BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0608

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607748|ref|NP_215122.1|  hypothetical protein Rv0608 [Mycoba...   161    4e-38
gi|120402182|ref|YP_952011.1|  transcription factor [Mycobacteriu...   111    4e-23
gi|91975925|ref|YP_568584.1|  Rv0623-like transcription factor [R...  59.7    1e-07
gi|192292980|ref|YP_001993585.1|  Rv0623 family protein transcrip...  59.3    2e-07
gi|293980660|ref|YP_003543418.1|  hypothetical protein SJA_P2-001...  59.3    2e-07
gi|39937201|ref|NP_949477.1|  hypothetical protein RPA4141 [Rhodo...  58.9    2e-07
gi|115526059|ref|YP_782970.1|  transcription factor [Rhodopseudom...  58.5    3e-07
gi|86738963|ref|YP_479363.1|  Rv0623-like transcription factor [F...  58.2    4e-07
gi|83592605|ref|YP_426357.1|  transcription factor [Rhodospirillu...  57.4    8e-07
gi|90425418|ref|YP_533788.1|  transcription factor [Rhodopseudomo...  55.1    4e-06
gi|116254472|ref|YP_770308.1|  hypothetical protein pRL100006 [Rh...  54.7    5e-06
gi|37522793|ref|NP_926170.1|  hypothetical protein gsr3224 [Gloeo...  53.5    1e-05
gi|334321235|ref|YP_004557775.1|  protein transcription factor [S...  50.8    6e-05
gi|340776554|ref|ZP_08696497.1|  protein transcription factor [Ac...  47.8    6e-04
gi|15607763|ref|NP_215137.1|  hypothetical protein Rv0623 [Mycoba...  44.7    0.004
gi|220919622|ref|YP_002494925.1|  Rv0623 family protein transcrip...  43.5    0.011
gi|84495503|ref|ZP_00994622.1|  hypothetical protein JNB_11894 [J...  43.1    0.014
gi|299138781|ref|ZP_07031959.1|  Rv0623 family protein transcript...  42.7    0.017
gi|318040913|ref|ZP_07972869.1|  ribbon-helix-helix transcription...  42.7    0.020
gi|320449625|ref|YP_004201721.1|  hypothetical protein TSC_c05400...  42.4    0.025
gi|318040906|ref|ZP_07972862.1|  ribbon-helix-helix transcription...  41.6    0.038
gi|258650322|ref|YP_003199478.1|  Rv0623 family protein transcrip...  41.6    0.044
gi|270208573|ref|YP_003329344.1|  hypothetical protein pSmeSM11ap...  40.8    0.068
gi|90422854|ref|YP_531224.1|  transcription factor [Rhodopseudomo...  40.8    0.074
gi|336116292|ref|YP_004571058.1|  hypothetical protein MLP_06410 ...  40.4    0.084
gi|153007975|ref|YP_001369190.1|  transcription factor [Ochrobact...  40.4    0.096
gi|291294622|ref|YP_003506020.1|  Rv0623 family protein transcrip...  40.0    0.12 
gi|154243677|ref|YP_001409250.1|  transcription factor [Xanthobac...  40.0    0.12 
gi|15964558|ref|NP_384911.1|  hypothetical protein SMc00899 [Sino...  39.7    0.14 
gi|92109699|ref|YP_571985.1|  Rv0623-like transcription factor [N...  39.7    0.15 
gi|118468950|ref|YP_885673.1|  ribbon-helix-helix transcription f...  39.7    0.17 
gi|340626748|ref|YP_004745200.1|  hypothetical protein MCAN_17541...  38.9    0.28 
gi|167648432|ref|YP_001686095.1|  transcription factor [Caulobact...  37.4    0.65 
gi|256824142|ref|YP_003148102.1|  Rv0623-like transcription facto...  36.6    1.3  
gi|308231916|ref|ZP_07414265.2|  antitoxin [Mycobacterium tubercu...  36.6    1.4  
gi|256826048|ref|YP_003150008.1|  Rv0623-like transcription facto...  36.2    1.5  
gi|344341725|ref|ZP_08772641.1|  Rv0623 family protein transcript...  36.2    1.6  
gi|289753831|ref|ZP_06513209.1|  conserved hypothetical protein [...  36.2    1.6  
gi|15608878|ref|NP_216256.1|  hypothetical protein Rv1740 [Mycoba...  36.2    1.6  
gi|254231933|ref|ZP_04925260.1|  conserved hypothetical protein [...  36.2    1.9  
gi|298529280|ref|ZP_07016683.1|  Rv0623 family protein transcript...  35.8    2.2  
gi|168013114|ref|XP_001759246.1|  predicted protein [Physcomitrel...  35.0    3.3  
gi|337266993|ref|YP_004611048.1|  protein transcription factor [M...  34.7    4.9  
gi|253799218|ref|YP_003032219.1|  antitoxin [Mycobacterium tuberc...  34.3    5.9  
gi|145223549|ref|YP_001134227.1|  AMP-dependent synthetase and li...  34.3    5.9  
gi|296140932|ref|YP_003648175.1|  class III aminotransferase [Tsu...  33.9    9.1  


>gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycobacterium tuberculosis H37Rv]
 gi|15840008|ref|NP_335045.1| hypothetical protein MT0637 [Mycobacterium tuberculosis CDC1551]
 gi|31791790|ref|NP_854283.1| hypothetical protein Mb0624 [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=81

 Score =  161 bits (407),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60
           MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM
Sbjct  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60

Query  61  SPEAKRLDHDALLYDERGLPA  81
           SPEAKRLDHDALLYDERGLPA
Sbjct  61  SPEAKRLDHDALLYDERGLPA  81


>gi|120402182|ref|YP_952011.1| transcription factor [Mycobacterium vanbaalenii PYR-1]
 gi|119955000|gb|ABM12005.1| Rv0623 family protein transcription factor [Mycobacterium vanbaalenii 
PYR-1]
Length=81

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 54/81 (67%), Positives = 65/81 (81%), Gaps = 0/81 (0%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60
           MALNIKD  VH AVKQ+A++TGESQA+AVATAV ERL+R++ DDLA RLLA+G +TA RM
Sbjct  1   MALNIKDEKVHDAVKQLARLTGESQAQAVATAVQERLSRVQQDDLAERLLALGRRTAQRM  60

Query  61  SPEAKRLDHDALLYDERGLPA  81
           +   K LDH  LLYD+ GLP 
Sbjct  61  TSATKNLDHGELLYDDAGLPG  81


>gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB5]
 gi|91682381|gb|ABE38683.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB5]
Length=83

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 37/84 (45%), Positives = 50/84 (60%), Gaps = 6/84 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR----SDDLAARLLAIGHKT  56
           M LNIK+   H+   ++A++TGES   AV  A+ E+LAR R    +D +A RLL IG + 
Sbjct  1   MHLNIKNDEAHRLASELAELTGESLTAAVTAALREQLARERRRRQTDKIAERLLKIGDRY  60

Query  57  ASRMSPEAKRLDHDALLYDERGLP  80
           A+   P+  R   D L YDE GLP
Sbjct  61  AA--LPDTGRTPDDVLGYDEHGLP  82


>gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris TIE-1]
 gi|192286729|gb|ACF03110.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris TIE-1]
Length=83

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/84 (43%), Positives = 50/84 (60%), Gaps = 6/84 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT  56
           M LNIK+   HQ   ++A++TGES   AV  A+ E+LA    R ++D +A RLL IG + 
Sbjct  1   MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY  60

Query  57  ASRMSPEAKRLDHDALLYDERGLP  80
           A+   P+  R   + L YDE GLP
Sbjct  61  AA--VPDTGRTPDEILGYDENGLP  82


>gi|293980660|ref|YP_003543418.1| hypothetical protein SJA_P2-00160 [Sphingobium japonicum UT26S]
 gi|292677677|dbj|BAI99192.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=82

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/85 (43%), Positives = 48/85 (57%), Gaps = 9/85 (10%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL---RSDDLAARLLAIGHKTA  57
           M+LN+KDP  H+  + IA+ TG+S  R V  A+ ER AR+   +S    A LL I    A
Sbjct  1   MSLNVKDPEAHRLAQAIAQATGQSMTRVVTEALRERFARIERQKSKASVAELLTI----A  56

Query  58  SRMSPEAKR--LDHDALLYDERGLP  80
            R +   KR  +DH  L YD+ GLP
Sbjct  57  DRAATHVKRPYVDHAELFYDDNGLP  81


>gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodopseudomonas palustris CGA009]
 gi|316935648|ref|YP_004110630.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
 gi|39651059|emb|CAE29582.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|315603362|gb|ADU45897.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris DX-1]
Length=83

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/85 (43%), Positives = 50/85 (59%), Gaps = 6/85 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT  56
           M LNIK+   HQ   ++A++TGES   AV  A+ E+LA    R ++D +A RLL IG + 
Sbjct  1   MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY  60

Query  57  ASRMSPEAKRLDHDALLYDERGLPA  81
           A+   P+  R   + L YDE GLP 
Sbjct  61  AA--LPDTGRTPDEILGYDENGLPT  83


>gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudomonas palustris BisA53]
 gi|115520006|gb|ABJ07990.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris BisA53]
Length=86

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 37/84 (45%), Positives = 50/84 (60%), Gaps = 6/84 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR----SDDLAARLLAIGHKT  56
           M LNIK+   H+   ++A++TGES   AV  A+ E+LAR R    SD +A RL+ IG+  
Sbjct  4   MHLNIKNDEAHRLATELAQLTGESLTGAVTAALREQLARERRRRQSDKVAERLMKIGNHY  63

Query  57  ASRMSPEAKRLDHDALLYDERGLP  80
           AS   P+  R   + L YDE GLP
Sbjct  64  AS--LPDTGRSPDEILGYDEHGLP  85


>gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [Frankia sp. CcI3]
 gi|86565825|gb|ABD09634.1| Rv0623-like transcription factor [Frankia sp. CcI3]
Length=89

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 52/84 (62%), Gaps = 8/84 (9%)

Query  3   LNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSD-----DLAARLLAIGHKTA  57
           LNIK+    +  +++A++TGE+   AV  AV ERL R+R+D       AAR++A+G +TA
Sbjct  9   LNIKNEEAQRLSRELAELTGETVTTAVLVAVRERLERMRADRDEGEQRAARIVALGRQTA  68

Query  58  SRMSPEAKRLDHDALLYDERGLPA  81
           + + P    ++    LYDE GLPA
Sbjct  69  AAVPPPGLSIED---LYDEHGLPA  89


>gi|83592605|ref|YP_426357.1| transcription factor [Rhodospirillum rubrum ATCC 11170]
 gi|83575519|gb|ABC22070.1| Rv0623-like transcription factor [Rhodospirillum rubrum ATCC 
11170]
Length=82

 Score = 57.4 bits (137),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 36/83 (44%), Positives = 48/83 (58%), Gaps = 5/83 (6%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAA---RLLAIGHKTA  57
           M+L IKDP  H+  + IA+ TG+S AR V  A+ ER A +      A    LLAI  + A
Sbjct  1   MSLTIKDPEAHRLAQAIARATGKSMARVVTEALRERYAEIEHRQAKASVEELLAIADRAA  60

Query  58  SRMSPEAKRLDHDALLYDERGLP  80
           ++ +    R+DH  LLYDE GLP
Sbjct  61  AQGN--RPRVDHADLLYDEHGLP  81


>gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomonas palustris BisB18]
 gi|90107432|gb|ABD89469.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB18]
Length=83

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 49/84 (59%), Gaps = 6/84 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR----SDDLAARLLAIGHKT  56
           M LNIK+   H+   ++A++TGES   AV  A+ E+L R R    +D  A +L+ IG + 
Sbjct  1   MHLNIKNDEAHRLATELAELTGESLTAAVTAALREQLVRERRRRQTDQAAEQLMKIGRRY  60

Query  57  ASRMSPEAKRLDHDALLYDERGLP  80
           AS   P++ R   D L YDE GLP
Sbjct  61  AS--LPDSGRSADDILGYDEHGLP  82


>gi|116254472|ref|YP_770308.1| hypothetical protein pRL100006 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|241554095|ref|YP_002979308.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum 
bv. trifolii WSM1325]
 gi|115259120|emb|CAK10231.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 
3841]
 gi|240863401|gb|ACS61063.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum 
bv. trifolii WSM1325]
Length=82

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 46/85 (55%), Gaps = 9/85 (10%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL---RSDDLAARLLAIGHKTA  57
           M+L+IKDP  H+  + I+  TGES  R V  A+ ER A++   +       LLAI    A
Sbjct  1   MSLSIKDPEAHRLAQAISHATGESMTRVVTEALRERFAKIERRKGRASVEELLAI----A  56

Query  58  SRMSPEAKR--LDHDALLYDERGLP  80
            R +   KR  +DH   LYDE GLP
Sbjct  57  DRAAAHVKRPYVDHAEFLYDENGLP  81


>gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeobacter violaceus PCC 7421]
 gi|35213795|dbj|BAC91165.1| gsr3224 [Gloeobacter violaceus PCC 7421]
Length=92

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 30/86 (35%), Positives = 52/86 (61%), Gaps = 12/86 (13%)

Query  3   LNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS------DDLAARLLAIGHKT  56
           +NIK    ++   +++++TGES  +A+ TA+ ERL ++R+      + +A RLLA+G ++
Sbjct  4   INIKSDKAYRMANELSRLTGESVTQAITTAIEERLEKIRAQTRSRREGIAERLLALGTRS  63

Query  57  ASR--MSPEAKRLDHDALLYDERGLP  80
            +   + P A     D +LYDE GLP
Sbjct  64  VALPILDPRAP----DEILYDENGLP  85


>gi|334321235|ref|YP_004557775.1| protein transcription factor [Sinorhizobium meliloti AK83]
 gi|334100023|gb|AEG58031.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
AK83]
Length=87

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 31/83 (38%), Positives = 45/83 (55%), Gaps = 5/83 (6%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL---RSDDLAARLLAIGHKTA  57
           ++L+IKDP  H+  + I+  TGES  R V  A+ ERLA++   +       LLAI  + A
Sbjct  6   VSLSIKDPEAHRLAQAISHATGESMTRVVTNALRERLAKIERRKGRASVEELLAIADRAA  65

Query  58  SRMSPEAKRLDHDALLYDERGLP  80
           + +       DH   LYDE G+P
Sbjct  66  THVKHPYD--DHADFLYDENGIP  86


>gi|340776554|ref|ZP_08696497.1| protein transcription factor [Acetobacter aceti NBRC 14818]
Length=84

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 36/85 (43%), Positives = 52/85 (62%), Gaps = 7/85 (8%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS----DDLAARLLAIGHKT  56
           M LNIK+   H+   ++A++TGE+   AV TA+ ERL R R     +D+A RL+ IG + 
Sbjct  1   MHLNIKNDEAHRLAAELARLTGENLTSAVTTALRERLDRERRRHARNDVAERLMTIGRRY  60

Query  57  ASRMSPEAKRLDHDALL-YDERGLP  80
           A+   P+    D DA+L YDE G+P
Sbjct  61  AAL--PDGASTDPDAILGYDENGVP  83


>gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycobacterium tuberculosis H37Rv]
 gi|15840024|ref|NP_335061.1| hypothetical protein MT0651 [Mycobacterium tuberculosis CDC1551]
 gi|31791805|ref|NP_854298.1| hypothetical protein Mb0639 [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=84

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 47/86 (55%), Gaps = 7/86 (8%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT  56
           MAL+IK P   +  + +A  TGE+   AV TA+ ERLA    R R   L   L AI H+ 
Sbjct  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60

Query  57  ASRMSPEAKRLDHDALL-YDERGLPA  81
           A+   P       +A+L YDERGLPA
Sbjct  61  AA--LPVVDNRSAEAILGYDERGLPA  84


>gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcription factor [Methylobacterium 
nodulans ORS 2060]
 gi|219952042|gb|ACL62433.1| Rv0623 family protein transcription factor [Methylobacterium 
nodulans ORS 2060]
Length=84

 Score = 43.5 bits (101),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 32/84 (39%), Positives = 43/84 (52%), Gaps = 3/84 (3%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARL---LAIGHKTA  57
           MAL+IKDP   +  + +A+ TGE+   A   A+ ERL R+ SD   A L   LA   +  
Sbjct  1   MALSIKDPETERLARTLAERTGETITVATRKALEERLRRVGSDARKAALLEDLAACRRRW  60

Query  58  SRMSPEAKRLDHDALLYDERGLPA  81
           S +     R   + L YDE GLP 
Sbjct  61  STLPVLDPRSADEILGYDENGLPG  84


>gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
 gi|84384996|gb|EAQ00876.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
Length=86

 Score = 43.1 bits (100),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 32/87 (37%), Positives = 46/87 (53%), Gaps = 7/87 (8%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLL------AIGH  54
           MALNIKDP   +  +++A  TGES   A   A+ ERL R+     A R +       I  
Sbjct  1   MALNIKDPETDRLARELAAATGESITVAARRAIEERLERIHHQQRAIRPVGDDAIDGIIA  60

Query  55  KTASRMSPEAKRLDHDALLYDERGLPA  81
           +  +R   +A+ +D + L YDE GLP+
Sbjct  61  RGRARPVLDARPVD-EILGYDENGLPS  86


>gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcription factor [Acidobacterium sp. 
MP5ACTX8]
 gi|298599417|gb|EFI55577.1| Rv0623 family protein transcription factor [Acidobacterium sp. 
MP5ACTX8]
Length=91

 Score = 42.7 bits (99),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 19/42 (46%), Positives = 27/42 (65%), Gaps = 0/42 (0%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS  42
           MAL+I +P+V Q V+ +A +TGES   A+  A  ERL R  +
Sbjct  6   MALHITNPAVEQKVRSLASVTGESITEAIGAAAEERLIRFNA  47


>gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription factor, family protein [Synechococcus 
sp. CB0101]
Length=89

 Score = 42.7 bits (99),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 31/90 (35%), Positives = 47/90 (53%), Gaps = 10/90 (11%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSD---------DLAARLLA  51
           MALNI++P   +   Q+A ++GE++  AV  A+ ERL RL+S           L  RL  
Sbjct  1   MALNIRNPEADRLAAQVACLSGETKTDAVILALKERLQRLQSQPEAGKVRQRSLIHRLDQ  60

Query  52  IGHKTASRMSPEAKRLDHDALLYDERGLPA  81
           I  + A+R   ++   D +   YD  GLP+
Sbjct  61  IALRCAARPILDSSSAD-EICGYDASGLPS  89


>gi|320449625|ref|YP_004201721.1| hypothetical protein TSC_c05400 [Thermus scotoductus SA-01]
 gi|320149794|gb|ADW21172.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length=86

 Score = 42.4 bits (98),  Expect = 0.025, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 1/64 (1%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLL-AIGHKTASR  59
           MA  I+D  V + V+++ ++TGES+A AV  A+  RLA L+       LL  +  K  S+
Sbjct  1   MAFTIRDKDVERLVEEVTRLTGESRAEAVRKALEMRLAELKPRQGLQNLLRTLEDKIWSK  60

Query  60  MSPE  63
           + PE
Sbjct  61  IPPE  64


>gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription factor, family protein [Synechococcus 
sp. CB0101]
Length=76

 Score = 41.6 bits (96),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 44/81 (55%), Gaps = 5/81 (6%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60
           MALNI++P   +   Q+A + GE+++ AV  A+ ERL R     L  RL  I  + A+R 
Sbjct  1   MALNIRNPEADRLAAQVACLAGETKSDAVILALKERLQR----SLIYRLDQIALRCAARP  56

Query  61  SPEAKRLDHDALLYDERGLPA  81
             + +  D +   YD  GLP+
Sbjct  57  ILDLRSAD-EICGYDASGLPS  76


>gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcription factor [Nakamurella multipartita 
DSM 44233]
 gi|258553547|gb|ACV76489.1| Rv0623 family protein transcription factor [Nakamurella multipartita 
DSM 44233]
Length=84

 Score = 41.6 bits (96),  Expect = 0.044, Method: Compositional matrix adjust.
 Identities = 32/84 (39%), Positives = 41/84 (49%), Gaps = 5/84 (5%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60
           M LNIKDP   +  +++A   GES   A   A+ ERL+RLR+   A     +G     R 
Sbjct  1   MVLNIKDPETDRLARELAAEAGESLTVATRRAIEERLSRLRARKRAND-PDLGLDEFIRR  59

Query  61  SPEAKRLDH----DALLYDERGLP  80
             E   LD     D + YDE GLP
Sbjct  60  GRERAVLDERSPDDIIGYDEHGLP  83


>gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap046 [Sinorhizobium meliloti]
 gi|76880847|gb|ABA56017.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=85

 Score = 40.8 bits (94),  Expect = 0.068, Method: Compositional matrix adjust.
 Identities = 29/85 (35%), Positives = 45/85 (53%), Gaps = 6/85 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL-----RSDDLAARLLAIGHK  55
           M+LNIK+P+      ++A+  G S+  A+  A++ERL R+       D L   L AI  +
Sbjct  1   MSLNIKNPATVALADELARRQGISKTAAIHQALSERLHRMGHGEVSQDRLLGELRAIRQR  60

Query  56  TASRMSPEAKRLDHDALLYDERGLP  80
            A R+     R D + + YDE G+P
Sbjct  61  IA-RLPELDSRSDEEIIGYDEHGIP  84


>gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomonas palustris BisB18]
 gi|90104868|gb|ABD86905.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB18]
Length=84

 Score = 40.8 bits (94),  Expect = 0.074, Method: Compositional matrix adjust.
 Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 3/83 (3%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLL---AIGHKTA  57
           MAL+IKDP   +  + +A++TGE+   A   A+ +RL+RL      + LL   A   +  
Sbjct  1   MALSIKDPETERLARTLARLTGENITTATKRAIEQRLSRLAGPSRKSALLQEMADIRRRW  60

Query  58  SRMSPEAKRLDHDALLYDERGLP  80
           S +     R   + L YD  GLP
Sbjct  61  SELPVVDDRTPEEILGYDAHGLP  83


>gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
 gi|334684070|dbj|BAK33655.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
Length=84

 Score = 40.4 bits (93),  Expect = 0.084, Method: Compositional matrix adjust.
 Identities = 20/42 (48%), Positives = 27/42 (65%), Gaps = 0/42 (0%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS  42
           MALNIKDP   +  +++A  TGES   A   A+ ERL R+R+
Sbjct  1   MALNIKDPETDRLARELAAATGESITVAARRAIEERLERVRA  42


>gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobactrum anthropi ATCC 49188]
 gi|151559863|gb|ABS13361.1| Rv0623 family protein transcription factor [Ochrobactrum anthropi 
ATCC 49188]
Length=90

 Score = 40.4 bits (93),  Expect = 0.096, Method: Compositional matrix adjust.
 Identities = 23/64 (36%), Positives = 38/64 (60%), Gaps = 5/64 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSD-----DLAARLLAIGHK  55
           MAL+IK     +  ++++++TGE+   A+  A+ ERL RLR++     D  AR+ A   +
Sbjct  1   MALSIKTDEADRLARELSRLTGETMTDAITQAMRERLDRLRAEREAQRDYVARMKAFVRE  60

Query  56  TASR  59
            ASR
Sbjct  61  RASR  64


>gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcription factor [Meiothermus ruber 
DSM 1279]
 gi|290469581|gb|ADD27000.1| Rv0623 family protein transcription factor [Meiothermus ruber 
DSM 1279]
Length=88

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 17/40 (43%), Positives = 29/40 (73%), Gaps = 0/40 (0%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL  40
           MAL +K+P V +  +++A++TGE++  A+  A+ ER ARL
Sbjct  1   MALTVKNPEVERLAEEVARLTGETKTEAIRKALLERKARL  40


>gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobacter autotrophicus Py2]
 gi|154162799|gb|ABS70014.1| Rv0623 family protein transcription factor [Xanthobacter autotrophicus 
Py2]
Length=85

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 48/85 (57%), Gaps = 6/85 (7%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLA-ARLL----AIGHK  55
           M+LNIK+P+      ++A+  G ++  A+  A++ERL R+   D A ARLL    AI  +
Sbjct  1   MSLNIKNPATVALADELARRQGVTKTAAIHQALSERLHRMGYGDTAQARLLGELRAIRER  60

Query  56  TASRMSPEAKRLDHDALLYDERGLP  80
            A R+     R D + + +DE G+P
Sbjct  61  VA-RLPELDTRSDEEIVGFDEHGIP  84


>gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sinorhizobium meliloti 1021]
 gi|334315271|ref|YP_004547890.1| protein transcription factor [Sinorhizobium meliloti AK83]
 gi|15073736|emb|CAC45377.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810692|gb|AEG03361.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
BL225C]
 gi|334094265|gb|AEG52276.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
AK83]
 gi|336031809|gb|AEH77741.1| hypothetical protein SM11_chr0460 [Sinorhizobium meliloti SM11]
Length=84

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 34/88 (39%), Positives = 43/88 (49%), Gaps = 11/88 (12%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAAR-------LLAIG  53
           MAL+IKD    Q  + +A+ TGES   A   A+ E   RLR  D AAR       L AI 
Sbjct  1   MALSIKDTETEQLARTLARRTGESITLATKRALEE---RLRRTDTAARRAALLEDLEAIQ  57

Query  54  HKTASRMSPEAKRLDHDALLYDERGLPA  81
            +  + M     R   D + YDE GLP+
Sbjct  58  RRWNA-MPVLDSRSSDDIIGYDEDGLPS  84


>gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
 gi|91802781|gb|ABE65153.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
Length=84

 Score = 39.7 bits (91),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 29/83 (35%), Positives = 40/83 (49%), Gaps = 3/83 (3%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60
           MAL+IKDP   +  + +A+ TGE+   A   A+ ERL R  S    A LL        R+
Sbjct  1   MALSIKDPETEKLARALAQRTGETITVATRRAIEERLKRTESQARKAALLEDMEAMQRRL  60

Query  61  SPEA---KRLDHDALLYDERGLP  80
           +       R   D + YDE G+P
Sbjct  61  NALPILDPRSPDDIIGYDENGVP  83


>gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription factor, family protein [Mycobacterium 
smegmatis str. MC2 155]
 gi|118170237|gb|ABK71133.1| probable ribbon-helix-helix transcription factor, family protein 
[Mycobacterium smegmatis str. MC2 155]
Length=84

 Score = 39.7 bits (91),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 32/85 (38%), Positives = 46/85 (55%), Gaps = 5/85 (5%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARL--RSDDLAAR--LLAIGHKT  56
           MAL+IK P   +  +++A  TGE+   AV  A+ ERLAR   R+  +  R  L AI  + 
Sbjct  1   MALSIKHPEADRLARELAARTGETLTEAVVMALRERLARTVGRTQVVPLREELAAIRRRC  60

Query  57  ASRMSPEAKRLDHDALLYDERGLPA  81
           A+ +     R     L YD+RGLP+
Sbjct  61  AA-LPVLDDRTAESILGYDDRGLPS  84


>gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541 [Mycobacterium canettii CIPT 
140010059]
 gi|340004938|emb|CCC44086.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=70

 Score = 38.9 bits (89),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 39/70 (56%), Gaps = 5/70 (7%)

Query  16  QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA  71
           ++A  TGE+  +AV  AV E+LA    R RS  L   L AIG + A+    + +  D   
Sbjct  2   ELAARTGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADK-I  60

Query  72  LLYDERGLPA  81
           L YDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|167648432|ref|YP_001686095.1| transcription factor [Caulobacter sp. K31]
 gi|167350862|gb|ABZ73597.1| Rv0623 family protein transcription factor [Caulobacter sp. K31]
Length=115

 Score = 37.4 bits (85),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 17/37 (46%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERL  37
           M + IK+P   +AV+++A +TGES   A+  AV ERL
Sbjct  24  MGILIKNPEAERAVRELADLTGESLTTAIEIAVKERL  60


>gi|256824142|ref|YP_003148102.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM 
20547]
 gi|256687535|gb|ACV05337.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM 
20547]
Length=103

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 33/90 (37%), Positives = 45/90 (50%), Gaps = 17/90 (18%)

Query  1    MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA------RLRSDDLAARL---LA  51
            MAL IK+  V    ++ A+ +G+SQ   +  A+   LA        R D++ AR+   LA
Sbjct  22   MALTIKNDRVCDLAREAAQRSGQSQVSVIEQALERYLADHAEPVGRRVDEVLARIDASLA  81

Query  52   IGHKTASRMSPEAKRLDHDALLYDERGLPA  81
             G   A R+      LD    LYDERGLPA
Sbjct  82   PGDAAAMRVE-----LDR---LYDERGLPA  103


>gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tuberculosis SUMu001]
 gi|308370808|ref|ZP_07422802.2| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|308372041|ref|ZP_07427168.2| antitoxin [Mycobacterium tuberculosis SUMu004]
 15 more sequence titles
 Length=72

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 30/71 (43%), Positives = 38/71 (54%), Gaps = 7/71 (9%)

Query  16  QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA  71
           ++A   GE+  +AV  AV E+LA    R RS  L   L AIG + A+   P       D 
Sbjct  4   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAA--LPVLDTRAADT  61

Query  72  LL-YDERGLPA  81
           +L YDERGLPA
Sbjct  62  ILGYDERGLPA  72


>gi|256826048|ref|YP_003150008.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM 
20547]
 gi|256689441|gb|ACV07243.1| Rv0623-like transcription factor [Kytococcus sedentarius DSM 
20547]
Length=88

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 18/39 (47%), Positives = 24/39 (62%), Gaps = 0/39 (0%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLAR  39
           MALNIK+  VHQ  ++ A + G SQ  A+  A+ E L R
Sbjct  1   MALNIKNERVHQLAREAAALRGTSQTSALEAALEEYLER  39


>gi|344341725|ref|ZP_08772641.1| Rv0623 family protein transcription factor [Thiocapsa marina 
5811]
 gi|343798328|gb|EGV16286.1| Rv0623 family protein transcription factor [Thiocapsa marina 
5811]
Length=98

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 43/81 (54%), Gaps = 4/81 (4%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60
           M L I +P+V   V+++A++TG S+  AV  AV++ L  L   D AA   A      +++
Sbjct  20  MPLQIANPAVVGKVERLARVTGLSKTAAVERAVDQLLREL---DGAAEPAACMRALLAQL  76

Query  61  SPEAKRLD-HDALLYDERGLP  80
                R D  D L +DE GLP
Sbjct  77  DRIPDRADAFDPLPWDEAGLP  97


>gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289694418|gb|EFD61847.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=70

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 38/70 (55%), Gaps = 5/70 (7%)

Query  16  QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA  71
           ++A   GE+  +AV  AV E+LA    R RS  L   L AIG + A+    + +  D   
Sbjct  2   ELAARMGETLTQAVVVAVREQLARRAGRTRSISLREELAAIGRRCAALPVLDTRAADT-I  60

Query  72  LLYDERGLPA  81
           L YDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycobacterium tuberculosis H37Rv]
 gi|15841204|ref|NP_336241.1| hypothetical protein MT1782 [Mycobacterium tuberculosis CDC1551]
 gi|31792928|ref|NP_855421.1| hypothetical protein Mb1769 [Mycobacterium bovis AF2122/97]
 45 more sequence titles
 Length=70

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 38/70 (55%), Gaps = 5/70 (7%)

Query  16  QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA  71
           ++A   GE+  +AV  AV E+LA    R RS  L   L AIG + A+    + +  D   
Sbjct  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-I  60

Query  72  LLYDERGLPA  81
           L YDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254550753|ref|ZP_05141200.1| hypothetical protein Mtube_09889 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|124600992|gb|EAY60002.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=64

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 35/64 (55%), Gaps = 5/64 (7%)

Query  22  GESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDALLYDER  77
           GE+  +AV  AV E+LA    R RS  L   L AIG + A+    + +  D   L YDER
Sbjct  2   GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADT-ILGYDER  60

Query  78  GLPA  81
           GLPA
Sbjct  61  GLPA  64


>gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcription factor [Desulfonatronospira 
thiodismutans ASO3-1]
 gi|298510716|gb|EFI34619.1| Rv0623 family protein transcription factor [Desulfonatronospira 
thiodismutans ASO3-1]
Length=83

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 26/81 (33%), Positives = 43/81 (54%), Gaps = 3/81 (3%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRM  60
           MAL+I++P   +  +++A  +GE+  +A+  ++ ERL RL     AA  L      A R 
Sbjct  1   MALSIRNPEAERLAREVAARSGENITQAIIHSLEERLQRLGHQQQAAARLEELQAIAGRC  60

Query  61  S--PEA-KRLDHDALLYDERG  78
              P+  +R + + L YDE G
Sbjct  61  QALPDLDQRSEEEILGYDEHG  81


>gi|168013114|ref|XP_001759246.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689559|gb|EDQ75930.1| predicted protein [Physcomitrella patens subsp. patens]
Length=937

 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 28/62 (46%), Positives = 32/62 (52%), Gaps = 1/62 (1%)

Query  3    LNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRMSP  62
            L I DPS   A K  +K  G SQ + V T V  RL RLR+   AAR LA   K     +P
Sbjct  627  LKIADPSGDAAGKWDSKAQGSSQYQKVETIVENRL-RLRASKEAARELASQAKELIEPAP  685

Query  63   EA  64
            EA
Sbjct  686  EA  687


>gi|337266993|ref|YP_004611048.1| protein transcription factor [Mesorhizobium opportunistum WSM2075]
 gi|336027303|gb|AEH86954.1| Rv0623 family protein transcription factor [Mesorhizobium opportunistum 
WSM2075]
Length=88

 Score = 34.7 bits (78),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 28/87 (33%), Positives = 41/87 (48%), Gaps = 6/87 (6%)

Query  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLR------SDDLAARLLAIGH  54
           MAL+IK+  V Q  +++A+    S   A+  ++   +AR R      + DL  RLLAI  
Sbjct  1   MALSIKNMEVEQLARELARRRRVSVTEAIRQSLEREVARERLVPREETSDLYQRLLAISE  60

Query  55  KTASRMSPEAKRLDHDALLYDERGLPA  81
                   E    D + L YDE G+P 
Sbjct  61  SAGKIPKRENAMTDDEILGYDEFGIPT  87


>gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289554486|ref|ZP_06443696.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297634295|ref|ZP_06952075.1| antitoxin [Mycobacterium tuberculosis KZN 4207]
 gi|297731282|ref|ZP_06960400.1| antitoxin [Mycobacterium tuberculosis KZN R506]
 gi|313658614|ref|ZP_07815494.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
 gi|253320721|gb|ACT25324.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289439118|gb|EFD21611.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328458973|gb|AEB04396.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=70

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (53%), Gaps = 5/70 (7%)

Query  16  QIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKTASRMSPEAKRLDHDA  71
           ++A   GE+  +AV  AV E+LA    R RS  L   L AIG +  +    + +  D   
Sbjct  2   ELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCEALPVLDTRAADT-I  60

Query  72  LLYDERGLPA  81
           L YDERGLPA
Sbjct  61  LGYDERGLPA  70


>gi|145223549|ref|YP_001134227.1| AMP-dependent synthetase and ligase [Mycobacterium gilvum PYR-GCK]
 gi|315443896|ref|YP_004076775.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium sp. 
Spyr1]
 gi|145216035|gb|ABP45439.1| AMP-dependent synthetase and ligase [Mycobacterium gilvum PYR-GCK]
 gi|315262199|gb|ADT98940.1| AMP-forming long-chain acyl-CoA synthetase [Mycobacterium sp. 
Spyr1]
Length=601

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 33/56 (59%), Gaps = 4/56 (7%)

Query  23   ESQARAVATAVNERLARLRSDDLAARLLAIGHKTASRMSPEAKRLDHDALLYDERG  78
            E+ A   A AV+ER+A +RS D AA L+   + + +   P+  +L H  LLY+ RG
Sbjct  162  EAGASVDAAAVDERVASIRSTD-AATLI---YTSGTTGRPKGCQLTHSNLLYEIRG  213


>gi|296140932|ref|YP_003648175.1| class III aminotransferase [Tsukamurella paurometabola DSM 20162]
 gi|296029066|gb|ADG79836.1| aminotransferase class-III [Tsukamurella paurometabola DSM 20162]
Length=428

 Score = 33.9 bits (76),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 21/52 (41%), Positives = 29/52 (56%), Gaps = 2/52 (3%)

Query  4    NIKDPSVHQAVKQIAKITGESQARAVATAVNERLARLRS--DDLAARLLAIG  53
            ++ DP V      +  + G+  A  VA+ V  R ARLR+  D+LAAR  AIG
Sbjct  298  HVSDPMVAAVATTVLDVLGDGAAEGVASEVAARGARLRAGLDELAARHEAIG  349



Lambda     K      H
   0.316    0.128    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128409240708




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40