BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0623

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607763|ref|NP_215137.1|  hypothetical protein Rv0623 [Mycoba...   160    7e-38
gi|118468950|ref|YP_885673.1|  ribbon-helix-helix transcription f...   137    5e-31
gi|340626748|ref|YP_004745200.1|  hypothetical protein MCAN_17541...   100    8e-20
gi|308231916|ref|ZP_07414265.2|  antitoxin [Mycobacterium tubercu...  98.6    3e-19
gi|15608878|ref|NP_216256.1|  hypothetical protein Rv1740 [Mycoba...  98.6    3e-19
gi|253799218|ref|YP_003032219.1|  antitoxin [Mycobacterium tuberc...  96.3    1e-18
gi|289753831|ref|ZP_06513209.1|  conserved hypothetical protein [...  96.3    1e-18
gi|254231933|ref|ZP_04925260.1|  conserved hypothetical protein [...  92.4    2e-17
gi|220919622|ref|YP_002494925.1|  Rv0623 family protein transcrip...  90.1    1e-16
gi|298529280|ref|ZP_07016683.1|  Rv0623 family protein transcript...  85.9    2e-15
gi|92109699|ref|YP_571985.1|  Rv0623-like transcription factor [N...  85.5    2e-15
gi|90422854|ref|YP_531224.1|  transcription factor [Rhodopseudomo...  84.7    4e-15
gi|15964558|ref|NP_384911.1|  hypothetical protein SMc00899 [Sino...  82.0    3e-14
gi|318040913|ref|ZP_07972869.1|  ribbon-helix-helix transcription...  79.7    1e-13
gi|316934114|ref|YP_004109096.1|  protein transcription factor [R...  79.7    1e-13
gi|153875417|ref|ZP_02003229.1|  Rv0623-like transcription factor...  74.3    5e-12
gi|227819247|ref|YP_002823218.1|  hypothetical protein NGR_b10120...  73.6    9e-12
gi|318040906|ref|ZP_07972862.1|  ribbon-helix-helix transcription...  72.0    3e-11
gi|84495503|ref|ZP_00994622.1|  hypothetical protein JNB_11894 [J...  70.1    1e-10
gi|90425418|ref|YP_533788.1|  transcription factor [Rhodopseudomo...  69.7    1e-10
gi|254430858|ref|ZP_05044561.1|  probable ribbon-helix-helix tran...  69.7    2e-10
gi|91975925|ref|YP_568584.1|  Rv0623-like transcription factor [R...  68.6    3e-10
gi|115526059|ref|YP_782970.1|  transcription factor [Rhodopseudom...  68.2    4e-10
gi|39937201|ref|NP_949477.1|  hypothetical protein RPA4141 [Rhodo...  68.2    4e-10
gi|336116292|ref|YP_004571058.1|  hypothetical protein MLP_06410 ...  67.4    7e-10
gi|192292980|ref|YP_001993585.1|  Rv0623 family protein transcrip...  67.0    1e-09
gi|154243677|ref|YP_001409250.1|  transcription factor [Xanthobac...  63.5    1e-08
gi|270208573|ref|YP_003329344.1|  hypothetical protein pSmeSM11ap...  63.5    1e-08
gi|258650322|ref|YP_003199478.1|  Rv0623 family protein transcrip...  63.2    1e-08
gi|116254472|ref|YP_770308.1|  hypothetical protein pRL100006 [Rh...  62.0    3e-08
gi|334321235|ref|YP_004557775.1|  protein transcription factor [S...  57.4    7e-07
gi|37522793|ref|NP_926170.1|  hypothetical protein gsr3224 [Gloeo...  56.2    2e-06
gi|293980660|ref|YP_003543418.1|  hypothetical protein SJA_P2-001...  55.5    3e-06
gi|254423155|ref|ZP_05036873.1|  hypothetical protein S7335_3309 ...  53.5    1e-05
gi|340776554|ref|ZP_08696497.1|  protein transcription factor [Ac...  52.4    2e-05
gi|83592605|ref|YP_426357.1|  transcription factor [Rhodospirillu...  52.0    3e-05
gi|153007975|ref|YP_001369190.1|  transcription factor [Ochrobact...  50.8    7e-05
gi|339499338|ref|YP_004697373.1|  ribbon-helix-helix transcriptio...  48.5    3e-04
gi|86738963|ref|YP_479363.1|  Rv0623-like transcription factor [F...  48.1    5e-04
gi|299138781|ref|ZP_07031959.1|  Rv0623 family protein transcript...  47.8    6e-04
gi|150398060|ref|YP_001328527.1|  hypothetical protein Smed_2862 ...  47.0    9e-04
gi|15607748|ref|NP_215122.1|  hypothetical protein Rv0608 [Mycoba...  47.0    9e-04
gi|337266993|ref|YP_004611048.1|  protein transcription factor [M...  45.1    0.004
gi|254419903|ref|ZP_05033627.1|  probable ribbon-helix-helix tran...  43.9    0.009
gi|226227510|ref|YP_002761616.1|  hypothetical protein GAU_2104 [...  43.9    0.009
gi|291294622|ref|YP_003506020.1|  Rv0623 family protein transcrip...  42.7    0.018
gi|148241095|ref|YP_001220596.1|  hypothetical protein BBta_p0292...  42.0    0.028
gi|167648432|ref|YP_001686095.1|  transcription factor [Caulobact...  39.7    0.17 
gi|15966131|ref|NP_386484.1|  hypothetical protein SMc02716 [Sino...  39.7    0.17 
gi|296448612|ref|ZP_06890482.1|  Rv0623 family protein transcript...  39.3    0.19 


>gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycobacterium tuberculosis H37Rv]
 gi|15840024|ref|NP_335061.1| hypothetical protein MT0651 [Mycobacterium tuberculosis CDC1551]
 gi|31791805|ref|NP_854298.1| hypothetical protein Mb0639 [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=84

 Score =  160 bits (405),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC
Sbjct  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60

Query  61  AALPVVDNRSAEAILGYDERGLPA  84
           AALPVVDNRSAEAILGYDERGLPA
Sbjct  61  AALPVVDNRSAEAILGYDERGLPA  84


>gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription factor, family protein [Mycobacterium 
smegmatis str. MC2 155]
 gi|118170237|gb|ABK71133.1| probable ribbon-helix-helix transcription factor, family protein 
[Mycobacterium smegmatis str. MC2 155]
Length=84

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 70/84 (84%), Positives = 78/84 (93%), Gaps = 0/84 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIKHPEADRLAR LAARTGETLTEAVV ALRERLAR  GR +VVPLR+ELAAIR RC
Sbjct  1   MALSIKHPEADRLARELAARTGETLTEAVVMALRERLARTVGRTQVVPLREELAAIRRRC  60

Query  61  AALPVVDNRSAEAILGYDERGLPA  84
           AALPV+D+R+AE+ILGYD+RGLP+
Sbjct  61  AALPVLDDRTAESILGYDDRGLPS  84


>gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541 [Mycobacterium canettii CIPT 
140010059]
 gi|340004938|emb|CCC44086.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=70

 Score =  100 bits (248),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 59/68 (87%), Gaps = 0/68 (0%)

Query  17  LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG  76
           LAARTGETLT+AVV A+RE+LAR TGR R + LR+ELAAI  RCAALPV+D R+A+ ILG
Sbjct  3   LAARTGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADKILG  62

Query  77  YDERGLPA  84
           YDERGLPA
Sbjct  63  YDERGLPA  70


>gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tuberculosis SUMu001]
 gi|308370808|ref|ZP_07422802.2| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|308372041|ref|ZP_07427168.2| antitoxin [Mycobacterium tuberculosis SUMu004]
 15 more sequence titles
 Length=72

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 50/68 (74%), Positives = 58/68 (86%), Gaps = 0/68 (0%)

Query  17  LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG  76
           LAAR GETLT+AVV A+RE+LAR TGR R + LR+ELAAI  RCAALPV+D R+A+ ILG
Sbjct  5   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  64

Query  77  YDERGLPA  84
           YDERGLPA
Sbjct  65  YDERGLPA  72


>gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycobacterium tuberculosis H37Rv]
 gi|15841204|ref|NP_336241.1| hypothetical protein MT1782 [Mycobacterium tuberculosis CDC1551]
 gi|31792928|ref|NP_855421.1| hypothetical protein Mb1769 [Mycobacterium bovis AF2122/97]
 45 more sequence titles
 Length=70

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 50/68 (74%), Positives = 58/68 (86%), Gaps = 0/68 (0%)

Query  17  LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG  76
           LAAR GETLT+AVV A+RE+LAR TGR R + LR+ELAAI  RCAALPV+D R+A+ ILG
Sbjct  3   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  62

Query  77  YDERGLPA  84
           YDERGLPA
Sbjct  63  YDERGLPA  70


>gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289554486|ref|ZP_06443696.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297634295|ref|ZP_06952075.1| antitoxin [Mycobacterium tuberculosis KZN 4207]
 gi|297731282|ref|ZP_06960400.1| antitoxin [Mycobacterium tuberculosis KZN R506]
 gi|313658614|ref|ZP_07815494.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
 gi|253320721|gb|ACT25324.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289439118|gb|EFD21611.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328458973|gb|AEB04396.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=70

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 49/68 (73%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  17  LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG  76
           LAAR GETLT+AVV A+RE+LAR TGR R + LR+ELAAI  RC ALPV+D R+A+ ILG
Sbjct  3   LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCEALPVLDTRAADTILG  62

Query  77  YDERGLPA  84
           YDERGLPA
Sbjct  63  YDERGLPA  70


>gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289694418|gb|EFD61847.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=70

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 49/68 (73%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  17  LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG  76
           LAAR GETLT+AVV A+RE+LAR  GR R + LR+ELAAI  RCAALPV+D R+A+ ILG
Sbjct  3   LAARMGETLTQAVVVAVREQLARRAGRTRSISLREELAAIGRRCAALPVLDTRAADTILG  62

Query  77  YDERGLPA  84
           YDERGLPA
Sbjct  63  YDERGLPA  70


>gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254550753|ref|ZP_05141200.1| hypothetical protein Mtube_09889 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|124600992|gb|EAY60002.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=64

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 46/63 (74%), Positives = 54/63 (86%), Gaps = 0/63 (0%)

Query  22  GETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDERG  81
           GETLT+AVV A+RE+LAR TGR R + LR+ELAAI  RCAALPV+D R+A+ ILGYDERG
Sbjct  2   GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDERG  61

Query  82  LPA  84
           LPA
Sbjct  62  LPA  64


>gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcription factor [Methylobacterium 
nodulans ORS 2060]
 gi|219952042|gb|ACL62433.1| Rv0623 family protein transcription factor [Methylobacterium 
nodulans ORS 2060]
Length=84

 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 51/84 (61%), Positives = 58/84 (70%), Gaps = 0/84 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIK PE +RLAR LA RTGET+T A   AL ERL R    AR   L ++LAA R R 
Sbjct  1   MALSIKDPETERLARTLAERTGETITVATRKALEERLRRVGSDARKAALLEDLAACRRRW  60

Query  61  AALPVVDNRSAEAILGYDERGLPA  84
           + LPV+D RSA+ ILGYDE GLP 
Sbjct  61  STLPVLDPRSADEILGYDENGLPG  84


>gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcription factor [Desulfonatronospira 
thiodismutans ASO3-1]
 gi|298510716|gb|EFI34619.1| Rv0623 family protein transcription factor [Desulfonatronospira 
thiodismutans ASO3-1]
Length=83

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 44/81 (55%), Positives = 58/81 (72%), Gaps = 0/81 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSI++PEA+RLAR +AAR+GE +T+A++ +L ERL R   + +     +EL AI  RC
Sbjct  1   MALSIRNPEAERLAREVAARSGENITQAIIHSLEERLQRLGHQQQAAARLEELQAIAGRC  60

Query  61  AALPVVDNRSAEAILGYDERG  81
            ALP +D RS E ILGYDE G
Sbjct  61  QALPDLDQRSEEEILGYDEHG  81


>gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
 gi|91802781|gb|ABE65153.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
Length=84

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 44/83 (54%), Positives = 59/83 (72%), Gaps = 0/83 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIK PE ++LARALA RTGET+T A   A+ ERL R   +AR   L +++ A++ R 
Sbjct  1   MALSIKDPETEKLARALAQRTGETITVATRRAIEERLKRTESQARKAALLEDMEAMQRRL  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
            ALP++D RS + I+GYDE G+P
Sbjct  61  NALPILDPRSPDDIIGYDENGVP  83


>gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomonas palustris BisB18]
 gi|90104868|gb|ABD86905.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB18]
Length=84

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 46/83 (56%), Positives = 56/83 (68%), Gaps = 0/83 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIK PE +RLAR LA  TGE +T A   A+ +RL+R  G +R   L  E+A IR R 
Sbjct  1   MALSIKDPETERLARTLARLTGENITTATKRAIEQRLSRLAGPSRKSALLQEMADIRRRW  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           + LPVVD+R+ E ILGYD  GLP
Sbjct  61  SELPVVDDRTPEEILGYDAHGLP  83


>gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sinorhizobium meliloti 1021]
 gi|334315271|ref|YP_004547890.1| protein transcription factor [Sinorhizobium meliloti AK83]
 gi|15073736|emb|CAC45377.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810692|gb|AEG03361.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
BL225C]
 gi|334094265|gb|AEG52276.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
AK83]
 gi|336031809|gb|AEH77741.1| hypothetical protein SM11_chr0460 [Sinorhizobium meliloti SM11]
Length=84

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 45/84 (54%), Positives = 59/84 (71%), Gaps = 0/84 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIK  E ++LAR LA RTGE++T A   AL ERL R    AR   L ++L AI+ R 
Sbjct  1   MALSIKDTETEQLARTLARRTGESITLATKRALEERLRRTDTAARRAALLEDLEAIQRRW  60

Query  61  AALPVVDNRSAEAILGYDERGLPA  84
            A+PV+D+RS++ I+GYDE GLP+
Sbjct  61  NAMPVLDSRSSDDIIGYDEDGLPS  84


>gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription factor, family protein [Synechococcus 
sp. CB0101]
Length=89

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 45/89 (51%), Positives = 59/89 (67%), Gaps = 5/89 (5%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR-----ETGRARVVPLRDELAA  55
           MAL+I++PEADRLA  +A  +GET T+AV+ AL+ERL R     E G+ R   L   L  
Sbjct  1   MALNIRNPEADRLAAQVACLSGETKTDAVILALKERLQRLQSQPEAGKVRQRSLIHRLDQ  60

Query  56  IRHRCAALPVVDNRSAEAILGYDERGLPA  84
           I  RCAA P++D+ SA+ I GYD  GLP+
Sbjct  61  IALRCAARPILDSSSADEICGYDASGLPS  89


>gi|316934114|ref|YP_004109096.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
 gi|315601828|gb|ADU44363.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris DX-1]
Length=84

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 48/83 (58%), Positives = 61/83 (74%), Gaps = 0/83 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIK PE +RLAR LA  TGET+T+A   AL ERL R  G++R   L +++AAIR R 
Sbjct  1   MALSIKDPETERLARHLAQATGETITQATRRALEERLRRVGGQSRRAELLEDMAAIRQRW  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
            A+PV D+R+A+ I+GYDE GLP
Sbjct  61  RAMPVRDDRTADEIVGYDEHGLP  83


>gi|153875417|ref|ZP_02003229.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
 gi|152068117|gb|EDN66769.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
Length=102

 Score = 74.3 bits (181),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 34/70 (49%), Positives = 48/70 (69%), Gaps = 0/70 (0%)

Query  13  LARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAE  72
           + + L + TGETLT+AV+ ALRER+  E  +   + L+DEL  I   CAALP++DNR+ E
Sbjct  1   MVQELISYTGETLTQAVLNALRERIKTEKRKGAAISLKDELLQIGKECAALPILDNRTPE  60

Query  73  AILGYDERGL  82
            ILGY+  G+
Sbjct  61  EILGYNNNGV  70


>gi|227819247|ref|YP_002823218.1| hypothetical protein NGR_b10120 [Sinorhizobium fredii NGR234]
 gi|227338246|gb|ACP22465.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=84

 Score = 73.6 bits (179),  Expect = 9e-12, Method: Compositional matrix adjust.
 Identities = 49/83 (60%), Positives = 55/83 (67%), Gaps = 0/83 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MALSIK  E +RLA+ALA +TGET+T A   AL ERL R         L +ELAA R R 
Sbjct  1   MALSIKDLETERLAKALAEKTGETITMATRRALEERLRRLANAGNRDVLLEELAASRKRW  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           A LPV DNRSA+ ILGYD  GLP
Sbjct  61  ARLPVADNRSADEILGYDGNGLP  83


>gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription factor, family protein [Synechococcus 
sp. CB0101]
Length=76

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 54/84 (65%), Gaps = 8/84 (9%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MAL+I++PEADRLA  +A   GET ++AV+ AL+ERL R         L   L  I  RC
Sbjct  1   MALNIRNPEADRLAAQVACLAGETKSDAVILALKERLQRS--------LIYRLDQIALRC  52

Query  61  AALPVVDNRSAEAILGYDERGLPA  84
           AA P++D RSA+ I GYD  GLP+
Sbjct  53  AARPILDLRSADEICGYDASGLPS  76


>gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
 gi|84384996|gb|EAQ00876.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
Length=86

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 44/86 (52%), Positives = 56/86 (66%), Gaps = 2/86 (2%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVV-PLRDE-LAAIRH  58
           MAL+IK PE DRLAR LAA TGE++T A   A+ ERL R   + R + P+ D+ +  I  
Sbjct  1   MALNIKDPETDRLARELAAATGESITVAARRAIEERLERIHHQQRAIRPVGDDAIDGIIA  60

Query  59  RCAALPVVDNRSAEAILGYDERGLPA  84
           R  A PV+D R  + ILGYDE GLP+
Sbjct  61  RGRARPVLDARPVDEILGYDENGLPS  86


>gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomonas palustris BisB18]
 gi|90107432|gb|ABD89469.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB18]
Length=83

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 44/83 (54%), Positives = 53/83 (64%), Gaps = 1/83 (1%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M L+IK+ EA RLA  LA  TGE+LT AV  ALRE+L RE  R +     ++L  I  R 
Sbjct  1   MHLNIKNDEAHRLATELAELTGESLTAAVTAALREQLVRERRRRQTDQAAEQLMKIGRRY  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           A+LP    RSA+ ILGYDE GLP
Sbjct  61  ASLP-DSGRSADDILGYDEHGLP  82


>gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix transcription factor, Rv0623 family 
[Cyanobium sp. PCC 7001]
 gi|197625311|gb|EDY37870.1| probable ribbon-helix-helix transcription factor, Rv0623 family 
[Cyanobium sp. PCC 7001]
Length=89

 Score = 69.7 bits (169),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 45/89 (51%), Positives = 56/89 (63%), Gaps = 5/89 (5%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERL-----ARETGRARVVPLRDELAA  55
           MAL+I+HPEA+RLA  LAA +G+T T+AV+ AL+ERL      +E G        + L A
Sbjct  1   MALNIRHPEANRLAAELAALSGQTKTDAVIQALKERLETLKRQQEDGGQARRRRLERLEA  60

Query  56  IRHRCAALPVVDNRSAEAILGYDERGLPA  84
           I  R AA P  D R AE ILGYD  GLP+
Sbjct  61  IALRAAARPQRDPRCAEEILGYDSSGLPS  89


>gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB5]
 gi|91682381|gb|ABE38683.1| Rv0623-like transcription factor [Rhodopseudomonas palustris 
BisB5]
Length=83

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 43/83 (52%), Positives = 53/83 (64%), Gaps = 1/83 (1%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M L+IK+ EA RLA  LA  TGE+LT AV  ALRE+LARE  R +   + + L  I  R 
Sbjct  1   MHLNIKNDEAHRLASELAELTGESLTAAVTAALREQLARERRRRQTDKIAERLLKIGDRY  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           AALP    R+ + +LGYDE GLP
Sbjct  61  AALPDT-GRTPDDVLGYDEHGLP  82


>gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudomonas palustris BisA53]
 gi|115520006|gb|ABJ07990.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris BisA53]
Length=86

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 43/83 (52%), Positives = 53/83 (64%), Gaps = 1/83 (1%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M L+IK+ EA RLA  LA  TGE+LT AV  ALRE+LARE  R +   + + L  I +  
Sbjct  4   MHLNIKNDEAHRLATELAQLTGESLTGAVTAALREQLARERRRRQSDKVAERLMKIGNHY  63

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           A+LP    RS + ILGYDE GLP
Sbjct  64  ASLPDT-GRSPDEILGYDEHGLP  85


>gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodopseudomonas palustris CGA009]
 gi|316935648|ref|YP_004110630.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
 gi|39651059|emb|CAE29582.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|315603362|gb|ADU45897.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris DX-1]
Length=83

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 43/83 (52%), Positives = 52/83 (63%), Gaps = 1/83 (1%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M L+IK+ EA +LA  LA  TGE+LT AV  ALRE+LARE  R +   +   L  I  R 
Sbjct  1   MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           AALP    R+ + ILGYDE GLP
Sbjct  61  AALPDT-GRTPDEILGYDENGLP  82


>gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
 gi|334684070|dbj|BAK33655.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
Length=84

 Score = 67.4 bits (163),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 42/83 (51%), Positives = 51/83 (62%), Gaps = 0/83 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MAL+IK PE DRLAR LAA TGE++T A   A+ ERL R   RA       +L  +  R 
Sbjct  1   MALNIKDPETDRLARELAAATGESITVAARRAIEERLERVRARADAGSASVDLGDLIERA  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
            + P +D RSAE ILGY + GLP
Sbjct  61  RSRPDLDVRSAEEILGYGDDGLP  83


>gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris TIE-1]
 gi|192286729|gb|ACF03110.1| Rv0623 family protein transcription factor [Rhodopseudomonas 
palustris TIE-1]
Length=83

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 42/83 (51%), Positives = 52/83 (63%), Gaps = 1/83 (1%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M L+IK+ EA +LA  LA  TGE+LT AV  ALRE+LARE  R +   +   L  I  R 
Sbjct  1   MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           AA+P    R+ + ILGYDE GLP
Sbjct  61  AAVPDT-GRTPDEILGYDENGLP  82


>gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobacter autotrophicus Py2]
 gi|154162799|gb|ABS70014.1| Rv0623 family protein transcription factor [Xanthobacter autotrophicus 
Py2]
Length=85

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 42/87 (49%), Positives = 54/87 (63%), Gaps = 7/87 (8%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR----ETGRARVVPLRDELAAI  56
           M+L+IK+P    LA  LA R G T T A+  AL ERL R    +T +AR++    EL AI
Sbjct  1   MSLNIKNPATVALADELARRQGVTKTAAIHQALSERLHRMGYGDTAQARLL---GELRAI  57

Query  57  RHRCAALPVVDNRSAEAILGYDERGLP  83
           R R A LP +D RS E I+G+DE G+P
Sbjct  58  RERVARLPELDTRSDEEIVGFDEHGIP  84


>gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap046 [Sinorhizobium meliloti]
 gi|76880847|gb|ABA56017.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=85

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 42/85 (50%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLR--DELAAIRH  58
           M+L+IK+P    LA  LA R G + T A+  AL ERL R  G   V   R   EL AIR 
Sbjct  1   MSLNIKNPATVALADELARRQGISKTAAIHQALSERLHR-MGHGEVSQDRLLGELRAIRQ  59

Query  59  RCAALPVVDNRSAEAILGYDERGLP  83
           R A LP +D+RS E I+GYDE G+P
Sbjct  60  RIARLPELDSRSDEEIIGYDEHGIP  84


>gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcription factor [Nakamurella multipartita 
DSM 44233]
 gi|258553547|gb|ACV76489.1| Rv0623 family protein transcription factor [Nakamurella multipartita 
DSM 44233]
Length=84

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 40/83 (49%), Positives = 47/83 (57%), Gaps = 0/83 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M L+IK PE DRLAR LAA  GE+LT A   A+ ERL+R   R R       L     R 
Sbjct  1   MVLNIKDPETDRLARELAAEAGESLTVATRRAIEERLSRLRARKRANDPDLGLDEFIRRG  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
               V+D RS + I+GYDE GLP
Sbjct  61  RERAVLDERSPDDIIGYDEHGLP  83


>gi|116254472|ref|YP_770308.1| hypothetical protein pRL100006 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|241554095|ref|YP_002979308.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum 
bv. trifolii WSM1325]
 gi|115259120|emb|CAK10231.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 
3841]
 gi|240863401|gb|ACS61063.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum 
bv. trifolii WSM1325]
Length=82

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 45/89 (51%), Positives = 53/89 (60%), Gaps = 14/89 (15%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLA---RETGRARVVPLRDELAAIR  57
           M+LSIK PEA RLA+A++  TGE++T  V  ALRER A   R  GRA V    +EL AI 
Sbjct  1   MSLSIKDPEAHRLAQAISHATGESMTRVVTEALRERFAKIERRKGRASV----EELLAIA  56

Query  58  HRCAAL---PVVDNRSAEAILGYDERGLP  83
            R AA    P VD+    A   YDE GLP
Sbjct  57  DRAAAHVKRPYVDH----AEFLYDENGLP  81


>gi|334321235|ref|YP_004557775.1| protein transcription factor [Sinorhizobium meliloti AK83]
 gi|334100023|gb|AEG58031.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
AK83]
Length=87

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 42/86 (49%), Positives = 51/86 (60%), Gaps = 8/86 (9%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLA---RETGRARVVPLRDELAAIR  57
           ++LSIK PEA RLA+A++  TGE++T  V  ALRERLA   R  GRA V    +EL AI 
Sbjct  6   VSLSIKDPEAHRLAQAISHATGESMTRVVTNALRERLAKIERRKGRASV----EELLAIA  61

Query  58  HRCAALPVVDNRSAEAILGYDERGLP  83
            R AA  V       A   YDE G+P
Sbjct  62  DR-AATHVKHPYDDHADFLYDENGIP  86


>gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeobacter violaceus PCC 7421]
 gi|35213795|dbj|BAC91165.1| gsr3224 [Gloeobacter violaceus PCC 7421]
Length=92

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 35/83 (43%), Positives = 53/83 (64%), Gaps = 3/83 (3%)

Query  3   LSIKHPEADRLARALAARTGETLTEAVVTALRERLA--RETGRARVVPLRDELAAIRHRC  60
           ++IK  +A R+A  L+  TGE++T+A+ TA+ ERL   R   R+R   + + L A+  R 
Sbjct  4   INIKSDKAYRMANELSRLTGESVTQAITTAIEERLEKIRAQTRSRREGIAERLLALGTRS  63

Query  61  AALPVVDNRSAEAILGYDERGLP  83
            ALP++D R+ + IL YDE GLP
Sbjct  64  VALPILDPRAPDEIL-YDENGLP  85


>gi|293980660|ref|YP_003543418.1| hypothetical protein SJA_P2-00160 [Sphingobium japonicum UT26S]
 gi|292677677|dbj|BAI99192.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=82

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 39/89 (44%), Positives = 51/89 (58%), Gaps = 14/89 (15%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLA---RETGRARVVPLRDELAAIR  57
           M+L++K PEA RLA+A+A  TG+++T  V  ALRER A   R+  +A V     EL  I 
Sbjct  1   MSLNVKDPEAHRLAQAIAQATGQSMTRVVTEALRERFARIERQKSKASVA----ELLTIA  56

Query  58  HRCAAL---PVVDNRSAEAILGYDERGLP  83
            R A     P VD+    A L YD+ GLP
Sbjct  57  DRAATHVKRPYVDH----AELFYDDNGLP  81


>gi|254423155|ref|ZP_05036873.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
 gi|196190644|gb|EDX85608.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
Length=63

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 38/62 (62%), Gaps = 3/62 (4%)

Query  25  LTEAVVTALRERLAR---ETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDERG  81
           +TE V TAL++ L R   E   ++  PL + L  I  RCAALP  D RSA+ I GYDE G
Sbjct  1   MTETVKTALQQALFRHKTEQEGSKPRPLAERLNEIALRCAALPDCDKRSADDIFGYDEDG  60

Query  82  LP  83
           LP
Sbjct  61  LP  62


>gi|340776554|ref|ZP_08696497.1| protein transcription factor [Acetobacter aceti NBRC 14818]
Length=84

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 44/83 (54%), Positives = 51/83 (62%), Gaps = 0/83 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M L+IK+ EA RLA  LA  TGE LT AV TALRERL RE  R     + + L  I  R 
Sbjct  1   MHLNIKNDEAHRLAAELARLTGENLTSAVTTALRERLDRERRRHARNDVAERLMTIGRRY  60

Query  61  AALPVVDNRSAEAILGYDERGLP  83
           AALP   +   +AILGYDE G+P
Sbjct  61  AALPDGASTDPDAILGYDENGVP  83


>gi|83592605|ref|YP_426357.1| transcription factor [Rhodospirillum rubrum ATCC 11170]
 gi|83575519|gb|ABC22070.1| Rv0623-like transcription factor [Rhodospirillum rubrum ATCC 
11170]
Length=82

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 50/86 (59%), Gaps = 8/86 (9%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           M+L+IK PEA RLA+A+A  TG+++   V  ALRER A    R     + +EL AI  R 
Sbjct  1   MSLTIKDPEAHRLAQAIARATGKSMARVVTEALRERYAEIEHRQAKASV-EELLAIADRA  59

Query  61  AAL---PVVDNRSAEAILGYDERGLP  83
           AA    P VD+    A L YDE GLP
Sbjct  60  AAQGNRPRVDH----ADLLYDEHGLP  81


>gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobactrum anthropi ATCC 49188]
 gi|151559863|gb|ABS13361.1| Rv0623 family protein transcription factor [Ochrobactrum anthropi 
ATCC 49188]
Length=90

 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 36/82 (44%), Positives = 46/82 (57%), Gaps = 11/82 (13%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERL-----ARETGRARVVPLRDELAA  55
           MALSIK  EADRLAR L+  TGET+T+A+  A+RERL      RE  R  V  ++   A 
Sbjct  1   MALSIKTDEADRLARELSRLTGETMTDAITQAMRERLDRLRAEREAQRDYVARMK---AF  57

Query  56  IRHRCAAL---PVVDNRSAEAI  74
           +R R +     PV      EA+
Sbjct  58  VRERASRYDRRPVTKQEWDEAV  79


>gi|339499338|ref|YP_004697373.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta 
caldaria DSM 7334]
 gi|338833687|gb|AEJ18865.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta 
caldaria DSM 7334]
Length=85

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 49/84 (59%), Gaps = 10/84 (11%)

Query  3   LSIKHPEADRLARALAARTGETLTEAVVTALRERL----ARETGRARVVPLRDELAAIRH  58
           +SI++ E +RLAR LA   G+++TE ++ AL +RL    A E  R +V+     L  I  
Sbjct  2   ISIRNAEVERLARELATAEGKSMTETILEAL-QRLKTEAAGEGERKKVI-----LKEIAR  55

Query  59  RCAALPVVDNRSAEAILGYDERGL  82
            CA  P +D R  E ILGYD+ G+
Sbjct  56  TCALAPDLDLRQPEKILGYDDIGV  79


>gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [Frankia sp. CcI3]
 gi|86565825|gb|ABD09634.1| Rv0623-like transcription factor [Frankia sp. CcI3]
Length=89

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 41/90 (46%), Positives = 50/90 (56%), Gaps = 17/90 (18%)

Query  3   LSIKHPEADRLARALAARTGETLTEAVVTALRERLAR--------ETGRARVVPLRDELA  54
           L+IK+ EA RL+R LA  TGET+T AV+ A+RERL R        E   AR+V L     
Sbjct  9   LNIKNEEAQRLSRELAELTGETVTTAVLVAVRERLERMRADRDEGEQRAARIVALG----  64

Query  55  AIRHRCAALPVVDNRSAEAILGYDERGLPA  84
             R   AA+P     S E +  YDE GLPA
Sbjct  65  --RQTAAAVP-PPGLSIEDL--YDEHGLPA  89


>gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcription factor [Acidobacterium sp. 
MP5ACTX8]
 gi|298599417|gb|EFI55577.1| Rv0623 family protein transcription factor [Acidobacterium sp. 
MP5ACTX8]
Length=91

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 29/84 (35%), Positives = 46/84 (55%), Gaps = 2/84 (2%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARET--GRARVVPLRDELAAIRH  58
           MAL I +P  ++  R+LA+ TGE++TEA+  A  ERL R    G+    P  +E+ A+  
Sbjct  6   MALHITNPAVEQKVRSLASVTGESITEAIGAAAEERLIRFNAAGKNLSSPSVEEVLAMIR  65

Query  59  RCAALPVVDNRSAEAILGYDERGL  82
                P+ ++ + + ILGY   G 
Sbjct  66  SFNLKPINEDLTDDEILGYGPEGF  89


>gi|150398060|ref|YP_001328527.1| hypothetical protein Smed_2862 [Sinorhizobium medicae WSM419]
 gi|150029575|gb|ABR61692.1| hypothetical protein Smed_2862 [Sinorhizobium medicae WSM419]
Length=88

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 24/39 (62%), Positives = 30/39 (77%), Gaps = 0/39 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR  39
           M LS+K  EADRLAR L+  TGET+T+A+  A+RERL R
Sbjct  43  MGLSLKTEEADRLARELSRLTGETMTDAMTKAMRERLER  81


>gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycobacterium tuberculosis H37Rv]
 gi|15840008|ref|NP_335045.1| hypothetical protein MT0637 [Mycobacterium tuberculosis CDC1551]
 gi|31791790|ref|NP_854283.1| hypothetical protein Mb0624 [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=81

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 47/86 (55%), Gaps = 7/86 (8%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC  60
           MAL+IK P   +  + +A  TGE+   AV TA+ ERLA    R R   L   L AI H+ 
Sbjct  1   MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT  56

Query  61  AA--LPVVDNRSAEAILGYDERGLPA  84
           A+   P       +A+L YDERGLPA
Sbjct  57  ASRMSPEAKRLDHDALL-YDERGLPA  81


>gi|337266993|ref|YP_004611048.1| protein transcription factor [Mesorhizobium opportunistum WSM2075]
 gi|336027303|gb|AEH86954.1| Rv0623 family protein transcription factor [Mesorhizobium opportunistum 
WSM2075]
Length=88

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 38/91 (42%), Positives = 51/91 (57%), Gaps = 11/91 (12%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVP------LRDELA  54
           MALSIK+ E ++LAR LA R   ++TEA+    R+ L RE  R R+VP      L   L 
Sbjct  1   MALSIKNMEVEQLARELARRRRVSVTEAI----RQSLEREVARERLVPREETSDLYQRLL  56

Query  55  AIRHRCAALPVVDN-RSAEAILGYDERGLPA  84
           AI      +P  +N  + + ILGYDE G+P 
Sbjct  57  AISESAGKIPKRENAMTDDEILGYDEFGIPT  87


>gi|254419903|ref|ZP_05033627.1| probable ribbon-helix-helix transcription factor, Rv0623 family 
[Brevundimonas sp. BAL3]
 gi|196186080|gb|EDX81056.1| probable ribbon-helix-helix transcription factor, Rv0623 family 
[Brevundimonas sp. BAL3]
Length=86

 Score = 43.9 bits (102),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 37/88 (43%), Positives = 45/88 (52%), Gaps = 8/88 (9%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTAL---RERLARETGRARVVPLRDELAAIR  57
           M LSIK  E +R ARA+A R G +LTEA+  AL    + L  E G A     R+ L A  
Sbjct  1   MGLSIKRAETERKARAVAERLGVSLTEAIDIALDKTWKELTAEEGAAERASKREALFAY-  59

Query  58  HRCAALPVVDNRSAEAILG--YDERGLP  83
                LP  D RS + +    YDE GLP
Sbjct  60  --LRTLPPGDGRSLQEVDDEMYDEHGLP  85


>gi|226227510|ref|YP_002761616.1| hypothetical protein GAU_2104 [Gemmatimonas aurantiaca T-27]
 gi|226090701|dbj|BAH39146.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length=86

 Score = 43.9 bits (102),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 33/91 (37%), Positives = 52/91 (58%), Gaps = 16/91 (17%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERL---------ARETGRARVVPLRD  51
           MA++IK PEA++L R LA  TGE++T+A+  A+RERL         A E   +RV     
Sbjct  1   MAINIKSPEAEKLVRELAELTGESITDAIQHAVRERLTRERLRKLGAVERSWSRV-----  55

Query  52  ELAAIRHRCAALPVVDNRSAEAILGYDERGL  82
               I+ R A      + + E+++GYD++G+
Sbjct  56  --QRIQERIAGGAAASDVTTESVIGYDDQGV  84


>gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcription factor [Meiothermus ruber 
DSM 1279]
 gi|290469581|gb|ADD27000.1| Rv0623 family protein transcription factor [Meiothermus ruber 
DSM 1279]
Length=88

 Score = 42.7 bits (99),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 23/39 (59%), Positives = 29/39 (75%), Gaps = 0/39 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR  39
           MAL++K+PE +RLA  +A  TGET TEA+  AL ER AR
Sbjct  1   MALTVKNPEVERLAEEVARLTGETKTEAIRKALLERKAR  39


>gi|148241095|ref|YP_001220596.1| hypothetical protein BBta_p0292 [Bradyrhizobium sp. BTAi1]
 gi|146411471|gb|ABQ39924.1| hypothetical protein BBta_p0292 [Bradyrhizobium sp. BTAi1]
Length=81

 Score = 42.0 bits (97),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 25/49 (52%), Positives = 29/49 (60%), Gaps = 0/49 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPL  49
           MA  IK+PE D LAR +AA     LTEAV  AL   L RE G+  +V L
Sbjct  1   MAFHIKNPETDALARKVAALKKIGLTEAVHAALAHELEREQGKPSLVDL  49


>gi|167648432|ref|YP_001686095.1| transcription factor [Caulobacter sp. K31]
 gi|167350862|gb|ABZ73597.1| Rv0623 family protein transcription factor [Caulobacter sp. K31]
Length=115

 Score = 39.7 bits (91),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 20/37 (55%), Positives = 27/37 (73%), Gaps = 0/37 (0%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERL  37
           M + IK+PEA+R  R LA  TGE+LT A+  A++ERL
Sbjct  24  MGILIKNPEAERAVRELADLTGESLTTAIEIAVKERL  60


>gi|15966131|ref|NP_386484.1| hypothetical protein SMc02716 [Sinorhizobium meliloti 1021]
 gi|334317136|ref|YP_004549755.1| protein transcription factor [Sinorhizobium meliloti AK83]
 gi|7388541|sp|Q9X7L3.1|Y2378_RHIME RecName: Full=Uncharacterized protein R02378
 gi|4539551|emb|CAB39978.1| hypothetical protein [Sinorhizobium meliloti]
 gi|15075401|emb|CAC46957.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333812440|gb|AEG05109.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
BL225C]
 gi|334096130|gb|AEG54141.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti 
AK83]
 gi|336032147|gb|AEH78079.1| conserved hypothetical protein [Sinorhizobium meliloti SM11]
Length=83

 Score = 39.7 bits (91),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 27/61 (45%), Positives = 35/61 (58%), Gaps = 4/61 (6%)

Query  1   MALSIKHPEADRLARALAARTG-ETLTEAVVTALRERLARETGRARVVPLRDELAAIRHR  59
           MAL IK P  DR+A  L  R G  T T+AV  AL+  L R       +PLR++LAA+R +
Sbjct  1   MALYIKDPTVDRMAEKLQERLGVRTKTDAVRIALQHELDRVEDE---IPLREKLAALRQQ  57

Query  60  C  60
            
Sbjct  58  A  58


>gi|296448612|ref|ZP_06890482.1| Rv0623 family protein transcription factor [Methylosinus trichosporium 
OB3b]
 gi|296253884|gb|EFH01041.1| Rv0623 family protein transcription factor [Methylosinus trichosporium 
OB3b]
Length=81

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 29/59 (50%), Positives = 33/59 (56%), Gaps = 4/59 (6%)

Query  1   MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRA----RVVPLRDELAA  55
           M+L I+  E DRLA  LAA T  T TEAV  ALR  L R         R  PLR+E+AA
Sbjct  1   MSLDIRDDEVDRLAAQLAALTRSTKTEAVRDALRRELTRVRSEQPLWLRSEPLRNEIAA  59



Lambda     K      H
   0.320    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131923386480




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40