BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0616c Length=88 Score E Sequences producing significant alignments: (Bits) Value gi|15607756|ref|NP_215130.1| hypothetical protein Rv0616c [Mycob... 179 2e-43 gi|15840018|ref|NP_335055.1| hypothetical protein MT0645.1 [Myco... 155 2e-36 >gi|15607756|ref|NP_215130.1| hypothetical protein Rv0616c [Mycobacterium tuberculosis H37Rv] gi|31791799|ref|NP_854292.1| hypothetical protein Mb0633c [Mycobacterium bovis AF2122/97] gi|121636535|ref|YP_976758.1| hypothetical protein BCG_0663c [Mycobacterium bovis BCG str. Pasteur 1173P2] 42 more sequence titlesLength=88 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%) Query 1 VRIPGNRQCLLVQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAH 60 +RIPGNRQCLLVQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAH Sbjct 1 MRIPGNRQCLLVQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAH 60 Query 61 EPCWVAARGLASQASRAMSATYRPSSFI 88 EPCWVAARGLASQASRAMSATYRPSSFI Sbjct 61 EPCWVAARGLASQASRAMSATYRPSSFI 88 >gi|15840018|ref|NP_335055.1| hypothetical protein MT0645.1 [Mycobacterium tuberculosis CDC1551] gi|13880162|gb|AAK44869.1| hypothetical protein MT0645.1 [Mycobacterium tuberculosis CDC1551] gi|328457335|gb|AEB02758.1| hypothetical protein TBSG_00628 [Mycobacterium tuberculosis KZN 4207] Length=77 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/77 (99%), Positives = 77/77 (100%), Gaps = 0/77 (0%) Query 12 VQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAHEPCWVAARGLA 71 +QVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAHEPCWVAARGLA Sbjct 1 MQVLRQVDGSAHRLILTSLHRDARADAHRYSNGTDHAGRAADEPAETAHEPCWVAARGLA 60 Query 72 SQASRAMSATYRPSSFI 88 SQASRAMSATYRPSSFI Sbjct 61 SQASRAMSATYRPSSFI 77 Lambda K H 0.320 0.129 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130095868320 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40