BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0615

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|326905163|gb|EGE52096.1|  hypothetical protein TBPG_03095 [Myc...   153    7e-36
gi|15840017|ref|NP_335054.1|  hypothetical protein MT0645 [Mycoba...   151    4e-35
gi|15607755|ref|NP_215129.1|  integral membrane protein [Mycobact...   150    8e-35
gi|148821817|ref|YP_001286571.1|  hypothetical protein TBFG_10626...   150    8e-35
gi|240170350|ref|ZP_04749009.1|  hypothetical protein MkanA1_1364...  98.6    3e-19
gi|183980149|ref|YP_001848440.1|  hypothetical protein MMAR_0115 ...  41.2    0.049
gi|345330792|gb|EGW63256.1|  colicin-Ia [Escherichia coli STEC_B2F1]  35.4    3.2  


>gi|326905163|gb|EGE52096.1| hypothetical protein TBPG_03095 [Mycobacterium tuberculosis W-148]
Length=346

 Score =  153 bits (387),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1    VMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL  60
            VMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL
Sbjct  267  VMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL  326

Query  61   VALGGPLVVVNHRRAERSRG  80
            VALGGPLVVVNHRRAERSRG
Sbjct  327  VALGGPLVVVNHRRAERSRG  346


>gi|15840017|ref|NP_335054.1| hypothetical protein MT0645 [Mycobacterium tuberculosis CDC1551]
 gi|289552868|ref|ZP_06442078.1| membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289749114|ref|ZP_06508492.1| membrane protein [Mycobacterium tuberculosis T92]
 26 more sequence titles
 Length=86

 Score =  151 bits (381),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   VMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL  60
           VMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL
Sbjct  7   VMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL  66

Query  61  VALGGPLVVVNHRRAERSRG  80
           VALGGPLVVVNHRRAERSRG
Sbjct  67  VALGGPLVVVNHRRAERSRG  86


>gi|15607755|ref|NP_215129.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|31791798|ref|NP_854291.1| integral membrane protein [Mycobacterium bovis AF2122/97]
 gi|121636534|ref|YP_976757.1| putative integral membrane protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 36 more sequence titles
 Length=80

 Score =  150 bits (378),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 79/80 (99%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   VMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL  60
           +MDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL
Sbjct  1   MMDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFL  60

Query  61  VALGGPLVVVNHRRAERSRG  80
           VALGGPLVVVNHRRAERSRG
Sbjct  61  VALGGPLVVVNHRRAERSRG  80


>gi|148821817|ref|YP_001286571.1| hypothetical protein TBFG_10626 [Mycobacterium tuberculosis F11]
 gi|167969040|ref|ZP_02551317.1| hypothetical protein MtubH3_13842 [Mycobacterium tuberculosis 
H37Ra]
 gi|254230951|ref|ZP_04924278.1| hypothetical protein TBCG_00610 [Mycobacterium tuberculosis C]
 7 more sequence titles
 Length=79

 Score =  150 bits (378),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)

Query  2   MDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFLV  61
           MDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFLV
Sbjct  1   MDVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAFLV  60

Query  62  ALGGPLVVVNHRRAERSRG  80
           ALGGPLVVVNHRRAERSRG
Sbjct  61  ALGGPLVVVNHRRAERSRG  79


>gi|240170350|ref|ZP_04749009.1| hypothetical protein MkanA1_13640 [Mycobacterium kansasii ATCC 
12478]
Length=88

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 54/78 (70%), Positives = 57/78 (74%), Gaps = 1/78 (1%)

Query  3   DVLAAGIAAGALTLAAWGAWRPHYRAASYLVAGAVELALIGLLVVTGQTLMAISVAF-LV  61
           DVL A I +GA  LA WGAWRPHYR ASYLVAGAV L LI  LVVTGQT M I  AF LV
Sbjct  3   DVLEAAILSGAFVLALWGAWRPHYRVASYLVAGAVTLVLIAGLVVTGQTNMTIVSAFLLV  62

Query  62  ALGGPLVVVNHRRAERSR  79
           A+  P+ V NHRRAER R
Sbjct  63  AMFVPMTVFNHRRAERGR  80


>gi|183980149|ref|YP_001848440.1| hypothetical protein MMAR_0115 [Mycobacterium marinum M]
 gi|183173475|gb|ACC38585.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=86

 Score = 41.2 bits (95),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 37/76 (49%), Positives = 46/76 (61%), Gaps = 6/76 (7%)

Query  1   VMDVLAAGIAAGALTLAAWGAW------RPHYRAASYLVAGAVELALIGLLVVTGQTLMA  54
           + D+L A I AGA  LA WGA       RPHY  ASYL AG V +ALI +L+ TG+T   
Sbjct  1   MTDLLVAAILAGAFGLALWGAGAFGLARRPHYPLASYLAAGGVVVALIVVLLTTGRTDWV  60

Query  55  ISVAFLVALGGPLVVV  70
           I  A  +AL  PL+V+
Sbjct  61  IVSAGALALFIPLIVI  76


>gi|345330792|gb|EGW63256.1| colicin-Ia [Escherichia coli STEC_B2F1]
Length=424

 Score = 35.4 bits (80),  Expect = 3.2, Method: Composition-based stats.
 Identities = 22/73 (31%), Positives = 33/73 (46%), Gaps = 12/73 (16%)

Query  8    GIAAGALTLAAW----------GAWRPHYRAASYLVAGAVELALIGLL--VVTGQTLMAI  55
            G A    +LA W          G WRP +     ++AG    AL+ L+  ++TG  L  I
Sbjct  338  GYAGKFTSLADWITEFGKAARTGNWRPFFVKTETIIAGNAATALVALVFSILTGSALGII  397

Query  56   SVAFLVALGGPLV  68
                L+A+ G L+
Sbjct  398  GYGLLMAVTGALI  410



Lambda     K      H
   0.326    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128850890930




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40