BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0608
Length=81
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycoba... 161 4e-38
gi|120402182|ref|YP_952011.1| transcription factor [Mycobacteriu... 111 4e-23
gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [R... 59.7 1e-07
gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcrip... 59.3 2e-07
gi|293980660|ref|YP_003543418.1| hypothetical protein SJA_P2-001... 59.3 2e-07
gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodo... 58.9 2e-07
gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudom... 58.5 3e-07
gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [F... 58.2 4e-07
gi|83592605|ref|YP_426357.1| transcription factor [Rhodospirillu... 57.4 8e-07
gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomo... 55.1 4e-06
gi|116254472|ref|YP_770308.1| hypothetical protein pRL100006 [Rh... 54.7 5e-06
gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeo... 53.5 1e-05
gi|334321235|ref|YP_004557775.1| protein transcription factor [S... 50.8 6e-05
gi|340776554|ref|ZP_08696497.1| protein transcription factor [Ac... 47.8 6e-04
gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycoba... 44.7 0.004
gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcrip... 43.5 0.011
gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [J... 43.1 0.014
gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcript... 42.7 0.017
gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription... 42.7 0.020
gi|320449625|ref|YP_004201721.1| hypothetical protein TSC_c05400... 42.4 0.025
gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription... 41.6 0.038
gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcrip... 41.6 0.044
gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap... 40.8 0.068
gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomo... 40.8 0.074
gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 ... 40.4 0.084
gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobact... 40.4 0.096
gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcrip... 40.0 0.12
gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobac... 40.0 0.12
gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sino... 39.7 0.14
gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [N... 39.7 0.15
gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription f... 39.7 0.17
gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541... 38.9 0.28
gi|167648432|ref|YP_001686095.1| transcription factor [Caulobact... 37.4 0.65
gi|256824142|ref|YP_003148102.1| Rv0623-like transcription facto... 36.6 1.3
gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tubercu... 36.6 1.4
gi|256826048|ref|YP_003150008.1| Rv0623-like transcription facto... 36.2 1.5
gi|344341725|ref|ZP_08772641.1| Rv0623 family protein transcript... 36.2 1.6
gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [... 36.2 1.6
gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycoba... 36.2 1.6
gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [... 36.2 1.9
gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcript... 35.8 2.2
gi|168013114|ref|XP_001759246.1| predicted protein [Physcomitrel... 35.0 3.3
gi|337266993|ref|YP_004611048.1| protein transcription factor [M... 34.7 4.9
gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberc... 34.3 5.9
gi|145223549|ref|YP_001134227.1| AMP-dependent synthetase and li... 34.3 5.9
gi|296140932|ref|YP_003648175.1| class III aminotransferase [Tsu... 33.9 9.1
>gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycobacterium tuberculosis H37Rv]
gi|15840008|ref|NP_335045.1| hypothetical protein MT0637 [Mycobacterium tuberculosis CDC1551]
gi|31791790|ref|NP_854283.1| hypothetical protein Mb0624 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=81
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM
Sbjct 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
Query 61 SPEAKRLDHDALLYDERGLPA 81
SPEAKRLDHDALLYDERGLPA
Sbjct 61 SPEAKRLDHDALLYDERGLPA 81
>gi|120402182|ref|YP_952011.1| transcription factor [Mycobacterium vanbaalenii PYR-1]
gi|119955000|gb|ABM12005.1| Rv0623 family protein transcription factor [Mycobacterium vanbaalenii
PYR-1]
Length=81
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/81 (67%), Positives = 65/81 (81%), Gaps = 0/81 (0%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
MALNIKD VH AVKQ+A++TGESQA+AVATAV ERL+R++ DDLA RLLA+G +TA RM
Sbjct 1 MALNIKDEKVHDAVKQLARLTGESQAQAVATAVQERLSRVQQDDLAERLLALGRRTAQRM 60
Query 61 SPEAKRLDHDALLYDERGLPA 81
+ K LDH LLYD+ GLP
Sbjct 61 TSATKNLDHGELLYDDAGLPG 81
>gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB5]
gi|91682381|gb|ABE38683.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB5]
Length=83
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/84 (45%), Positives = 50/84 (60%), Gaps = 6/84 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR----SDDLAARLLAIGHKT 56
M LNIK+ H+ ++A++TGES AV A+ E+LAR R +D +A RLL IG +
Sbjct 1 MHLNIKNDEAHRLASELAELTGESLTAAVTAALREQLARERRRRQTDKIAERLLKIGDRY 60
Query 57 ASRMSPEAKRLDHDALLYDERGLP 80
A+ P+ R D L YDE GLP
Sbjct 61 AA--LPDTGRTPDDVLGYDEHGLP 82
>gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris TIE-1]
gi|192286729|gb|ACF03110.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris TIE-1]
Length=83
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (43%), Positives = 50/84 (60%), Gaps = 6/84 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT 56
M LNIK+ HQ ++A++TGES AV A+ E+LA R ++D +A RLL IG +
Sbjct 1 MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY 60
Query 57 ASRMSPEAKRLDHDALLYDERGLP 80
A+ P+ R + L YDE GLP
Sbjct 61 AA--VPDTGRTPDEILGYDENGLP 82
>gi|293980660|ref|YP_003543418.1| hypothetical protein SJA_P2-00160 [Sphingobium japonicum UT26S]
gi|292677677|dbj|BAI99192.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=82
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (43%), Positives = 48/85 (57%), Gaps = 9/85 (10%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL---RSDDLAARLLAIGHKTA 57
M+LN+KDP H+ + IA+ TG+S R V A+ ER AR+ +S A LL I A
Sbjct 1 MSLNVKDPEAHRLAQAIAQATGQSMTRVVTEALRERFARIERQKSKASVAELLTI----A 56
Query 58 SRMSPEAKR--LDHDALLYDERGLP 80
R + KR +DH L YD+ GLP
Sbjct 57 DRAATHVKRPYVDHAELFYDDNGLP 81
>gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodopseudomonas palustris CGA009]
gi|316935648|ref|YP_004110630.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
gi|39651059|emb|CAE29582.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|315603362|gb|ADU45897.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris DX-1]
Length=83
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (43%), Positives = 50/85 (59%), Gaps = 6/85 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT 56
M LNIK+ HQ ++A++TGES AV A+ E+LA R ++D +A RLL IG +
Sbjct 1 MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY 60
Query 57 ASRMSPEAKRLDHDALLYDERGLPA 81
A+ P+ R + L YDE GLP
Sbjct 61 AA--LPDTGRTPDEILGYDENGLPT 83
>gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudomonas palustris BisA53]
gi|115520006|gb|ABJ07990.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris BisA53]
Length=86
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/84 (45%), Positives = 50/84 (60%), Gaps = 6/84 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR----SDDLAARLLAIGHKT 56
M LNIK+ H+ ++A++TGES AV A+ E+LAR R SD +A RL+ IG+
Sbjct 4 MHLNIKNDEAHRLATELAQLTGESLTGAVTAALREQLARERRRRQSDKVAERLMKIGNHY 63
Query 57 ASRMSPEAKRLDHDALLYDERGLP 80
AS P+ R + L YDE GLP
Sbjct 64 AS--LPDTGRSPDEILGYDEHGLP 85
>gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [Frankia sp. CcI3]
gi|86565825|gb|ABD09634.1| Rv0623-like transcription factor [Frankia sp. CcI3]
Length=89
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/84 (41%), Positives = 52/84 (62%), Gaps = 8/84 (9%)
Query 3 LNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSD-----DLAARLLAIGHKTA 57
LNIK+ + +++A++TGE+ AV AV ERL R+R+D AAR++A+G +TA
Sbjct 9 LNIKNEEAQRLSRELAELTGETVTTAVLVAVRERLERMRADRDEGEQRAARIVALGRQTA 68
Query 58 SRMSPEAKRLDHDALLYDERGLPA 81
+ + P ++ LYDE GLPA
Sbjct 69 AAVPPPGLSIED---LYDEHGLPA 89
>gi|83592605|ref|YP_426357.1| transcription factor [Rhodospirillum rubrum ATCC 11170]
gi|83575519|gb|ABC22070.1| Rv0623-like transcription factor [Rhodospirillum rubrum ATCC
11170]
Length=82
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/83 (44%), Positives = 48/83 (58%), Gaps = 5/83 (6%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAA---RLLAIGHKTA 57
M+L IKDP H+ + IA+ TG+S AR V A+ ER A + A LLAI + A
Sbjct 1 MSLTIKDPEAHRLAQAIARATGKSMARVVTEALRERYAEIEHRQAKASVEELLAIADRAA 60
Query 58 SRMSPEAKRLDHDALLYDERGLP 80
++ + R+DH LLYDE GLP
Sbjct 61 AQGN--RPRVDHADLLYDEHGLP 81
>gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomonas palustris BisB18]
gi|90107432|gb|ABD89469.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB18]
Length=83
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/84 (42%), Positives = 49/84 (59%), Gaps = 6/84 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR----SDDLAARLLAIGHKT 56
M LNIK+ H+ ++A++TGES AV A+ E+L R R +D A +L+ IG +
Sbjct 1 MHLNIKNDEAHRLATELAELTGESLTAAVTAALREQLVRERRRRQTDQAAEQLMKIGRRY 60
Query 57 ASRMSPEAKRLDHDALLYDERGLP 80
AS P++ R D L YDE GLP
Sbjct 61 AS--LPDSGRSADDILGYDEHGLP 82
>gi|116254472|ref|YP_770308.1| hypothetical protein pRL100006 [Rhizobium leguminosarum bv. viciae
3841]
gi|241554095|ref|YP_002979308.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115259120|emb|CAK10231.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
gi|240863401|gb|ACS61063.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length=82
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/85 (42%), Positives = 46/85 (55%), Gaps = 9/85 (10%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL---RSDDLAARLLAIGHKTA 57
M+L+IKDP H+ + I+ TGES R V A+ ER A++ + LLAI A
Sbjct 1 MSLSIKDPEAHRLAQAISHATGESMTRVVTEALRERFAKIERRKGRASVEELLAI----A 56
Query 58 SRMSPEAKR--LDHDALLYDERGLP 80
R + KR +DH LYDE GLP
Sbjct 57 DRAAAHVKRPYVDHAEFLYDENGLP 81
>gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeobacter violaceus PCC 7421]
gi|35213795|dbj|BAC91165.1| gsr3224 [Gloeobacter violaceus PCC 7421]
Length=92
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/86 (35%), Positives = 52/86 (61%), Gaps = 12/86 (13%)
Query 3 LNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS------DDLAARLLAIGHKT 56
+NIK ++ +++++TGES +A+ TA+ ERL ++R+ + +A RLLA+G ++
Sbjct 4 INIKSDKAYRMANELSRLTGESVTQAITTAIEERLEKIRAQTRSRREGIAERLLALGTRS 63
Query 57 ASR--MSPEAKRLDHDALLYDERGLP 80
+ + P A D +LYDE GLP
Sbjct 64 VALPILDPRAP----DEILYDENGLP 85
>gi|334321235|ref|YP_004557775.1| protein transcription factor [Sinorhizobium meliloti AK83]
gi|334100023|gb|AEG58031.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
AK83]
Length=87
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/83 (38%), Positives = 45/83 (55%), Gaps = 5/83 (6%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL---RSDDLAARLLAIGHKTA 57
++L+IKDP H+ + I+ TGES R V A+ ERLA++ + LLAI + A
Sbjct 6 VSLSIKDPEAHRLAQAISHATGESMTRVVTNALRERLAKIERRKGRASVEELLAIADRAA 65
Query 58 SRMSPEAKRLDHDALLYDERGLP 80
+ + DH LYDE G+P
Sbjct 66 THVKHPYD--DHADFLYDENGIP 86
>gi|340776554|ref|ZP_08696497.1| protein transcription factor [Acetobacter aceti NBRC 14818]
Length=84
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/85 (43%), Positives = 52/85 (62%), Gaps = 7/85 (8%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS----DDLAARLLAIGHKT 56
M LNIK+ H+ ++A++TGE+ AV TA+ ERL R R +D+A RL+ IG +
Sbjct 1 MHLNIKNDEAHRLAAELARLTGENLTSAVTTALRERLDRERRRHARNDVAERLMTIGRRY 60
Query 57 ASRMSPEAKRLDHDALL-YDERGLP 80
A+ P+ D DA+L YDE G+P
Sbjct 61 AAL--PDGASTDPDAILGYDENGVP 83
>gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycobacterium tuberculosis H37Rv]
gi|15840024|ref|NP_335061.1| hypothetical protein MT0651 [Mycobacterium tuberculosis CDC1551]
gi|31791805|ref|NP_854298.1| hypothetical protein Mb0639 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=84
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/86 (44%), Positives = 47/86 (55%), Gaps = 7/86 (8%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT 56
MAL+IK P + + +A TGE+ AV TA+ ERLA R R L L AI H+
Sbjct 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
Query 57 ASRMSPEAKRLDHDALL-YDERGLPA 81
A+ P +A+L YDERGLPA
Sbjct 61 AA--LPVVDNRSAEAILGYDERGLPA 84
>gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcription factor [Methylobacterium
nodulans ORS 2060]
gi|219952042|gb|ACL62433.1| Rv0623 family protein transcription factor [Methylobacterium
nodulans ORS 2060]
Length=84
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/84 (39%), Positives = 43/84 (52%), Gaps = 3/84 (3%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARL---LAIGHKTA 57
MAL+IKDP + + +A+ TGE+ A A+ ERL R+ SD A L LA +
Sbjct 1 MALSIKDPETERLARTLAERTGETITVATRKALEERLRRVGSDARKAALLEDLAACRRRW 60
Query 58 SRMSPEAKRLDHDALLYDERGLPA 81
S + R + L YDE GLP
Sbjct 61 STLPVLDPRSADEILGYDENGLPG 84
>gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
gi|84384996|gb|EAQ00876.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
Length=86
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/87 (37%), Positives = 46/87 (53%), Gaps = 7/87 (8%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLL------AIGH 54
MALNIKDP + +++A TGES A A+ ERL R+ A R + I
Sbjct 1 MALNIKDPETDRLARELAAATGESITVAARRAIEERLERIHHQQRAIRPVGDDAIDGIIA 60
Query 55 KTASRMSPEAKRLDHDALLYDERGLPA 81
+ +R +A+ +D + L YDE GLP+
Sbjct 61 RGRARPVLDARPVD-EILGYDENGLPS 86
>gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcription factor [Acidobacterium sp.
MP5ACTX8]
gi|298599417|gb|EFI55577.1| Rv0623 family protein transcription factor [Acidobacterium sp.
MP5ACTX8]
Length=91
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/42 (46%), Positives = 27/42 (65%), Gaps = 0/42 (0%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS 42
MAL+I +P+V Q V+ +A +TGES A+ A ERL R +
Sbjct 6 MALHITNPAVEQKVRSLASVTGESITEAIGAAAEERLIRFNA 47
>gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription factor, family protein [Synechococcus
sp. CB0101]
Length=89
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/90 (35%), Positives = 47/90 (53%), Gaps = 10/90 (11%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSD---------DLAARLLA 51
MALNI++P + Q+A ++GE++ AV A+ ERL RL+S L RL
Sbjct 1 MALNIRNPEADRLAAQVACLSGETKTDAVILALKERLQRLQSQPEAGKVRQRSLIHRLDQ 60
Query 52 IGHKTASRMSPEAKRLDHDALLYDERGLPA 81
I + A+R ++ D + YD GLP+
Sbjct 61 IALRCAARPILDSSSAD-EICGYDASGLPS 89
>gi|320449625|ref|YP_004201721.1| hypothetical protein TSC_c05400 [Thermus scotoductus SA-01]
gi|320149794|gb|ADW21172.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length=86
Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 1/64 (1%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLL-AIGHKTASR 59
MA I+D V + V+++ ++TGES+A AV A+ RLA L+ LL + K S+
Sbjct 1 MAFTIRDKDVERLVEEVTRLTGESRAEAVRKALEMRLAELKPRQGLQNLLRTLEDKIWSK 60
Query 60 MSPE 63
+ PE
Sbjct 61 IPPE 64
>gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription factor, family protein [Synechococcus
sp. CB0101]
Length=76
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/81 (36%), Positives = 44/81 (55%), Gaps = 5/81 (6%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
MALNI++P + Q+A + GE+++ AV A+ ERL R L RL I + A+R
Sbjct 1 MALNIRNPEADRLAAQVACLAGETKSDAVILALKERLQR----SLIYRLDQIALRCAARP 56
Query 61 SPEAKRLDHDALLYDERGLPA 81
+ + D + YD GLP+
Sbjct 57 ILDLRSAD-EICGYDASGLPS 76
>gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcription factor [Nakamurella multipartita
DSM 44233]
gi|258553547|gb|ACV76489.1| Rv0623 family protein transcription factor [Nakamurella multipartita
DSM 44233]
Length=84
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/84 (39%), Positives = 41/84 (49%), Gaps = 5/84 (5%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
M LNIKDP + +++A GES A A+ ERL+RLR+ A +G R
Sbjct 1 MVLNIKDPETDRLARELAAEAGESLTVATRRAIEERLSRLRARKRAND-PDLGLDEFIRR 59
Query 61 SPEAKRLDH----DALLYDERGLP 80
E LD D + YDE GLP
Sbjct 60 GRERAVLDERSPDDIIGYDEHGLP 83
>gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap046 [Sinorhizobium meliloti]
gi|76880847|gb|ABA56017.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=85
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/85 (35%), Positives = 45/85 (53%), Gaps = 6/85 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL-----RSDDLAARLLAIGHK 55
M+LNIK+P+ ++A+ G S+ A+ A++ERL R+ D L L AI +
Sbjct 1 MSLNIKNPATVALADELARRQGISKTAAIHQALSERLHRMGHGEVSQDRLLGELRAIRQR 60
Query 56 TASRMSPEAKRLDHDALLYDERGLP 80
A R+ R D + + YDE G+P
Sbjct 61 IA-RLPELDSRSDEEIIGYDEHGIP 84
>gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomonas palustris BisB18]
gi|90104868|gb|ABD86905.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB18]
Length=84
Score = 40.8 bits (94), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 3/83 (3%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLL---AIGHKTA 57
MAL+IKDP + + +A++TGE+ A A+ +RL+RL + LL A +
Sbjct 1 MALSIKDPETERLARTLARLTGENITTATKRAIEQRLSRLAGPSRKSALLQEMADIRRRW 60
Query 58 SRMSPEAKRLDHDALLYDERGLP 80
S + R + L YD GLP
Sbjct 61 SELPVVDDRTPEEILGYDAHGLP 83
>gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
gi|334684070|dbj|BAK33655.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
Length=84
Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/42 (48%), Positives = 27/42 (65%), Gaps = 0/42 (0%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS 42
MALNIKDP + +++A TGES A A+ ERL R+R+
Sbjct 1 MALNIKDPETDRLARELAAATGESITVAARRAIEERLERVRA 42
>gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobactrum anthropi ATCC 49188]
gi|151559863|gb|ABS13361.1| Rv0623 family protein transcription factor [Ochrobactrum anthropi
ATCC 49188]
Length=90
Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/64 (36%), Positives = 38/64 (60%), Gaps = 5/64 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSD-----DLAARLLAIGHK 55
MAL+IK + ++++++TGE+ A+ A+ ERL RLR++ D AR+ A +
Sbjct 1 MALSIKTDEADRLARELSRLTGETMTDAITQAMRERLDRLRAEREAQRDYVARMKAFVRE 60
Query 56 TASR 59
ASR
Sbjct 61 RASR 64
>gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcription factor [Meiothermus ruber
DSM 1279]
gi|290469581|gb|ADD27000.1| Rv0623 family protein transcription factor [Meiothermus ruber
DSM 1279]
Length=88
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/40 (43%), Positives = 29/40 (73%), Gaps = 0/40 (0%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL 40
MAL +K+P V + +++A++TGE++ A+ A+ ER ARL
Sbjct 1 MALTVKNPEVERLAEEVARLTGETKTEAIRKALLERKARL 40
>gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobacter autotrophicus Py2]
gi|154162799|gb|ABS70014.1| Rv0623 family protein transcription factor [Xanthobacter autotrophicus
Py2]
Length=85
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 48/85 (57%), Gaps = 6/85 (7%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLA-ARLL----AIGHK 55
M+LNIK+P+ ++A+ G ++ A+ A++ERL R+ D A ARLL AI +
Sbjct 1 MSLNIKNPATVALADELARRQGVTKTAAIHQALSERLHRMGYGDTAQARLLGELRAIRER 60
Query 56 TASRMSPEAKRLDHDALLYDERGLP 80
A R+ R D + + +DE G+P
Sbjct 61 VA-RLPELDTRSDEEIVGFDEHGIP 84
>gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sinorhizobium meliloti 1021]
gi|334315271|ref|YP_004547890.1| protein transcription factor [Sinorhizobium meliloti AK83]
gi|15073736|emb|CAC45377.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810692|gb|AEG03361.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
BL225C]
gi|334094265|gb|AEG52276.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
AK83]
gi|336031809|gb|AEH77741.1| hypothetical protein SM11_chr0460 [Sinorhizobium meliloti SM11]
Length=84
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/88 (39%), Positives = 43/88 (49%), Gaps = 11/88 (12%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAAR-------LLAIG 53
MAL+IKD Q + +A+ TGES A A+ E RLR D AAR L AI
Sbjct 1 MALSIKDTETEQLARTLARRTGESITLATKRALEE---RLRRTDTAARRAALLEDLEAIQ 57
Query 54 HKTASRMSPEAKRLDHDALLYDERGLPA 81
+ + M R D + YDE GLP+
Sbjct 58 RRWNA-MPVLDSRSSDDIIGYDEDGLPS 84
>gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
gi|91802781|gb|ABE65153.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
Length=84
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/83 (35%), Positives = 40/83 (49%), Gaps = 3/83 (3%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
MAL+IKDP + + +A+ TGE+ A A+ ERL R S A LL R+
Sbjct 1 MALSIKDPETEKLARALAQRTGETITVATRRAIEERLKRTESQARKAALLEDMEAMQRRL 60
Query 61 SPEA---KRLDHDALLYDERGLP 80
+ R D + YDE G+P
Sbjct 61 NALPILDPRSPDDIIGYDENGVP 83
>gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription factor, family protein [Mycobacterium
smegmatis str. MC2 155]
gi|118170237|gb|ABK71133.1| probable ribbon-helix-helix transcription factor, family protein
[Mycobacterium smegmatis str. MC2 155]
Length=84
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/85 (38%), Positives = 46/85 (55%), Gaps = 5/85 (5%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL--RSDDLAAR--LLAIGHKT 56
MAL+IK P + +++A TGE+ AV A+ ERLAR R+ + R L AI +
Sbjct 1 MALSIKHPEADRLARELAARTGETLTEAVVMALRERLARTVGRTQVVPLREELAAIRRRC 60
Query 57 ASRMSPEAKRLDHDALLYDERGLPA 81
A+ + R L YD+RGLP+
Sbjct 61 AA-LPVLDDRTAESILGYDDRGLPS 84
>gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541 [Mycobacterium canettii CIPT
140010059]
gi|340004938|emb|CCC44086.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=70
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/70 (43%), Positives = 39/70 (56%), Gaps = 5/70 (7%)
Query 16 QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA 71
++A TGE+ +AV AV E+LA R RS L L AIG + A+ + + D
Sbjct 2 ELAARTGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADK-I 60
Query 72 LLYDERGLPA 81
L YDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|167648432|ref|YP_001686095.1| transcription factor [Caulobacter sp. K31]
gi|167350862|gb|ABZ73597.1| Rv0623 family protein transcription factor [Caulobacter sp. K31]
Length=115
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/37 (46%), Positives = 25/37 (68%), Gaps = 0/37 (0%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERL 37
M + IK+P +AV+++A +TGES A+ AV ERL
Sbjct 24 MGILIKNPEAERAVRELADLTGESLTTAIEIAVKERL 60
>gi|256824142|ref|YP_003148102.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM
20547]
gi|256687535|gb|ACV05337.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM
20547]
Length=103
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/90 (37%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA------RLRSDDLAARL---LA 51
MAL IK+ V ++ A+ +G+SQ + A+ LA R D++ AR+ LA
Sbjct 22 MALTIKNDRVCDLAREAAQRSGQSQVSVIEQALERYLADHAEPVGRRVDEVLARIDASLA 81
Query 52 IGHKTASRMSPEAKRLDHDALLYDERGLPA 81
G A R+ LD LYDERGLPA
Sbjct 82 PGDAAAMRVE-----LDR---LYDERGLPA 103
>gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tuberculosis SUMu001]
gi|308370808|ref|ZP_07422802.2| antitoxin [Mycobacterium tuberculosis SUMu003]
gi|308372041|ref|ZP_07427168.2| antitoxin [Mycobacterium tuberculosis SUMu004]
15 more sequence titles
Length=72
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/71 (43%), Positives = 38/71 (54%), Gaps = 7/71 (9%)
Query 16 QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA 71
++A GE+ +AV AV E+LA R RS L L AIG + A+ P D
Sbjct 4 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAA--LPVLDTRAADT 61
Query 72 LL-YDERGLPA 81
+L YDERGLPA
Sbjct 62 ILGYDERGLPA 72
>gi|256826048|ref|YP_003150008.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM
20547]
gi|256689441|gb|ACV07243.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM
20547]
Length=88
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/39 (47%), Positives = 24/39 (62%), Gaps = 0/39 (0%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLAR 39
MALNIK+ VHQ ++ A + G SQ A+ A+ E L R
Sbjct 1 MALNIKNERVHQLAREAAALRGTSQTSALEAALEEYLER 39
>gi|344341725|ref|ZP_08772641.1| Rv0623 family protein transcription factor [Thiocapsa marina
5811]
gi|343798328|gb|EGV16286.1| Rv0623 family protein transcription factor [Thiocapsa marina
5811]
Length=98
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/81 (36%), Positives = 43/81 (54%), Gaps = 4/81 (4%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
M L I +P+V V+++A++TG S+ AV AV++ L L D AA A +++
Sbjct 20 MPLQIANPAVVGKVERLARVTGLSKTAAVERAVDQLLREL---DGAAEPAACMRALLAQL 76
Query 61 SPEAKRLD-HDALLYDERGLP 80
R D D L +DE GLP
Sbjct 77 DRIPDRADAFDPLPWDEAGLP 97
>gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289694418|gb|EFD61847.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=70
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/70 (42%), Positives = 38/70 (55%), Gaps = 5/70 (7%)
Query 16 QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA 71
++A GE+ +AV AV E+LA R RS L L AIG + A+ + + D
Sbjct 2 ELAARMGETLTQAVVVAVREQLARRAGRTRSISLREELAAIGRRCAALPVLDTRAADT-I 60
Query 72 LLYDERGLPA 81
L YDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycobacterium tuberculosis H37Rv]
gi|15841204|ref|NP_336241.1| hypothetical protein MT1782 [Mycobacterium tuberculosis CDC1551]
gi|31792928|ref|NP_855421.1| hypothetical protein Mb1769 [Mycobacterium bovis AF2122/97]
45 more sequence titles
Length=70
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/70 (42%), Positives = 38/70 (55%), Gaps = 5/70 (7%)
Query 16 QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA 71
++A GE+ +AV AV E+LA R RS L L AIG + A+ + + D
Sbjct 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-I 60
Query 72 LLYDERGLPA 81
L YDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254550753|ref|ZP_05141200.1| hypothetical protein Mtube_09889 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|124600992|gb|EAY60002.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=64
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/64 (44%), Positives = 35/64 (55%), Gaps = 5/64 (7%)
Query 22 GESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDALLYDER 77
GE+ +AV AV E+LA R RS L L AIG + A+ + + D L YDER
Sbjct 2 GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-ILGYDER 60
Query 78 GLPA 81
GLPA
Sbjct 61 GLPA 64
>gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcription factor [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510716|gb|EFI34619.1| Rv0623 family protein transcription factor [Desulfonatronospira
thiodismutans ASO3-1]
Length=83
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/81 (33%), Positives = 43/81 (54%), Gaps = 3/81 (3%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM 60
MAL+I++P + +++A +GE+ +A+ ++ ERL RL AA L A R
Sbjct 1 MALSIRNPEAERLAREVAARSGENITQAIIHSLEERLQRLGHQQQAAARLEELQAIAGRC 60
Query 61 S--PEA-KRLDHDALLYDERG 78
P+ +R + + L YDE G
Sbjct 61 QALPDLDQRSEEEILGYDEHG 81
>gi|168013114|ref|XP_001759246.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689559|gb|EDQ75930.1| predicted protein [Physcomitrella patens subsp. patens]
Length=937
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/62 (46%), Positives = 32/62 (52%), Gaps = 1/62 (1%)
Query 3 LNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRMSP 62
L I DPS A K +K G SQ + V T V RL RLR+ AAR LA K +P
Sbjct 627 LKIADPSGDAAGKWDSKAQGSSQYQKVETIVENRL-RLRASKEAARELASQAKELIEPAP 685
Query 63 EA 64
EA
Sbjct 686 EA 687
>gi|337266993|ref|YP_004611048.1| protein transcription factor [Mesorhizobium opportunistum WSM2075]
gi|336027303|gb|AEH86954.1| Rv0623 family protein transcription factor [Mesorhizobium opportunistum
WSM2075]
Length=88
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/87 (33%), Positives = 41/87 (48%), Gaps = 6/87 (6%)
Query 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR------SDDLAARLLAIGH 54
MAL+IK+ V Q +++A+ S A+ ++ +AR R + DL RLLAI
Sbjct 1 MALSIKNMEVEQLARELARRRRVSVTEAIRQSLEREVARERLVPREETSDLYQRLLAISE 60
Query 55 KTASRMSPEAKRLDHDALLYDERGLPA 81
E D + L YDE G+P
Sbjct 61 SAGKIPKRENAMTDDEILGYDEFGIPT 87
>gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|289554486|ref|ZP_06443696.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|297634295|ref|ZP_06952075.1| antitoxin [Mycobacterium tuberculosis KZN 4207]
gi|297731282|ref|ZP_06960400.1| antitoxin [Mycobacterium tuberculosis KZN R506]
gi|313658614|ref|ZP_07815494.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
gi|253320721|gb|ACT25324.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|289439118|gb|EFD21611.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328458973|gb|AEB04396.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=70
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (53%), Gaps = 5/70 (7%)
Query 16 QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA 71
++A GE+ +AV AV E+LA R RS L L AIG + + + + D
Sbjct 2 ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCEALPVLDTRAADT-I 60
Query 72 LLYDERGLPA 81
L YDERGLPA
Sbjct 61 LGYDERGLPA 70
>gi|145223549|ref|YP_001134227.1| AMP-dependent synthetase and ligase [Mycobacterium gilvum PYR-GCK]
gi|315443896|ref|YP_004076775.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium sp.
Spyr1]
gi|145216035|gb|ABP45439.1| AMP-dependent synthetase and ligase [Mycobacterium gilvum PYR-GCK]
gi|315262199|gb|ADT98940.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium sp.
Spyr1]
Length=601
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/56 (40%), Positives = 33/56 (59%), Gaps = 4/56 (7%)
Query 23 ESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRMSPEAKRLDHDALLYDERG 78
E+ A A AV+ER+A +RS D AA L+ + + + P+ +L H LLY+ RG
Sbjct 162 EAGASVDAAAVDERVASIRSTD-AATLI---YTSGTTGRPKGCQLTHSNLLYEIRG 213
>gi|296140932|ref|YP_003648175.1| class III aminotransferase [Tsukamurella paurometabola DSM 20162]
gi|296029066|gb|ADG79836.1| aminotransferase class-III [Tsukamurella paurometabola DSM 20162]
Length=428
Score = 33.9 bits (76), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/52 (41%), Positives = 29/52 (56%), Gaps = 2/52 (3%)
Query 4 NIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS--DDLAARLLAIG 53
++ DP V + + G+ A VA+ V R ARLR+ D+LAAR AIG
Sbjct 298 HVSDPMVAAVATTVLDVLGDGAAEGVASEVAARGARLRAGLDELAARHEAIG 349
Lambda K H
0.316 0.128 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128409240708
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40