BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0602c
Length=253
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607742|ref|NP_215116.1| two component DNA binding transcrip... 499 2e-139
gi|31791784|ref|NP_854277.1| putative two component DNA binding ... 498 3e-139
gi|289446155|ref|ZP_06435899.1| two component system transcripti... 497 6e-139
gi|289752642|ref|ZP_06512020.1| two component DNA binding transc... 497 6e-139
gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA... 489 2e-136
gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two compone... 466 1e-129
gi|308231597|ref|ZP_07663887.1| two component system transcripti... 462 3e-128
gi|1408184|gb|AAB03659.1| two component response regulator [Myco... 456 2e-126
gi|339297285|gb|AEJ49395.1| two component system transcriptional... 456 2e-126
gi|339293643|gb|AEJ45754.1| two component system transcriptional... 455 4e-126
gi|289756681|ref|ZP_06516059.1| LOW QUALITY PROTEIN: two compone... 407 6e-112
gi|167969026|ref|ZP_02551303.1| putative two component DNA bindi... 387 7e-106
gi|289760722|ref|ZP_06520100.1| two component system DNA binding... 322 4e-86
gi|170783570|ref|YP_001740087.1| CheY-like response regulator [A... 276 3e-72
gi|284041764|ref|YP_003392104.1| two component transcriptional r... 275 6e-72
gi|86741097|ref|YP_481497.1| two component transcriptional regul... 258 8e-67
gi|336179326|ref|YP_004584701.1| winged helix family two compone... 253 2e-65
gi|158315649|ref|YP_001508157.1| two component transcriptional r... 252 4e-65
gi|312197790|ref|YP_004017851.1| transcriptional regulator [Fran... 249 3e-64
gi|288918433|ref|ZP_06412785.1| two component transcriptional re... 247 1e-63
gi|111223230|ref|YP_714024.1| putative response regulator in two... 240 2e-61
gi|297160739|gb|ADI10451.1| two component transcriptional regula... 234 9e-60
gi|345014913|ref|YP_004817267.1| winged helix family two compone... 231 7e-59
gi|160902317|ref|YP_001567898.1| two component transcriptional r... 228 8e-58
gi|119715834|ref|YP_922799.1| response regulator receiver [Nocar... 227 1e-57
gi|333979455|ref|YP_004517400.1| winged helix family two compone... 227 1e-57
gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winge... 226 2e-57
gi|256371502|ref|YP_003109326.1| winged helix family two compone... 225 5e-57
gi|95928481|ref|ZP_01311228.1| two component transcriptional reg... 224 6e-57
gi|119715849|ref|YP_922814.1| response regulator receiver [Nocar... 224 6e-57
gi|83590322|ref|YP_430331.1| two component transcriptional regul... 224 1e-56
gi|340793672|ref|YP_004759135.1| two-component system response r... 223 3e-56
gi|77920671|ref|YP_358486.1| two component signal transduction r... 222 4e-56
gi|326383367|ref|ZP_08205054.1| putative OmpR family two-compone... 221 1e-55
gi|345012352|ref|YP_004814706.1| winged helix family two compone... 220 1e-55
gi|254387744|ref|ZP_05002982.1| two-component system response re... 220 2e-55
gi|271964907|ref|YP_003339103.1| response regulator receiver pro... 220 2e-55
gi|283797521|ref|ZP_06346674.1| transcriptional activator protei... 218 7e-55
gi|342858651|ref|ZP_08715306.1| TcrA protein [Mycobacterium colo... 217 1e-54
gi|304317403|ref|YP_003852548.1| transcriptional regulator [Ther... 217 1e-54
gi|114778428|ref|ZP_01453273.1| response regulator receiver doma... 217 1e-54
gi|298249466|ref|ZP_06973270.1| two component transcriptional re... 217 1e-54
gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium ... 217 1e-54
gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_0059... 217 2e-54
gi|295090875|emb|CBK76982.1| Response regulators consisting of a... 216 2e-54
gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp.... 216 2e-54
gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geo... 216 3e-54
gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. pa... 216 3e-54
gi|271961705|ref|YP_003335901.1| response regulator receiver pro... 215 4e-54
gi|119715846|ref|YP_922811.1| two component transcriptional regu... 215 4e-54
>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein
TCRA [Mycobacterium tuberculosis H37Rv]
gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
protein TcrA [Mycobacterium tuberculosis H37Ra]
gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis F11]
33 more sequence titles
Length=253
Score = 499 bits (1284), Expect = 2e-139, Method: Compositional matrix adjust.
Identities = 252/253 (99%), Positives = 253/253 (100%), Gaps = 0/253 (0%)
Query 1 VADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
+ADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA
Sbjct 1 MADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
Query 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY
Sbjct 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
Query 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL
Sbjct 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
Query 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY
Sbjct 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
Query 241 RLRKDGGRHALPR 253
RLRKDGGRHALPR
Sbjct 241 RLRKDGGRHALPR 253
>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
protein TCRA [Mycobacterium bovis AF2122/97]
gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
PROTEIN TCRA [Mycobacterium bovis AF2122/97]
gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|341600536|emb|CCC63206.1| putative two component DNA binding Transcriptional regulatory
protein tcrA [Mycobacterium bovis BCG str. Moreau RDJ]
Length=253
Score = 498 bits (1283), Expect = 3e-139, Method: Compositional matrix adjust.
Identities = 251/253 (99%), Positives = 253/253 (100%), Gaps = 0/253 (0%)
Query 1 VADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
+ADETTMRAGRGPGRACGRVSGVRILV+EDEPKMTALLARALTEEGHTVDTVADGRHAVA
Sbjct 1 MADETTMRAGRGPGRACGRVSGVRILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
Query 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY
Sbjct 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
Query 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL
Sbjct 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
Query 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY
Sbjct 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
Query 241 RLRKDGGRHALPR 253
RLRKDGGRHALPR
Sbjct 241 RLRKDGGRHALPR 253
>gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CPHL_A]
gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CPHL_A]
Length=253
Score = 497 bits (1280), Expect = 6e-139, Method: Compositional matrix adjust.
Identities = 251/253 (99%), Positives = 252/253 (99%), Gaps = 0/253 (0%)
Query 1 VADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
+ADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA
Sbjct 1 MADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
Query 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
AVD GDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY
Sbjct 61 AVDSGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
Query 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL
Sbjct 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
Query 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY
Sbjct 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
Query 241 RLRKDGGRHALPR 253
RLRKDGGRHALPR
Sbjct 241 RLRKDGGRHALPR 253
>gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein
TCRA [Mycobacterium tuberculosis EAS054]
gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein
TCRA [Mycobacterium tuberculosis EAS054]
Length=253
Score = 497 bits (1280), Expect = 6e-139, Method: Compositional matrix adjust.
Identities = 251/253 (99%), Positives = 252/253 (99%), Gaps = 0/253 (0%)
Query 1 VADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
+ADETTMRAGRGPGRACGRVSGVRILVVEDEPKMT LLARALTEEGHTVDTVADGRHAVA
Sbjct 1 MADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVA 60
Query 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY
Sbjct 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
Query 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL
Sbjct 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
Query 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY
Sbjct 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGY 240
Query 241 RLRKDGGRHALPR 253
RLRKDGGRHALPR
Sbjct 241 RLRKDGGRHALPR 253
>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
CDC1551]
gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
CDC1551]
Length=247
Score = 489 bits (1258), Expect = 2e-136, Method: Compositional matrix adjust.
Identities = 247/247 (100%), Positives = 247/247 (100%), Gaps = 0/247 (0%)
Query 7 MRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGD 66
MRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGD
Sbjct 1 MRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGD 60
Query 67 YDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFN 126
YDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFN
Sbjct 61 YDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFN 120
Query 127 LDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRR 186
LDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRR
Sbjct 121 LDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRR 180
Query 187 PGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 246
PGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG
Sbjct 181 PGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 240
Query 247 GRHALPR 253
GRHALPR
Sbjct 241 GRHALPR 247
>gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
tcrA [Mycobacterium tuberculosis T17]
gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
tcrA [Mycobacterium tuberculosis T17]
Length=237
Score = 466 bits (1199), Expect = 1e-129, Method: Compositional matrix adjust.
Identities = 235/236 (99%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 1 VADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
+ADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA
Sbjct 1 MADETTMRAGRGPGRACGRVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA 60
Query 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY
Sbjct 61 AVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDY 120
Query 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL
Sbjct 121 LTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLL 180
Query 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIR 236
EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIR
Sbjct 181 EALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIR 236
>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu001]
gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu002]
gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu003]
22 more sequence titles
Length=234
Score = 462 bits (1188), Expect = 3e-128, Method: Compositional matrix adjust.
Identities = 233/234 (99%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 20 VSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGI 79
+SGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGI
Sbjct 1 MSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGI 60
Query 80 DGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSR 139
DGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSR
Sbjct 61 DGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSR 120
Query 140 RGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLER 199
RGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLER
Sbjct 121 RGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLER 180
Query 200 CWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 253
CWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR
Sbjct 181 CWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 234
>gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis
str. Erdman]
Length=234
Score = 456 bits (1173), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 229/234 (98%), Positives = 231/234 (99%), Gaps = 0/234 (0%)
Query 20 VSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGI 79
+SGV ILVVEDEPKMTALLARALTEEGHTVDTVADGRH VA+VDGGDYDAVVLDVMLPGI
Sbjct 1 MSGVHILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGI 60
Query 80 DGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSR 139
DGFEVCARLRRQRVWTPVLMLTARGA TDRIAGLDGGADDYLTKPFNLDELFARLRALSR
Sbjct 61 DGFEVCARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSR 120
Query 140 RGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLER 199
RGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLER
Sbjct 121 RGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLER 180
Query 200 CWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 253
CWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR
Sbjct 181 CWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 234
>gi|339297285|gb|AEJ49395.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CCDC5180]
Length=231
Score = 456 bits (1172), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 230/231 (99%), Positives = 231/231 (100%), Gaps = 0/231 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF
Sbjct 1 MRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP
Sbjct 61 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD
Sbjct 121 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 253
AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR
Sbjct 181 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 231
>gi|339293643|gb|AEJ45754.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CCDC5079]
Length=231
Score = 455 bits (1170), Expect = 4e-126, Method: Compositional matrix adjust.
Identities = 229/231 (99%), Positives = 231/231 (100%), Gaps = 0/231 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF
Sbjct 1 MRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP
Sbjct 61 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
IPRPPTLEAGDLRLDP+EHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD
Sbjct 121 IPRPPTLEAGDLRLDPNEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 253
AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR
Sbjct 181 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 231
>gi|289756681|ref|ZP_06516059.1| LOW QUALITY PROTEIN: two component DNA binding transcriptional
regulatory protein TCRA [Mycobacterium tuberculosis T85]
gi|289712245|gb|EFD76257.1| LOW QUALITY PROTEIN: two component DNA binding transcriptional
regulatory protein TCRA [Mycobacterium tuberculosis T85]
Length=211
Score = 407 bits (1047), Expect = 6e-112, Method: Compositional matrix adjust.
Identities = 205/205 (100%), Positives = 205/205 (100%), Gaps = 0/205 (0%)
Query 49 VDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTD 108
VDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTD
Sbjct 7 VDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTD 66
Query 109 RIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADT 168
RIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADT
Sbjct 67 RIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADT 126
Query 169 EIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFG 228
EIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFG
Sbjct 127 EIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFG 186
Query 229 VTSLETIRGAGYRLRKDGGRHALPR 253
VTSLETIRGAGYRLRKDGGRHALPR
Sbjct 187 VTSLETIRGAGYRLRKDGGRHALPR 211
>gi|167969026|ref|ZP_02551303.1| putative two component DNA binding Transcriptional regulatory
protein tcrA [Mycobacterium tuberculosis H37Ra]
Length=195
Score = 387 bits (995), Expect = 7e-106, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)
Query 59 VAAVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGAD 118
+AAVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGAD
Sbjct 1 MAAVDGGDYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGAD 60
Query 119 DYLTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFT 178
DYLTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFT
Sbjct 61 DYLTKPFNLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFT 120
Query 179 LLEALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGA 238
LLEALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGA
Sbjct 121 LLEALIRRPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGA 180
Query 239 GYRLRKDGGRHALPR 253
GYRLRKDGGRHALPR
Sbjct 181 GYRLRKDGGRHALPR 195
>gi|289760722|ref|ZP_06520100.1| two component system DNA binding transcriptional regulatory protein
[Mycobacterium tuberculosis GM 1503]
gi|289708228|gb|EFD72244.1| two component system DNA binding transcriptional regulatory protein
[Mycobacterium tuberculosis GM 1503]
Length=161
Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 160/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 93 VWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIPRPPTLEAG 152
+WTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIPRPPTLEAG
Sbjct 1 MWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIPRPPTLEAG 60
Query 153 DLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAAYEARSNIV 212
DLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAAYEARSNIV
Sbjct 61 DLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAAYEARSNIV 120
Query 213 DVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 253
DVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR
Sbjct 121 DVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHALPR 161
>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
Length=247
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/228 (62%), Positives = 166/228 (73%), Gaps = 0/228 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
VR+LVVEDEPKM LL R L EEG+ VD AD ++A GG YDAVVLDVMLPG GF
Sbjct 17 VRVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVMLPGFPGF 76
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
E+C RLR + + PVLMLTAR AV DR+ GLD GADDYL KPF+L+EL ARLRAL+RRGP
Sbjct 77 ELCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGP 136
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ L AG+LRLD R WR + E+ L+ KE LLE + +PG V TR LLE CWD
Sbjct 137 LVSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWD 196
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGRHA 250
A+EA SN+VDV++R LR+KIDR FGV S+ET+RG GYRLR D GR A
Sbjct 197 LAFEANSNVVDVHVRALREKIDRRFGVRSIETVRGVGYRLRADAGRRA 244
>gi|284041764|ref|YP_003392104.1| two component transcriptional regulator [Conexibacter woesei
DSM 14684]
gi|283945985|gb|ADB48729.1| two component transcriptional regulator, winged helix family
[Conexibacter woesei DSM 14684]
Length=226
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 139/226 (62%), Positives = 166/226 (74%), Gaps = 0/226 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LV+EDEPK+ A + R LTE+G D G A+ YDA+VLDVMLPGIDGF
Sbjct 1 MRVLVIEDEPKLRAAIRRGLTEDGLVCDVAERGEDALWMAGSSAYDAIVLDVMLPGIDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
E C RLR VW PVLMLTAR AV DR+AGLD GADDY+TKPF+L EL ARLRAL+RRGP
Sbjct 61 ETCRRLRADGVWAPVLMLTARDAVEDRVAGLDTGADDYVTKPFSLAELSARLRALARRGP 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ RP L AGDL LDP+ RV R + EI LS +E+ LLEA +RRPG V R LL+ W
Sbjct 121 VQRPAVLAAGDLTLDPATRRVARGEVEIELSAREYALLEAFMRRPGEVLERHVLLDLAWG 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGR 248
YE RSN+VDVY+RYLR+++DRPFG ++ET+RG GYRLR DGGR
Sbjct 181 RDYENRSNVVDVYVRYLRERVDRPFGAEAIETLRGVGYRLRADGGR 226
>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length=283
Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 140/238 (59%), Positives = 163/238 (69%), Gaps = 4/238 (1%)
Query 10 GRGPGRACGRVSG----VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGG 65
GR P R C R S +R+LVVEDE + ALL R L EEG+ VD V DG AV
Sbjct 13 GRRPERFCARSSSTIRSMRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEI 72
Query 66 DYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPF 125
YDA+VLD+MLPG+DGFEVC RLR W PVLMLTARG V DRI GLD GADDYL KPF
Sbjct 73 GYDAIVLDLMLPGLDGFEVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPF 132
Query 126 NLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIR 185
+ EL ARLRAL RRG + RP L GDLRLDP+EHRV RA + + LS KEF LL L+R
Sbjct 133 SFGELTARLRALVRRGAVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMR 192
Query 186 RPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLR 243
P V TR +++ WD A++ SNIVD Y+RY+R KID P G + +ET+RG GYRLR
Sbjct 193 HPDEVLTRTYIVDHVWDFAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLR 250
>gi|336179326|ref|YP_004584701.1| winged helix family two component transcriptional regulator [Frankia
symbiont of Datisca glomerata]
gi|334860306|gb|AEH10780.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length=229
Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/220 (61%), Positives = 154/220 (70%), Gaps = 0/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDE + LL R LTEEG VD VADG AV YD +VLD+MLPG+DGF
Sbjct 1 MRVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVC RLR W PVLML+AR VTDR+ GLD GADDYL KPF+ DELFAR+RAL RRG
Sbjct 61 EVCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRGT 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L+ LRLDP+ R T + LS KEF LLE L+R PG V +R +LE WD
Sbjct 121 HERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
AY+ SN+VD YI YLR KIDRPFG++ LET+RGAGYRL
Sbjct 181 FAYDGTSNVVDQYIAYLRRKIDRPFGISQLETVRGAGYRL 220
>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length=235
Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/221 (60%), Positives = 158/221 (72%), Gaps = 0/221 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDE + LL R LTE G+ VD V DG AV YDA+VLD+MLPG+DGF
Sbjct 1 MRVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVC RLR R W+P+LMLTARG V DRI GLD GADDYL KPF+ EL ARLRAL RRG
Sbjct 61 EVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ RP TL GD+ LDP+ V RA + LS KEF+LLE L+RRPG V TR+ +L+ WD
Sbjct 121 VERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLR 243
Y+ SN+VD Y+RYLR KID G++ +ET+RGAGYRLR
Sbjct 181 LGYDGTSNVVDQYVRYLRRKIDPADGLSRIETVRGAGYRLR 221
>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length=229
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/221 (60%), Positives = 153/221 (70%), Gaps = 0/221 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDEP+ ALL R L EEG VD VADG AV YD +VLD+MLP +DGF
Sbjct 1 MRVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVC RLR W PVLML+ARG V DR+ GLD GADDYL KPF+ DEL ARLRAL RRG
Sbjct 61 EVCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L+ LRLDP+ R E+ LS KEF LLE L+R PG V +R +L+ WD
Sbjct 121 QERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLR 243
AY+ SN+VD Y+ YLR KID+PFGV LET+RGAGYRLR
Sbjct 181 LAYDRNSNVVDQYVAYLRRKIDKPFGVAQLETVRGAGYRLR 221
>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
Length=227
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/221 (60%), Positives = 153/221 (70%), Gaps = 0/221 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDE + ALL R L EEG VD VADG AV YD +VLD+MLP +DGF
Sbjct 1 MRVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVC RLR W+PVLML+ARGAVTDR+ GLD GADDYL KPF+ DEL AR+RAL RRG
Sbjct 61 EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP LE LRLDP+ V R + LS KEF LLE L+R PG R +LE WD
Sbjct 121 HERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLR 243
AY+ SN+VD Y+ YLR KID+PFG + LET+RGAGYRLR
Sbjct 181 FAYDGTSNVVDQYVAYLRRKIDKPFGTSQLETVRGAGYRLR 221
>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
[Frankia alni ACN14a]
gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
[Frankia alni ACN14a]
Length=246
Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/220 (60%), Positives = 150/220 (69%), Gaps = 0/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDE + A+L R L EEG+ VD V DG AV YDA+VLD+MLPGIDGF
Sbjct 1 MRVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVC RLR W PVLMLTAR V DRI GLD GADDYL KPF+ EL ARLRAL RRG
Sbjct 61 EVCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ RP L AG + LDP+ HRVWR + LS KEF LL L+R P V TR + E WD
Sbjct 121 VHRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
A++A SNIVD Y+RYLR KID P + +ET+RG GYRL
Sbjct 181 DAFDATSNIVDQYVRYLRRKIDLPPAPSLIETVRGVGYRL 220
>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
protein [Streptomyces bingchenggensis BCW-1]
Length=225
Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/225 (54%), Positives = 155/225 (69%), Gaps = 0/225 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVED+ ++ LL L +EG TV+T DGR +A G +Y A+VLDVMLPG+ G+
Sbjct 1 MRILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
+VC+RLR VWTP+LMLTA+ D GLD GADDYLTKPF+ L AR+RAL RRG
Sbjct 61 QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ RP LE GDLRL+P+ R + I L+ KEF +LE L RR G V ++ +++ WD
Sbjct 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGG 247
AYE +N+V+VYIR LR KID P+G ++ TIRGAGY L +DGG
Sbjct 181 TAYEGGANLVEVYIRTLRRKIDVPYGRQAIRTIRGAGYLLARDGG 225
>gi|345014913|ref|YP_004817267.1| winged helix family two component transcriptional regulator [Streptomyces
violaceusniger Tu 4113]
gi|344041262|gb|AEM86987.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length=225
Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/225 (52%), Positives = 155/225 (69%), Gaps = 0/225 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVED+ ++ LL L +EG T++T ADG +A G Y A+VLDVMLPG G+
Sbjct 1 MRILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGCSGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
++C+RLR + WTP+LMLTA+ D GLD GADDYLTKPF+ L AR+RAL RRG
Sbjct 61 QLCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRRGG 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ RP LE GDLRL+P+ R E+ L+ KEF +LE L RR G V +++++++ WD
Sbjct 121 LDRPDVLELGDLRLEPAALACARGKEEVTLTAKEFAVLEYLARRAGQVVSKSEIVQSVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGG 247
AY+ +N+V+VYIR LR KID P+G S+ TIRGAGY L +DGG
Sbjct 181 TAYDGGANLVEVYIRSLRRKIDVPYGRQSIRTIRGAGYLLARDGG 225
>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
[Petrotoga mobilis SJ95]
Length=222
Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 146/220 (67%), Gaps = 1/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
++ILVVEDE K+ ++ R LTEEG+ +D V DG A YD ++LD+MLP DG
Sbjct 1 MKILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGI 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
VC +R++ + TP+LMLTA+ +V DR+ GLD GADDYL KPF+ DELFAR+R+L RR
Sbjct 61 TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
R P L+ GDL L+ VW + +++L+ KE+ +LE +R P IV TR L E+ WD
Sbjct 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
+E SN++DVYIR LR KI G LET+RGAGYRL
Sbjct 181 IDFEGNSNVIDVYIRRLRKKIGDKEG-KILETVRGAGYRL 219
>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
Length=226
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/221 (53%), Positives = 146/221 (67%), Gaps = 0/221 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDE ++ A L L EG VD ADG A+ + YD ++LDVMLP ++G+
Sbjct 1 MRVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EVC RLR + VWTP+LMLTAR D I GLD GADDY+TKPF+ D L AR+R+L RRG
Sbjct 61 EVCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP LE GDLR DP+ V RA I L+ +E L+ +RR G V T+ ++LE WD
Sbjct 121 TERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAFFMRRAGDVLTKLEILENVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLR 243
A+E NIV+VY+ LR K+D+PFG LET RG GYRLR
Sbjct 181 FAFEGDPNIVEVYVGRLRRKVDKPFGCADLETFRGTGYRLR 221
>gi|333979455|ref|YP_004517400.1| winged helix family two component transcriptional regulator [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333822936|gb|AEG15599.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum kuznetsovii DSM 6115]
Length=226
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/224 (55%), Positives = 146/224 (66%), Gaps = 0/224 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVEDE + LAR L EEG+ D DG +A + DYD ++LD+MLP +DG
Sbjct 1 MRILVVEDETTLANTLARCLREEGYATDIAYDGEEGIAFAETVDYDLIILDLMLPRLDGM 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV RLR +R+ TPVLMLTAR V D++ GLD GADDYLTKPF L EL AR+RAL RR
Sbjct 61 EVIRRLRNERIDTPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ L+ GDL +D RV R D EI L++KE LLE L+R P V TR Q+ E WD
Sbjct 121 ANKSTVLQVGDLVMDTVSRRVRRGDREINLTNKEHALLEYLMRNPNRVLTRTQIAEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 246
+ SNIVDVYIRYLR KID F L T+RG+GY LR+ G
Sbjct 181 YDFSGMSNIVDVYIRYLRRKIDDNFEPKLLYTVRGSGYCLREPG 224
>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing
response regulator [Sanguibacter keddieii DSM 10542]
gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length=225
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/220 (52%), Positives = 152/220 (70%), Gaps = 0/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVV+DE ++ + R L EG VD A+G + YDA+VLD+M+PG++G+
Sbjct 1 MRILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
VC RLR WTP+LMLTA+ D++ LD GADD+L+KPF+ L ARLR+L RRG
Sbjct 61 TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP LEAGDL+LDP+ RV R D EI L+ +EF +LE LIR G V ++ Q+L+ WD
Sbjct 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
+E NIV+VY+R+LR+K+DRPFG S+ET+RGAGYRL
Sbjct 181 GDFEGDPNIVEVYVRHLRNKVDRPFGRASIETLRGAGYRL 220
>gi|256371502|ref|YP_003109326.1| winged helix family two component transcriptional regulator [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family
[Acidimicrobium ferrooxidans DSM 10331]
Length=236
Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/226 (50%), Positives = 145/226 (65%), Gaps = 0/226 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+L+V+DE + A L R L+ EG VDT +DG + YD +VLD+MLPG++GF
Sbjct 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
+ LR +R WTP+LMLTA+ D LD GADD L KPF+ L AR+RAL RR
Sbjct 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
PP L+AGDL LDP+ HRV R + I L+ +EF+ LE L+R G V + ++ WD
Sbjct 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGR 248
+E SNIV+VYI YLR KID PFG ++ TIRG GYRL +DGGR
Sbjct 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEEDGGR 226
>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
Length=223
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/223 (49%), Positives = 144/223 (65%), Gaps = 0/223 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
++ILVVEDE K+ + + R L EE TVD A+G + + YD +++D+MLP DG
Sbjct 1 MKILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGL 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
V LR + V TPVL LTA+ +V D +AGLD G+DDYLTKPF EL AR++AL RRG
Sbjct 61 TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
R + DLRLDP H+VWRAD EI L+ KE+ LLE +R P V TR + E WD
Sbjct 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245
+++ +NI+DVY+ YLR KID+ + + TIRG GY L++D
Sbjct 181 YTFDSFTNIIDVYVNYLRKKIDKDYSKKLIHTIRGVGYVLKED 223
>gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614]
Length=225
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 149/224 (67%), Gaps = 0/224 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+L+VEDE ++ ++R L EG VDT+ DG +A DYD +VLD+MLP ++G+
Sbjct 1 MRVLMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPSMNGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
+VC LR+ VW P+LMLTA+ D LD GADDYLTKPF+ L ARLRAL RRG
Sbjct 61 DVCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L GDL LDP+ V R TEI L+ +EF LL L+R PG V ++ +++ WD
Sbjct 121 PKRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 246
Y+ N+V+VY+ YLR KID+PFG T+++T+RGAGYRL DG
Sbjct 181 LNYDGDENVVEVYVGYLRRKIDQPFGTTTIQTMRGAGYRLLGDG 224
>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
[Moorella thermoacetica ATCC 39073]
Length=240
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/224 (55%), Positives = 146/224 (66%), Gaps = 0/224 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVEDE + LAR L EEG+ D DG VA + YD ++LD+MLP +DG
Sbjct 15 MRILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGM 74
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV RLR +R+ TPVLMLTAR V D++ GLD GADDYLTKPF L EL AR+RAL RR
Sbjct 75 EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ L+ GDL +D +V R D EI L++KE+ LLE L+R P V TR Q+ E WD
Sbjct 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 246
+ SNIVDVYIRYLR KID F L TIRG+GY LR+ G
Sbjct 195 YDFSGMSNIVDVYIRYLRRKIDDNFEPKLLYTIRGSGYCLREPG 238
>gi|340793672|ref|YP_004759135.1| two-component system response regulator [Corynebacterium variabile
DSM 44702]
gi|340533582|gb|AEK36062.1| two-component system response regulator [Corynebacterium variabile
DSM 44702]
Length=255
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/229 (49%), Positives = 154/229 (68%), Gaps = 0/229 (0%)
Query 19 RVSGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPG 78
R++ +RILVV+DE ++ + R L EG VD V DG +A DYDA+VLDVM+PG
Sbjct 27 RLTAMRILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMPG 86
Query 79 IDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALS 138
++G+ VC LR WTPVL LTA+ D + GLD G DD+LTKPF+ L ARLRA+
Sbjct 87 MNGYRVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMV 146
Query 139 RRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLE 198
RRG RP L AGDLRLDP+ + +R+D EI L+ +E +L+ L+R G V T+ ++L
Sbjct 147 RRGSRGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLA 206
Query 199 RCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGG 247
W +++ +NIV+VYI +LR K+DRPFG ++ T+RGAGYRL ++GG
Sbjct 207 NVWGGSFDGDTNIVEVYIGHLRAKVDRPFGRAAIGTVRGAGYRLDRNGG 255
>gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family
[Pelobacter carbinolicus DSM 2380]
Length=223
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/222 (49%), Positives = 143/222 (65%), Gaps = 0/222 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDE K+ + + R L EE TVD DG + + YD +++D+MLP DG
Sbjct 1 MRVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGL 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV LR + V TPVL LTA+ AV D ++GLD G+DDYLTKPF EL AR++AL RR
Sbjct 61 EVIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
R + DLRLDP H+VWR+D EI L+ KE+ LLE +R P V TRA + E WD
Sbjct 121 KDRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRK 244
+++ +NI+DVY+ YLR K+DR F + T+RG GY L++
Sbjct 181 YTFDSFTNIIDVYVNYLRKKVDRDFDKKLIHTVRGVGYVLKE 222
>gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia
neofelifaecis NRRL B-59395]
gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia
neofelifaecis NRRL B-59395]
Length=224
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/224 (50%), Positives = 145/224 (65%), Gaps = 0/224 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+L+V+D+P + + R L EG VDT DG + +D VVLD+M+PG +G+
Sbjct 1 MRVLLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIMMPGRNGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV LRR +VWTPVLMLTA+ D+ D GADDYLTKP++ L ARLRAL+RRG
Sbjct 61 EVVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP + AG L LDPS H V R DTE+ L+ +EF LLE L+R G T+ Q+++ WD
Sbjct 121 PERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 246
Y N+V+VYI YLR +ID PFG S++T+RG GYRL DG
Sbjct 181 VNYTGDENVVEVYISYLRKRIDAPFGCKSIQTVRGVGYRLDDDG 224
>gi|345012352|ref|YP_004814706.1| winged helix family two component transcriptional regulator [Streptomyces
violaceusniger Tu 4113]
gi|344038701|gb|AEM84426.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length=225
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/224 (53%), Positives = 145/224 (65%), Gaps = 0/224 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVED P + L LT EG VD DG + V YDA+VLD+MLP ++G+
Sbjct 1 MRVLVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIMLPRVNGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
+VC RLR + WTPVLMLTA+ D GLD GADDYLTKPF+ L ARL AL RRG
Sbjct 61 DVCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGH 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
IPRPP L GDL LDP RA T I L+ +EF+LLE L+R G V ++ ++L W
Sbjct 121 IPRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWA 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 246
++ N+V+VYI YLR KID PF V S+ET+RGAGYRL DG
Sbjct 181 EHFDLDPNVVEVYIGYLRRKIDTPFRVRSIETVRGAGYRLAADG 224
>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
[Streptomyces clavuligerus ATCC 27064]
gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
protein [Streptomyces clavuligerus ATCC 27064]
gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
[Streptomyces clavuligerus ATCC 27064]
Length=226
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/224 (52%), Positives = 148/224 (67%), Gaps = 1/224 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVED+P++ LL R L EG VD DG HA+ +YDA+VLDVMLPG++G
Sbjct 1 MRILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGL 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
VCARLR R+WTPVLMLTAR D GLD GADDY+TKPF+ L ARLRAL RRG
Sbjct 61 RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RPP +E GDLR+DP+ R R+ T + L+ +EF +L L + G V + ++L+ W
Sbjct 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVW- 179
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDG 246
+E N+V+VY+ LR KID PFG ++ T+RGAGYRL G
Sbjct 180 GDFEGDVNVVEVYVSALRRKIDTPFGRRTIHTVRGAGYRLEDTG 223
>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
Length=224
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/225 (52%), Positives = 148/225 (66%), Gaps = 1/225 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+LVVEDE +M A L R L EG VD DG + GDYD VVLD+MLP + G+
Sbjct 1 MRVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
VC +LR + W P+LML+A+ D GLD GADDYLTKPF+ L ARLRAL RRG
Sbjct 61 NVCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L AGDL LDP+ RV R +T + L+ +EF LLE L+RR V ++ ++LE WD
Sbjct 121 NRRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGG 247
++ N+V+VY+ YLR KID PF T+L+T+RGAGYRL DGG
Sbjct 181 -TFDTDPNVVEVYVGYLRRKIDVPFSRTALQTVRGAGYRLAGDGG 224
>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
Length=223
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/223 (52%), Positives = 142/223 (64%), Gaps = 0/223 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RIL EDEP + + + L EG VD DGR A+ +D DYD V+LD+M+PGIDG
Sbjct 1 MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGL 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
V LR + PV++LTAR AV DR+ GLD GADDYLTKPF EL AR+RAL RR
Sbjct 61 TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ T DL ++ S +V R EI LS +EF LLE+LIR G + +R QL + WD
Sbjct 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245
+E SNIVDVYIRYLR KID PF + T+RGAGY LR++
Sbjct 181 FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTLREE 223
>gi|342858651|ref|ZP_08715306.1| TcrA protein [Mycobacterium colombiense CECT 3035]
gi|342134355|gb|EGT87535.1| TcrA protein [Mycobacterium colombiense CECT 3035]
Length=222
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/220 (50%), Positives = 144/220 (66%), Gaps = 0/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+L+VEDEP+++A + R L EG V V +G + +D ++LD+MLPG+ G+
Sbjct 1 MRVLLVEDEPRLSATVVRGLKAEGFVVMAVGNGVDGLREATENGFDVIILDIMLPGLSGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV RLR VWTPVLMLTA+ D D GADDYLTKPF+ L ARLRAL RRG
Sbjct 61 EVLRRLRSHNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALIRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L+AG L LDP+ H V R T I L+ +E+ +LE L+R +V T+A++L+ WD
Sbjct 121 PARPVVLKAGTLTLDPARHTVKRGSTPIALTPREYGVLEFLMRNKDVVVTKAEILQNVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
A + N+V+VY+ YLR KID PFG ++ETIRG GYRL
Sbjct 181 AHFHGPDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220
>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length=225
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/222 (48%), Positives = 148/222 (67%), Gaps = 0/222 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVV+DEP +T LL +AL EEG++VD +G + YD ++LD+MLP IDG
Sbjct 1 MRILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGI 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
++ LR + TP+LMLTA+ A+ D++ GLD GADDY+TKPF L EL AR+RAL RR
Sbjct 61 QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ P L+ DL ++ H V R I L+ KE++LLE ++R G V TR+Q+++ W
Sbjct 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRK 244
++ SNI+DVYIRYLR KID F + ++TIRG+GY L++
Sbjct 181 YEFDGLSNIIDVYIRYLRKKIDDNFDIKLIQTIRGSGYCLKE 222
>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like) [Mariprofundus
ferrooxydans PV-1]
gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like) [Mariprofundus
ferrooxydans PV-1]
Length=227
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/223 (50%), Positives = 142/223 (64%), Gaps = 0/223 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
++ILVVEDE ++ + + L EEGH VD DG + DYD ++LD+MLP +G
Sbjct 1 MKILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGL 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
VC LR V TPVLMLTAR +V D++ GLD GADDYL KPF +EL AR+RAL RR
Sbjct 61 VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ P L+ DL LDP RV R + IRL+ KE+ LLE L+R PG V +R + E WD
Sbjct 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245
++ SN++DVYI +LR KID+ F V+ L T+RG GY L D
Sbjct 181 MNFDPESNVIDVYISHLRSKIDKGFDVSLLHTLRGQGYLLTDD 223
>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length=233
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/222 (53%), Positives = 144/222 (65%), Gaps = 2/222 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+ ILVVEDE K+ LL R L EE HTV+ DG + + G YDAVVLDVMLP +DGF
Sbjct 1 MHILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGF 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR-- 140
E+C R+R V +PVLMLTARG+V DR+AGL+ GADDYL KPF ++EL AR+ AL RR
Sbjct 61 EICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120
Query 141 GPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERC 200
L A DL LD H R + I L+ KEF LLE L+R PG TR Q+ +
Sbjct 121 RTFEVATQLRADDLILDLVRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDAV 180
Query 201 WDAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
W EA SN+VD+YI YLRDKID+ F ++T+RG GY+L
Sbjct 181 WRYDLEALSNVVDIYIHYLRDKIDQGFTRPLIKTVRGIGYKL 222
>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
Length=222
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/220 (51%), Positives = 142/220 (65%), Gaps = 0/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+L+VEDEP++ A +AR L EG V TV +G +A +D V+LD+MLPG G+
Sbjct 1 MRVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV R+R VWTPVLMLTA+ D D GADDYLTKPF+ L ARLRAL RRG
Sbjct 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L AG L LDP+ H V R T I L+ +E+ +LE L+R +V T+A +L WD
Sbjct 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
A + N+V+VY+ YLR KID PFG ++ETIRG GYRL
Sbjct 181 AHHHGPDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220
>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
Length=224
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/223 (48%), Positives = 145/223 (66%), Gaps = 0/223 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+L+VEDE + ++L + L +E +T D +G A+ ++ DYD ++LD+MLPGIDG
Sbjct 1 MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGIDGL 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
E+ ++R + TPVL LTAR + DR+ GLD GADDYL KPF+ +EL AR+R + RR P
Sbjct 61 ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
L GDL LD V RAD +I LS KEF +LE ++R IV +R Q+ + W+
Sbjct 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245
+E SN+VDVYIRYLR KID FG + T+RG GY LRK+
Sbjct 181 YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVLRKE 223
>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain
and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum
K10]
Length=223
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/223 (51%), Positives = 141/223 (64%), Gaps = 0/223 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RIL EDEP + + + L EG VD DGR + +D DYD V+LD+M+PGIDG
Sbjct 1 MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGL 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
V LR + PV++LTAR AV DR+ GLD GADDYLTKPF EL AR+RAL RR
Sbjct 61 TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
+ T DL ++ S +V R EI LS +EF LLE+LIR G + +R QL + WD
Sbjct 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245
+E SNIVDVYIRYLR KID PF + T+RGAGY LR++
Sbjct 181 FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTLREE 223
>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
Length=222
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/220 (51%), Positives = 142/220 (65%), Gaps = 0/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+++L+VEDEP++ A +AR L EG V TV +G +A +D V+LD+MLPG G+
Sbjct 1 MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV R+R VWTPVLMLTA+ D D GADDYLTKPF+ L ARLRAL RRG
Sbjct 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L AG L LDP+ H V R T I L+ +E+ +LE L+R +V T+A +L WD
Sbjct 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
A + N+V+VY+ YLR KID PFG ++ETIRG GYRL
Sbjct 181 AHHHGPDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220
>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter sulfurreducens
KN400]
Length=224
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/224 (49%), Positives = 146/224 (66%), Gaps = 2/224 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVA-AVDGGDYDAVVLDVMLPGIDG 81
+++LVVEDE K+++ + R L EE + VD +G + A+D G YD +VLDVMLP DG
Sbjct 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKG-YDLIVLDVMLPKKDG 59
Query 82 FEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRG 141
V LR ++ TPVLMLTA+ +V D +AGLD G+DDYLTKPF EL AR+RAL RR
Sbjct 60 LSVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRS 119
Query 142 PIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCW 201
R + DLRLDP H+VWR D EI L+ KE++LLE +R P V TR + E W
Sbjct 120 EQDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVW 179
Query 202 DAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245
D +++ +NI+DVY+ YLR KIDR + T+RG GY L+++
Sbjct 180 DYTFDSFTNIIDVYVNYLRKKIDRESDKKLIHTVRGVGYILKEE 223
>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336461546|gb|EGO40413.1| response regulator with CheY-like receiver domain-containing
protein [Mycobacterium avium subsp. paratuberculosis S397]
Length=222
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/220 (51%), Positives = 142/220 (65%), Gaps = 0/220 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+++L+VEDEP++ A +AR L EG V TV +G +A +D V+LD+MLPG G+
Sbjct 1 MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
EV R+R VWTPVLMLTA+ D D GADDYLTKPF+ L ARLRAL RRG
Sbjct 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP L AG L LDP+ H V R T I L+ +E+ +LE L+R +V T+A +L WD
Sbjct 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242
A + N+V+VY+ YLR KID PFG ++ETIRG GYRL
Sbjct 181 AHHHGPDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220
>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum
DSM 43021]
Length=222
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/222 (51%), Positives = 145/222 (66%), Gaps = 0/222 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+R+L+VEDE ++ LL L EG VD DGR + YD +VLDVMLP ++G+
Sbjct 1 MRVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGY 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
VCARLR WTP+LMLTA+ V D LD GADD+L+KPF+ L ARLRAL RRG
Sbjct 61 TVCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGG 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP ++ GDL +DP+ R R + EI L+ KEF +L L RRPG V ++++LL + WD
Sbjct 121 RARPVSITVGDLTVDPAGLRCRRGEVEIALTPKEFAVLHGLARRPGEVVSKSELLAQAWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRK 244
+Y+ NIV+VYI LR KID PFG +SL T+RGAGYRL
Sbjct 181 FSYDGDPNIVEVYISALRRKIDSPFGRSSLVTVRGAGYRLES 222
>gi|119715846|ref|YP_922811.1| two component transcriptional regulator [Nocardioides sp. JS614]
gi|119536507|gb|ABL81124.1| two component transcriptional regulator, winged helix family
[Nocardioides sp. JS614]
Length=232
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/223 (50%), Positives = 143/223 (65%), Gaps = 0/223 (0%)
Query 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82
+RILVVED+ ++ A L R L EGH VD G YDA+V+DVMLPG+ G
Sbjct 1 MRILVVEDDKQLAAALRRGLESEGHAVDVALTGTDGEWYASENTYDAMVVDVMLPGLTGD 60
Query 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142
+CAR R WTP+LMLTAR LD GADD+L+KPF+ L ARLRAL RR
Sbjct 61 ALCARRRESGDWTPILMLTARSGPEQEARALDAGADDFLSKPFSFMVLTARLRALLRRDS 120
Query 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202
RP LE GDLRLDP+ HRVWR DT I L+ K+F+LLE ++R + +++ +LE WD
Sbjct 121 RERPTVLEVGDLRLDPALHRVWRGDTSIDLTPKQFSLLEFMMRHADHILSKSMILEHVWD 180
Query 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245
+Y+ NIV+VY+R LR +ID PF +SL+T+R GYR+ D
Sbjct 181 FSYDGHPNIVEVYVRQLRQRIDEPFQRSSLQTVRLVGYRVVDD 223
Lambda K H
0.323 0.141 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 368391130380
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40