BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0616c

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607756|ref|NP_215130.1|  hypothetical protein Rv0616c [Mycob...   179    2e-43
gi|15840018|ref|NP_335055.1|  hypothetical protein MT0645.1 [Myco...   155    2e-36


>gi|15607756|ref|NP_215130.1| hypothetical protein Rv0616c [Mycobacterium tuberculosis H37Rv]
 gi|31791799|ref|NP_854292.1| hypothetical protein Mb0633c [Mycobacterium bovis AF2122/97]
 gi|121636535|ref|YP_976758.1| hypothetical protein BCG_0663c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 42 more sequence titles
 Length=88

 Score =  179 bits (453),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   VRIPGNRQCLLVQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAH  60
           +RIPGNRQCLLVQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAH
Sbjct  1   MRIPGNRQCLLVQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAH  60

Query  61  EPCWVAARGLASQASRAMSATYRPSSFI  88
           EPCWVAARGLASQASRAMSATYRPSSFI
Sbjct  61  EPCWVAARGLASQASRAMSATYRPSSFI  88


>gi|15840018|ref|NP_335055.1| hypothetical protein MT0645.1 [Mycobacterium tuberculosis CDC1551]
 gi|13880162|gb|AAK44869.1| hypothetical protein MT0645.1 [Mycobacterium tuberculosis CDC1551]
 gi|328457335|gb|AEB02758.1| hypothetical protein TBSG_00628 [Mycobacterium tuberculosis KZN 
4207]
Length=77

 Score =  155 bits (391),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 76/77 (99%), Positives = 77/77 (100%), Gaps = 0/77 (0%)

Query  12  VQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAHEPCWVAARGLA  71
           +QVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAHEPCWVAARGLA
Sbjct  1   MQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAHEPCWVAARGLA  60

Query  72  SQASRAMSATYRPSSFI  88
           SQASRAMSATYRPSSFI
Sbjct  61  SQASRAMSATYRPSSFI  77



Lambda     K      H
   0.320    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130095868320




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40