BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0609A

Length=75
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|31791792|ref|NP_854285.1|  hypothetical protein Mb0626 [Mycoba...   152    1e-35
gi|289441999|ref|ZP_06431743.1|  conserved hypothetical protein [...   149    1e-34
gi|15840010|ref|NP_335047.1|  hypothetical protein MT0638.1 [Myco...   117    7e-25
gi|15607752|ref|NP_215126.1|  hypothetical protein Rv0612 [Mycoba...  49.7    1e-04
gi|308231600|ref|ZP_07413056.2|  hypothetical protein TMAG_02492 ...  49.7    2e-04
gi|307083110|ref|ZP_07492223.1|  hypothetical protein TMLG_03359 ...  42.7    0.020
gi|260907600|ref|ZP_05915922.1|  hypothetical protein BlinB_19847...  38.9    0.29 
gi|333989262|ref|YP_004521876.1|  hypothetical protein JDM601_062...  34.7    4.6  


>gi|31791792|ref|NP_854285.1| hypothetical protein Mb0626 [Mycobacterium bovis AF2122/97]
 gi|57116759|ref|YP_177628.1| hypothetical protein Rv0609A [Mycobacterium tuberculosis H37Rv]
 gi|121636528|ref|YP_976751.1| hypothetical protein BCG_0656 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 27 more sequence titles
 Length=75

 Score =  152 bits (385),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 74/75 (99%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  1   VEGQRLWAHRRPKGTGSAVIDVSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCGRGPG  60
           +EGQRLWAHRRPKGTGSAVIDVSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCGRGPG
Sbjct  1   MEGQRLWAHRRPKGTGSAVIDVSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCGRGPG  60

Query  61  NATGSGRLPKPLRHS  75
           NATGSGRLPKPLRHS
Sbjct  61  NATGSGRLPKPLRHS  75


>gi|289441999|ref|ZP_06431743.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289568544|ref|ZP_06448771.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289749108|ref|ZP_06508486.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289414918|gb|EFD12158.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289542298|gb|EFD45946.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289689695|gb|EFD57124.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=75

 Score =  149 bits (377),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 73/75 (98%), Positives = 74/75 (99%), Gaps = 0/75 (0%)

Query  1   VEGQRLWAHRRPKGTGSAVIDVSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCGRGPG  60
           +EGQRLWAHRRPKGTGSAVIDVSLARRCEAHGYDYFRS DPVAAAGFVVSAVWSCGRGPG
Sbjct  1   MEGQRLWAHRRPKGTGSAVIDVSLARRCEAHGYDYFRSVDPVAAAGFVVSAVWSCGRGPG  60

Query  61  NATGSGRLPKPLRHS  75
           NATGSGRLPKPLRHS
Sbjct  61  NATGSGRLPKPLRHS  75


>gi|15840010|ref|NP_335047.1| hypothetical protein MT0638.1 [Mycobacterium tuberculosis CDC1551]
 gi|13880153|gb|AAK44861.1| hypothetical protein MT0638.1 [Mycobacterium tuberculosis CDC1551]
Length=57

 Score =  117 bits (292),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 56/57 (99%), Positives = 57/57 (100%), Gaps = 0/57 (0%)

Query  19  VIDVSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCGRGPGNATGSGRLPKPLRHS  75
           +IDVSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCGRGPGNATGSGRLPKPLRHS
Sbjct  1   MIDVSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCGRGPGNATGSGRLPKPLRHS  57


>gi|15607752|ref|NP_215126.1| hypothetical protein Rv0612 [Mycobacterium tuberculosis H37Rv]
 gi|15840014|ref|NP_335051.1| hypothetical protein MT0642 [Mycobacterium tuberculosis CDC1551]
 gi|31791795|ref|NP_854288.1| hypothetical protein Mb0629 [Mycobacterium bovis AF2122/97]
 60 more sequence titles
 Length=201

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/35 (75%), Positives = 28/35 (80%), Gaps = 2/35 (5%)

Query  22   VSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCG  56
            + LAR  EA GYDYFRSDDPVAAAGFVVS V + G
Sbjct  152  IDLAR--EADGYDYFRSDDPVAAAGFVVSDVAAAG  184


>gi|308231600|ref|ZP_07413056.2| hypothetical protein TMAG_02492 [Mycobacterium tuberculosis SUMu001]
 gi|308369992|ref|ZP_07419888.2| hypothetical protein TMBG_03473 [Mycobacterium tuberculosis SUMu002]
 gi|308370461|ref|ZP_07421579.2| hypothetical protein TMCG_03818 [Mycobacterium tuberculosis SUMu003]
 15 more sequence titles
 Length=182

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/35 (75%), Positives = 28/35 (80%), Gaps = 2/35 (5%)

Query  22   VSLARRCEAHGYDYFRSDDPVAAAGFVVSAVWSCG  56
            + LAR  EA GYDYFRSDDPVAAAGFVVS V + G
Sbjct  133  IDLAR--EADGYDYFRSDDPVAAAGFVVSDVAAAG  165


>gi|307083110|ref|ZP_07492223.1| hypothetical protein TMLG_03359 [Mycobacterium tuberculosis SUMu012]
 gi|308367186|gb|EFP56037.1| hypothetical protein TMLG_03359 [Mycobacterium tuberculosis SUMu012]
Length=189

 Score = 42.7 bits (99),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 21/26 (81%), Positives = 22/26 (85%), Gaps = 2/26 (7%)

Query  22   VSLARRCEAHGYDYFRSDDPVAAAGF  47
            + LAR  EA GYDYFRSDDPVAAAGF
Sbjct  152  IDLAR--EADGYDYFRSDDPVAAAGF  175


>gi|260907600|ref|ZP_05915922.1| hypothetical protein BlinB_19847 [Brevibacterium linens BL2]
Length=299

 Score = 38.9 bits (89),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 21/48 (44%), Positives = 28/48 (59%), Gaps = 3/48 (6%)

Query  22   VSLARRCEAHGYDYFRSDDPVAAAGFVVS-AVWSCGRGPGNATGSGRL  68
            ++LA  CE  G+DYFRS+DP+ A+  V+S  V     G G A G   L
Sbjct  129  ITLA--CETEGFDYFRSEDPIEASKVVISEMVDQLWTGIGRALGPEEL  174


>gi|333989262|ref|YP_004521876.1| hypothetical protein JDM601_0622 [Mycobacterium sp. JDM601]
 gi|333485230|gb|AEF34622.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=256

 Score = 34.7 bits (78),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 20/25 (80%), Gaps = 4/25 (16%)

Query  35   YFRSDDPVAAAGFVVS----AVWSC  55
            YFRS+DPV+AAGFVVS    AVW+ 
Sbjct  137  YFRSEDPVSAAGFVVSDAAAAVWNA  161



Lambda     K      H
   0.320    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131059142040




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40