BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0609

Length=133
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607749|ref|NP_215123.1|  hypothetical protein Rv0609 [Mycoba...   263    9e-69
gi|340625632|ref|YP_004744084.1|  hypothetical protein MCAN_06101...   226    7e-58
gi|120402183|ref|YP_952012.1|  PilT domain-containing protein [My...   224    3e-57
gi|256824143|ref|YP_003148103.1|  hypothetical protein Ksed_02550...   126    9e-28
gi|84497913|ref|ZP_00996710.1|  hypothetical protein JNB_17538 [J...   120    8e-26
gi|334321234|ref|YP_004557774.1|  PilT protein domain-containing ...   119    1e-25
gi|293980661|ref|YP_003543419.1|  hypothetical protein SJA_P2-001...   119    2e-25
gi|116254471|ref|YP_770307.1|  hypothetical protein pRL100005 [Rh...   118    3e-25
gi|340776555|ref|ZP_08696498.1|  PilT protein-like protein [Aceto...   118    3e-25
gi|241554096|ref|YP_002979309.1|  PilT protein domain protein [Rh...   116    1e-24
gi|254424570|ref|ZP_05038288.1|  hypothetical protein S7335_4730 ...   114    6e-24
gi|39937202|ref|NP_949478.1|  PilT protein N-terminal [Rhodopseud...   112    1e-23
gi|192292981|ref|YP_001993586.1|  PilT protein domain-containing ...   112    2e-23
gi|299138782|ref|ZP_07031960.1|  PilT protein domain protein [Aci...   112    2e-23
gi|15609896|ref|NP_217275.1|  hypothetical protein Rv2759c [Mycob...   111    3e-23
gi|316935649|ref|YP_004110631.1|  PilT domain-containing protein ...   111    4e-23
gi|115526060|ref|YP_782971.1|  PilT domain-containing protein [Rh...   110    9e-23
gi|284041784|ref|YP_003392124.1|  PilT protein domain protein [Co...   109    1e-22
gi|256826047|ref|YP_003150007.1|  hypothetical protein Ksed_22620...   107    8e-22
gi|92109698|ref|YP_571984.1|  PilT protein-like [Nitrobacter hamb...   105    2e-21
gi|154243673|ref|YP_001409246.1|  PilT domain-containing protein ...   105    3e-21
gi|91975924|ref|YP_568583.1|  PilT protein-like protein [Rhodopse...   102    2e-20
gi|339499339|ref|YP_004697374.1|  PilT protein domain-containing ...  99.4    2e-19
gi|153869463|ref|ZP_01999056.1|  conserved hypothetical protein [...  99.4    2e-19
gi|227819246|ref|YP_002823217.1|  hypothetical protein NGR_b10110...  99.4    2e-19
gi|298529281|ref|ZP_07016684.1|  PilT protein domain protein [Des...  99.0    2e-19
gi|15964557|ref|NP_384910.1|  hypothetical protein SMc00900 [Sino...  97.4    6e-19
gi|336116293|ref|YP_004571059.1|  hypothetical protein MLP_06420 ...  97.4    6e-19
gi|318040914|ref|ZP_07972870.1|  hypothetical protein SCB01_04369...  96.7    1e-18
gi|153007976|ref|YP_001369191.1|  PilT domain-containing protein ...  95.9    2e-18
gi|220919621|ref|YP_002494924.1|  PilT protein domain protein [Me...  94.4    5e-18
gi|114328764|ref|YP_745921.1|  putative cytoplasmic protein [Gran...  94.0    7e-18
gi|55980470|ref|YP_143767.1|  hypothetical protein TTHA0501 [Ther...  92.4    2e-17
gi|318040907|ref|ZP_07972863.1|  hypothetical protein SCB01_04334...  90.5    7e-17
gi|334315170|ref|YP_004547789.1|  PilT protein domain-containing ...  90.5    7e-17
gi|118472447|ref|YP_885674.1|  PilT domain-containing protein [My...  90.1    9e-17
gi|226227509|ref|YP_002761615.1|  hypothetical protein GAU_2103 [...  88.6    3e-16
gi|218533403|ref|YP_002424218.1|  PilT protein [Methylobacterium ...  88.6    3e-16
gi|337266992|ref|YP_004611047.1|  PilT protein domain-containing ...  88.6    3e-16
gi|316934115|ref|YP_004109097.1|  PilT domain-containing protein ...  88.6    3e-16
gi|46198433|ref|YP_004100.1|  hypothetical protein TTC0125 [Therm...  87.8    5e-16
gi|15607764|ref|NP_215138.1|  hypothetical protein Rv0624 [Mycoba...  86.7    1e-15
gi|218295220|ref|ZP_03496056.1|  PilT protein domain protein [The...  85.5    2e-15
gi|325293169|ref|YP_004279033.1|  PilT domain-containing protein ...  84.7    4e-15
gi|338822860|gb|EGP56828.1|  PilT domain-containing protein [Agro...  84.7    4e-15
gi|254431434|ref|ZP_05045137.1|  hypothetical protein CPCC7001_13...  84.3    5e-15
gi|254558657|ref|YP_003065752.1|  hypothetical protein METDI0004 ...  84.0    6e-15
gi|167648431|ref|YP_001686094.1|  PilT domain-containing protein ...  84.0    6e-15
gi|90425419|ref|YP_533789.1|  PilT protein [Rhodopseudomonas palu...  84.0    7e-15
gi|340626995|ref|YP_004745447.1|  hypothetical protein MCAN_20021...  83.2    1e-14


>gi|15607749|ref|NP_215123.1| hypothetical protein Rv0609 [Mycobacterium tuberculosis H37Rv]
 gi|15840009|ref|NP_335046.1| hypothetical protein MT0638 [Mycobacterium tuberculosis CDC1551]
 gi|31791791|ref|NP_854284.1| hypothetical protein Mb0625 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=133

 Score =  263 bits (671),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +IVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL
Sbjct  1    MIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND
Sbjct  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120

Query  121  FGHTGVQRALDRR  133
            FGHTGVQRALDRR
Sbjct  121  FGHTGVQRALDRR  133


>gi|340625632|ref|YP_004744084.1| hypothetical protein MCAN_06101 [Mycobacterium canettii CIPT 
140010059]
 gi|340003822|emb|CCC42950.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133

 Score =  226 bits (577),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 129/133 (97%), Positives = 133/133 (100%), Gaps = 0/133 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +IVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL
Sbjct  1    MIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +EEAEF+VEPVTERQARLARAA+ADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND
Sbjct  61   VEEAEFIVEPVTERQARLARAAFADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120

Query  121  FGHTGVQRALDRR  133
            FGHTGVQRALDRR
Sbjct  121  FGHTGVQRALDRR  133


>gi|120402183|ref|YP_952012.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955001|gb|ABM12006.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=131

 Score =  224 bits (572),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 109/131 (84%), Positives = 120/131 (92%), Gaps = 0/131 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +I D+SAIIAILRDEDDA  YA ALA ADVRRLSAASYLECGIVLD+QRDPV+SRALDEL
Sbjct  1    MIADSSAIIAILRDEDDAVDYARALAAADVRRLSAASYLECGIVLDAQRDPVVSRALDEL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            I+EA   +EPVTERQA+LAR AYADFG+GSGHPAGLNFGDCLSYALA+DRREPLLWKGND
Sbjct  61   IDEAAMTIEPVTERQAKLARRAYADFGKGSGHPAGLNFGDCLSYALALDRREPLLWKGND  120

Query  121  FGHTGVQRALD  131
            FGHTG+  AL+
Sbjct  121  FGHTGIASALE  131


>gi|256824143|ref|YP_003148103.1| hypothetical protein Ksed_02550 [Kytococcus sedentarius DSM 20547]
 gi|256687536|gb|ACV05338.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 
20547]
Length=130

 Score =  126 bits (317),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 68/129 (53%), Positives = 88/129 (69%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +IVD+SA++AIL  E +  A  +A+  A    ++AASYLE G+V+D + +PV+SR  D L
Sbjct  1    MIVDSSALVAILLAEPERQALLEAIQQAPEAAMTAASYLEVGMVVDGRGNPVLSRQYDAL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +E     V   T  QAR+ARAA+ DFGRGSGHPA LNFGDCLSYA A+    PLL+ G+D
Sbjct  61   LEALGIEVVDTTAEQARVARAAHRDFGRGSGHPARLNFGDCLSYAAAVQDGVPLLFTGDD  120

Query  121  FGHTGVQRA  129
            F HT V  A
Sbjct  121  FIHTDVTPA  129


>gi|84497913|ref|ZP_00996710.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
 gi|84381413|gb|EAP97296.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
Length=132

 Score =  120 bits (300),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 68/129 (53%), Positives = 89/129 (69%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +IVD+SAI+AI   E + A + D LA A    +SAA+Y+ECG+VLD +R    +  LDEL
Sbjct  1    MIVDSSAIVAIHEGEPERARFLDVLAAARGSLISAATYVECGVVLDLKRPEQPTNRLDEL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            ++E +  V  +T  QAR+AR A+  +GRGSGHPA LN GDC SYALA+   EPLL+KG D
Sbjct  61   LDEFDIKVVALTPEQARVARRAHRRYGRGSGHPAKLNLGDCFSYALAMSTDEPLLFKGED  120

Query  121  FGHTGVQRA  129
            F HT V+ A
Sbjct  121  FTHTDVRNA  129


>gi|334321234|ref|YP_004557774.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334100022|gb|AEG58030.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=128

 Score =  119 bits (298),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 62/126 (50%), Positives = 81/126 (65%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +IVDTSA++AIL  E  AA + + + +A+  R+S ASY+E  +V++SQ  P   R  +  
Sbjct  1    MIVDTSALVAILYREPQAARFVNYIHDAETTRISVASYIELSMVVESQLGPDGMRQAEAF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
               A  +VEPVT     LAR A+ DFG+G  H AGLNFGDC +YALA    EPLL+KGND
Sbjct  61   FRRAGIIVEPVTLEHGELARQAFLDFGKGR-HKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FGHTGV  126
            F  T V
Sbjct  120  FSQTDV  125


>gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-00170 [Sphingobium japonicum UT26S]
 gi|292677678|dbj|BAI99193.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=129

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 63/129 (49%), Positives = 83/129 (65%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +I+DTSA++AIL  E +AA +A A+ +AD  R+S ASY+E  +V++ Q  P   R  +  
Sbjct  1    MILDTSALVAILYREPEAATFAQAIHDADACRISVASYVELSMVIERQLGPEGMRQTEAF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
               A   +EPVT     LAR A+ DFG+G  H AGLNFGDC SYALA    EPLL+KGND
Sbjct  61   FRRAGITIEPVTLDHGELARQAFLDFGKGR-HKAGLNFGDCFSYALAKATDEPLLFKGND  119

Query  121  FGHTGVQRA  129
            F  T ++ A
Sbjct  120  FALTDIEAA  128


>gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|115259119|emb|CAK10230.1| conserved hypothetical PIN domain protein [Rhizobium leguminosarum 
bv. viciae 3841]
Length=128

 Score =  118 bits (296),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/129 (47%), Positives = 84/129 (66%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +I+DTSA++AIL  E +AA++   + +A++ R+S A+Y+E  +V++ Q  P   R  D  
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQADAF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
               A  ++EPVT     LAR A+ DFG+G  H AGLNFGDC +YALA    EPLL+KGND
Sbjct  61   FRRAGIIIEPVTLEHGELARQAFLDFGKGR-HKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FGHTGVQRA  129
            F  T V+ A
Sbjct  120  FAQTDVRAA  128


>gi|340776555|ref|ZP_08696498.1| PilT protein-like protein [Acetobacter aceti NBRC 14818]
Length=141

 Score =  118 bits (296),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 66/133 (50%), Positives = 85/133 (64%), Gaps = 3/133 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---L  57
            ++VDTSA+IAI R E +AA +A  + N D   +SAA+ +E  +VL   +    +RA   L
Sbjct  2    IVVDTSAVIAIFRQEPEAADFATRIGNDDDPVISAATVVEASLVLRGLKQISPTRAEAWL  61

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
            DE I  A   +EPVT  QA LAR A+  FG+G+GHPAGLN+GDC SYALA     PLL+K
Sbjct  62   DEFIRIAGMRIEPVTPEQAALARDAHIRFGKGTGHPAGLNYGDCFSYALAKAMGAPLLFK  121

Query  118  GNDFGHTGVQRAL  130
            G DF  T V R +
Sbjct  122  GEDFTRTDVLRLI  134


>gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240863402|gb|ACS61064.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=128

 Score =  116 bits (290),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 59/129 (46%), Positives = 84/129 (66%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +I+DTSA++AIL  E +AA++   + +A++ R+S A+Y+E  +V++ Q  P   R  +  
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEAF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
               A  ++EPVT     LAR A+ DFG+G  H AGLNFGDC +YALA    EPLL+KGND
Sbjct  61   FRRAGIIIEPVTLEHCELARQAFLDFGQGR-HKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FGHTGVQRA  129
            F  T V+ A
Sbjct  120  FAQTDVRAA  128


>gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
 gi|196192059|gb|EDX87023.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
Length=131

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 57/126 (46%), Positives = 85/126 (68%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSAI+A+L DE +   +  A+A A  R +SA++ LEC +V++S++  +    L+  
Sbjct  1    MVIDTSAIVAVLFDEPERTDFVYAIAAASTRLMSASTLLECYLVIESRKQALGRTELELF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + EA+F V P  + Q  LA AA+ ++G+G  H AGLNFGDC +YALA  R EPLL+KGND
Sbjct  61   VYEADFKVVPFDKVQTVLAAAAWREYGKGR-HSAGLNFGDCFAYALAKAREEPLLFKGND  119

Query  121  FGHTGV  126
            F  T +
Sbjct  120  FSQTDI  125


>gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseudomonas palustris CGA009]
 gi|39651060|emb|CAE29583.1| PilT protein, N-terminal [Rhodopseudomonas palustris CGA009]
Length=134

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 62/129 (49%), Positives = 84/129 (66%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---L  57
            +++DTSAIIAI R+E +AA +A  +A+ D   LS+ + LE  IVL   +D   ++A   L
Sbjct  2    IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERWL  61

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
            D+ I EA   +EPVT  QA  AR+A+  FG+G+GH A LN+GDC +YALA     PLL K
Sbjct  62   DDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKALNAPLLCK  121

Query  118  GNDFGHTGV  126
            GNDF  T +
Sbjct  122  GNDFPLTDI  130


>gi|192292981|ref|YP_001993586.1| PilT protein domain-containing protein [Rhodopseudomonas palustris 
TIE-1]
 gi|192286730|gb|ACF03111.1| PilT protein domain protein [Rhodopseudomonas palustris TIE-1]
Length=134

 Score =  112 bits (281),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 62/129 (49%), Positives = 84/129 (66%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---L  57
            +++DTSAIIAI R+E +AA +A  +A+ D   LS+ + LE  IVL   +D   ++A   L
Sbjct  2    IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERWL  61

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
            D+ I EA   +EPVT  QA  AR+A+  FG+G+GH A LN+GDC +YALA     PLL K
Sbjct  62   DDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKAVNAPLLCK  121

Query  118  GNDFGHTGV  126
            GNDF  T +
Sbjct  122  GNDFPLTDI  130


>gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599418|gb|EFI55578.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=128

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 61/129 (48%), Positives = 82/129 (64%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++D+SA++AIL  E DA+ Y  A+ N   R +SAA+ +E  IV+  +R+P    ALD +
Sbjct  1    MVIDSSALVAILLAEPDASIYISAILNDVTRLISAATLVETSIVMIRRREPDAIAALDAV  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +   +  V PV   QA LAR  +  FG+G    AGLNFGDC SYALA+   EPLL+KGND
Sbjct  61   VARLQLTVIPVDREQALLARQGFRRFGKGLDR-AGLNFGDCFSYALAMHLNEPLLFKGND  119

Query  121  FGHTGVQRA  129
            F  T V RA
Sbjct  120  FTFTDVLRA  128


>gi|15609896|ref|NP_217275.1| hypothetical protein Rv2759c [Mycobacterium tuberculosis H37Rv]
 gi|15842297|ref|NP_337334.1| hypothetical protein MT2829 [Mycobacterium tuberculosis CDC1551]
 gi|31793933|ref|NP_856426.1| hypothetical protein Mb2780c [Mycobacterium bovis AF2122/97]
 82 more sequence titles
 Length=131

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 61/129 (48%), Positives = 83/129 (65%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +IVDTSAI+AI+  E  A    +AL  +   R+SA +Y+E   ++  +  P ISR +D L
Sbjct  1    MIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +++    VE V   QAR+A  AY D+GRGSGHPA LN GD  SYALA    EPLL++G+D
Sbjct  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120

Query  121  FGHTGVQRA  129
            F HT ++ A
Sbjct  121  FTHTDIRPA  129


>gi|316935649|ref|YP_004110631.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315603363|gb|ADU45898.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=134

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 61/129 (48%), Positives = 82/129 (64%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---L  57
            +++DTSAIIAI R E +AA +A  +A+ D   LS+ + LE  IVL   +D   ++A   L
Sbjct  2    IVIDTSAIIAIFRKEQEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDVQPAKAERWL  61

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
            D+ I EA   +EPVT  QA  AR+A+  FG+G+GH A LN+GDC +Y LA     PLL K
Sbjct  62   DDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYVLAKALNAPLLCK  121

Query  118  GNDFGHTGV  126
            GNDF  T +
Sbjct  122  GNDFPLTDI  130


>gi|115526060|ref|YP_782971.1| PilT domain-containing protein [Rhodopseudomonas palustris BisA53]
 gi|115520007|gb|ABJ07991.1| PilT protein domain protein [Rhodopseudomonas palustris BisA53]
Length=133

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 60/129 (47%), Positives = 81/129 (63%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---L  57
            ++VD+SA+IAI R E DAA +A  +A+ D   +SAA+ +E  IVL   +    ++A   L
Sbjct  2    IVVDSSAVIAIFRQESDAAQFARRIADDDQPMMSAANLVETSIVLRGLKQIAPAKAERWL  61

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
            DE I  A   +EPV+  QA+ AR A+  FGRG+GH A LNFGDC +Y L+     PLL K
Sbjct  62   DEFIAAAGIRIEPVSPDQAQFARVAHLQFGRGTGHRAALNFGDCFAYGLSKAMDAPLLCK  121

Query  118  GNDFGHTGV  126
            GNDF  T +
Sbjct  122  GNDFPLTDI  130


>gi|284041784|ref|YP_003392124.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283946005|gb|ADB48749.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=129

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 63/129 (49%), Positives = 80/129 (63%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            ++VD+SA++AIL DE+DA   +  L + D   LSAAS LEC IV+      V  R LD+L
Sbjct  1    MVVDSSAVVAILLDEEDATELSATLTDVDDPLLSAASLLECSIVMHKNSGVVGLRDLDDL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            ++E      PV   QA  AR A+  FG+G+  PAGLNFGDC SYALA     PLL+KG D
Sbjct  61   LQETRIRCVPVDLTQALAARRAWVRFGKGN-SPAGLNFGDCFSYALARTMDRPLLFKGGD  119

Query  121  FGHTGVQRA  129
            F  T V+ A
Sbjct  120  FTRTDVRVA  128


>gi|256826047|ref|YP_003150007.1| hypothetical protein Ksed_22620 [Kytococcus sedentarius DSM 20547]
 gi|256689440|gb|ACV07242.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 
20547]
Length=131

 Score =  107 bits (266),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 58/124 (47%), Positives = 76/124 (62%), Gaps = 0/124 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +IVD+SAI+A+L  E+ A     A+      R+SAA+Y+EC +V+D +      R  DEL
Sbjct  1    MIVDSSAIVAVLGGEEGAEGLLRAMVETPRVRMSAATYVECAVVIDRRASAATRRRFDEL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            ++     V P+T   A LAR AY DFGR +G  A LN GDC SYALA    EPLL+ G+D
Sbjct  61   LQTLGVEVVPLTVEHALLAREAYRDFGRSTGSQARLNLGDCYSYALAAHAGEPLLFVGDD  120

Query  121  FGHT  124
            F HT
Sbjct  121  FTHT  124


>gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamburgensis X14]
 gi|91802780|gb|ABE65152.1| PilT protein-like [Nitrobacter hamburgensis X14]
Length=128

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 57/129 (45%), Positives = 83/129 (65%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTS I+AI  +E DAA + + +A+  VR +SAA+ LE  +V++++        LD  
Sbjct  1    MVIDTSPIVAIFFNEPDAARFRERIADDPVRLISAATVLEAAMVIEARLGEAGGTELDLW  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + +A+  + PVT   A  AR A+  +G+G  HPAGLNFGDC SYALA    EPLL+KGND
Sbjct  61   LHKADVEIVPVTAEHADQARRAWRRYGKGR-HPAGLNFGDCFSYALAALSGEPLLYKGND  119

Query  121  FGHTGVQRA  129
            F  T ++ A
Sbjct  120  FSQTDIKAA  128


>gi|154243673|ref|YP_001409246.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162795|gb|ABS70010.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=136

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 58/132 (44%), Positives = 80/132 (61%), Gaps = 3/132 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDS--QRDPV-ISRAL  57
            + VDTS I++IL DE DA  +A+ L +A  R  S    LE  + L +  + DPV +   +
Sbjct  5    MFVDTSVIVSILADEPDAVVFANKLTDAPRRYTSGLVILEAAMRLSTLLKVDPVDVEVRI  64

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
             +++EEA   V P+    A+ A AA+A FG+G GHPA LN  DC+SYA A   R PLL+K
Sbjct  65   QQVLEEARISVIPINASIAKRAVAAFATFGKGRGHPAQLNLADCMSYACARAYRVPLLFK  124

Query  118  GNDFGHTGVQRA  129
            GNDF  T ++ A
Sbjct  125  GNDFSQTDIEVA  136


>gi|91975924|ref|YP_568583.1| PilT protein-like protein [Rhodopseudomonas palustris BisB5]
 gi|91682380|gb|ABE38682.1| PilT protein-like [Rhodopseudomonas palustris BisB5]
Length=133

 Score =  102 bits (253),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 56/129 (44%), Positives = 80/129 (63%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---L  57
            +++DTS +IAI R E++A  +A  +A  D   +SAA+ +E  IVL   +    ++A   L
Sbjct  2    IVLDTSVVIAIFRKEEEATRFAHRIAADDQPIMSAANLIEASIVLRGVKQIAPAKAERWL  61

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
            D+ I  A   +EPVT  QA+LAR A+  FG+G+GH A LN+GDC +Y LA     PLL K
Sbjct  62   DQFIAGAGIRIEPVTPEQAQLARLAHLRFGKGTGHRAALNYGDCFAYGLAKAMDAPLLCK  121

Query  118  GNDFGHTGV  126
            G+DF  T +
Sbjct  122  GDDFPLTDI  130


>gi|339499339|ref|YP_004697374.1| PilT protein domain-containing protein [Spirochaeta caldaria 
DSM 7334]
 gi|338833688|gb|AEJ18866.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 52/126 (42%), Positives = 80/126 (64%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            ++VD+SAI+AIL  E DA  Y DAL + +   +SA ++LE  IV+++++  +   +L  L
Sbjct  1    MVVDSSAILAILLGESDADLYIDALCSGERLLISAVNHLEVAIVIEARKGAIGGESLHSL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +  +   V P+   QA +A AA+  +G+G  HPA LN GDC +YALA    +PLL+KG+D
Sbjct  61   MTHSGIEVLPLDASQAEIALAAWRTYGKGR-HPAALNLGDCAAYALAKTLNQPLLYKGDD  119

Query  121  FGHTGV  126
            F  T +
Sbjct  120  FSKTDI  125


>gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074054|gb|EDN70954.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=131

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 53/127 (42%), Positives = 80/127 (63%), Gaps = 1/127 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSA+IAIL  E +A  +A A+ +   R LSA S LE G+V+++++     + LD L
Sbjct  1    MVIDTSALIAILLREPEAEKFAKAIISNRKRLLSAFSALETGVVIEARKGNPGKQELDLL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +   +  +  + + Q ++A  A+  FG+G  HPA LN GDC SYALA    EPLL+KGND
Sbjct  61   LSYTKIDIVALNDEQVQMAMEAWRKFGKGH-HPAKLNLGDCCSYALAKYFDEPLLFKGND  119

Query  121  FGHTGVQ  127
            F  T ++
Sbjct  120  FNQTDIK  126


>gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110 [Sinorhizobium fredii NGR234]
 gi|227338245|gb|ACP22464.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=128

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 56/129 (44%), Positives = 81/129 (63%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSAI+AI  +E +A  Y   + +A  R +SAA+ LE  IV++++     +  LD  
Sbjct  1    MVIDTSAILAIAFNEPEAETYEQKVVDAPRRFISAATVLELAIVIEARLGEAGAAELDLW  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + +A   V  V   Q  +AR A+  +G+G  HPAGLN+GDC SYALA  R EPLL+KG+D
Sbjct  61   LYKAGVEVVAVDAEQIAVARRAWRSYGKGR-HPAGLNYGDCFSYALARTRNEPLLYKGDD  119

Query  121  FGHTGVQRA  129
            F  T +Q A
Sbjct  120  FSRTDIQAA  128


>gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298510717|gb|EFI34620.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
Length=130

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 55/126 (44%), Positives = 76/126 (61%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            ++ DTSAIIAIL  E +A      +A +    +S+ S LE GIVL++++     R LD  
Sbjct  1    MVSDTSAIIAILTGEPEADVLTRVIAESPDVMMSSFSVLETGIVLEARKGEAGGRELDLF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            ++ A   V P+   Q R+AR A+  FG+G  HPAGLN GDC +YALA     PLL+KG+D
Sbjct  61   LQRARVRVMPLDSEQVRIAREAWRRFGKGR-HPAGLNIGDCCAYALAKSTGAPLLFKGHD  119

Query  121  FGHTGV  126
            F  T +
Sbjct  120  FSKTDI  125


>gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sinorhizobium meliloti 1021]
 gi|334315270|ref|YP_004547889.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|15073735|emb|CAC45376.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810691|gb|AEG03360.1| PilT protein domain protein [Sinorhizobium meliloti BL225C]
 gi|334094264|gb|AEG52275.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
 gi|336031808|gb|AEH77740.1| hypothetical protein SM11_chr0459 [Sinorhizobium meliloti SM11]
Length=128

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 54/129 (42%), Positives = 79/129 (62%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSAI AI  +E +A ++ + +A+  VR +SAA+ LE  +V++++        LD  
Sbjct  1    MVIDTSAIAAIAFNEQEAGSFREKIADDPVRLISAATALEAAMVIETRLGEAAGAELDLW  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + +A   +  VT      AR A+  FG+G  HPAGLNFGDC SYALA    EPLL+KG+D
Sbjct  61   LYKANVEIVAVTAEHMDQARRAWRRFGKGR-HPAGLNFGDCFSYALAFLTNEPLLFKGSD  119

Query  121  FGHTGVQRA  129
            F  T +  A
Sbjct  120  FSQTDIPAA  128


>gi|336116293|ref|YP_004571059.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
 gi|334684071|dbj|BAK33656.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
Length=133

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 61/127 (49%), Positives = 78/127 (62%), Gaps = 2/127 (1%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALA-NADVRRLSAASYLECGIVLDSQRDPVISRALDE  59
            V+VDTSA++A+L  E DA+ YADAL+ N     +SA S +E  IVL+S++ P  +  L+ 
Sbjct  3    VVVDTSAVLAVLLGEPDASRYADALSRNIGDLHMSAVSLVETRIVLESRKGPDAAADLET  62

Query  60   LIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGN  119
            LI      VE VT  QA  A  A+  FG+G  HPA LN GDC SYAL    R  LL+KG+
Sbjct  63   LIARVSIRVEAVTADQADRAWGAWRRFGKGC-HPARLNLGDCFSYALVRALRGNLLYKGD  121

Query  120  DFGHTGV  126
            DF  T V
Sbjct  122  DFSQTDV  128


>gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369 [Synechococcus sp. CB0101]
Length=135

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 55/129 (43%), Positives = 83/129 (65%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++D SA++AIL++E +  A+  A+A+AD   LSAAS +E  IV++++        LD  
Sbjct  1    MVIDPSAVLAILQNEPERPAFNAAIASADHCALSAASLVELSIVIEARYGSDGQGDLDLF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +  A+  +  +   QA +ARAA+A +G+G  H A LN GDC SYALA    +PLL+KG+D
Sbjct  61   LSTAQISIVSLDREQAEIARAAFARYGKGR-HRASLNLGDCFSYALAQWLEQPLLFKGDD  119

Query  121  FGHTGVQRA  129
            F HT +Q A
Sbjct  120  FCHTDLQAA  128


>gi|153007976|ref|YP_001369191.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559864|gb|ABS13362.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=142

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 60/137 (44%), Positives = 80/137 (59%), Gaps = 6/137 (4%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVL-----DSQRDPVISR  55
            +IVD SAIIAIL DE +A    DAL +   R +SA +Y+E G VL     +  R   I+ 
Sbjct  2    MIVDASAIIAILFDEVEAPECMDALQSDTARLISAVNYVEAGTVLAGRIREGDRHAAIAD  61

Query  56   ALDELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLL  115
             LD  + +   +V  + +R AR A  A  ++G+G G  AGLNFGDC +YALA     PLL
Sbjct  62   -LDAFLADFGILVASIDDRLARAAMKARVEYGKGFGTRAGLNFGDCFAYALAKRHSAPLL  120

Query  116  WKGNDFGHTGVQRALDR  132
            + G+DF  T +Q AL R
Sbjct  121  YVGDDFALTDIQSALSR  137


>gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
 gi|219952041|gb|ACL62432.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
Length=128

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 58/129 (45%), Positives = 80/129 (63%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSAI+AI  DE +AA +   +A+  VR +SAA+ LE  +VL+++        LD  
Sbjct  1    MVIDTSAIVAIALDEPEAAGFERKIADDPVRLISAATVLEAAMVLETRLGEAGGSELDLW  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + +AE  +  V    A  AR A+  +G+G  H AGLNFGDC SYALA    EPLL+KGND
Sbjct  61   LHKAEVEIVAVEPEHADRARRAWRRYGKGR-HSAGLNFGDCFSYALAALTGEPLLFKGND  119

Query  121  FGHTGVQRA  129
            F  T V+ A
Sbjct  120  FSQTDVRAA  128


>gi|114328764|ref|YP_745921.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316938|gb|ABI62998.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1]
Length=141

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 53/130 (41%), Positives = 80/130 (62%), Gaps = 1/130 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +I+DTSA++AI+  E D   Y +AL  A+  R+SAA++LE  ++++ +   +     DE 
Sbjct  1    MILDTSALLAIVLGEPDGPRYLEALVAAERPRMSAANWLEASMMVEEKGGRLAGLRFDEF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            I  A   + PV+  QA +AR A+  FGR   H   LN+GDCL+YALA    + LL+KG D
Sbjct  61   IRAAGIEIVPVSAEQATVARGAWRYFGRFR-HAHRLNYGDCLAYALAKTESDRLLYKGRD  119

Query  121  FGHTGVQRAL  130
            F HT ++ A+
Sbjct  120  FDHTDIEPAI  129


>gi|55980470|ref|YP_143767.1| hypothetical protein TTHA0501 [Thermus thermophilus HB8]
 gi|55771883|dbj|BAD70324.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length=130

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 54/124 (44%), Positives = 73/124 (59%), Gaps = 1/124 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSA++ IL  E+      + L      +++A +  E GIVL ++        L EL
Sbjct  1    MVLDTSALLGILFREEGYEELLEQLRRTRPHKVAAPTLAEAGIVLGARLGFERVHLLFEL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + E +  + P TER AR A +AY  +GRG  HPAGLNFGDCLSYALA    EPLL+KG  
Sbjct  61   LTELQAEIVPFTERHAREAISAYRRYGRGK-HPAGLNFGDCLSYALARVEGEPLLYKGQG  119

Query  121  FGHT  124
            F  T
Sbjct  120  FDRT  123


>gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334 [Synechococcus sp. CB0101]
Length=132

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 53/129 (42%), Positives = 81/129 (63%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++D SA++AIL++E +  A+  A+A+AD   LSAA  +E  IV++++        LD  
Sbjct  1    MVIDPSAVLAILQNEPERQAFNAAIASADHCALSAALLVELSIVIEARYGSDGQGDLDLF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +  A+  +  +   QA +ARAA+A +G+G  H A LN GDC SYA A    +PLL+KG+D
Sbjct  61   LNTAQISIVSLDRGQAEIARAAFARYGKGR-HRASLNLGDCFSYARAQWLEQPLLFKGHD  119

Query  121  FGHTGVQRA  129
            F HT +Q A
Sbjct  120  FCHTDLQPA  128


>gi|334315170|ref|YP_004547789.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334094164|gb|AEG52175.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=131

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 50/128 (40%), Positives = 74/128 (58%), Gaps = 0/128 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            ++VD+SA++AI + EDDA   ADA+A+AD   +SA +  E  ++L ++  P  +      
Sbjct  2    MVVDSSAVVAIFQAEDDALPLADAMASADQLVMSAVNAHETAMILRARGGPESAEDFWRF  61

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +      V P  E QAR A  A+  FG+G    A LN  DC +YALA     PLL+KG+D
Sbjct  62   LSVNGIEVAPFNEEQAREASEAFGRFGKGIHSKARLNLADCAAYALAKSLSAPLLFKGDD  121

Query  121  FGHTGVQR  128
            F HT +++
Sbjct  122  FIHTDIEK  129


>gi|118472447|ref|YP_885674.1| PilT domain-containing protein [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173734|gb|ABK74630.1| PIN domain protein [Mycobacterium smegmatis str. MC2 155]
Length=129

 Score = 90.1 bits (222),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 58/126 (47%), Positives = 76/126 (61%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSA++AIL DE DA     A+A+  VR +S ASYLE  IV++S+      R LD  
Sbjct  1    MVIDTSALVAILTDEPDAELLEGAVADDPVRTMSTASYLETAIVIESRFGEPGGRELDLW  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +  A   +  V   QA  AR AY  +G+G  H AGLN+GDC SYALA    +PLL+KG  
Sbjct  61   LHRASVALVAVDADQADAARLAYRRYGKGR-HRAGLNYGDCFSYALAKVSGQPLLFKGEA  119

Query  121  FGHTGV  126
            F  T V
Sbjct  120  FRLTDV  125


>gi|226227509|ref|YP_002761615.1| hypothetical protein GAU_2103 [Gemmatimonas aurantiaca T-27]
 gi|226090700|dbj|BAH39145.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length=130

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 51/128 (40%), Positives = 76/128 (60%), Gaps = 1/128 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +I+ TS+++A+ R+  +A+A   A+  + +R +SAA+ +E  +VL  +R       LD L
Sbjct  1    MILTTSSLVALWRNTAEASALHTAIMRSPMRLISAATVVEAAMVLMGERRGGSDLELDAL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + E E  V P TE  A  AR A   +GRG  H AGL FGDC++YALA    EP+L  G+ 
Sbjct  61   LRELEVTVVPFTEDHAHRAREAARTYGRGR-HAAGLTFGDCIAYALAGATGEPVLGAGDQ  119

Query  121  FGHTGVQR  128
            F  T ++R
Sbjct  120  FTRTDIER  127


>gi|218533403|ref|YP_002424218.1| PilT protein [Methylobacterium chloromethanicum CM4]
 gi|218525706|gb|ACK86290.1| PilT protein domain protein [Methylobacterium chloromethanicum 
CM4]
Length=133

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 55/133 (42%), Positives = 75/133 (57%), Gaps = 3/133 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLD---SQRDPVISRAL  57
            + +DTSA++AIL DE +AAA+   +  +  R   A   LE  I +        PV     
Sbjct  1    MFIDTSAVVAILADEPEAAAFLACIEASKHRETGAHVRLEATINVARILGLPVPVAQDLY  60

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
            D  +  A   V P+++  AR A AA+  +G+G GHPA LNF DCLSYA A   R P+L+K
Sbjct  61   DAFLATAGITVVPISDAVARRAVAAFETYGKGRGHPAQLNFADCLSYACAASYRAPILFK  120

Query  118  GNDFGHTGVQRAL  130
            G DF HT ++ AL
Sbjct  121  GRDFTHTDLKIAL  133


>gi|337266992|ref|YP_004611047.1| PilT protein domain-containing protein [Mesorhizobium opportunistum 
WSM2075]
 gi|336027302|gb|AEH86953.1| PilT protein domain protein [Mesorhizobium opportunistum WSM2075]
Length=129

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 51/130 (40%), Positives = 74/130 (57%), Gaps = 1/130 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +I+D+S ++AILR E     +  A+  A+ R L A ++LE  +VL   R   I   LD  
Sbjct  1    MIIDSSVLVAILRLEPAYERFVLAITQANRRLLPAPTFLETTMVLAGGRQDEILDRLDSF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +  A     P T   A +AR A+  +G+G  HPA LNFGDC++YA A     PLL+KG+D
Sbjct  61   LHTASIETVPFTADHAAVARQAFLRYGKGR-HPAALNFGDCIAYATARLEAMPLLFKGDD  119

Query  121  FGHTGVQRAL  130
            F  T ++ A+
Sbjct  120  FRLTDIEPAV  129


>gi|316934115|ref|YP_004109097.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315601829|gb|ADU44364.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=126

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 53/121 (44%), Positives = 73/121 (61%), Gaps = 1/121 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTS I+AI  DE DAAA    +A+  VR +SAA+ LE  IVL+++      R  D  
Sbjct  1    MVIDTSVIVAIALDEPDAAALEARIADDPVRLISAATVLEATIVLETKLGDAGGREFDLW  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + +    + PV   Q   AR A+   G+G  H A LN+GDC ++ALAI R EPLL+KG D
Sbjct  61   LLKIGAEIVPVDAEQMEAARRAWRRTGKGR-HAADLNYGDCFAHALAITRGEPLLYKGED  119

Query  121  F  121
            F
Sbjct  120  F  120


>gi|46198433|ref|YP_004100.1| hypothetical protein TTC0125 [Thermus thermophilus HB27]
 gi|46196055|gb|AAS80473.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length=130

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 54/124 (44%), Positives = 74/124 (60%), Gaps = 1/124 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++D SA++A+L  E+      + L      +++A +  E GIVL ++        L EL
Sbjct  1    MVLDASALLAVLFREEGYEELLEELRRTRPHKVAAPTLAEAGIVLGARLGFERVHLLFEL  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            + E +  + P TER AR A +AY  +GRG  HPAGLNFGDCLSYALA    EPLL+KG D
Sbjct  61   LTELQAEIVPFTERHAREAISAYRRYGRGR-HPAGLNFGDCLSYALARVEGEPLLYKGQD  119

Query  121  FGHT  124
            F  T
Sbjct  120  FDRT  123


>gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycobacterium tuberculosis H37Rv]
 gi|15840025|ref|NP_335062.1| hypothetical protein MT0652 [Mycobacterium tuberculosis CDC1551]
 gi|31791806|ref|NP_854299.1| hypothetical protein Mb0640 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=131

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 77/126 (62%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSA++A+L DE DA  +  A+    +R +S ASYLE  +V++++      R LD  
Sbjct  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +  A   +  V   QA  ARAAY  +G+G  H AGLN+GDC SY LA    +PLL+KG D
Sbjct  61   LHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFKGED  119

Query  121  FGHTGV  126
            F HT +
Sbjct  120  FQHTDI  125


>gi|218295220|ref|ZP_03496056.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244423|gb|EED10948.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=130

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 75/126 (60%), Gaps = 5/126 (3%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQR--DPVISRALD  58
            +++DTSA++AIL  E+      + +  A  R+++A +  E GIVL ++   + V      
Sbjct  1    MVLDTSALLAILFREEGYEDLLEEIRRAHPRKVAAPTLAEAGIVLGARLGFERVYLLLAL  60

Query  59   ELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKG  118
                +AE +  P +E  AR A +AY  +GRG  HPAGLNFGDCLSYALA    EPLL+KG
Sbjct  61   LSELQAEVI--PFSEAHAREAISAYRRYGRGR-HPAGLNFGDCLSYALAKVEGEPLLYKG  117

Query  119  NDFGHT  124
             DF  T
Sbjct  118  EDFDRT  123


>gi|325293169|ref|YP_004279033.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
 gi|325061022|gb|ADY64713.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
Length=127

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 56/130 (44%), Positives = 75/130 (58%), Gaps = 4/130 (3%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSA++AIL DE  A A A AL   +   +SA +  E   V+ +QR    SR L+ L
Sbjct  2    MVIDTSALLAILLDEPTADACAMALDTDEPLLISAGTLAEA--VIAAQRRGR-SRELEML  58

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            IE     ++PVT +  R    AY  +G+G  HPAGLNFGDC +Y LA     PLL+ GND
Sbjct  59   IEGLSVEIKPVTAKSIRGISEAYRIWGKGI-HPAGLNFGDCFAYELAKAEGCPLLYVGND  117

Query  121  FGHTGVQRAL  130
            F  T +   L
Sbjct  118  FSQTDISGLL  127


>gi|338822860|gb|EGP56828.1| PilT domain-containing protein [Agrobacterium tumefaciens F2]
Length=127

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 57/130 (44%), Positives = 73/130 (57%), Gaps = 4/130 (3%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSA++AIL DE  A A   AL   +   +SA +  E  IV  +QR   + R LD L
Sbjct  2    IVIDTSALMAILLDEPTADACTAALETDEPLLISAGTLAEAMIV--AQRRNRV-RELDML  58

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            IE     V  VT + A     AY  +G+G  HPAGLNFGDC +Y LA     PLL+ GND
Sbjct  59   IEGLSIDVRHVTPKSAHGVSEAYRIWGKGI-HPAGLNFGDCFAYDLAKTEGCPLLYVGND  117

Query  121  FGHTGVQRAL  130
            F  T +  AL
Sbjct  118  FSQTDIVSAL  127


>gi|254431434|ref|ZP_05045137.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
 gi|197625887|gb|EDY38446.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
Length=133

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 58/130 (45%), Positives = 81/130 (63%), Gaps = 1/130 (0%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++D SA++AIL +E +  A+ +A+A A+V  LSAAS +E  IV++ +  P     LD  
Sbjct  1    MVIDPSALVAILLNEPERRAFIEAIAAAEVCWLSAASLVELSIVIEVKLGPDGLDDLDLF  60

Query  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120
            +  A          QA +ARAA+  FG+G  HPAGLN GDC +YALA  R  PLL+KG D
Sbjct  61   LATAGVETVAFDHDQALIARAAFQRFGKGR-HPAGLNLGDCCAYALARVREAPLLFKGRD  119

Query  121  FGHTGVQRAL  130
            F HT ++ AL
Sbjct  120  FVHTDIRSAL  129


>gi|254558657|ref|YP_003065752.1| hypothetical protein METDI0004 [Methylobacterium extorquens DM4]
 gi|254265935|emb|CAX21684.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length=134

 Score = 84.0 bits (206),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 56/133 (43%), Positives = 74/133 (56%), Gaps = 3/133 (2%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---L  57
            + VD SAI+AI+  E  A      L  A VR  SA + LE  + L       I++A   +
Sbjct  1    MFVDASAIVAIIAREPQAETLTARLEEAPVRYTSAVAVLETVMALRRLGAGSIAQAEQLV  60

Query  58   DELIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWK  117
              L+E A+    P+T R++  A AAYA +G+G GHPA LN GDC +YA A  R  PLL+ 
Sbjct  61   RHLLEHADIEEVPITTRESAAAIAAYARYGKGQGHPAQLNLGDCFAYACARTRNVPLLFV  120

Query  118  GNDFGHTGVQRAL  130
            GNDF  T +  AL
Sbjct  121  GNDFSQTDIAAAL  133


>gi|167648431|ref|YP_001686094.1| PilT domain-containing protein [Caulobacter sp. K31]
 gi|167350861|gb|ABZ73596.1| PilT protein domain protein [Caulobacter sp. K31]
Length=131

 Score = 84.0 bits (206),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 53/133 (40%), Positives = 75/133 (57%), Gaps = 6/133 (4%)

Query  1    VIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60
            +++DTSA++AI  +E +  ++ + L  AD   +S  +Y+E G+VL  +R        DE 
Sbjct  3    LVIDTSALVAIATEEPECDSFIEVLEAADNLLISPMNYVEAGVVLVGRRFFPSRETFDEW  62

Query  61   IEEAEFVV--EPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKG  118
            +      V  EPV +    LA  AY  FG+G  HPA LN  DC +YALA     PLL+KG
Sbjct  63   LSNYRIQVAAEPVIDA---LALDAYLSFGKGR-HPAKLNLADCFAYALAKQLDAPLLYKG  118

Query  119  NDFGHTGVQRALD  131
            +DF  T V+ ALD
Sbjct  119  DDFPLTDVRSALD  131


>gi|90425419|ref|YP_533789.1| PilT protein [Rhodopseudomonas palustris BisB18]
 gi|90107433|gb|ABD89470.1| PilT protein [Rhodopseudomonas palustris BisB18]
Length=123

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 48/108 (45%), Positives = 68/108 (63%), Gaps = 3/108 (2%)

Query  3    VDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRA---LDE  59
            +D+S +IAI R E DAA +A  +A  D   +SAA+ +E  IVL   +D   ++A   LD+
Sbjct  1    MDSSTVIAIFRQEQDAAQFARRIAEDDQPMMSAANLVETSIVLRGLKDIAPAKAERWLDD  60

Query  60   LIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALA  107
             I  A   +EPVT  QA+LAR+A+  FG+G+ H A LN+GDC +  LA
Sbjct  61   FIAAAGIRIEPVTADQAQLARSAHLRFGKGTEHRAALNYGDCFADGLA  108


>gi|340626995|ref|YP_004745447.1| hypothetical protein MCAN_20021 [Mycobacterium canettii CIPT 
140010059]
 gi|340005185|emb|CCC44334.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=139

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 51/125 (41%), Positives = 69/125 (56%), Gaps = 2/125 (1%)

Query  1    VIVDTSAIIAILRDE-DDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDE  59
            +IVDTSA++A+++ E   A   A ALA AD   +SA +  EC IVL ++  PV     + 
Sbjct  1    MIVDTSAVVALVQGERPHATLVAAALAGADSPVMSAPTVAECLIVLTARHGPVARTIFER  60

Query  60   LIEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGN  119
            L  E    V   T   A   + A+  +G+G  H A LNFGDC++YA A    +PLL  GN
Sbjct  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN  119

Query  120  DFGHT  124
            DF  T
Sbjct  120  DFPQT  124



Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130457467840




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40