BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0621
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
gi|148821823|ref|YP_001286577.1| hypothetical protein TBFG_10632... 701 0.0
gi|15607761|ref|NP_215135.1| hypothetical protein Rv0621 [Mycoba... 701 0.0
gi|289573223|ref|ZP_06453450.1| membrane protein [Mycobacterium ... 701 0.0
gi|339630689|ref|YP_004722331.1| hypothetical protein MAF_06280 ... 701 0.0
gi|31791803|ref|NP_854296.1| hypothetical protein Mb0637 [Mycoba... 701 0.0
gi|323720976|gb|EGB30041.1| membrane protein [Mycobacterium tube... 674 0.0
gi|167969049|ref|ZP_02551326.1| hypothetical protein MtubH3_1388... 627 1e-177
gi|339293659|gb|AEJ45770.1| hypothetical protein CCDC5079_0580 [... 528 5e-148
gi|120402141|ref|YP_951970.1| hypothetical protein Mvan_1128 [My... 316 4e-84
gi|145225760|ref|YP_001136438.1| hypothetical protein Mflv_5184 ... 290 2e-76
gi|315446116|ref|YP_004078995.1| hypothetical protein Mspyr1_461... 290 3e-76
gi|343928214|ref|ZP_08767669.1| hypothetical protein GOALK_110_0... 129 6e-28
gi|229489780|ref|ZP_04383637.1| pyrrolo-quinoline quinone [Rhodo... 121 1e-25
gi|262201226|ref|YP_003272434.1| pyrrolo-quinoline quinone beta-... 114 3e-23
gi|126433404|ref|YP_001069095.1| Pyrrolo-quinoline quinone [Myco... 108 1e-21
gi|333920517|ref|YP_004494098.1| pyrrolo-quinoline quinone [Amyc... 102 7e-20
gi|254774873|ref|ZP_05216389.1| hypothetical protein MaviaA2_094... 101 2e-19
gi|336461799|gb|EGO40657.1| serine/threonine protein kinase [Myc... 100 3e-19
gi|41408124|ref|NP_960960.1| hypothetical protein MAP2026 [Mycob... 100 3e-19
gi|254820584|ref|ZP_05225585.1| hypothetical protein MintA_11686... 95.5 1e-17
gi|118472741|ref|YP_885582.1| serine/threonine protein kinase [M... 94.4 3e-17
gi|260906638|ref|ZP_05914960.1| hypothetical protein BlinB_15007... 91.7 2e-16
gi|325067867|ref|ZP_08126540.1| pyrrolo-quinoline quinone beta-p... 90.1 5e-16
gi|126433399|ref|YP_001069090.1| protein kinase [Mycobacterium s... 89.0 1e-15
gi|108797772|ref|YP_637969.1| serine/threonine protein kinase [M... 89.0 1e-15
gi|343521709|ref|ZP_08758675.1| hypothetical protein HMPREF9058_... 87.0 5e-15
gi|326773818|ref|ZP_08233100.1| serine/arginine repetitive matri... 84.7 2e-14
gi|329946099|ref|ZP_08293735.1| conserved domain protein [Actino... 83.2 7e-14
gi|227496930|ref|ZP_03927185.1| conserved hypothetical protein [... 76.3 7e-12
gi|310286810|ref|YP_003938068.1| hypothetical protein BBIF_0289 ... 73.6 5e-11
gi|311063708|ref|YP_003970433.1| hypothetical protein BBPR_0270 ... 71.6 2e-10
gi|326384036|ref|ZP_08205719.1| pyrrolo-quinoline quinone beta-p... 66.6 6e-09
gi|261338595|ref|ZP_05966479.1| conserved hypothetical protein [... 65.5 1e-08
gi|296140233|ref|YP_003647476.1| serine/threonine protein kinase... 63.5 5e-08
gi|260904560|ref|ZP_05912882.1| protein kinase [Brevibacterium l... 63.2 6e-08
gi|331699109|ref|YP_004335348.1| hypothetical protein Psed_5361 ... 62.8 7e-08
gi|295396536|ref|ZP_06806694.1| serine/threonine-protein kinase ... 56.2 8e-06
gi|225352545|ref|ZP_03743568.1| hypothetical protein BIFPSEUDO_0... 52.8 9e-05
gi|297625864|ref|YP_003687627.1| hypothetical protein PFREUD_065... 52.4 1e-04
gi|289177634|gb|ADC84880.1| Hypothetical protein BIF_00444 [Bifi... 52.0 1e-04
gi|330468219|ref|YP_004405962.1| hypothetical protein VAB18032_2... 52.0 2e-04
gi|345283361|gb|AEN77215.1| hypothetical protein BLC1_1445 [Bifi... 51.6 2e-04
gi|219683174|ref|YP_002469557.1| hypothetical protein BLA_0688 [... 51.6 2e-04
gi|239620731|ref|ZP_04663762.1| predicted protein [Bifidobacteri... 51.2 3e-04
gi|183602726|ref|ZP_02964089.1| hypothetical protein BIFLAC_0080... 50.8 3e-04
gi|296454579|ref|YP_003661722.1| hypothetical protein BLJ_1448 [... 49.7 7e-04
gi|46190309|ref|ZP_00121670.2| hypothetical protein Blon03001611... 48.9 0.001
gi|23464654|ref|NP_695257.1| hypothetical protein BL0026 [Bifido... 48.1 0.002
gi|295394904|ref|ZP_06805117.1| conserved hypothetical protein [... 46.2 0.008
gi|229817078|ref|ZP_04447360.1| hypothetical protein BIFANG_0233... 46.2 0.008
>gi|148821823|ref|YP_001286577.1| hypothetical protein TBFG_10632 [Mycobacterium tuberculosis F11]
gi|253797559|ref|YP_003030560.1| hypothetical protein TBMG_00630 [Mycobacterium tuberculosis KZN
1435]
gi|254363576|ref|ZP_04979622.1| hypothetical membrane protein [Mycobacterium tuberculosis str.
Haarlem]
10 more sequence titles
Length=357
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/354 (100%), Positives = 354/354 (100%), Gaps = 0/354 (0%)
Query 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE
Sbjct 4 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 63
Query 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF
Sbjct 64 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 123
Query 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA
Sbjct 124 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 183
Query 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA
Sbjct 184 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 243
Query 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK
Sbjct 244 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 303
Query 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR
Sbjct 304 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 357
>gi|15607761|ref|NP_215135.1| hypothetical protein Rv0621 [Mycobacterium tuberculosis H37Rv]
gi|15840022|ref|NP_335059.1| hypothetical protein MT0649 [Mycobacterium tuberculosis CDC1551]
gi|148660393|ref|YP_001281916.1| hypothetical protein MRA_0630 [Mycobacterium tuberculosis H37Ra]
12 more sequence titles
Length=354
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/354 (100%), Positives = 354/354 (100%), Gaps = 0/354 (0%)
Query 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE
Sbjct 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
Query 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF
Sbjct 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
Query 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA
Sbjct 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
Query 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA
Sbjct 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
Query 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK
Sbjct 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
Query 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR
Sbjct 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
>gi|289573223|ref|ZP_06453450.1| membrane protein [Mycobacterium tuberculosis K85]
gi|289537654|gb|EFD42232.1| membrane protein [Mycobacterium tuberculosis K85]
Length=388
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/354 (100%), Positives = 354/354 (100%), Gaps = 0/354 (0%)
Query 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE
Sbjct 4 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 63
Query 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF
Sbjct 64 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 123
Query 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA
Sbjct 124 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 183
Query 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA
Sbjct 184 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 243
Query 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK
Sbjct 244 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 303
Query 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR
Sbjct 304 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 357
>gi|339630689|ref|YP_004722331.1| hypothetical protein MAF_06280 [Mycobacterium africanum GM041182]
gi|339330045|emb|CCC25700.1| putative membrane protein [Mycobacterium africanum GM041182]
Length=355
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/354 (100%), Positives = 354/354 (100%), Gaps = 0/354 (0%)
Query 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE
Sbjct 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
Query 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF
Sbjct 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
Query 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA
Sbjct 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
Query 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA
Sbjct 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
Query 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK
Sbjct 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
Query 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR
Sbjct 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
>gi|31791803|ref|NP_854296.1| hypothetical protein Mb0637 [Mycobacterium bovis AF2122/97]
gi|121636540|ref|YP_976763.1| hypothetical protein BCG_0667 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989012|ref|YP_002643699.1| hypothetical protein JTY_0637 [Mycobacterium bovis BCG str. Tokyo
172]
14 more sequence titles
Length=385
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/354 (100%), Positives = 354/354 (100%), Gaps = 0/354 (0%)
Query 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE
Sbjct 1 MAGDRGADPGPANVTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEE 60
Query 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF
Sbjct 61 SGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPF 120
Query 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA
Sbjct 121 AQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAA 180
Query 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA
Sbjct 181 GSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSA 240
Query 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK
Sbjct 241 RTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK 300
Query 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR
Sbjct 301 TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
>gi|323720976|gb|EGB30041.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=341
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/341 (99%), Positives = 341/341 (100%), Gaps = 0/341 (0%)
Query 14 VTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFV 73
+TPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFV
Sbjct 1 MTPGADDHAQHASPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFV 60
Query 74 PLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPV 133
PLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPV
Sbjct 61 PLVVLAATLLVVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPV 120
Query 134 LEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIE 193
LEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIE
Sbjct 121 LEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIE 180
Query 194 PGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPA 253
PGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPA
Sbjct 181 PGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPA 240
Query 254 YGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLA 313
YGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLA
Sbjct 241 YGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLA 300
Query 314 LRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
LRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR
Sbjct 301 LRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 341
>gi|167969049|ref|ZP_02551326.1| hypothetical protein MtubH3_13887 [Mycobacterium tuberculosis
H37Ra]
gi|254549580|ref|ZP_05140027.1| hypothetical protein Mtube_03805 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294996137|ref|ZP_06801828.1| hypothetical protein Mtub2_16955 [Mycobacterium tuberculosis
210]
gi|297730097|ref|ZP_06959215.1| hypothetical protein MtubKR_03340 [Mycobacterium tuberculosis
KZN R506]
gi|313657424|ref|ZP_07814304.1| hypothetical protein MtubKV_03330 [Mycobacterium tuberculosis
KZN V2475]
Length=319
Score = 627 bits (1616), Expect = 1e-177, Method: Compositional matrix adjust.
Identities = 318/319 (99%), Positives = 319/319 (100%), Gaps = 0/319 (0%)
Query 36 VNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYA 95
+NAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYA
Sbjct 1 MNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFVPLVVLAATLLVVAVVVTAVGYA 60
Query 96 VTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSA 155
VTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSA
Sbjct 61 VTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSA 120
Query 156 CAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDM 215
CAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDM
Sbjct 121 CAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDM 180
Query 216 LSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPY 275
LSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPY
Sbjct 181 LSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPY 240
Query 276 VRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGP 335
VRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGP
Sbjct 241 VRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGP 300
Query 336 DFWVTVVGPAQPTAAEANR 354
DFWVTVVGPAQPTAAEANR
Sbjct 301 DFWVTVVGPAQPTAAEANR 319
>gi|339293659|gb|AEJ45770.1| hypothetical protein CCDC5079_0580 [Mycobacterium tuberculosis
CCDC5079]
gi|339297299|gb|AEJ49409.1| hypothetical protein CCDC5180_0572 [Mycobacterium tuberculosis
CCDC5180]
Length=271
Score = 528 bits (1360), Expect = 5e-148, Method: Compositional matrix adjust.
Identities = 270/271 (99%), Positives = 271/271 (100%), Gaps = 0/271 (0%)
Query 84 VVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTS 143
+VAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTS
Sbjct 1 MVAVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTS 60
Query 144 DGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLV 203
DGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLV
Sbjct 61 DGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLV 120
Query 204 FPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGA 263
FPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGA
Sbjct 121 FPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGA 180
Query 264 VLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARL 323
VLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARL
Sbjct 181 VLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARL 240
Query 324 VWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
VWSGHWTTFSGPDFWVTVVGPAQPTAAEANR
Sbjct 241 VWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 271
>gi|120402141|ref|YP_951970.1| hypothetical protein Mvan_1128 [Mycobacterium vanbaalenii PYR-1]
gi|119954959|gb|ABM11964.1| putative membrane protein [Mycobacterium vanbaalenii PYR-1]
Length=365
Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 167/329 (51%), Positives = 222/329 (68%), Gaps = 4/329 (1%)
Query 26 SPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFVPLVVLAATLLVV 85
+P V CP GH+NAW+Y+FC +CGSPIGVV +P +++ P R V A +++
Sbjct 8 APMVACPHGHLNAWNYKFCGQCGSPIGVVAFPDDDAVAEDERPLRRRGLAVGGAIAAVLL 67
Query 86 AVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDG 145
AV+V AVG+ +TR + D E A G T G +C P+++AES+D+T+DG
Sbjct 68 AVIVAAVGFLMTRSSTGDDEAAPQA-GGFTPGTVNPAGMVPACTTAPLVQAESVDMTADG 126
Query 146 LAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLVFP 205
+ V AAFMS C GG+ E++++ +TVADG+RD+AAG FDFS PL ++PG ARRTLVFP
Sbjct 127 MTVDAAFMSQCPGGNTEASTSARITVADGQRDIAAGVFDFSTAPLTMKPGETARRTLVFP 186
Query 206 PGMYWRTPDMLSGAPALAATRKGRSDRS-AARGGSARTTMVAAASAAPAYGSINAVAGAV 264
G YWRT +M +GAP L +++ S AA GS R +VA A PA+GSI+ VA AV
Sbjct 187 AGTYWRTTEMFTGAPQLVFHPGEQAEASTAASSGSDR--LVAQTVAQPAHGSIDGVADAV 244
Query 265 LVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
L ELRD+D+ YV +ANRWVPQ+S+K+ GLV G+T TSAD+LRDHL LR+++ G RLV
Sbjct 245 LRELRDADYGYVSGSLANRWVPQISAKKSGLVVNGRTLTSADVLRDHLDLREKYSGVRLV 304
Query 325 WSGHWTTFSGPDFWVTVVGPAQPTAAEAN 353
S WTTFS DFWVTVVG + + AEAN
Sbjct 305 SSAQWTTFSSADFWVTVVGAPKLSPAEAN 333
>gi|145225760|ref|YP_001136438.1| hypothetical protein Mflv_5184 [Mycobacterium gilvum PYR-GCK]
gi|145218246|gb|ABP47650.1| putative membrane protein [Mycobacterium gilvum PYR-GCK]
Length=364
Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/328 (50%), Positives = 209/328 (64%), Gaps = 3/328 (0%)
Query 26 SPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFVPLVVLAATLLVV 85
+P V+CP GH+NAW Y+FC +CGSPIG V +P ++ + P R + L+ A +VV
Sbjct 8 TPMVVCPHGHLNAWHYKFCGQCGSPIGAVAFPDDDPVEVERRPRRRGL-LIGGAVAAVVV 66
Query 86 AVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDG 145
AV + + +D P S A P A + P P+++AES+D+T DG
Sbjct 67 IAAAVAVTVLMAGSSSDDVAVPQSGGFGAGPVDPAGMVPACTTP--PLVQAESVDMTGDG 124
Query 146 LAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLVFP 205
+ V AAFMS CAGGD + +++ +TVADG+RD+AAG FDFSA PL ++PG ARRTLVFP
Sbjct 125 MTVDAAFMSRCAGGDTATAASVRITVADGQRDIAAGIFDFSAAPLTMKPGETARRTLVFP 184
Query 206 PGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGAVL 265
GMYWRT +M SGAP + +SD + A S +VA A A P +GSI+ VA AVL
Sbjct 185 AGMYWRTTEMFSGAPQMVVHPGEQSDATTATASSGSDRLVAHAVAEPEHGSIDGVAEAVL 244
Query 266 VELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVW 325
ELRD+D+ YV IANRWVPQ+S+K+ GLV G T TSAD+LRDH LR + G RLV
Sbjct 245 RELRDADYGYVSTSIANRWVPQISAKKAGLVVDGATITSADVLRDHYGLRAKHSGVRLVS 304
Query 326 SGHWTTFSGPDFWVTVVGPAQPTAAEAN 353
S WTTF DFWVTVVG + + AEAN
Sbjct 305 SAQWTTFDSDDFWVTVVGAPKLSPAEAN 332
>gi|315446116|ref|YP_004078995.1| hypothetical protein Mspyr1_46100 [Mycobacterium sp. Spyr1]
gi|315264419|gb|ADU01161.1| hypothetical protein Mspyr1_46100 [Mycobacterium sp. Spyr1]
Length=364
Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 163/328 (50%), Positives = 208/328 (64%), Gaps = 3/328 (0%)
Query 26 SPTVLCPQGHVNAWDYRFCERCGSPIGVVPWPSEESGTRQTAPARSFVPLVVLAATLLVV 85
+P V+CP GH+NAW Y+FC +CGSPIG V +P ++ + P R + L+ A +VV
Sbjct 8 TPMVVCPHGHLNAWHYKFCGQCGSPIGAVAFPDDDPVEVERRPRRRGL-LIGGAVAAVVV 66
Query 86 AVVVTAVGYAVTRPARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDG 145
AV + + +D P A T P A + P P+++AES+D+T DG
Sbjct 67 LAAAVAVTVLMAGSSSDDVAVPQPGGFGAGTVDPAGMVPACTTP--PLVQAESVDMTGDG 124
Query 146 LAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLVFP 205
+ V AAFMS CAGGD E+ + +TVADG RD+AAG FDFSA PL ++PG ARRTLVFP
Sbjct 125 MTVDAAFMSRCAGGDTEAAPSARITVADGERDIAAGIFDFSAAPLSMKPGETARRTLVFP 184
Query 206 PGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGAVL 265
GMYWRT +M SGAP L ++D + A S +VA A A P +GSI+ VA AVL
Sbjct 185 AGMYWRTTEMFSGAPQLVFHPGEQADATTATVSSGSDRLVAHAVAEPEHGSIDGVAEAVL 244
Query 266 VELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVW 325
ELRD+D+ YV IANRWVPQ+S+K+ GLV G T TSAD+LRDH LR ++ G RLV
Sbjct 245 RELRDADYGYVSASIANRWVPQISAKKAGLVVDGATITSADVLRDHYDLRAKYSGVRLVS 304
Query 326 SGHWTTFSGPDFWVTVVGPAQPTAAEAN 353
S WTTF DFWVTVVG + + AEAN
Sbjct 305 SAQWTTFDSDDFWVTVVGTPKLSPAEAN 332
>gi|343928214|ref|ZP_08767669.1| hypothetical protein GOALK_110_00550 [Gordonia alkanivorans NBRC
16433]
gi|343761912|dbj|GAA14595.1| hypothetical protein GOALK_110_00550 [Gordonia alkanivorans NBRC
16433]
Length=312
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/240 (35%), Positives = 113/240 (48%), Gaps = 13/240 (5%)
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSA 187
C PV +S + GL V+ + C GDV +T++DG VA+GSFDF
Sbjct 42 CGSPPVFTPQSFRTAAGGLVVTMKVTAKCPDGDVLFGPQTRITISDGGGLVASGSFDFRR 101
Query 188 DPLRI---EPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDR----------SA 234
PL + + G L +PPG ++R PD L+ A + DR +A
Sbjct 102 SPLAVPAPDGGAALNLELTYPPGSFFRLPDTLNDANSAGGQYLVECDRGSTPERAPAVTA 161
Query 235 ARGGSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVG 294
G + + A + PA + A + L D+D ++ + NRWV Q+SSK G
Sbjct 162 PASGRSSASSEATDTVFPAGADVTATSVNALRLQADADRAFILANLNNRWVAQLSSKHAG 221
Query 295 LVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
LVA G+TWT IL + LALR RF RL+WS W FS +WVTV P EAN
Sbjct 222 LVADGRTWTDQAILDEFLALRLRFNDVRLLWSDEWPVFSYRGWWVTVAAATFPGPVEANN 281
>gi|229489780|ref|ZP_04383637.1| pyrrolo-quinoline quinone [Rhodococcus erythropolis SK121]
gi|229323290|gb|EEN89054.1| pyrrolo-quinoline quinone [Rhodococcus erythropolis SK121]
Length=773
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/252 (34%), Positives = 118/252 (47%), Gaps = 26/252 (10%)
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSA 187
C P L ++GL V ++C GD+ S AL V++ D + VA+ FDFS
Sbjct 490 CGRTPTLAPVEYRTQAEGLVVLMEMKASCPSGDIVSTDALRVSITDTGQSVASAVFDFSD 549
Query 188 DPLRI------EPGVPARRTLVFPPGMYWRTPDML-----------SGAPALAATRKGRS 230
P+ + +R ++ G +WR P+ L SGA + +G S
Sbjct 550 APIYLPRTDGTNTTNSIQREFLYDLGSFWRLPNTLGESSSLTNSRASGAQLVECEDEGTS 609
Query 231 DRSAARGGSAR----TTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVP 286
D S G ++R T + SA P G + + + L D+D P+V +ANRWV
Sbjct 610 DTSLTSGPASRSDTNTPIRPTRSAQPTTGDVESASLDALRAQADADRPFVIGDLANRWVA 669
Query 287 QVSSKRVGLVAAGKT-----WTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTV 341
Q+SSKRVGL AA WT+A ILR HL LR + RL+WS W TF +W+TV
Sbjct 670 QISSKRVGLDAADINGAQVHWTAAQILRQHLELRLMYPEVRLLWSNEWRTFDLRGWWITV 729
Query 342 VGPAQPTAAEAN 353
G A AN
Sbjct 730 AGLTFADADAAN 741
>gi|262201226|ref|YP_003272434.1| pyrrolo-quinoline quinone beta-propeller repeat-containing protein
[Gordonia bronchialis DSM 43247]
gi|262084573|gb|ACY20541.1| Pyrrolo-quinoline quinone beta-propeller repeat protein [Gordonia
bronchialis DSM 43247]
Length=765
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/240 (34%), Positives = 113/240 (48%), Gaps = 13/240 (5%)
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSA 187
C P +S +S GL V+ + C GGD+ +T+ DG VA+G+FDFS
Sbjct 495 CGSPPKFTPQSFRTSSGGLGVTMKVSATCPGGDILWGPQTRITIKDGNDLVASGNFDFSQ 554
Query 188 DPLRI----EPGVPARRTLVFPPGMYWRTPDMLSGAPA----LAATRKGRSDRSAAR--- 236
P+ + + G L +PPG ++R PD LS + L KG + R
Sbjct 555 TPVAVPSLDDAGTGLTMELTYPPGSFYRLPDTLSTQASTDRFLVDCDKGPTTGQPPRLTV 614
Query 237 --GGSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVG 294
GSA TT A + P + A + L +SD ++ + NRWV Q+SSKR G
Sbjct 615 PDEGSAATTATATGPSLPPGTDLTAASVDALRVQANSDRAFILTNLNNRWVAQLSSKRPG 674
Query 295 LVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEANR 354
L A G+ W + IL + LALR RF RL++S W F+ +WVTV P AN
Sbjct 675 LNAEGRIWDNQAILDEFLALRLRFSDVRLLYSDEWPVFNYRGWWVTVAAATFPGPDAANN 734
>gi|126433404|ref|YP_001069095.1| Pyrrolo-quinoline quinone [Mycobacterium sp. JLS]
gi|126233204|gb|ABN96604.1| Pyrrolo-quinoline quinone [Mycobacterium sp. JLS]
Length=818
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/255 (34%), Positives = 116/255 (46%), Gaps = 29/255 (11%)
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTVADGRRDVAAGSFDFSA 187
C P L + L V + C GGDV S + L VT+ D R + + +FDFS
Sbjct 532 CGRTPELRPVEYRAENGALVVVMEVKARCPGGDVVSTNRLRVTIRDERGLICSATFDFSQ 591
Query 188 DPLRIEP--GVPARRTLVFPPGMYWRTPDML------------------SGAPALAATRK 227
DPL + P A L F G Y R P+ L SG + +
Sbjct 592 DPLVLGPEDSGSALVELTFDSGTYSRHPNTLGDNVGRPSNGEAVTEAGASGNEVVECDDE 651
Query 228 GRSDRSAARGGSARTTMVAAASAAPAYGSI----NAVAGAVLVELRDSDFPYVRVGIANR 283
G + R + G + S+ P G + +A A L D+D PYV+ +A+R
Sbjct 652 GTTGRVESAPGPTANGPQRSVSSDPQGGQVFCGSDADTMAALRAQVDADRPYVQSSLADR 711
Query 284 WVPQVSSKRVGLVA---AGK--TWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFW 338
WV Q+SSK+ GLVA G+ TWT +IL+ HL +R ++ RLVWS W TF +W
Sbjct 712 WVAQLSSKQPGLVAPDVDGRMVTWTPCEILQQHLRMRGQYPEVRLVWSDEWRTFDLRGWW 771
Query 339 VTVVGPAQPTAAEAN 353
VT+ G P A AN
Sbjct 772 VTIAGVTFPDAHAAN 786
>gi|333920517|ref|YP_004494098.1| pyrrolo-quinoline quinone [Amycolicicoccus subflavus DQS3-9A1]
gi|333482738|gb|AEF41298.1| Pyrrolo-quinoline quinone [Amycolicicoccus subflavus DQS3-9A1]
Length=761
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/277 (32%), Positives = 122/277 (45%), Gaps = 44/277 (15%)
Query 110 ARGAATTGVPFAQAEAASCPDDPVL-------EAESIDLTSDG--LAVSAAFMSACAGGD 160
AR GV + ++S PD V+ E +D ++G L V+ +SAC GD
Sbjct 445 ARPPQNAGVGLEERASSSQPDQLVVTRCDQAPEMTPLDFRTNGNELIVTMQVVSACGSGD 504
Query 161 VESNSALEVTVADGRRDVAAGSFDFSADPLRIEP--GVPAR----------RTLVFPPGM 208
+ S AL V+V D VA+G FDFS PL + P G R R FP
Sbjct 505 IVSTDALRVSVFDEGAAVASGMFDFSGAPLYLPPRNGSSGRAGAASDAHVVREFAFPIRS 564
Query 209 YWRTPDMLSGAPALAATRKGRS------DRSAARG-----------GSARTTMVAAASAA 251
+WR P M+ + + ++R D + G G A A A+
Sbjct 565 FWRLPIMVGDSTGVDSSRATFRQSVECLDEGTSHGPVSGEVTTETTGDALKLSAARAAEP 624
Query 252 PAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKT-----WTSAD 306
P S A A L L ++D P+V + +WVPQVSSKR GL A W++ +
Sbjct 625 PGIDSEQAAIDA-LRALANADRPFVAESLEGKWVPQVSSKRYGLDATDIDGTMVHWSAQE 683
Query 307 ILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVG 343
ILR HL LR + RL+++ W F +WVTV G
Sbjct 684 ILRQHLELRILYPEVRLLYTDEWPVFDLKGWWVTVAG 720
>gi|254774873|ref|ZP_05216389.1| hypothetical protein MaviaA2_09400 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=565
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/79 (56%), Positives = 58/79 (74%), Gaps = 0/79 (0%)
Query 265 LVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
L ++ + D +VR +A+RWVPQ+SSKR G+V G W +A LR+HL LRQR+ +L+
Sbjct 446 LHQIANDDRAFVRAQLADRWVPQLSSKRPGVVDNGVVWDNAMTLREHLQLRQRYPNVKLL 505
Query 325 WSGHWTTFSGPDFWVTVVG 343
WSG W+TFSGPDFWVTV G
Sbjct 506 WSGDWSTFSGPDFWVTVAG 524
>gi|336461799|gb|EGO40657.1| serine/threonine protein kinase [Mycobacterium avium subsp. paratuberculosis
S397]
Length=521
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/79 (56%), Positives = 58/79 (74%), Gaps = 0/79 (0%)
Query 265 LVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
L ++ + D +VR +A+RWVPQ+SSKR G+V G W +A LR+HL LRQR+ +L+
Sbjct 402 LHQIANDDRAFVRAQLADRWVPQLSSKRPGVVDNGVVWDNAMTLREHLQLRQRYPNVKLL 461
Query 325 WSGHWTTFSGPDFWVTVVG 343
WSG W+TFSGPDFWVTV G
Sbjct 462 WSGDWSTFSGPDFWVTVAG 480
>gi|41408124|ref|NP_960960.1| hypothetical protein MAP2026 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396479|gb|AAS04343.1| hypothetical protein MAP_2026 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=514
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/79 (56%), Positives = 58/79 (74%), Gaps = 0/79 (0%)
Query 265 LVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
L ++ + D +VR +A+RWVPQ+SSKR G+V G W +A LR+HL LRQR+ +L+
Sbjct 395 LHQIANDDRAFVRAQLADRWVPQLSSKRPGVVDNGVVWDNAMTLREHLQLRQRYPNVKLL 454
Query 325 WSGHWTTFSGPDFWVTVVG 343
WSG W+TFSGPDFWVTV G
Sbjct 455 WSGDWSTFSGPDFWVTVAG 473
>gi|254820584|ref|ZP_05225585.1| hypothetical protein MintA_11686 [Mycobacterium intracellulare
ATCC 13950]
Length=521
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/90 (52%), Positives = 58/90 (65%), Gaps = 5/90 (5%)
Query 265 LVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
L ++ + D YV +A+ WVPQ+SSKR G+ G W +A LR+HL LRQ + RL+
Sbjct 402 LRQIANDDRAYVSTQLADHWVPQLSSKRPGVFDNGAVWDNAMTLREHLQLRQSYPNVRLL 461
Query 325 WSGHWTTFSGPDFWVTVVG-----PAQPTA 349
WSG W+TFSGPDFWVTV G PA P A
Sbjct 462 WSGDWSTFSGPDFWVTVAGITFADPAGPLA 491
>gi|118472741|ref|YP_885582.1| serine/threonine protein kinase [Mycobacterium smegmatis str.
MC2 155]
gi|118174028|gb|ABK74924.1| serine/threonine-protein kinase PknD [Mycobacterium smegmatis
str. MC2 155]
Length=624
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/79 (54%), Positives = 56/79 (71%), Gaps = 0/79 (0%)
Query 265 LVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
L L ++D PYV +A++WVPQ+SSKR GLVA G TW +A IL H+ +R + RL+
Sbjct 505 LRALANNDRPYVAAILADQWVPQISSKRAGLVADGVTWDNARILDQHMRMRATYPDVRLL 564
Query 325 WSGHWTTFSGPDFWVTVVG 343
WSG W+T+ G DFWVT+VG
Sbjct 565 WSGDWSTYDGRDFWVTIVG 583
>gi|260906638|ref|ZP_05914960.1| hypothetical protein BlinB_15007 [Brevibacterium linens BL2]
Length=189
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/79 (52%), Positives = 55/79 (70%), Gaps = 0/79 (0%)
Query 265 LVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
L +L +SD P V+ + +WVPQ+SSK++GL A GKTW DIL +H LR+ F +LV
Sbjct 69 LDQLIESDRPSVKADLIGKWVPQLSSKKLGLKAEGKTWKEKDILAEHQELREEFPRVQLV 128
Query 325 WSGHWTTFSGPDFWVTVVG 343
WSG +++F DFWVTVVG
Sbjct 129 WSGDFSSFKEDDFWVTVVG 147
>gi|325067867|ref|ZP_08126540.1| pyrrolo-quinoline quinone beta-propeller repeat-containing protein
[Actinomyces oris K20]
Length=752
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/239 (30%), Positives = 114/239 (48%), Gaps = 14/239 (5%)
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTV---------ADGRRDV 178
C P S++ L V ++CA GD + ++ +V V D V
Sbjct 484 CSSMPTFTITSVEDGQGELKVQGNMATSCAEGDFLAGASNQVLVYSSTSPTGGEDVDHLV 543
Query 179 AAGSFDFSADPLRIEPGVPARRTLVFPPGMYWRT-PDM-LSGAPALAATRKGRSDRSAAR 236
A+G+FD S DPL I G A TL F Y+RT D+ L G + +G + A+
Sbjct 544 ASGTFDLSGDPLIIPNGGRAV-TLRFGEQHYFRTAKDLDLKGLSVRPSFDRGSPSSATAK 602
Query 237 GGSARTTMVAAASAAPAYGSIN--AVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVG 294
+ +A+++++ A AG + D+P V+ + ++W PQ+SSK+VG
Sbjct 603 SSTNSPMTIASSTSSNANQEAQDEQAAGEAIQWQVKHDYPLVKERLLHQWTPQLSSKQVG 662
Query 295 LVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEAN 353
LVA G+TWT+ IL ++L +RQ A ++ + W + +WVT+ G A +AN
Sbjct 663 LVADGQTWTNRSILAEYLRIRQDNPNAVIIDTSQWPVYDVNGWWVTLQGERFGEADQAN 721
>gi|126433399|ref|YP_001069090.1| protein kinase [Mycobacterium sp. JLS]
gi|126233199|gb|ABN96599.1| protein kinase [Mycobacterium sp. JLS]
Length=621
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/77 (49%), Positives = 51/77 (67%), Gaps = 0/77 (0%)
Query 271 SDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWT 330
+D YV + + W+PQ+S+KRVGL A G W + IL +HLA+R + ARL+WSG W
Sbjct 507 NDHAYVSRYLTDMWLPQLSAKRVGLEAEGVVWDNEQILEEHLAIRDEYPDARLLWSGDWK 566
Query 331 TFSGPDFWVTVVGPAQP 347
TF G +FW+T+VG P
Sbjct 567 TFDGRNFWITIVGLTSP 583
>gi|108797772|ref|YP_637969.1| serine/threonine protein kinase [Mycobacterium sp. MCS]
gi|119866863|ref|YP_936815.1| protein kinase [Mycobacterium sp. KMS]
gi|108768191|gb|ABG06913.1| serine/threonine protein kinase [Mycobacterium sp. MCS]
gi|119692952|gb|ABL90025.1| protein kinase [Mycobacterium sp. KMS]
Length=623
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/77 (49%), Positives = 51/77 (67%), Gaps = 0/77 (0%)
Query 271 SDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWT 330
+D YV + + W+PQ+S+KRVGL A G W + IL +HLA+R + ARL+WSG W
Sbjct 509 NDHAYVSRYLTDMWLPQLSAKRVGLEAEGVVWDNEQILEEHLAIRDEYPDARLLWSGDWK 568
Query 331 TFSGPDFWVTVVGPAQP 347
TF G +FW+T+VG P
Sbjct 569 TFDGRNFWITIVGLTSP 585
>gi|343521709|ref|ZP_08758675.1| hypothetical protein HMPREF9058_1438 [Actinomyces sp. oral taxon
175 str. F0384]
gi|343401118|gb|EGV13624.1| hypothetical protein HMPREF9058_1438 [Actinomyces sp. oral taxon
175 str. F0384]
Length=867
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/239 (32%), Positives = 111/239 (47%), Gaps = 14/239 (5%)
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTV---------ADGRRDV 178
C P S++ L V ++CA GD + S+ +V V AD V
Sbjct 599 CSSMPTFTITSVEDGQGELKVHGNMATSCAEGDFLAGSSSQVLVYSSTSPTGGADVDHLV 658
Query 179 AAGSFDFSADPLRIEPGVPARRTLVFPPGMYWRT-PDM-LSGAPALAATRKGRSDRSAAR 236
A+G+FD S+DPL I G A TL F Y+RT D+ L G + +G S + A+
Sbjct 659 ASGTFDLSSDPLIIPNGGRAV-TLRFGEQHYFRTAKDLDLKGLTVRPSFDRGSSSTATAK 717
Query 237 G--GSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVG 294
SA T +A+S A AG + D+P V + +W PQ+SSK+VG
Sbjct 718 SSTNSAMTIASSASSNANQEAQDEQAAGDAIQWQIKHDYPIVMNSLRGKWTPQLSSKQVG 777
Query 295 LVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEAN 353
LVA G+TWT IL ++L +Q A ++ + W + +WVT+ G +AN
Sbjct 778 LVADGQTWTKRSILAEYLKTQQTNPKAVIIDTSQWPVYDTGGWWVTLQGDTYSDGDQAN 836
>gi|326773818|ref|ZP_08233100.1| serine/arginine repetitive matrix protein 1 [Actinomyces viscosus
C505]
gi|326635957|gb|EGE36861.1| serine/arginine repetitive matrix protein 1 [Actinomyces viscosus
C505]
Length=878
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/239 (32%), Positives = 111/239 (47%), Gaps = 14/239 (5%)
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTV---------ADGRRDV 178
C P S++ L V ++CA GD + S+ +V V AD V
Sbjct 610 CSSMPTFTITSVEDGQGELKVHGNMATSCAEGDFLAGSSSQVLVYSSTSPTGGADVDHLV 669
Query 179 AAGSFDFSADPLRIEPGVPARRTLVFPPGMYWRT-PDM-LSGAPALAATRKGRSDRSAAR 236
A+G+FD ++DPL I G A TL F Y+RT D+ L G + +G S + A+
Sbjct 670 ASGTFDLASDPLIIPNGGRAV-TLRFGEQHYFRTAKDLDLKGLTVRPSFDRGSSSTATAK 728
Query 237 G--GSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVG 294
SA T +A+S A AG + D+P V + +W PQ+SSK+VG
Sbjct 729 SSTNSAMTIASSASSNANQEAQDEQAAGDAIQWQIKHDYPIVMNSLRGKWTPQLSSKQVG 788
Query 295 LVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWVTVVGPAQPTAAEAN 353
LVA G+TWT IL ++L +Q A ++ + W + +WVT+ G +AN
Sbjct 789 LVADGQTWTKRAILAEYLKTQQANPKAVIIDTSQWPVYDTGGWWVTLQGDTYSDGDQAN 847
>gi|329946099|ref|ZP_08293735.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328527881|gb|EGF54869.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
F0386]
Length=851
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/268 (32%), Positives = 120/268 (45%), Gaps = 23/268 (8%)
Query 104 REEPSSARGAAT---TGVPFAQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGD 160
+++P A AAT + +P EA C P L S+ L V A ++CA GD
Sbjct 558 KQDPGQANAAATVTASALPSGAVEA--CSSMPALTITSVQDGQGELTVQANVTTSCADGD 615
Query 161 VESNSALEVTV---------ADGRRDVAAGSFDFSADPLRIEPGVPARRTLV--FPPGMY 209
+ S+ ++ V AD VA+G+FD S++PL I G RT+V F Y
Sbjct 616 FLAGSSNQILVYSSTSPTGGADVDHLVASGTFDLSSEPLIIPNG---GRTVVLRFGEQHY 672
Query 210 WRT-PDMLSGAPALAATRKGRSDRSAARGGSARTTMVAAASAAPAYGSINAVAGAVLVEL 268
+RT D+ + + T S S S + M A S + + G A L
Sbjct 673 FRTAKDLDLKSLKVTPTFDRGSQSSVTSSSSTNSPMTIATSTSSSAGQEQQEEQAAGQAL 732
Query 269 R---DSDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVW 325
R D D V +W PQ+SSK+VGL G+TW++ IL + L RQ +V
Sbjct 733 RWQADHDRSLVMGKFLGKWTPQLSSKQVGLYFDGQTWSNRSILAEFLKTRQANPNTVIVN 792
Query 326 SGHWTTFSGPDFWVTVVGPAQPTAAEAN 353
S W+ F +WVT+ G TA EAN
Sbjct 793 SSDWSVFDVGGWWVTLSGELYATADEAN 820
>gi|227496930|ref|ZP_03927185.1| conserved hypothetical protein [Actinomyces urogenitalis DSM
15434]
gi|226833578|gb|EEH65961.1| conserved hypothetical protein [Actinomyces urogenitalis DSM
15434]
Length=432
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/242 (34%), Positives = 113/242 (47%), Gaps = 16/242 (6%)
Query 124 EAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVESNSALEVTV-------ADGRR 176
+A+ C DP L ++ T+ GL VS +AC GDV S + +T+ G
Sbjct 164 DASQCSQDPDLTVTGVEDTASGLRVSLEVSAACESGDVLSGAQNLLTLYAPSSPSGSGGA 223
Query 177 D--VAAGSFDFSADPLRIEP-GVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRS 233
D VA G DFSA P+ + P G P T F Y+R LS + A RS
Sbjct 224 DSVVALGHVDFSAAPVGVAPQGTPVAVT--FASSQYFRPAAELSPSSMKAVLSLDRSGAQ 281
Query 234 AARGGSARTTMVAAASAAPAYGSINAVAGAVL-VELRDSDFPYVRVGIANRWVPQVSSKR 292
+ S T+ A+A+A A + +A A A+ E +D D RV WVPQ+SSKR
Sbjct 282 STALASQETSFTASATADDAAQADSAAAAALTWQETKDYDTIVSRVN--GMWVPQISSKR 339
Query 293 VGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTF-SGPDFWVTVVGPAQPTAAE 351
GLV G+TW + + +L R + A L+ S W+ F +G +WV +V T
Sbjct 340 PGLVLNGETWDNRMVWEHYLRTRAVYPDALLLNSDSWSVFDAGGHWWVIIVAEPYSTPEG 399
Query 352 AN 353
AN
Sbjct 400 AN 401
>gi|310286810|ref|YP_003938068.1| hypothetical protein BBIF_0289 [Bifidobacterium bifidum S17]
gi|309250746|gb|ADO52494.1| conserved hypothetical membrane protein [Bifidobacterium bifidum
S17]
Length=478
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/290 (27%), Positives = 118/290 (41%), Gaps = 35/290 (12%)
Query 77 VLAATLLVVAVVVTAVGYAV---------TRPARNDREEPSSARGAATTGVPFAQAEAAS 127
++ ++ V VV A G+ V T+ A+ + S G +G A +
Sbjct 172 LIVGIIIAVLVVALAAGFGVWWFMLRDSGTQSAQT--QSTSQQSGKTKSGDSKAAKDDKP 229
Query 128 CPDDPVLEAESIDLTSDGLAVSAAFMSACAG---GDVE--SNSALEVTVADGRRDVAAGS 182
C P E S+D + L S CA GD S ++V++ D +V A +
Sbjct 230 CTAAPDAELSSVDHSDTNLVAQLQLTSNCASTKDGDTAEFKESDVKVSIKDDEGNVIASA 289
Query 183 -FDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALAATRKGRSDRSAARGGSAR 241
FDFS P++ G A L F YWR D + A + G+S A GSA
Sbjct 290 VFDFSKQPVKFN-GETANVALEFTTRQYWRPYDQIETGSAEVILQTGQSGTGEA--GSAD 346
Query 242 TTMVAAASA----APAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVA 297
+A + A Y + A+ +L+ + R + Q+SSK+ + A
Sbjct 347 GDALAGSDIDSEDAERYAQL-----ALSWQLKHDESAASR--FYTTYTTQLSSKKNDMKA 399
Query 298 AGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPD----FWVTVVG 343
GKTW DI L R + A L+WSG + T++ D ++V + G
Sbjct 400 DGKTWHYVDIYEQFLQQRIKHKNAILIWSGDYPTYTKADASTAYYVILSG 449
>gi|311063708|ref|YP_003970433.1| hypothetical protein BBPR_0270 [Bifidobacterium bifidum PRL2010]
gi|310866027|gb|ADP35396.1| Conserved hypothetical protein [Bifidobacterium bifidum PRL2010]
Length=427
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/368 (25%), Positives = 135/368 (37%), Gaps = 79/368 (21%)
Query 42 RFCERCGSPIGVVPWPSEESGTRQ--------------------TAPARSFVPLVV---- 77
RFC++CG+ + P P++ T Q P F P V
Sbjct 44 RFCQQCGAELSAGPQPAQPVPTAQPVPPAQPYQAVQQYAGQYGAAQPGAVFPPQAVQPPA 103
Query 78 ------------------LAATLLVVAVVVTAVGYAV---------TRPARNDREEPSSA 110
+ ++ V VV A G+ V T+ A+ + S
Sbjct 104 QPSRPGESAGKGKKKTALIVGIIIAVLVVALAAGFGVWWFMLRDSGTQSAQT--QSTSQQ 161
Query 111 RGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAG---GDV----ES 163
G +G A + C P E S+D + L S CA GD ES
Sbjct 162 SGKTKSGDSKAAKDDKPCTAAPDAELGSVDHSDANLVAQLQLTSNCASTKDGDTAEFKES 221
Query 164 NSALEVTVADGRRDVAAGSFDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPALA 223
+ + + DG +A+ FDFS P++ G A L F YWR D + A
Sbjct 222 DVKVSIKDDDGNV-IASAVFDFSKQPVKFN-GETANVALEFTTRQYWRPYDQIETGSAEV 279
Query 224 ATRKGRSDRSAARGGSARTTMVAAASA----APAYGSINAVAGAVLVELRDSDFPYVRVG 279
+ G+S A GSA +A + A Y + A+ +L+ + R
Sbjct 280 ILQTGQSGTGEA--GSADGDALAGSDIDSEDAERYAQL-----ALSWQLKHDESAASR-- 330
Query 280 IANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPD--- 336
+ Q+SSK+ + A GKTW DI L R + A L+WSG + T++ D
Sbjct 331 FYTTYTTQLSSKKNDMKADGKTWHYVDIYEQFLQQRIKHKNAILIWSGDYPTYTKADAST 390
Query 337 -FWVTVVG 343
++V + G
Sbjct 391 AYYVILSG 398
>gi|326384036|ref|ZP_08205719.1| pyrrolo-quinoline quinone beta-propeller repeat-containing protein
[Gordonia neofelifaecis NRRL B-59395]
gi|326197196|gb|EGD54387.1| pyrrolo-quinoline quinone beta-propeller repeat-containing protein
[Gordonia neofelifaecis NRRL B-59395]
Length=328
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/77 (43%), Positives = 46/77 (60%), Gaps = 3/77 (3%)
Query 268 LRD---SDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLV 324
LRD +D ++R G+ RW Q+S+KR GL A G+TW + IL + + R R+ RL+
Sbjct 208 LRDQSIADAAFLRAGLDGRWAAQISAKRPGLYAEGRTWDNQAILAEFQSSRSRYPQVRLI 267
Query 325 WSGHWTTFSGPDFWVTV 341
SG W FS +WVTV
Sbjct 268 DSGQWPVFSESGWWVTV 284
>gi|261338595|ref|ZP_05966479.1| conserved hypothetical protein [Bifidobacterium gallicum DSM
20093]
gi|270276634|gb|EFA22488.1| conserved hypothetical protein [Bifidobacterium gallicum DSM
20093]
Length=302
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/296 (28%), Positives = 124/296 (42%), Gaps = 41/296 (13%)
Query 83 LVVAVVVTAVGYAVTRPARNDRE--EPSSA--------RGAATTGVPFAQAEAASCPDDP 132
+ V ++V V + V+R N E S+A GA G + EA SC P
Sbjct 4 VAVILIVIGVVFGVSRANSNASHTVETSTAASPGKSHNNGADDAGKDESDEEAKSCTALP 63
Query 133 VLEAESIDLTSDGLAVSAAFMS-ACAGGDVESNSALEVTVADGRRDV-AAGSFDFSADPL 190
+++ L+ + + + +C E S + VT+ D DV AA +DF+ P+
Sbjct 64 DAILDTVKLSGESMVAKLELAAPSCKDARYEE-SDVRVTLKDDDGDVIAAAVYDFADKPI 122
Query 191 RIEPGVPARRTLVFPPGMYWR-----TPDMLSGAPALAATRKGRS--DRSAARGGSARTT 243
G A +L F YWR D +S A R G + D A GG A +
Sbjct 123 TFASG-EATVSLAFDINQYWRPVGQIDDDDVSVVWQSDAERDGNAAADVDGALGG-ANIS 180
Query 244 MVAAASAAPAYGSINAVAGAVLVELRD-SDFPYVRVGIANRWVPQVSSKRVGLVAAGKTW 302
A A A++ + + D SDF Y + Q+SSKR G+ GK+W
Sbjct 181 NDDCEKYAQA-----ALSTQLTHDKSDASDFYYT-------YTDQLSSKRFGMEIEGKSW 228
Query 303 TSADILRDHLALRQRFGGARLVWSGHWTTFS----GPDFWVTVVGP--AQPTAAEA 352
T DI R L ++ + A L+W+ + ++ D++V + G + AAEA
Sbjct 229 TYTDIYRHFLKMQIKHPKALLIWAADYYNYTKHNHDADYYVILCGESFSDIKAAEA 284
>gi|296140233|ref|YP_003647476.1| serine/threonine protein kinase [Tsukamurella paurometabola DSM
20162]
gi|296028367|gb|ADG79137.1| serine/threonine protein kinase [Tsukamurella paurometabola DSM
20162]
Length=530
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/72 (45%), Positives = 41/72 (57%), Gaps = 1/72 (1%)
Query 271 SDFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWT 330
+D P + + NRWV Q++SK G GKTW ADIL + QRFG R+++S WT
Sbjct 416 TDLPVAKATLNNRWVAQLASKFAGATDDGKTWYEADILGEIGYFDQRFGDVRVLFSPDWT 475
Query 331 TFS-GPDFWVTV 341
FS FWV V
Sbjct 476 VFSTNKIFWVPV 487
>gi|260904560|ref|ZP_05912882.1| protein kinase [Brevibacterium linens BL2]
Length=314
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/63 (43%), Positives = 42/63 (67%), Gaps = 0/63 (0%)
Query 280 IANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWV 339
+ +WV QVS+K VGL A GKTW++ DI+ + R ++ GA L+ SG W ++ ++WV
Sbjct 208 LEGQWVTQVSAKDVGLEADGKTWSAQDIVNEFETNRVKYPGAILIHSGDWDSYKDDNYWV 267
Query 340 TVV 342
TV+
Sbjct 268 TVI 270
>gi|331699109|ref|YP_004335348.1| hypothetical protein Psed_5361 [Pseudonocardia dioxanivorans
CB1190]
gi|326953798|gb|AEA27495.1| hypothetical protein Psed_5361 [Pseudonocardia dioxanivorans
CB1190]
Length=210
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/74 (45%), Positives = 45/74 (61%), Gaps = 0/74 (0%)
Query 280 IANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWV 339
+W+PQ+S+K GLV G+T+ A +L D +A R RF A L+ S +T+F FWV
Sbjct 106 FVGQWIPQISAKAPGLVVDGRTFDDAAVLADVIASRDRFPQALLLRSDDYTSFRRGGFWV 165
Query 340 TVVGPAQPTAAEAN 353
TVVG + PT AN
Sbjct 166 TVVGTSFPTPQAAN 179
>gi|295396536|ref|ZP_06806694.1| serine/threonine-protein kinase PknD [Brevibacterium mcbrellneri
ATCC 49030]
gi|294970617|gb|EFG46534.1| serine/threonine-protein kinase PknD [Brevibacterium mcbrellneri
ATCC 49030]
Length=180
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/69 (34%), Positives = 40/69 (58%), Gaps = 2/69 (2%)
Query 276 VRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGAR--LVWSGHWTTFS 333
V + +WVPQ+SSK+VG+ A G+ W I +H L +G ++ L+ S + ++
Sbjct 69 VDQNLIGKWVPQISSKKVGMEADGQVWDEDTIYEEHQELANEYGASQVLLLKSEDYASYR 128
Query 334 GPDFWVTVV 342
P ++VTV+
Sbjct 129 QPGYYVTVI 137
>gi|225352545|ref|ZP_03743568.1| hypothetical protein BIFPSEUDO_04168 [Bifidobacterium pseudocatenulatum
DSM 20438]
gi|225156739|gb|EEG70133.1| hypothetical protein BIFPSEUDO_04168 [Bifidobacterium pseudocatenulatum
DSM 20438]
Length=335
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/259 (23%), Positives = 106/259 (41%), Gaps = 25/259 (9%)
Query 108 SSARGAATTGVPFAQAEAAS----CPDDPVLEAESIDLTSDGLAVSAAFMSACAGGDVES 163
S+A+ A Q +AA C P ES++ + + AF + G
Sbjct 68 STAQNADEQSNKTKQNDAAKQTKDCATTPDAGLESVEKNGTTMIATVAFSAHACGDTAWK 127
Query 164 NSALEVTVADGRRDVAAGS-FDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLSGAPAL 222
+ +++ D +V A + +DF++DP++ G A L + G YWR D +
Sbjct 128 GEDVTISIKDSSNEVIASAVYDFASDPMQFTSGT-ATLELAYAIGQYWRASDQIETKSTS 186
Query 223 AATRKGRS--DRSAARGGSARTTMVAAASAAPAYGSINAVAGAVLVELRDSDFPYVRVGI 280
+KG + + A G AR A S A Y + A+ +L + R +
Sbjct 187 MVVQKGATPNGNAVASVGDARGGANIADSDAERYAQL-----ALSWQL-----SHDRSAV 236
Query 281 ANRW---VPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFS---- 333
+ + Q+ S++ G+ GKT DI +L R + A L W+ ++ ++
Sbjct 237 SGLYDIPTTQLFSRKYGMEVDGKTQQYRDIYAQYLTSRASWPKAVLAWAADYSYYTRYGH 296
Query 334 GPDFWVTVVGPAQPTAAEA 352
D++V + G + A+A
Sbjct 297 EADYYVLLSGEEFGSVADA 315
>gi|297625864|ref|YP_003687627.1| hypothetical protein PFREUD_06520 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921629|emb|CBL56183.1| Hypothetical protein PFREUD_06520 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length=567
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/86 (38%), Positives = 48/86 (56%), Gaps = 4/86 (4%)
Query 272 DFPYVRVGIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTT 331
D P + +W PQ+S+K G+ GKTW++ DI +Q++ A ++ S W+T
Sbjct 447 DTPLAGAYLVGQWTPQLSAKWDGVSWQGKTWSNQDIANQFRDFKQKYSTAMMLRSADWST 506
Query 332 --FSGPDFWVTVV-GPAQPTAAEANR 354
SG D WVT+V G + AA+ANR
Sbjct 507 LGLSGHD-WVTMVAGISFTNAADANR 531
>gi|289177634|gb|ADC84880.1| Hypothetical protein BIF_00444 [Bifidobacterium animalis subsp.
lactis BB-12]
gi|340365670|gb|AEK30961.1| Non-specific serine/threonine protein kinase [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
Length=307
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (37%), Positives = 43/79 (55%), Gaps = 4/79 (5%)
Query 279 GIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSG---- 334
G+ N + Q+SSK+ GL AAG+TWT IL + L+ ++ A LVW +T +S
Sbjct 209 GLLNVYTTQLSSKKPGLQAAGRTWTYETILGQYRELKAKYPNALLVWGPDYTNYSRSGHP 268
Query 335 PDFWVTVVGPAQPTAAEAN 353
D++V + G TA A
Sbjct 269 SDYYVMLSGETFATAQAAK 287
>gi|330468219|ref|YP_004405962.1| hypothetical protein VAB18032_21310 [Verrucosispora maris AB-18-032]
gi|328811190|gb|AEB45362.1| hypothetical protein VAB18032_21310 [Verrucosispora maris AB-18-032]
Length=296
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/111 (32%), Positives = 52/111 (47%), Gaps = 15/111 (13%)
Query 247 AASAAPAYGSINAVAGAVLVELRDSDFPYVRVGIANRWVPQVSSKRVGLVAAGK------ 300
+ SA P + +A A L + R D P V +A ++V Q++SK VG+V +
Sbjct 149 SESAEPTFDDPEDLALAQLHQFRQQDLP--TVSLAGQYVAQMASKTVGIVDRNQIAANGS 206
Query 301 -TWTSADILRDHLALRQRFGGARLVW------SGHWTTFSGPDFWVTVVGP 344
T+ + DIL +HL LR RF G V G + G W+T+ P
Sbjct 207 HTFYAEDILAEHLDLRNRFDGETQVVLLLSTDYGRQQLYEGEPLWITLALP 257
>gi|345283361|gb|AEN77215.1| hypothetical protein BLC1_1445 [Bifidobacterium animalis subsp.
lactis BLC1]
Length=269
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (37%), Positives = 43/79 (55%), Gaps = 4/79 (5%)
Query 279 GIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSG---- 334
G+ N + Q+SSK+ GL AAG+TWT IL + L+ ++ A LVW +T +S
Sbjct 171 GLLNVYTTQLSSKKPGLQAAGRTWTYETILGQYRELKAKYPNALLVWGPDYTNYSRSGHP 230
Query 335 PDFWVTVVGPAQPTAAEAN 353
D++V + G TA A
Sbjct 231 SDYYVMLSGETFATAQAAK 249
>gi|219683174|ref|YP_002469557.1| hypothetical protein BLA_0688 [Bifidobacterium animalis subsp.
lactis AD011]
gi|219620824|gb|ACL28981.1| possible membrane protein [Bifidobacterium animalis subsp. lactis
AD011]
Length=112
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (37%), Positives = 43/79 (55%), Gaps = 4/79 (5%)
Query 279 GIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSG---- 334
G+ N + Q+SSK+ GL AAG+TWT IL + L+ ++ A LVW +T +S
Sbjct 14 GLLNVYTTQLSSKKPGLQAAGRTWTYETILGQYRELKAKYPNALLVWGPDYTNYSRSGHP 73
Query 335 PDFWVTVVGPAQPTAAEAN 353
D++V + G TA A
Sbjct 74 SDYYVMLSGETFATAQAAK 92
>gi|239620731|ref|ZP_04663762.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|317481686|ref|ZP_07940719.1| hypothetical protein HMPREF0177_00111 [Bifidobacterium sp. 12_1_47BFAA]
gi|239516307|gb|EEQ56174.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|316916865|gb|EFV38254.1| hypothetical protein HMPREF0177_00111 [Bifidobacterium sp. 12_1_47BFAA]
Length=130
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 36/68 (53%), Gaps = 2/68 (2%)
Query 287 QVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFS--GPDFWVTVVGP 344
Q+SSKR G+ A GKTW DIL + + + L+WSG W T+S ++V + G
Sbjct 43 QLSSKRKGMEAEGKTWNYHDILAQFITMHNKKSNVLLIWSGDWPTYSSNSDKYYVILAGE 102
Query 345 AQPTAAEA 352
+ EA
Sbjct 103 GFDSTDEA 110
>gi|183602726|ref|ZP_02964089.1| hypothetical protein BIFLAC_00805 [Bifidobacterium animalis subsp.
lactis HN019]
gi|241191508|ref|YP_002968902.1| hypothetical protein Balac_1494 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196913|ref|YP_002970468.1| hypothetical protein Balat_1494 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183217964|gb|EDT88612.1| hypothetical protein BIFLAC_00805 [Bifidobacterium animalis subsp.
lactis HN019]
gi|240249900|gb|ACS46840.1| hypothetical protein Balac_1494 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251467|gb|ACS48406.1| hypothetical protein Balat_1494 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295794500|gb|ADG34035.1| hypothetical protein BalV_1447 [Bifidobacterium animalis subsp.
lactis V9]
Length=187
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (37%), Positives = 43/79 (55%), Gaps = 4/79 (5%)
Query 279 GIANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSG---- 334
G+ N + Q+SSK+ GL AAG+TWT IL + L+ ++ A LVW +T +S
Sbjct 89 GLLNVYTTQLSSKKPGLQAAGRTWTYETILGQYRELKAKYPNALLVWGPDYTNYSRSGHP 148
Query 335 PDFWVTVVGPAQPTAAEAN 353
D++V + G TA A
Sbjct 149 SDYYVMLSGETFATAQAAK 167
>gi|296454579|ref|YP_003661722.1| hypothetical protein BLJ_1448 [Bifidobacterium longum subsp.
longum JDM301]
gi|296184010|gb|ADH00892.1| hypothetical protein BLJ_1448 [Bifidobacterium longum subsp.
longum JDM301]
Length=285
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/68 (36%), Positives = 35/68 (52%), Gaps = 2/68 (2%)
Query 287 QVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFS--GPDFWVTVVGP 344
Q+SSKR G+ A GKTW DIL + + + L+WSG W +S ++V + G
Sbjct 198 QLSSKRKGMEAEGKTWNYRDILAQFITMHNKNSNVLLIWSGDWPAYSSNSDKYYVILAGE 257
Query 345 AQPTAAEA 352
+ EA
Sbjct 258 GFDSTDEA 265
>gi|46190309|ref|ZP_00121670.2| hypothetical protein Blon03001611 [Bifidobacterium longum DJO10A]
gi|189438901|ref|YP_001953982.1| hypothetical protein BLD_0038 [Bifidobacterium longum DJO10A]
gi|189427336|gb|ACD97484.1| Hypothetical protein BLD_0038 [Bifidobacterium longum DJO10A]
Length=109
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/71 (34%), Positives = 36/71 (51%), Gaps = 2/71 (2%)
Query 284 WVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFS--GPDFWVTV 341
+ Q+SSKR G+ A GKTW DIL + + + L+WSG W +S ++V +
Sbjct 19 YTAQLSSKRKGMEAEGKTWNYRDILAQFITMHNKNSNVLLIWSGDWPAYSSNSDKYYVIL 78
Query 342 VGPAQPTAAEA 352
G + EA
Sbjct 79 AGEGFDSTDEA 89
>gi|23464654|ref|NP_695257.1| hypothetical protein BL0026 [Bifidobacterium longum NCC2705]
gi|23325213|gb|AAN23893.1| hypothetical protein BL0026 [Bifidobacterium longum NCC2705]
Length=106
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (51%), Gaps = 2/75 (2%)
Query 280 IANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFS--GPDF 337
+ + + Q+SSKR G+ A GKTW DIL + + + L+WSG W +S +
Sbjct 12 VYSTYTAQLSSKRKGMEAEGKTWNYRDILAQFITMHNKNSNVLLIWSGDWPAYSSNSDKY 71
Query 338 WVTVVGPAQPTAAEA 352
+V + G + EA
Sbjct 72 YVILAGEGFDSTDEA 86
>gi|295394904|ref|ZP_06805117.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294972237|gb|EFG48099.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
Length=182
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 36/63 (58%), Gaps = 0/63 (0%)
Query 280 IANRWVPQVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWSGHWTTFSGPDFWV 339
+ +WV Q+S+K+ A + W + IL+++ + +G ++ S W++F D+WV
Sbjct 77 LEEKWVVQLSAKQPNDNAGDEEWDYSKILKEYQDNEKTYGTLAMLKSEDWSSFRVKDYWV 136
Query 340 TVV 342
TV+
Sbjct 137 TVI 139
>gi|229817078|ref|ZP_04447360.1| hypothetical protein BIFANG_02333 [Bifidobacterium angulatum
DSM 20098]
gi|229784867|gb|EEP20981.1| hypothetical protein BIFANG_02333 [Bifidobacterium angulatum
DSM 20098]
Length=369
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/261 (22%), Positives = 104/261 (40%), Gaps = 38/261 (14%)
Query 99 PARNDREEPSSARGAATTGVPFAQAEAASCPDDPVLEAESIDLTSDGLAVSAAFMSACAG 158
PARN E S++G T ++ +C P + + L + F +
Sbjct 102 PARN---ETMSSQG--KTAKSKTSEQSKTCTTTPDASLSGVSSSGSTLIATVDFSADACD 156
Query 159 GDVESNSALEVTVADGRRDVAAGS-FDFSADPLRIEPGVPARRTLVFPPGMYWRTPDMLS 217
+ +++++ D +V A + +DF++ P++ + G + + F YWR +
Sbjct 157 SNAWKGKDVKISIKDSDNEVIASAVYDFASKPIQFKNGETTLK-MAFTTNQYWRAVSRIE 215
Query 218 GAPALAATRKGRS-------DRSAARGGS--ARTTMVAAASAAPAYGSINAVAGAVLVEL 268
+KG S D ARGG+ A + M A A ++ N + + L
Sbjct 216 TGSTSMVVQKGASPNGKPATDVDGARGGANIADSDMERYAQLALSWQVSND--KSAISSL 273
Query 269 RDSDFPYVRVGIANRWVP--QVSSKRVGLVAAGKTWTSADILRDHLALRQRFGGARLVWS 326
D VP Q+ S++ G+ GKT DI + +L L ++ A L W+
Sbjct 274 HD--------------VPTTQLFSRKYGMEVDGKTQHYRDIYKQYLELHAKWPNAVLAWA 319
Query 327 GHWTTFS----GPDFWVTVVG 343
+ ++ D++V + G
Sbjct 320 ADYDYYTRYGHEADYYVLLSG 340
Lambda K H
0.317 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 660773121752
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40