (6%) Query 1 MKAVV--DAAGRIVVPKPLREALGLQPGSTVEIS-RYGAGLHLIP 42 M+ VV D+ GRI++P+ +REALGL+ GS + I R + L+P Sbjct 1 MQRVVRLDSRGRILLPREVREALGLREGSKIAIRVRSDNVIELVP 45 >gi|229172721|ref|ZP_04300278.1| Transition state regulatory protein [Bacillus cereus MM3] gi|228610761|gb|EEK68026.1| Transition state regulatory protein [Bacillus cereus MM3] Length=95 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/27 (63%), Positives = 20/27 (75%), Gaps = 0/27 (0%) Query 5 VDAAGRIVVPKPLREALGLQPGSTVEI 31 VD GRIV+PK LRE LG+Q S +EI Sbjct 10 VDELGRIVIPKELREVLGIQIKSPLEI 36 >gi|15891912|ref|NP_357584.1| hypothetical protein Atu3014 [Agrobacterium tumefaciens str. C58] gi|15160411|gb|AAK90369.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length=87 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/33 (46%), Positives = 22/33 (67%), Gaps = 0/33 (0%) Query 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISR 33 M V A G++ +PK +RE LG+ PGS+V+ R Sbjct 11 MTTTVTAKGQVTIPKAVRELLGISPGSSVDFVR 43 Lambda K H 0.315 0.138 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129734191374 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40