BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0623
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycoba... 160 7e-38
gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription f... 137 5e-31
gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541... 100 8e-20
gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tubercu... 98.6 3e-19
gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycoba... 98.6 3e-19
gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberc... 96.3 1e-18
gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [... 96.3 1e-18
gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [... 92.4 2e-17
gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcrip... 90.1 1e-16
gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcript... 85.9 2e-15
gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [N... 85.5 2e-15
gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomo... 84.7 4e-15
gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sino... 82.0 3e-14
gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription... 79.7 1e-13
gi|316934114|ref|YP_004109096.1| protein transcription factor [R... 79.7 1e-13
gi|153875417|ref|ZP_02003229.1| Rv0623-like transcription factor... 74.3 5e-12
gi|227819247|ref|YP_002823218.1| hypothetical protein NGR_b10120... 73.6 9e-12
gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription... 72.0 3e-11
gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [J... 70.1 1e-10
gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomo... 69.7 1e-10
gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix tran... 69.7 2e-10
gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [R... 68.6 3e-10
gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudom... 68.2 4e-10
gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodo... 68.2 4e-10
gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 ... 67.4 7e-10
gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcrip... 67.0 1e-09
gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobac... 63.5 1e-08
gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap... 63.5 1e-08
gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcrip... 63.2 1e-08
gi|116254472|ref|YP_770308.1| hypothetical protein pRL100006 [Rh... 62.0 3e-08
gi|334321235|ref|YP_004557775.1| protein transcription factor [S... 57.4 7e-07
gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeo... 56.2 2e-06
gi|293980660|ref|YP_003543418.1| hypothetical protein SJA_P2-001... 55.5 3e-06
gi|254423155|ref|ZP_05036873.1| hypothetical protein S7335_3309 ... 53.5 1e-05
gi|340776554|ref|ZP_08696497.1| protein transcription factor [Ac... 52.4 2e-05
gi|83592605|ref|YP_426357.1| transcription factor [Rhodospirillu... 52.0 3e-05
gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobact... 50.8 7e-05
gi|339499338|ref|YP_004697373.1| ribbon-helix-helix transcriptio... 48.5 3e-04
gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [F... 48.1 5e-04
gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcript... 47.8 6e-04
gi|150398060|ref|YP_001328527.1| hypothetical protein Smed_2862 ... 47.0 9e-04
gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycoba... 47.0 9e-04
gi|337266993|ref|YP_004611048.1| protein transcription factor [M... 45.1 0.004
gi|254419903|ref|ZP_05033627.1| probable ribbon-helix-helix tran... 43.9 0.009
gi|226227510|ref|YP_002761616.1| hypothetical protein GAU_2104 [... 43.9 0.009
gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcrip... 42.7 0.018
gi|148241095|ref|YP_001220596.1| hypothetical protein BBta_p0292... 42.0 0.028
gi|167648432|ref|YP_001686095.1| transcription factor [Caulobact... 39.7 0.17
gi|15966131|ref|NP_386484.1| hypothetical protein SMc02716 [Sino... 39.7 0.17
gi|296448612|ref|ZP_06890482.1| Rv0623 family protein transcript... 39.3 0.19
>gi|15607763|ref|NP_215137.1| hypothetical protein Rv0623 [Mycobacterium tuberculosis H37Rv]
gi|15840024|ref|NP_335061.1| hypothetical protein MT0651 [Mycobacterium tuberculosis CDC1551]
gi|31791805|ref|NP_854298.1| hypothetical protein Mb0639 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=84
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC
Sbjct 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
Query 61 AALPVVDNRSAEAILGYDERGLPA 84
AALPVVDNRSAEAILGYDERGLPA
Sbjct 61 AALPVVDNRSAEAILGYDERGLPA 84
>gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription factor, family protein [Mycobacterium
smegmatis str. MC2 155]
gi|118170237|gb|ABK71133.1| probable ribbon-helix-helix transcription factor, family protein
[Mycobacterium smegmatis str. MC2 155]
Length=84
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/84 (84%), Positives = 78/84 (93%), Gaps = 0/84 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIKHPEADRLAR LAARTGETLTEAVV ALRERLAR GR +VVPLR+ELAAIR RC
Sbjct 1 MALSIKHPEADRLARELAARTGETLTEAVVMALRERLARTVGRTQVVPLREELAAIRRRC 60
Query 61 AALPVVDNRSAEAILGYDERGLPA 84
AALPV+D+R+AE+ILGYD+RGLP+
Sbjct 61 AALPVLDDRTAESILGYDDRGLPS 84
>gi|340626748|ref|YP_004745200.1| hypothetical protein MCAN_17541 [Mycobacterium canettii CIPT
140010059]
gi|340004938|emb|CCC44086.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=70
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 59/68 (87%), Gaps = 0/68 (0%)
Query 17 LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG 76
LAARTGETLT+AVV A+RE+LAR TGR R + LR+ELAAI RCAALPV+D R+A+ ILG
Sbjct 3 LAARTGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADKILG 62
Query 77 YDERGLPA 84
YDERGLPA
Sbjct 63 YDERGLPA 70
>gi|308231916|ref|ZP_07414265.2| antitoxin [Mycobacterium tuberculosis SUMu001]
gi|308370808|ref|ZP_07422802.2| antitoxin [Mycobacterium tuberculosis SUMu003]
gi|308372041|ref|ZP_07427168.2| antitoxin [Mycobacterium tuberculosis SUMu004]
15 more sequence titles
Length=72
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/68 (74%), Positives = 58/68 (86%), Gaps = 0/68 (0%)
Query 17 LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG 76
LAAR GETLT+AVV A+RE+LAR TGR R + LR+ELAAI RCAALPV+D R+A+ ILG
Sbjct 5 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 64
Query 77 YDERGLPA 84
YDERGLPA
Sbjct 65 YDERGLPA 72
>gi|15608878|ref|NP_216256.1| hypothetical protein Rv1740 [Mycobacterium tuberculosis H37Rv]
gi|15841204|ref|NP_336241.1| hypothetical protein MT1782 [Mycobacterium tuberculosis CDC1551]
gi|31792928|ref|NP_855421.1| hypothetical protein Mb1769 [Mycobacterium bovis AF2122/97]
45 more sequence titles
Length=70
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/68 (74%), Positives = 58/68 (86%), Gaps = 0/68 (0%)
Query 17 LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG 76
LAAR GETLT+AVV A+RE+LAR TGR R + LR+ELAAI RCAALPV+D R+A+ ILG
Sbjct 3 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 62
Query 77 YDERGLPA 84
YDERGLPA
Sbjct 63 YDERGLPA 70
>gi|253799218|ref|YP_003032219.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|289554486|ref|ZP_06443696.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|297634295|ref|ZP_06952075.1| antitoxin [Mycobacterium tuberculosis KZN 4207]
gi|297731282|ref|ZP_06960400.1| antitoxin [Mycobacterium tuberculosis KZN R506]
gi|313658614|ref|ZP_07815494.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
gi|253320721|gb|ACT25324.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|289439118|gb|EFD21611.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328458973|gb|AEB04396.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=70
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/68 (73%), Positives = 57/68 (84%), Gaps = 0/68 (0%)
Query 17 LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG 76
LAAR GETLT+AVV A+RE+LAR TGR R + LR+ELAAI RC ALPV+D R+A+ ILG
Sbjct 3 LAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCEALPVLDTRAADTILG 62
Query 77 YDERGLPA 84
YDERGLPA
Sbjct 63 YDERGLPA 70
>gi|289753831|ref|ZP_06513209.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289694418|gb|EFD61847.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=70
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/68 (73%), Positives = 57/68 (84%), Gaps = 0/68 (0%)
Query 17 LAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILG 76
LAAR GETLT+AVV A+RE+LAR GR R + LR+ELAAI RCAALPV+D R+A+ ILG
Sbjct 3 LAARMGETLTQAVVVAVREQLARRAGRTRSISLREELAAIGRRCAALPVLDTRAADTILG 62
Query 77 YDERGLPA 84
YDERGLPA
Sbjct 63 YDERGLPA 70
>gi|254231933|ref|ZP_04925260.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254550753|ref|ZP_05141200.1| hypothetical protein Mtube_09889 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|124600992|gb|EAY60002.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=64
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/63 (74%), Positives = 54/63 (86%), Gaps = 0/63 (0%)
Query 22 GETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDERG 81
GETLT+AVV A+RE+LAR TGR R + LR+ELAAI RCAALPV+D R+A+ ILGYDERG
Sbjct 2 GETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDERG 61
Query 82 LPA 84
LPA
Sbjct 62 LPA 64
>gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcription factor [Methylobacterium
nodulans ORS 2060]
gi|219952042|gb|ACL62433.1| Rv0623 family protein transcription factor [Methylobacterium
nodulans ORS 2060]
Length=84
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/84 (61%), Positives = 58/84 (70%), Gaps = 0/84 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIK PE +RLAR LA RTGET+T A AL ERL R AR L ++LAA R R
Sbjct 1 MALSIKDPETERLARTLAERTGETITVATRKALEERLRRVGSDARKAALLEDLAACRRRW 60
Query 61 AALPVVDNRSAEAILGYDERGLPA 84
+ LPV+D RSA+ ILGYDE GLP
Sbjct 61 STLPVLDPRSADEILGYDENGLPG 84
>gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcription factor [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510716|gb|EFI34619.1| Rv0623 family protein transcription factor [Desulfonatronospira
thiodismutans ASO3-1]
Length=83
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/81 (55%), Positives = 58/81 (72%), Gaps = 0/81 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSI++PEA+RLAR +AAR+GE +T+A++ +L ERL R + + +EL AI RC
Sbjct 1 MALSIRNPEAERLAREVAARSGENITQAIIHSLEERLQRLGHQQQAAARLEELQAIAGRC 60
Query 61 AALPVVDNRSAEAILGYDERG 81
ALP +D RS E ILGYDE G
Sbjct 61 QALPDLDQRSEEEILGYDEHG 81
>gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
gi|91802781|gb|ABE65153.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14]
Length=84
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/83 (54%), Positives = 59/83 (72%), Gaps = 0/83 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIK PE ++LARALA RTGET+T A A+ ERL R +AR L +++ A++ R
Sbjct 1 MALSIKDPETEKLARALAQRTGETITVATRRAIEERLKRTESQARKAALLEDMEAMQRRL 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
ALP++D RS + I+GYDE G+P
Sbjct 61 NALPILDPRSPDDIIGYDENGVP 83
>gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomonas palustris BisB18]
gi|90104868|gb|ABD86905.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB18]
Length=84
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/83 (56%), Positives = 56/83 (68%), Gaps = 0/83 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIK PE +RLAR LA TGE +T A A+ +RL+R G +R L E+A IR R
Sbjct 1 MALSIKDPETERLARTLARLTGENITTATKRAIEQRLSRLAGPSRKSALLQEMADIRRRW 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
+ LPVVD+R+ E ILGYD GLP
Sbjct 61 SELPVVDDRTPEEILGYDAHGLP 83
>gi|15964558|ref|NP_384911.1| hypothetical protein SMc00899 [Sinorhizobium meliloti 1021]
gi|334315271|ref|YP_004547890.1| protein transcription factor [Sinorhizobium meliloti AK83]
gi|15073736|emb|CAC45377.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810692|gb|AEG03361.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
BL225C]
gi|334094265|gb|AEG52276.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
AK83]
gi|336031809|gb|AEH77741.1| hypothetical protein SM11_chr0460 [Sinorhizobium meliloti SM11]
Length=84
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/84 (54%), Positives = 59/84 (71%), Gaps = 0/84 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIK E ++LAR LA RTGE++T A AL ERL R AR L ++L AI+ R
Sbjct 1 MALSIKDTETEQLARTLARRTGESITLATKRALEERLRRTDTAARRAALLEDLEAIQRRW 60
Query 61 AALPVVDNRSAEAILGYDERGLPA 84
A+PV+D+RS++ I+GYDE GLP+
Sbjct 61 NAMPVLDSRSSDDIIGYDEDGLPS 84
>gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription factor, family protein [Synechococcus
sp. CB0101]
Length=89
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/89 (51%), Positives = 59/89 (67%), Gaps = 5/89 (5%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR-----ETGRARVVPLRDELAA 55
MAL+I++PEADRLA +A +GET T+AV+ AL+ERL R E G+ R L L
Sbjct 1 MALNIRNPEADRLAAQVACLSGETKTDAVILALKERLQRLQSQPEAGKVRQRSLIHRLDQ 60
Query 56 IRHRCAALPVVDNRSAEAILGYDERGLPA 84
I RCAA P++D+ SA+ I GYD GLP+
Sbjct 61 IALRCAARPILDSSSADEICGYDASGLPS 89
>gi|316934114|ref|YP_004109096.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
gi|315601828|gb|ADU44363.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris DX-1]
Length=84
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/83 (58%), Positives = 61/83 (74%), Gaps = 0/83 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIK PE +RLAR LA TGET+T+A AL ERL R G++R L +++AAIR R
Sbjct 1 MALSIKDPETERLARHLAQATGETITQATRRALEERLRRVGGQSRRAELLEDMAAIRQRW 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
A+PV D+R+A+ I+GYDE GLP
Sbjct 61 RAMPVRDDRTADEIVGYDEHGLP 83
>gi|153875417|ref|ZP_02003229.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
gi|152068117|gb|EDN66769.1| Rv0623-like transcription factor [Beggiatoa sp. PS]
Length=102
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/70 (49%), Positives = 48/70 (69%), Gaps = 0/70 (0%)
Query 13 LARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAE 72
+ + L + TGETLT+AV+ ALRER+ E + + L+DEL I CAALP++DNR+ E
Sbjct 1 MVQELISYTGETLTQAVLNALRERIKTEKRKGAAISLKDELLQIGKECAALPILDNRTPE 60
Query 73 AILGYDERGL 82
ILGY+ G+
Sbjct 61 EILGYNNNGV 70
>gi|227819247|ref|YP_002823218.1| hypothetical protein NGR_b10120 [Sinorhizobium fredii NGR234]
gi|227338246|gb|ACP22465.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=84
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/83 (60%), Positives = 55/83 (67%), Gaps = 0/83 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MALSIK E +RLA+ALA +TGET+T A AL ERL R L +ELAA R R
Sbjct 1 MALSIKDLETERLAKALAEKTGETITMATRRALEERLRRLANAGNRDVLLEELAASRKRW 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
A LPV DNRSA+ ILGYD GLP
Sbjct 61 ARLPVADNRSADEILGYDGNGLP 83
>gi|318040906|ref|ZP_07972862.1| ribbon-helix-helix transcription factor, family protein [Synechococcus
sp. CB0101]
Length=76
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (65%), Gaps = 8/84 (9%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MAL+I++PEADRLA +A GET ++AV+ AL+ERL R L L I RC
Sbjct 1 MALNIRNPEADRLAAQVACLAGETKSDAVILALKERLQRS--------LIYRLDQIALRC 52
Query 61 AALPVVDNRSAEAILGYDERGLPA 84
AA P++D RSA+ I GYD GLP+
Sbjct 53 AARPILDLRSADEICGYDASGLPS 76
>gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
gi|84384996|gb|EAQ00876.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649]
Length=86
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/86 (52%), Positives = 56/86 (66%), Gaps = 2/86 (2%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVV-PLRDE-LAAIRH 58
MAL+IK PE DRLAR LAA TGE++T A A+ ERL R + R + P+ D+ + I
Sbjct 1 MALNIKDPETDRLARELAAATGESITVAARRAIEERLERIHHQQRAIRPVGDDAIDGIIA 60
Query 59 RCAALPVVDNRSAEAILGYDERGLPA 84
R A PV+D R + ILGYDE GLP+
Sbjct 61 RGRARPVLDARPVDEILGYDENGLPS 86
>gi|90425418|ref|YP_533788.1| transcription factor [Rhodopseudomonas palustris BisB18]
gi|90107432|gb|ABD89469.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB18]
Length=83
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/83 (54%), Positives = 53/83 (64%), Gaps = 1/83 (1%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M L+IK+ EA RLA LA TGE+LT AV ALRE+L RE R + ++L I R
Sbjct 1 MHLNIKNDEAHRLATELAELTGESLTAAVTAALREQLVRERRRRQTDQAAEQLMKIGRRY 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
A+LP RSA+ ILGYDE GLP
Sbjct 61 ASLP-DSGRSADDILGYDEHGLP 82
>gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix transcription factor, Rv0623 family
[Cyanobium sp. PCC 7001]
gi|197625311|gb|EDY37870.1| probable ribbon-helix-helix transcription factor, Rv0623 family
[Cyanobium sp. PCC 7001]
Length=89
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/89 (51%), Positives = 56/89 (63%), Gaps = 5/89 (5%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERL-----ARETGRARVVPLRDELAA 55
MAL+I+HPEA+RLA LAA +G+T T+AV+ AL+ERL +E G + L A
Sbjct 1 MALNIRHPEANRLAAELAALSGQTKTDAVIQALKERLETLKRQQEDGGQARRRRLERLEA 60
Query 56 IRHRCAALPVVDNRSAEAILGYDERGLPA 84
I R AA P D R AE ILGYD GLP+
Sbjct 61 IALRAAARPQRDPRCAEEILGYDSSGLPS 89
>gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB5]
gi|91682381|gb|ABE38683.1| Rv0623-like transcription factor [Rhodopseudomonas palustris
BisB5]
Length=83
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/83 (52%), Positives = 53/83 (64%), Gaps = 1/83 (1%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M L+IK+ EA RLA LA TGE+LT AV ALRE+LARE R + + + L I R
Sbjct 1 MHLNIKNDEAHRLASELAELTGESLTAAVTAALREQLARERRRRQTDKIAERLLKIGDRY 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
AALP R+ + +LGYDE GLP
Sbjct 61 AALPDT-GRTPDDVLGYDEHGLP 82
>gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudomonas palustris BisA53]
gi|115520006|gb|ABJ07990.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris BisA53]
Length=86
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/83 (52%), Positives = 53/83 (64%), Gaps = 1/83 (1%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M L+IK+ EA RLA LA TGE+LT AV ALRE+LARE R + + + L I +
Sbjct 4 MHLNIKNDEAHRLATELAQLTGESLTGAVTAALREQLARERRRRQSDKVAERLMKIGNHY 63
Query 61 AALPVVDNRSAEAILGYDERGLP 83
A+LP RS + ILGYDE GLP
Sbjct 64 ASLPDT-GRSPDEILGYDEHGLP 85
>gi|39937201|ref|NP_949477.1| hypothetical protein RPA4141 [Rhodopseudomonas palustris CGA009]
gi|316935648|ref|YP_004110630.1| protein transcription factor [Rhodopseudomonas palustris DX-1]
gi|39651059|emb|CAE29582.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|315603362|gb|ADU45897.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris DX-1]
Length=83
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/83 (52%), Positives = 52/83 (63%), Gaps = 1/83 (1%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M L+IK+ EA +LA LA TGE+LT AV ALRE+LARE R + + L I R
Sbjct 1 MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
AALP R+ + ILGYDE GLP
Sbjct 61 AALPDT-GRTPDEILGYDENGLP 82
>gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
gi|334684070|dbj|BAK33655.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1]
Length=84
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/83 (51%), Positives = 51/83 (62%), Gaps = 0/83 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MAL+IK PE DRLAR LAA TGE++T A A+ ERL R RA +L + R
Sbjct 1 MALNIKDPETDRLARELAAATGESITVAARRAIEERLERVRARADAGSASVDLGDLIERA 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
+ P +D RSAE ILGY + GLP
Sbjct 61 RSRPDLDVRSAEEILGYGDDGLP 83
>gi|192292980|ref|YP_001993585.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris TIE-1]
gi|192286729|gb|ACF03110.1| Rv0623 family protein transcription factor [Rhodopseudomonas
palustris TIE-1]
Length=83
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/83 (51%), Positives = 52/83 (63%), Gaps = 1/83 (1%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M L+IK+ EA +LA LA TGE+LT AV ALRE+LARE R + + L I R
Sbjct 1 MHLNIKNDEAHQLATELARMTGESLTAAVTNALREQLAREHRRRQTDQIAQRLLKIGGRY 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
AA+P R+ + ILGYDE GLP
Sbjct 61 AAVPDT-GRTPDEILGYDENGLP 82
>gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobacter autotrophicus Py2]
gi|154162799|gb|ABS70014.1| Rv0623 family protein transcription factor [Xanthobacter autotrophicus
Py2]
Length=85
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/87 (49%), Positives = 54/87 (63%), Gaps = 7/87 (8%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR----ETGRARVVPLRDELAAI 56
M+L+IK+P LA LA R G T T A+ AL ERL R +T +AR++ EL AI
Sbjct 1 MSLNIKNPATVALADELARRQGVTKTAAIHQALSERLHRMGYGDTAQARLL---GELRAI 57
Query 57 RHRCAALPVVDNRSAEAILGYDERGLP 83
R R A LP +D RS E I+G+DE G+P
Sbjct 58 RERVARLPELDTRSDEEIVGFDEHGIP 84
>gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap046 [Sinorhizobium meliloti]
gi|76880847|gb|ABA56017.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=85
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/85 (50%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLR--DELAAIRH 58
M+L+IK+P LA LA R G + T A+ AL ERL R G V R EL AIR
Sbjct 1 MSLNIKNPATVALADELARRQGISKTAAIHQALSERLHR-MGHGEVSQDRLLGELRAIRQ 59
Query 59 RCAALPVVDNRSAEAILGYDERGLP 83
R A LP +D+RS E I+GYDE G+P
Sbjct 60 RIARLPELDSRSDEEIIGYDEHGIP 84
>gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcription factor [Nakamurella multipartita
DSM 44233]
gi|258553547|gb|ACV76489.1| Rv0623 family protein transcription factor [Nakamurella multipartita
DSM 44233]
Length=84
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/83 (49%), Positives = 47/83 (57%), Gaps = 0/83 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M L+IK PE DRLAR LAA GE+LT A A+ ERL+R R R L R
Sbjct 1 MVLNIKDPETDRLARELAAEAGESLTVATRRAIEERLSRLRARKRANDPDLGLDEFIRRG 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
V+D RS + I+GYDE GLP
Sbjct 61 RERAVLDERSPDDIIGYDEHGLP 83
>gi|116254472|ref|YP_770308.1| hypothetical protein pRL100006 [Rhizobium leguminosarum bv. viciae
3841]
gi|241554095|ref|YP_002979308.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115259120|emb|CAK10231.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
gi|240863401|gb|ACS61063.1| Rv0623 family protein transcription factor [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length=82
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/89 (51%), Positives = 53/89 (60%), Gaps = 14/89 (15%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLA---RETGRARVVPLRDELAAIR 57
M+LSIK PEA RLA+A++ TGE++T V ALRER A R GRA V +EL AI
Sbjct 1 MSLSIKDPEAHRLAQAISHATGESMTRVVTEALRERFAKIERRKGRASV----EELLAIA 56
Query 58 HRCAAL---PVVDNRSAEAILGYDERGLP 83
R AA P VD+ A YDE GLP
Sbjct 57 DRAAAHVKRPYVDH----AEFLYDENGLP 81
>gi|334321235|ref|YP_004557775.1| protein transcription factor [Sinorhizobium meliloti AK83]
gi|334100023|gb|AEG58031.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
AK83]
Length=87
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/86 (49%), Positives = 51/86 (60%), Gaps = 8/86 (9%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLA---RETGRARVVPLRDELAAIR 57
++LSIK PEA RLA+A++ TGE++T V ALRERLA R GRA V +EL AI
Sbjct 6 VSLSIKDPEAHRLAQAISHATGESMTRVVTNALRERLAKIERRKGRASV----EELLAIA 61
Query 58 HRCAALPVVDNRSAEAILGYDERGLP 83
R AA V A YDE G+P
Sbjct 62 DR-AATHVKHPYDDHADFLYDENGIP 86
>gi|37522793|ref|NP_926170.1| hypothetical protein gsr3224 [Gloeobacter violaceus PCC 7421]
gi|35213795|dbj|BAC91165.1| gsr3224 [Gloeobacter violaceus PCC 7421]
Length=92
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/83 (43%), Positives = 53/83 (64%), Gaps = 3/83 (3%)
Query 3 LSIKHPEADRLARALAARTGETLTEAVVTALRERLA--RETGRARVVPLRDELAAIRHRC 60
++IK +A R+A L+ TGE++T+A+ TA+ ERL R R+R + + L A+ R
Sbjct 4 INIKSDKAYRMANELSRLTGESVTQAITTAIEERLEKIRAQTRSRREGIAERLLALGTRS 63
Query 61 AALPVVDNRSAEAILGYDERGLP 83
ALP++D R+ + IL YDE GLP
Sbjct 64 VALPILDPRAPDEIL-YDENGLP 85
>gi|293980660|ref|YP_003543418.1| hypothetical protein SJA_P2-00160 [Sphingobium japonicum UT26S]
gi|292677677|dbj|BAI99192.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=82
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/89 (44%), Positives = 51/89 (58%), Gaps = 14/89 (15%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLA---RETGRARVVPLRDELAAIR 57
M+L++K PEA RLA+A+A TG+++T V ALRER A R+ +A V EL I
Sbjct 1 MSLNVKDPEAHRLAQAIAQATGQSMTRVVTEALRERFARIERQKSKASVA----ELLTIA 56
Query 58 HRCAAL---PVVDNRSAEAILGYDERGLP 83
R A P VD+ A L YD+ GLP
Sbjct 57 DRAATHVKRPYVDH----AELFYDDNGLP 81
>gi|254423155|ref|ZP_05036873.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
gi|196190644|gb|EDX85608.1| hypothetical protein S7335_3309 [Synechococcus sp. PCC 7335]
Length=63
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (62%), Gaps = 3/62 (4%)
Query 25 LTEAVVTALRERLAR---ETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDERG 81
+TE V TAL++ L R E ++ PL + L I RCAALP D RSA+ I GYDE G
Sbjct 1 MTETVKTALQQALFRHKTEQEGSKPRPLAERLNEIALRCAALPDCDKRSADDIFGYDEDG 60
Query 82 LP 83
LP
Sbjct 61 LP 62
>gi|340776554|ref|ZP_08696497.1| protein transcription factor [Acetobacter aceti NBRC 14818]
Length=84
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/83 (54%), Positives = 51/83 (62%), Gaps = 0/83 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M L+IK+ EA RLA LA TGE LT AV TALRERL RE R + + L I R
Sbjct 1 MHLNIKNDEAHRLAAELARLTGENLTSAVTTALRERLDRERRRHARNDVAERLMTIGRRY 60
Query 61 AALPVVDNRSAEAILGYDERGLP 83
AALP + +AILGYDE G+P
Sbjct 61 AALPDGASTDPDAILGYDENGVP 83
>gi|83592605|ref|YP_426357.1| transcription factor [Rhodospirillum rubrum ATCC 11170]
gi|83575519|gb|ABC22070.1| Rv0623-like transcription factor [Rhodospirillum rubrum ATCC
11170]
Length=82
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/86 (47%), Positives = 50/86 (59%), Gaps = 8/86 (9%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
M+L+IK PEA RLA+A+A TG+++ V ALRER A R + +EL AI R
Sbjct 1 MSLTIKDPEAHRLAQAIARATGKSMARVVTEALRERYAEIEHRQAKASV-EELLAIADRA 59
Query 61 AAL---PVVDNRSAEAILGYDERGLP 83
AA P VD+ A L YDE GLP
Sbjct 60 AAQGNRPRVDH----ADLLYDEHGLP 81
>gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobactrum anthropi ATCC 49188]
gi|151559863|gb|ABS13361.1| Rv0623 family protein transcription factor [Ochrobactrum anthropi
ATCC 49188]
Length=90
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/82 (44%), Positives = 46/82 (57%), Gaps = 11/82 (13%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERL-----ARETGRARVVPLRDELAA 55
MALSIK EADRLAR L+ TGET+T+A+ A+RERL RE R V ++ A
Sbjct 1 MALSIKTDEADRLARELSRLTGETMTDAITQAMRERLDRLRAEREAQRDYVARMK---AF 57
Query 56 IRHRCAAL---PVVDNRSAEAI 74
+R R + PV EA+
Sbjct 58 VRERASRYDRRPVTKQEWDEAV 79
>gi|339499338|ref|YP_004697373.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta
caldaria DSM 7334]
gi|338833687|gb|AEJ18865.1| ribbon-helix-helix transcription factor, family protein [Spirochaeta
caldaria DSM 7334]
Length=85
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/84 (41%), Positives = 49/84 (59%), Gaps = 10/84 (11%)
Query 3 LSIKHPEADRLARALAARTGETLTEAVVTALRERL----ARETGRARVVPLRDELAAIRH 58
+SI++ E +RLAR LA G+++TE ++ AL +RL A E R +V+ L I
Sbjct 2 ISIRNAEVERLARELATAEGKSMTETILEAL-QRLKTEAAGEGERKKVI-----LKEIAR 55
Query 59 RCAALPVVDNRSAEAILGYDERGL 82
CA P +D R E ILGYD+ G+
Sbjct 56 TCALAPDLDLRQPEKILGYDDIGV 79
>gi|86738963|ref|YP_479363.1| Rv0623-like transcription factor [Frankia sp. CcI3]
gi|86565825|gb|ABD09634.1| Rv0623-like transcription factor [Frankia sp. CcI3]
Length=89
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/90 (46%), Positives = 50/90 (56%), Gaps = 17/90 (18%)
Query 3 LSIKHPEADRLARALAARTGETLTEAVVTALRERLAR--------ETGRARVVPLRDELA 54
L+IK+ EA RL+R LA TGET+T AV+ A+RERL R E AR+V L
Sbjct 9 LNIKNEEAQRLSRELAELTGETVTTAVLVAVRERLERMRADRDEGEQRAARIVALG---- 64
Query 55 AIRHRCAALPVVDNRSAEAILGYDERGLPA 84
R AA+P S E + YDE GLPA
Sbjct 65 --RQTAAAVP-PPGLSIEDL--YDEHGLPA 89
>gi|299138781|ref|ZP_07031959.1| Rv0623 family protein transcription factor [Acidobacterium sp.
MP5ACTX8]
gi|298599417|gb|EFI55577.1| Rv0623 family protein transcription factor [Acidobacterium sp.
MP5ACTX8]
Length=91
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (35%), Positives = 46/84 (55%), Gaps = 2/84 (2%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARET--GRARVVPLRDELAAIRH 58
MAL I +P ++ R+LA+ TGE++TEA+ A ERL R G+ P +E+ A+
Sbjct 6 MALHITNPAVEQKVRSLASVTGESITEAIGAAAEERLIRFNAAGKNLSSPSVEEVLAMIR 65
Query 59 RCAALPVVDNRSAEAILGYDERGL 82
P+ ++ + + ILGY G
Sbjct 66 SFNLKPINEDLTDDEILGYGPEGF 89
>gi|150398060|ref|YP_001328527.1| hypothetical protein Smed_2862 [Sinorhizobium medicae WSM419]
gi|150029575|gb|ABR61692.1| hypothetical protein Smed_2862 [Sinorhizobium medicae WSM419]
Length=88
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/39 (62%), Positives = 30/39 (77%), Gaps = 0/39 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR 39
M LS+K EADRLAR L+ TGET+T+A+ A+RERL R
Sbjct 43 MGLSLKTEEADRLARELSRLTGETMTDAMTKAMRERLER 81
>gi|15607748|ref|NP_215122.1| hypothetical protein Rv0608 [Mycobacterium tuberculosis H37Rv]
gi|15840008|ref|NP_335045.1| hypothetical protein MT0637 [Mycobacterium tuberculosis CDC1551]
gi|31791790|ref|NP_854283.1| hypothetical protein Mb0624 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=81
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/86 (44%), Positives = 47/86 (55%), Gaps = 7/86 (8%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRC 60
MAL+IK P + + +A TGE+ AV TA+ ERLA R R L L AI H+
Sbjct 1 MALNIKDPSVHQAVKQIAKITGESQARAVATAVNERLA----RLRSDDLAARLLAIGHKT 56
Query 61 AA--LPVVDNRSAEAILGYDERGLPA 84
A+ P +A+L YDERGLPA
Sbjct 57 ASRMSPEAKRLDHDALL-YDERGLPA 81
>gi|337266993|ref|YP_004611048.1| protein transcription factor [Mesorhizobium opportunistum WSM2075]
gi|336027303|gb|AEH86954.1| Rv0623 family protein transcription factor [Mesorhizobium opportunistum
WSM2075]
Length=88
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/91 (42%), Positives = 51/91 (57%), Gaps = 11/91 (12%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVP------LRDELA 54
MALSIK+ E ++LAR LA R ++TEA+ R+ L RE R R+VP L L
Sbjct 1 MALSIKNMEVEQLARELARRRRVSVTEAI----RQSLEREVARERLVPREETSDLYQRLL 56
Query 55 AIRHRCAALPVVDN-RSAEAILGYDERGLPA 84
AI +P +N + + ILGYDE G+P
Sbjct 57 AISESAGKIPKRENAMTDDEILGYDEFGIPT 87
>gi|254419903|ref|ZP_05033627.1| probable ribbon-helix-helix transcription factor, Rv0623 family
[Brevundimonas sp. BAL3]
gi|196186080|gb|EDX81056.1| probable ribbon-helix-helix transcription factor, Rv0623 family
[Brevundimonas sp. BAL3]
Length=86
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/88 (43%), Positives = 45/88 (52%), Gaps = 8/88 (9%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTAL---RERLARETGRARVVPLRDELAAIR 57
M LSIK E +R ARA+A R G +LTEA+ AL + L E G A R+ L A
Sbjct 1 MGLSIKRAETERKARAVAERLGVSLTEAIDIALDKTWKELTAEEGAAERASKREALFAY- 59
Query 58 HRCAALPVVDNRSAEAILG--YDERGLP 83
LP D RS + + YDE GLP
Sbjct 60 --LRTLPPGDGRSLQEVDDEMYDEHGLP 85
>gi|226227510|ref|YP_002761616.1| hypothetical protein GAU_2104 [Gemmatimonas aurantiaca T-27]
gi|226090701|dbj|BAH39146.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length=86
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/91 (37%), Positives = 52/91 (58%), Gaps = 16/91 (17%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERL---------ARETGRARVVPLRD 51
MA++IK PEA++L R LA TGE++T+A+ A+RERL A E +RV
Sbjct 1 MAINIKSPEAEKLVRELAELTGESITDAIQHAVRERLTRERLRKLGAVERSWSRV----- 55
Query 52 ELAAIRHRCAALPVVDNRSAEAILGYDERGL 82
I+ R A + + E+++GYD++G+
Sbjct 56 --QRIQERIAGGAAASDVTTESVIGYDDQGV 84
>gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcription factor [Meiothermus ruber
DSM 1279]
gi|290469581|gb|ADD27000.1| Rv0623 family protein transcription factor [Meiothermus ruber
DSM 1279]
Length=88
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/39 (59%), Positives = 29/39 (75%), Gaps = 0/39 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLAR 39
MAL++K+PE +RLA +A TGET TEA+ AL ER AR
Sbjct 1 MALTVKNPEVERLAEEVARLTGETKTEAIRKALLERKAR 39
>gi|148241095|ref|YP_001220596.1| hypothetical protein BBta_p0292 [Bradyrhizobium sp. BTAi1]
gi|146411471|gb|ABQ39924.1| hypothetical protein BBta_p0292 [Bradyrhizobium sp. BTAi1]
Length=81
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/49 (52%), Positives = 29/49 (60%), Gaps = 0/49 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPL 49
MA IK+PE D LAR +AA LTEAV AL L RE G+ +V L
Sbjct 1 MAFHIKNPETDALARKVAALKKIGLTEAVHAALAHELEREQGKPSLVDL 49
>gi|167648432|ref|YP_001686095.1| transcription factor [Caulobacter sp. K31]
gi|167350862|gb|ABZ73597.1| Rv0623 family protein transcription factor [Caulobacter sp. K31]
Length=115
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/37 (55%), Positives = 27/37 (73%), Gaps = 0/37 (0%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERL 37
M + IK+PEA+R R LA TGE+LT A+ A++ERL
Sbjct 24 MGILIKNPEAERAVRELADLTGESLTTAIEIAVKERL 60
>gi|15966131|ref|NP_386484.1| hypothetical protein SMc02716 [Sinorhizobium meliloti 1021]
gi|334317136|ref|YP_004549755.1| protein transcription factor [Sinorhizobium meliloti AK83]
gi|7388541|sp|Q9X7L3.1|Y2378_RHIME RecName: Full=Uncharacterized protein R02378
gi|4539551|emb|CAB39978.1| hypothetical protein [Sinorhizobium meliloti]
gi|15075401|emb|CAC46957.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333812440|gb|AEG05109.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
BL225C]
gi|334096130|gb|AEG54141.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti
AK83]
gi|336032147|gb|AEH78079.1| conserved hypothetical protein [Sinorhizobium meliloti SM11]
Length=83
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/61 (45%), Positives = 35/61 (58%), Gaps = 4/61 (6%)
Query 1 MALSIKHPEADRLARALAARTG-ETLTEAVVTALRERLARETGRARVVPLRDELAAIRHR 59
MAL IK P DR+A L R G T T+AV AL+ L R +PLR++LAA+R +
Sbjct 1 MALYIKDPTVDRMAEKLQERLGVRTKTDAVRIALQHELDRVEDE---IPLREKLAALRQQ 57
Query 60 C 60
Sbjct 58 A 58
>gi|296448612|ref|ZP_06890482.1| Rv0623 family protein transcription factor [Methylosinus trichosporium
OB3b]
gi|296253884|gb|EFH01041.1| Rv0623 family protein transcription factor [Methylosinus trichosporium
OB3b]
Length=81
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/59 (50%), Positives = 33/59 (56%), Gaps = 4/59 (6%)
Query 1 MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRA----RVVPLRDELAA 55
M+L I+ E DRLA LAA T T TEAV ALR L R R PLR+E+AA
Sbjct 1 MSLDIRDDEVDRLAAQLAALTRSTKTEAVRDALRRELTRVRSEQPLWLRSEPLRNEIAA 59
Lambda K H
0.320 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131923386480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40