BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0624

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607764|ref|NP_215138.1|  hypothetical protein Rv0624 [Mycoba...   266    6e-70
gi|118472447|ref|YP_885674.1|  PilT domain-containing protein [My...   192    1e-47
gi|92109698|ref|YP_571984.1|  PilT protein-like [Nitrobacter hamb...   167    6e-40
gi|227819246|ref|YP_002823217.1|  hypothetical protein NGR_b10110...   154    6e-36
gi|220919621|ref|YP_002494924.1|  PilT protein domain protein [Me...   153    9e-36
gi|15964557|ref|NP_384910.1|  hypothetical protein SMc00900 [Sino...   149    2e-34
gi|153869463|ref|ZP_01999056.1|  conserved hypothetical protein [...   143    9e-33
gi|316934115|ref|YP_004109097.1|  PilT domain-containing protein ...   140    4e-32
gi|298529281|ref|ZP_07016684.1|  PilT protein domain protein [Des...   136    1e-30
gi|318040914|ref|ZP_07972870.1|  hypothetical protein SCB01_04369...   135    3e-30
gi|153012021|ref|YP_001373233.1|  PilT domain-containing protein ...   134    5e-30
gi|254424570|ref|ZP_05038288.1|  hypothetical protein S7335_4730 ...   130    5e-29
gi|334321234|ref|YP_004557774.1|  PilT protein domain-containing ...   130    7e-29
gi|90422855|ref|YP_531225.1|  PilT protein-like protein [Rhodopse...   130    7e-29
gi|270208572|ref|YP_003329343.1|  hypothetical protein pSmeSM11ap...   130    8e-29
gi|318040907|ref|ZP_07972863.1|  hypothetical protein SCB01_04334...   130    9e-29
gi|116254471|ref|YP_770307.1|  hypothetical protein pRL100005 [Rh...   127    6e-28
gi|293980661|ref|YP_003543419.1|  hypothetical protein SJA_P2-001...   126    1e-27
gi|241554096|ref|YP_002979309.1|  PilT protein domain protein [Rh...   124    5e-27
gi|87123252|ref|ZP_01079103.1|  hypothetical protein RS9917_05315...   123    8e-27
gi|339499339|ref|YP_004697374.1|  PilT protein domain-containing ...   117    5e-25
gi|154243676|ref|YP_001409249.1|  PilT domain-containing protein ...   117    6e-25
gi|337266992|ref|YP_004611047.1|  PilT protein domain-containing ...   115    3e-24
gi|114328764|ref|YP_745921.1|  putative cytoplasmic protein [Gran...   112    2e-23
gi|299138782|ref|ZP_07031960.1|  PilT protein domain protein [Aci...   112    3e-23
gi|284041784|ref|YP_003392124.1|  PilT protein domain protein [Co...   108    3e-22
gi|254431434|ref|ZP_05045137.1|  hypothetical protein CPCC7001_13...   107    5e-22
gi|338822860|gb|EGP56828.1|  PilT domain-containing protein [Agro...   107    7e-22
gi|84495502|ref|ZP_00994621.1|  hypothetical protein JNB_11889 [J...   107    8e-22
gi|336116293|ref|YP_004571059.1|  hypothetical protein MLP_06420 ...   104    5e-21
gi|120402183|ref|YP_952012.1|  PilT domain-containing protein [My...   103    1e-20
gi|344341724|ref|ZP_08772640.1|  PilT protein domain protein [Thi...   102    1e-20
gi|325293169|ref|YP_004279033.1|  PilT domain-containing protein ...   102    2e-20
gi|15609896|ref|NP_217275.1|  hypothetical protein Rv2759c [Mycob...   101    3e-20
gi|256824143|ref|YP_003148103.1|  hypothetical protein Ksed_02550...   101    4e-20
gi|192292981|ref|YP_001993586.1|  PilT protein domain-containing ...   100    6e-20
gi|39937202|ref|NP_949478.1|  PilT protein N-terminal [Rhodopseud...   100    8e-20
gi|167647416|ref|YP_001685079.1|  PilT domain-containing protein ...   100    1e-19
gi|258650323|ref|YP_003199479.1|  PilT protein domain-containing ...   100    1e-19
gi|15608879|ref|NP_216257.1|  hypothetical protein Rv1741 [Mycoba...  98.2    4e-19
gi|340776555|ref|ZP_08696498.1|  PilT protein-like protein [Aceto...  97.4    6e-19
gi|218295220|ref|ZP_03496056.1|  PilT protein domain protein [The...  96.3    2e-18
gi|31792929|ref|NP_855422.1|  hypothetical protein Mb1770 [Mycoba...  95.9    2e-18
gi|167648431|ref|YP_001686094.1|  PilT domain-containing protein ...  95.9    2e-18
gi|84497913|ref|ZP_00996710.1|  hypothetical protein JNB_17538 [J...  95.5    3e-18
gi|226227509|ref|YP_002761615.1|  hypothetical protein GAU_2103 [...  95.1    3e-18
gi|316935649|ref|YP_004110631.1|  PilT domain-containing protein ...  95.1    3e-18
gi|91975924|ref|YP_568583.1|  PilT protein-like protein [Rhodopse...  94.7    4e-18
gi|318042898|ref|ZP_07974854.1|  hypothetical protein SCB01_14394...  94.4    5e-18
gi|291294623|ref|YP_003506021.1|  PilT domain-containing protein ...  94.4    5e-18


>gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycobacterium tuberculosis H37Rv]
 gi|15840025|ref|NP_335062.1| hypothetical protein MT0652 [Mycobacterium tuberculosis CDC1551]
 gi|31791806|ref|NP_854299.1| hypothetical protein Mb0640 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=131

 Score =  266 bits (681),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW
Sbjct  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF
Sbjct  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120

Query  121  QHTDIATVALP  131
            QHTDIATVALP
Sbjct  121  QHTDIATVALP  131


>gi|118472447|ref|YP_885674.1| PilT domain-containing protein [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173734|gb|ABK74630.1| PIN domain protein [Mycobacterium smegmatis str. MC2 155]
Length=129

 Score =  192 bits (488),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 104/128 (82%), Positives = 113/128 (89%), Gaps = 0/128 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSALVA+L+DEPDAE  E AV  D +R MSTASYLETA+VIE+RFGEPGGRELDLW
Sbjct  1    MVIDTSALVAILTDEPDAELLEGAVADDPVRTMSTASYLETAIVIESRFGEPGGRELDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            LHRA+V LVAV ADQADAAR AYR YGKGRHRAGLNYGDCFSY LAK+SGQPLLFKGE F
Sbjct  61   LHRASVALVAVDADQADAARLAYRRYGKGRHRAGLNYGDCFSYALAKVSGQPLLFKGEAF  120

Query  121  QHTDIATV  128
            + TD+A V
Sbjct  121  RLTDVAAV  128


>gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamburgensis X14]
 gi|91802780|gb|ABE65152.1| PilT protein-like [Nitrobacter hamburgensis X14]
Length=128

 Score =  167 bits (422),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 79/125 (64%), Positives = 96/125 (77%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTS +VA+  +EPDA RF   +  D +RL+S A+ LE A+VIEAR GE GG ELDLW
Sbjct  1    MVIDTSPIVAIFFNEPDAARFRERIADDPVRLISAATVLEAAMVIEARLGEAGGTELDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            LH+A V++V V A+ AD AR A+R YGKGRH AGLN+GDCFSY LA +SG+PLL+KG DF
Sbjct  61   LHKADVEIVPVTAEHADQARRAWRRYGKGRHPAGLNFGDCFSYALAALSGEPLLYKGNDF  120

Query  121  QHTDI  125
              TDI
Sbjct  121  SQTDI  125


>gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110 [Sinorhizobium fredii NGR234]
 gi|227338245|gb|ACP22464.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=128

 Score =  154 bits (388),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 74/125 (60%), Positives = 94/125 (76%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA++A+  +EP+AE +E  V     R +S A+ LE A+VIEAR GE G  ELDLW
Sbjct  1    MVIDTSAILAIAFNEPEAETYEQKVVDAPRRFISAATVLELAIVIEARLGEAGAAELDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L++A V++VAV A+Q   AR A+R+YGKGRH AGLNYGDCFSY LA+   +PLL+KG+DF
Sbjct  61   LYKAGVEVVAVDAEQIAVARRAWRSYGKGRHPAGLNYGDCFSYALARTRNEPLLYKGDDF  120

Query  121  QHTDI  125
              TDI
Sbjct  121  SRTDI  125


>gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
 gi|219952041|gb|ACL62432.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
Length=128

 Score =  153 bits (386),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 77/125 (62%), Positives = 96/125 (77%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA+VA+  DEP+A  FE  +  D +RL+S A+ LE A+V+E R GE GG ELDLW
Sbjct  1    MVIDTSAIVAIALDEPEAAGFERKIADDPVRLISAATVLEAAMVLETRLGEAGGSELDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            LH+A V++VAV  + AD AR A+R YGKGRH AGLN+GDCFSY LA ++G+PLLFKG DF
Sbjct  61   LHKAEVEIVAVEPEHADRARRAWRRYGKGRHSAGLNFGDCFSYALAALTGEPLLFKGNDF  120

Query  121  QHTDI  125
              TD+
Sbjct  121  SQTDV  125


>gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sinorhizobium meliloti 1021]
 gi|334315270|ref|YP_004547889.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|15073735|emb|CAC45376.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810691|gb|AEG03360.1| PilT protein domain protein [Sinorhizobium meliloti BL225C]
 gi|334094264|gb|AEG52275.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
 gi|336031808|gb|AEH77740.1| hypothetical protein SM11_chr0459 [Sinorhizobium meliloti SM11]
Length=128

 Score =  149 bits (375),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 71/125 (57%), Positives = 91/125 (73%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA+ A+  +E +A  F   +  D +RL+S A+ LE A+VIE R GE  G ELDLW
Sbjct  1    MVIDTSAIAAIAFNEQEAGSFREKIADDPVRLISAATALEAAMVIETRLGEAAGAELDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L++A V++VAV A+  D AR A+R +GKGRH AGLN+GDCFSY LA ++ +PLLFKG DF
Sbjct  61   LYKANVEIVAVTAEHMDQARRAWRRFGKGRHPAGLNFGDCFSYALAFLTNEPLLFKGSDF  120

Query  121  QHTDI  125
              TDI
Sbjct  121  SQTDI  125


>gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074054|gb|EDN70954.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=131

 Score =  143 bits (360),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 89/130 (69%), Gaps = 0/130 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSAL+A+L  EP+AE+F  A+ ++  RL+S  S LET +VIEAR G PG +ELDL 
Sbjct  1    MVIDTSALIAILLREPEAEKFAKAIISNRKRLLSAFSALETGVVIEARKGNPGKQELDLL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L    +D+VA++ +Q   A  A+R +GKG H A LN GDC SY LAK   +PLLFKG DF
Sbjct  61   LSYTKIDIVALNDEQVQMAMEAWRKFGKGHHPAKLNLGDCCSYALAKYFDEPLLFKGNDF  120

Query  121  QHTDIATVAL  130
              TDI  V L
Sbjct  121  NQTDIKIVQL  130


>gi|316934115|ref|YP_004109097.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315601829|gb|ADU44364.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=126

 Score =  140 bits (354),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 67/125 (54%), Positives = 88/125 (71%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTS +VA+  DEPDA   EA +  D +RL+S A+ LE  +V+E + G+ GGRE DLW
Sbjct  1    MVIDTSVIVAIALDEPDAAALEARIADDPVRLISAATVLEATIVLETKLGDAGGREFDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L +   ++V V A+Q +AAR A+R  GKGRH A LNYGDCF++ LA   G+PLL+KGEDF
Sbjct  61   LLKIGAEIVPVDAEQMEAARRAWRRTGKGRHAADLNYGDCFAHALAITRGEPLLYKGEDF  120

Query  121  QHTDI  125
               +I
Sbjct  121  AKMEI  125


>gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298510717|gb|EFI34620.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
Length=130

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 68/129 (53%), Positives = 89/129 (69%), Gaps = 0/129 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MV DTSA++A+L+ EP+A+     +      +MS+ S LET +V+EAR GE GGRELDL+
Sbjct  1    MVSDTSAIIAILTGEPEADVLTRVIAESPDVMMSSFSVLETGIVLEARKGEAGGRELDLF  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L RA V ++ + ++Q   AR A+R +GKGRH AGLN GDC +Y LAK +G PLLFKG DF
Sbjct  61   LQRARVRVMPLDSEQVRIAREAWRRFGKGRHPAGLNIGDCCAYALAKSTGAPLLFKGHDF  120

Query  121  QHTDIATVA  129
              TDI   A
Sbjct  121  SKTDILVAA  129


>gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369 [Synechococcus sp. CB0101]
Length=135

 Score =  135 bits (339),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 70/126 (56%), Positives = 92/126 (74%), Gaps = 2/126 (1%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAV-EADHIRLMSTASYLETALVIEARFGEPGGRELDL  59
            MVID SA++A+L +EP+   F AA+  ADH  L S AS +E ++VIEAR+G  G  +LDL
Sbjct  1    MVIDPSAVLAILQNEPERPAFNAAIASADHCAL-SAASLVELSIVIEARYGSDGQGDLDL  59

Query  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            +L  A + +V++  +QA+ ARAA+  YGKGRHRA LN GDCFSY LA+   QPLLFKG+D
Sbjct  60   FLSTAQISIVSLDREQAEIARAAFARYGKGRHRASLNLGDCFSYALAQWLEQPLLFKGDD  119

Query  120  FQHTDI  125
            F HTD+
Sbjct  120  FCHTDL  125


>gi|153012021|ref|YP_001373233.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563909|gb|ABS17404.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=128

 Score =  134 bits (337),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 66/125 (53%), Positives = 84/125 (68%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA+V +L +EP AER E A+ AD IRL+      E  +V+ +R GE    E+DLW
Sbjct  1    MVIDTSAIVTILRNEPQAERLERAIVADPIRLVPATCVFEARMVMVSRRGEHALAEIDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L + A +++ V A+  D A  A+ TYG GRHRAGLN+ DCFSY LAK +   LLF GEDF
Sbjct  61   LSKIAAEIIPVDAELVDLATQAWLTYGMGRHRAGLNFADCFSYALAKRADDALLFIGEDF  120

Query  121  QHTDI  125
            + TDI
Sbjct  121  KQTDI  125


>gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
 gi|196192059|gb|EDX87023.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
Length=131

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 68/130 (53%), Positives = 86/130 (67%), Gaps = 0/130 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA+VA+L DEP+   F  A+ A   RLMS ++ LE  LVIE+R    G  EL+L+
Sbjct  1    MVIDTSAIVAVLFDEPERTDFVYAIAAASTRLMSASTLLECYLVIESRKQALGRTELELF  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            ++ A   +V     Q   A AA+R YGKGRH AGLN+GDCF+Y LAK   +PLLFKG DF
Sbjct  61   VYEADFKVVPFDKVQTVLAAAAWREYGKGRHSAGLNFGDCFAYALAKAREEPLLFKGNDF  120

Query  121  QHTDIATVAL  130
              TDI  V++
Sbjct  121  SQTDITPVSI  130


>gi|334321234|ref|YP_004557774.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334100022|gb|AEG58030.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=128

 Score =  130 bits (327),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 61/128 (48%), Positives = 86/128 (68%), Gaps = 0/128 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            M++DTSALVA+L  EP A RF   +       +S ASY+E ++V+E++ G  G R+ + +
Sbjct  1    MIVDTSALVAILYREPQAARFVNYIHDAETTRISVASYIELSMVVESQLGPDGMRQAEAF  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
              RA + +  V  +  + AR A+  +GKGRH+AGLN+GDCF+Y LAK SG+PLLFKG DF
Sbjct  61   FRRAGIIVEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF  120

Query  121  QHTDIATV  128
              TD+ TV
Sbjct  121  SQTDVLTV  128


>gi|90422855|ref|YP_531225.1| PilT protein-like protein [Rhodopseudomonas palustris BisB18]
 gi|90104869|gb|ABD86906.1| PilT protein-like [Rhodopseudomonas palustris BisB18]
Length=132

 Score =  130 bits (327),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 72/125 (58%), Positives = 88/125 (71%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA+VA+  +E DA   E  +  D +RL+S A+ +E  +V+E R GE GGRE DL 
Sbjct  1    MVIDTSAIVAIALNEADASDIEIRIADDPVRLISAATVVEATMVLETRLGETGGREFDLR  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L +   ++VA  A+QADAAR A+R YGKG H A LNYGDCFSY LA   G+PLLFKGEDF
Sbjct  61   LLKIGAEIVAGDAEQADAARRAWRRYGKGHHAAALNYGDCFSYALAVTRGEPLLFKGEDF  120

Query  121  QHTDI  125
              TDI
Sbjct  121  AQTDI  125


>gi|270208572|ref|YP_003329343.1| hypothetical protein pSmeSM11ap045 [Sinorhizobium meliloti]
 gi|76880846|gb|ABA56016.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=128

 Score =  130 bits (326),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 62/125 (50%), Positives = 85/125 (68%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA+VA+L +EP+A + E A+ A+ +RL+     LE  +V+ +R GE    E+DLW
Sbjct  1    MVIDTSAIVAILRNEPEAAKLERALVANPVRLVPATCVLEARMVLVSRRGEHALAEIDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L +   D+++V +D  D A  A+  YGKGRH A LN+ DCFSY LAK + +PLLF G+DF
Sbjct  61   LSKIEADIISVDSDLVDLATQAWLIYGKGRHPAALNFADCFSYALAKRADEPLLFIGKDF  120

Query  121  QHTDI  125
              TDI
Sbjct  121  LQTDI  125


>gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334 [Synechococcus sp. CB0101]
Length=132

 Score =  130 bits (326),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 68/126 (54%), Positives = 90/126 (72%), Gaps = 2/126 (1%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAV-EADHIRLMSTASYLETALVIEARFGEPGGRELDL  59
            MVID SA++A+L +EP+ + F AA+  ADH  L S A  +E ++VIEAR+G  G  +LDL
Sbjct  1    MVIDPSAVLAILQNEPERQAFNAAIASADHCAL-SAALLVELSIVIEARYGSDGQGDLDL  59

Query  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            +L+ A + +V++   QA+ ARAA+  YGKGRHRA LN GDCFSY  A+   QPLLFKG D
Sbjct  60   FLNTAQISIVSLDRGQAEIARAAFARYGKGRHRASLNLGDCFSYARAQWLEQPLLFKGHD  119

Query  120  FQHTDI  125
            F HTD+
Sbjct  120  FCHTDL  125


>gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|115259119|emb|CAK10230.1| conserved hypothetical PIN domain protein [Rhizobium leguminosarum 
bv. viciae 3841]
Length=128

 Score =  127 bits (319),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 59/125 (48%), Positives = 84/125 (68%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            M+IDTSALVA+L  EP+A  F   +    +  +S A+Y+E ++V+E + G  G R+ D +
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQADAF  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
              RA + +  V  +  + AR A+  +GKGRH+AGLN+GDCF+Y LAK SG+PLLFKG DF
Sbjct  61   FRRAGIIIEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF  120

Query  121  QHTDI  125
              TD+
Sbjct  121  AQTDV  125


>gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-00170 [Sphingobium japonicum UT26S]
 gi|292677678|dbj|BAI99193.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=129

 Score =  126 bits (316),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 88/130 (68%), Gaps = 2/130 (1%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAV-EADHIRLMSTASYLETALVIEARFGEPGGRELDL  59
            M++DTSALVA+L  EP+A  F  A+ +AD  R+ S ASY+E ++VIE + G  G R+ + 
Sbjct  1    MILDTSALVAILYREPEAATFAQAIHDADACRI-SVASYVELSMVIERQLGPEGMRQTEA  59

Query  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            +  RA + +  V  D  + AR A+  +GKGRH+AGLN+GDCFSY LAK + +PLLFKG D
Sbjct  60   FFRRAGITIEPVTLDHGELARQAFLDFGKGRHKAGLNFGDCFSYALAKATDEPLLFKGND  119

Query  120  FQHTDIATVA  129
            F  TDI   A
Sbjct  120  FALTDIEAAA  129


>gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240863402|gb|ACS61064.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=128

 Score =  124 bits (311),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 57/125 (46%), Positives = 84/125 (68%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            M+IDTSALVA+L  EP+A  F   +    +  +S A+Y+E ++V+E + G  G R+ + +
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEAF  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
              RA + +  V  +  + AR A+  +G+GRH+AGLN+GDCF+Y LAK SG+PLLFKG DF
Sbjct  61   FRRAGIIIEPVTLEHCELARQAFLDFGQGRHKAGLNFGDCFAYALAKASGEPLLFKGNDF  120

Query  121  QHTDI  125
              TD+
Sbjct  121  AQTDV  125


>gi|87123252|ref|ZP_01079103.1| hypothetical protein RS9917_05315 [Synechococcus sp. RS9917]
 gi|86168972|gb|EAQ70228.1| hypothetical protein RS9917_05315 [Synechococcus sp. RS9917]
Length=130

 Score =  123 bits (309),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 69/130 (54%), Positives = 85/130 (66%), Gaps = 0/130 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSAL+A+L  EP+A  F   +    + L+STA+ LET+LV+E + G  G  EL+L 
Sbjct  1    MVIDTSALMAILKAEPEAADFLRCLSRSELSLLSTATRLETSLVVEGQLGAAGLPELELL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L RA V+ V         A   +R YGKGRHRA LN GDCFSYGLA+   QPLLFKGEDF
Sbjct  61   LSRAGVETVPFELTHWHWALQGWRRYGKGRHRAALNLGDCFSYGLARALDQPLLFKGEDF  120

Query  121  QHTDIATVAL  130
              TD+A+  L
Sbjct  121  ALTDLASAGL  130


>gi|339499339|ref|YP_004697374.1| PilT protein domain-containing protein [Spirochaeta caldaria 
DSM 7334]
 gi|338833688|gb|AEJ18866.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131

 Score =  117 bits (293),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MV+D+SA++A+L  E DA+ +  A+ +    L+S  ++LE A+VIEAR G  GG  L   
Sbjct  1    MVVDSSAILAILLGESDADLYIDALCSGERLLISAVNHLEVAIVIEARKGAIGGESLHSL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            +  + ++++ + A QA+ A AA+RTYGKGRH A LN GDC +Y LAK   QPLL+KG+DF
Sbjct  61   MTHSGIEVLPLDASQAEIALAAWRTYGKGRHPAALNLGDCAAYALAKTLNQPLLYKGDDF  120

Query  121  QHTDI  125
              TDI
Sbjct  121  SKTDI  125


>gi|154243676|ref|YP_001409249.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162798|gb|ABS70013.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=128

 Score =  117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 58/125 (47%), Positives = 79/125 (64%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSA+VA+L +EP+A+  E  +    +RL+      E  +V+ +R GE    E+DLW
Sbjct  1    MVIDTSAIVAILRNEPEADALERLIVGAPVRLVPATCVFEARMVLVSRRGEHALAEIDLW  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L +   D++ V A+ AD A  A+  +GKGRH A LN+ DCFSY L+K S + LLF G DF
Sbjct  61   LTKIGADIIPVDAELADLATQAWLAHGKGRHPAALNFADCFSYALSKRSNERLLFIGNDF  120

Query  121  QHTDI  125
              TDI
Sbjct  121  SKTDI  125


>gi|337266992|ref|YP_004611047.1| PilT protein domain-containing protein [Mesorhizobium opportunistum 
WSM2075]
 gi|336027302|gb|AEH86953.1| PilT protein domain protein [Mesorhizobium opportunistum WSM2075]
Length=129

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 60/131 (46%), Positives = 82/131 (63%), Gaps = 12/131 (9%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRE----  56
            M+ID+S LVA+L  EP  ERF  A+   + RL+   ++LET +V+       GGR+    
Sbjct  1    MIIDSSVLVAILRLEPAYERFVLAITQANRRLLPAPTFLETTMVLA------GGRQDEIL  54

Query  57   --LDLWLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLL  114
              LD +LH A+++ V   AD A  AR A+  YGKGRH A LN+GDC +Y  A++   PLL
Sbjct  55   DRLDSFLHTASIETVPFTADHAAVARQAFLRYGKGRHPAALNFGDCIAYATARLEAMPLL  114

Query  115  FKGEDFQHTDI  125
            FKG+DF+ TDI
Sbjct  115  FKGDDFRLTDI  125


>gi|114328764|ref|YP_745921.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316938|gb|ABI62998.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1]
Length=141

 Score =  112 bits (281),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 59/132 (45%), Positives = 84/132 (64%), Gaps = 2/132 (1%)

Query  1    MVIDTSALVAMLSDEPDAERF-EAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDL  59
            M++DTSAL+A++  EPD  R+ EA V A+  R MS A++LE ++++E + G   G   D 
Sbjct  1    MILDTSALLAIVLGEPDGPRYLEALVAAERPR-MSAANWLEASMMVEEKGGRLAGLRFDE  59

Query  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            ++  A +++V V A+QA  AR A+R +G+ RH   LNYGDC +Y LAK     LL+KG D
Sbjct  60   FIRAAGIEIVPVSAEQATVARGAWRYFGRFRHAHRLNYGDCLAYALAKTESDRLLYKGRD  119

Query  120  FQHTDIATVALP  131
            F HTDI     P
Sbjct  120  FDHTDIEPAIQP  131


>gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599418|gb|EFI55578.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=128

 Score =  112 bits (279),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 59/125 (48%), Positives = 80/125 (64%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVID+SALVA+L  EPDA  + +A+  D  RL+S A+ +ET++V+  R        LD  
Sbjct  1    MVIDSSALVAILLAEPDASIYISAILNDVTRLISAATLVETSIVMIRRREPDAIAALDAV  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            + R  + ++ V  +QA  AR  +R +GKG  RAGLN+GDCFSY LA    +PLLFKG DF
Sbjct  61   VARLQLTVIPVDREQALLARQGFRRFGKGLDRAGLNFGDCFSYALAMHLNEPLLFKGNDF  120

Query  121  QHTDI  125
              TD+
Sbjct  121  TFTDV  125


>gi|284041784|ref|YP_003392124.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283946005|gb|ADB48749.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=129

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 59/125 (48%), Positives = 76/125 (61%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MV+D+SA+VA+L DE DA    A +      L+S AS LE ++V+    G  G R+LD  
Sbjct  1    MVVDSSAVVAILLDEEDATELSATLTDVDDPLLSAASLLECSIVMHKNSGVVGLRDLDDL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L    +  V V   QA AAR A+  +GKG   AGLN+GDCFSY LA+   +PLLFKG DF
Sbjct  61   LQETRIRCVPVDLTQALAARRAWVRFGKGNSPAGLNFGDCFSYALARTMDRPLLFKGGDF  120

Query  121  QHTDI  125
              TD+
Sbjct  121  TRTDV  125


>gi|254431434|ref|ZP_05045137.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
 gi|197625887|gb|EDY38446.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
Length=133

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 66/125 (53%), Positives = 85/125 (68%), Gaps = 0/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVID SALVA+L +EP+   F  A+ A  +  +S AS +E ++VIE + G  G  +LDL+
Sbjct  1    MVIDPSALVAILLNEPERRAFIEAIAAAEVCWLSAASLVELSIVIEVKLGPDGLDDLDLF  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L  A V+ VA   DQA  ARAA++ +GKGRH AGLN GDC +Y LA++   PLLFKG DF
Sbjct  61   LATAGVETVAFDHDQALIARAAFQRFGKGRHPAGLNLGDCCAYALARVREAPLLFKGRDF  120

Query  121  QHTDI  125
             HTDI
Sbjct  121  VHTDI  125


>gi|338822860|gb|EGP56828.1| PilT domain-containing protein [Agrobacterium tumefaciens F2]
Length=127

 Score =  107 bits (267),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 58/127 (46%), Positives = 77/127 (61%), Gaps = 3/127 (2%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            +VIDTSAL+A+L DEP A+   AA+E D   L+S  +  E  +V + R      RELD+ 
Sbjct  2    IVIDTSALMAILLDEPTADACTAALETDEPLLISAGTLAEAMIVAQRRNRV---RELDML  58

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            +   ++D+  V    A     AYR +GKG H AGLN+GDCF+Y LAK  G PLL+ G DF
Sbjct  59   IEGLSIDVRHVTPKSAHGVSEAYRIWGKGIHPAGLNFGDCFAYDLAKTEGCPLLYVGNDF  118

Query  121  QHTDIAT  127
              TDI +
Sbjct  119  SQTDIVS  125


>gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
 gi|84384995|gb|EAQ00875.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
Length=132

 Score =  107 bits (266),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 58/127 (46%), Positives = 81/127 (64%), Gaps = 2/127 (1%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEA--DHIRLMSTASYLETALVIEARFGEPGGRELD  58
            MV+DTSALVA++  EPDAE F+ A+ A      +MS  + +E A+V+EAR G    REL+
Sbjct  1    MVVDTSALVAIVLGEPDAESFKDALRAAPPGSLVMSPVTAVEAAMVVEARQGPDAARELE  60

Query  59   LWLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGE  118
              +    + +  +  DQ+ AA   +R +GKGRH A LN GD F Y LA+ +G+ LLFKG+
Sbjct  61   GLIATLFLRIEPLDGDQSAAAIEGWRRFGKGRHPASLNLGDLFPYALARTTGEALLFKGD  120

Query  119  DFQHTDI  125
            DF  TD+
Sbjct  121  DFARTDV  127


>gi|336116293|ref|YP_004571059.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
 gi|334684071|dbj|BAK33656.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
Length=133

 Score =  104 bits (259),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 57/126 (46%), Positives = 81/126 (65%), Gaps = 1/126 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRL-MSTASYLETALVIEARFGEPGGRELDL  59
            +V+DTSA++A+L  EPDA R+  A+  +   L MS  S +ET +V+E+R G     +L+ 
Sbjct  3    VVVDTSAVLAVLLGEPDASRYADALSRNIGDLHMSAVSLVETRIVLESRKGPDAAADLET  62

Query  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119
             + R ++ + AV ADQAD A  A+R +GKG H A LN GDCFSY L +     LL+KG+D
Sbjct  63   LIARVSIRVEAVTADQADRAWGAWRRFGKGCHPARLNLGDCFSYALVRALRGNLLYKGDD  122

Query  120  FQHTDI  125
            F  TD+
Sbjct  123  FSQTDV  128


>gi|120402183|ref|YP_952012.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955001|gb|ABM12006.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=131

 Score =  103 bits (257),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 59/128 (47%), Positives = 80/128 (63%), Gaps = 1/128 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            M+ D+SA++A+L DE DA  +  A+ A  +R +S ASYLE  +V++A+      R LD  
Sbjct  1    MIADSSAIIAILRDEDDAVDYARALAAADVRRLSAASYLECGIVLDAQRDPVVSRALDEL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            +  AA+ +  V   QA  AR AY  +GKG  H AGLN+GDC SY LA    +PLL+KG D
Sbjct  61   IDEAAMTIEPVTERQAKLARRAYADFGKGSGHPAGLNFGDCLSYALALDRREPLLWKGND  120

Query  120  FQHTDIAT  127
            F HT IA+
Sbjct  121  FGHTGIAS  128


>gi|344341724|ref|ZP_08772640.1| PilT protein domain protein [Thiocapsa marina 5811]
 gi|343798327|gb|EGV16285.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=135

 Score =  102 bits (255),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 64/132 (49%), Positives = 79/132 (60%), Gaps = 1/132 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            +VIDTSALVA++  EP+ E F   ++     L+ST + LE  +V+  R GE     LD  
Sbjct  2    IVIDTSALVAIVFGEPEREAFVDIIQKAPRALISTPTALEARMVVHGRRGERAVVLLDDL  61

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            L     +LVA    +  AA AA+  YG+G  H AGLNYGD FSY LAK+ G PLLFKGED
Sbjct  62   LRLPMFELVAPGKAELQAAFAAFVAYGRGSGHAAGLNYGDLFSYALAKVRGLPLLFKGED  121

Query  120  FQHTDIATVALP  131
            F  TDI  V  P
Sbjct  122  FSQTDILPVWRP  133


>gi|325293169|ref|YP_004279033.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
 gi|325061022|gb|ADY64713.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
Length=127

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 58/126 (47%), Positives = 77/126 (62%), Gaps = 3/126 (2%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSAL+A+L DEP A+    A++ D   L+S A  L  A++   R G    REL++ 
Sbjct  2    MVIDTSALLAILLDEPTADACAMALDTDEPLLIS-AGTLAEAVIAAQRRGR--SRELEML  58

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            +   +V++  V A        AYR +GKG H AGLN+GDCF+Y LAK  G PLL+ G DF
Sbjct  59   IEGLSVEIKPVTAKSIRGISEAYRIWGKGIHPAGLNFGDCFAYELAKAEGCPLLYVGNDF  118

Query  121  QHTDIA  126
              TDI+
Sbjct  119  SQTDIS  124


>gi|15609896|ref|NP_217275.1| hypothetical protein Rv2759c [Mycobacterium tuberculosis H37Rv]
 gi|15842297|ref|NP_337334.1| hypothetical protein MT2829 [Mycobacterium tuberculosis CDC1551]
 gi|31793933|ref|NP_856426.1| hypothetical protein Mb2780c [Mycobacterium bovis AF2122/97]
 82 more sequence titles
 Length=131

 Score =  101 bits (252),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 55/126 (44%), Positives = 79/126 (63%), Gaps = 1/126 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            M++DTSA+VA++S E  A+  + A+E      MS  +Y+E   +++ R      R +D  
Sbjct  1    MIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            L    + + AV ADQA  A  AYR YG+G  H A LN GD +SY LA+++G+PLLF+G+D
Sbjct  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120

Query  120  FQHTDI  125
            F HTDI
Sbjct  121  FTHTDI  126


>gi|256824143|ref|YP_003148103.1| hypothetical protein Ksed_02550 [Kytococcus sedentarius DSM 20547]
 gi|256687536|gb|ACV05338.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 
20547]
Length=130

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 77/126 (62%), Gaps = 1/126 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            M++D+SALVA+L  EP+ +    A++      M+ ASYLE  +V++ R      R+ D  
Sbjct  1    MIVDSSALVAILLAEPERQALLEAIQQAPEAAMTAASYLEVGMVVDGRGNPVLSRQYDAL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            L    +++V   A+QA  ARAA+R +G+G  H A LN+GDC SY  A   G PLLF G+D
Sbjct  61   LEALGIEVVDTTAEQARVARAAHRDFGRGSGHPARLNFGDCLSYAAAVQDGVPLLFTGDD  120

Query  120  FQHTDI  125
            F HTD+
Sbjct  121  FIHTDV  126


>gi|192292981|ref|YP_001993586.1| PilT protein domain-containing protein [Rhodopseudomonas palustris 
TIE-1]
 gi|192286730|gb|ACF03111.1| PilT protein domain protein [Rhodopseudomonas palustris TIE-1]
Length=134

 Score =  100 bits (250),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 57/133 (43%), Positives = 84/133 (64%), Gaps = 4/133 (3%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEA-RFGEPGGRE--L  57
            +VIDTSA++A+  +EP+A +F   + +D   ++S+ + LETA+V+   +  +P   E  L
Sbjct  2    IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERWL  61

Query  58   DLWLHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFK  116
            D ++  A + +  V  +QA  AR+A+  +GKG  H+A LNYGDCF+Y LAK    PLL K
Sbjct  62   DDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKAVNAPLLCK  121

Query  117  GEDFQHTDIATVA  129
            G DF  TDI  VA
Sbjct  122  GNDFPLTDIPLVA  134


>gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseudomonas palustris CGA009]
 gi|39651060|emb|CAE29583.1| PilT protein, N-terminal [Rhodopseudomonas palustris CGA009]
Length=134

 Score =  100 bits (248),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 57/133 (43%), Positives = 84/133 (64%), Gaps = 4/133 (3%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEA-RFGEPGGRE--L  57
            +VIDTSA++A+  +EP+A +F   + +D   ++S+ + LETA+V+   +  +P   E  L
Sbjct  2    IVIDTSAIIAIFREEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERWL  61

Query  58   DLWLHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFK  116
            D ++  A + +  V  +QA  AR+A+  +GKG  H+A LNYGDCF+Y LAK    PLL K
Sbjct  62   DDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKALNAPLLCK  121

Query  117  GEDFQHTDIATVA  129
            G DF  TDI  VA
Sbjct  122  GNDFPLTDIPLVA  134


>gi|167647416|ref|YP_001685079.1| PilT domain-containing protein [Caulobacter sp. K31]
 gi|167349846|gb|ABZ72581.1| PilT protein domain protein [Caulobacter sp. K31]
Length=132

 Score =  100 bits (248),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 58/128 (46%), Positives = 81/128 (64%), Gaps = 5/128 (3%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFG-EPGGREL--  57
            +V+DTSAL+A++ +E D + F  A+     +LMS A+ +E A V    FG E    +L  
Sbjct  2    IVVDTSALMAIVLNEVDRDVFTEAMVRQPRKLMSAATVVEAAQVYAMAFGPEIAAGKLYD  61

Query  58   DLWLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKG  117
            DL + R  ++++ +  + A  A  A   +G+GRHRA LN+GDCFSY LAK+SG PLLFKG
Sbjct  62   DLRMLR--IEVINLTDEHARIAVEAAMRFGRGRHRAKLNFGDCFSYALAKVSGLPLLFKG  119

Query  118  EDFQHTDI  125
             DF  TDI
Sbjct  120  NDFTQTDI  127


>gi|258650323|ref|YP_003199479.1| PilT protein domain-containing protein [Nakamurella multipartita 
DSM 44233]
 gi|258553548|gb|ACV76490.1| PilT protein domain protein [Nakamurella multipartita DSM 44233]
Length=133

 Score =  100 bits (248),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 63/128 (50%), Positives = 81/128 (64%), Gaps = 1/128 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRL-MSTASYLETALVIEARFGEPGGRELDL  59
            +V+DTSA+ A++  EPDAE F AA+      L +S  + +E  +V+EAR G     + + 
Sbjct  4    VVLDTSAVAAVIFGEPDAEAFAAALTRHGGELSISAVTRVELEIVLEARQGSEAVSDAEA  63

Query  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119
               R  V    V A QA AA AA+R +GKGRH AGLN GDCFSY LA+ +G PLLFKG D
Sbjct  64   MFDRLGVITEPVDAAQAGAAFAAWRRFGKGRHPAGLNLGDCFSYALARAAGAPLLFKGND  123

Query  120  FQHTDIAT  127
            F  TDIA+
Sbjct  124  FAQTDIAS  131


>gi|15608879|ref|NP_216257.1| hypothetical protein Rv1741 [Mycobacterium tuberculosis H37Rv]
 gi|15841205|ref|NP_336242.1| hypothetical protein MT1783 [Mycobacterium tuberculosis CDC1551]
 gi|148661540|ref|YP_001283063.1| hypothetical protein MRA_1752 [Mycobacterium tuberculosis H37Ra]
 63 more sequence titles
 Length=82

 Score = 98.2 bits (243),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 59/128 (47%), Positives = 66/128 (52%), Gaps = 49/128 (38%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSALVAML+DEP+A+RFE AV ADH+ LMSTASY E A VIE RFGEPGGRE    
Sbjct  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE----  56

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
                                                          K+SGQPLL+KG+DF
Sbjct  57   ---------------------------------------------PKVSGQPLLYKGDDF  71

Query  121  QHTDIATV  128
               DI  V
Sbjct  72   ACIDIRAV  79


>gi|340776555|ref|ZP_08696498.1| PilT protein-like protein [Acetobacter aceti NBRC 14818]
Length=141

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 57/129 (45%), Positives = 79/129 (62%), Gaps = 4/129 (3%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEA-RFGEPGGRE--L  57
            +V+DTSA++A+   EP+A  F   +  D   ++S A+ +E +LV+   +   P   E  L
Sbjct  2    IVVDTSAVIAIFRQEPEAADFATRIGNDDDPVISAATVVEASLVLRGLKQISPTRAEAWL  61

Query  58   DLWLHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFK  116
            D ++  A + +  V  +QA  AR A+  +GKG  H AGLNYGDCFSY LAK  G PLLFK
Sbjct  62   DEFIRIAGMRIEPVTPEQAALARDAHIRFGKGTGHPAGLNYGDCFSYALAKAMGAPLLFK  121

Query  117  GEDFQHTDI  125
            GEDF  TD+
Sbjct  122  GEDFTRTDV  130


>gi|218295220|ref|ZP_03496056.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244423|gb|EED10948.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=130

 Score = 96.3 bits (238),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 73/126 (58%), Gaps = 0/126 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MV+DTSAL+A+L  E   E     +   H R ++  +  E  +V+ AR G      L   
Sbjct  1    MVLDTSALLAILFREEGYEDLLEEIRRAHPRKVAAPTLAEAGIVLGARLGFERVYLLLAL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L     +++      A  A +AYR YG+GRH AGLN+GDC SY LAK+ G+PLL+KGEDF
Sbjct  61   LSELQAEVIPFSEAHAREAISAYRRYGRGRHPAGLNFGDCLSYALAKVEGEPLLYKGEDF  120

Query  121  QHTDIA  126
              TD+A
Sbjct  121  DRTDLA  126


>gi|31792929|ref|NP_855422.1| hypothetical protein Mb1770 [Mycobacterium bovis AF2122/97]
 gi|121637649|ref|YP_977872.1| hypothetical protein BCG_1780 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990124|ref|YP_002644811.1| hypothetical protein JTY_1755 [Mycobacterium bovis BCG str. Tokyo 
172]
 8 more sequence titles
 Length=82

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 58/128 (46%), Positives = 65/128 (51%), Gaps = 49/128 (38%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            MVIDTSALVAML+DEP+A+RFE AV ADH+ LMSTASY E A VIE RFGEPGGRE    
Sbjct  1    MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGRE----  56

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
                                                          K+SGQPLL+ G+DF
Sbjct  57   ---------------------------------------------PKVSGQPLLYTGDDF  71

Query  121  QHTDIATV  128
               DI  V
Sbjct  72   ACIDIRAV  79


>gi|167648431|ref|YP_001686094.1| PilT domain-containing protein [Caulobacter sp. K31]
 gi|167350861|gb|ABZ73596.1| PilT protein domain protein [Caulobacter sp. K31]
Length=131

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 53/125 (43%), Positives = 73/125 (59%), Gaps = 1/125 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            +VIDTSALVA+ ++EP+ + F   +EA    L+S  +Y+E  +V+  R   P     D W
Sbjct  3    LVIDTSALVAIATEEPECDSFIEVLEAADNLLISPMNYVEAGVVLVGRRFFPSRETFDEW  62

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDF  120
            L    + + A     A  A  AY ++GKGRH A LN  DCF+Y LAK    PLL+KG+DF
Sbjct  63   LSNYRIQVAAEPVIDA-LALDAYLSFGKGRHPAKLNLADCFAYALAKQLDAPLLYKGDDF  121

Query  121  QHTDI  125
              TD+
Sbjct  122  PLTDV  126


>gi|84497913|ref|ZP_00996710.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
 gi|84381413|gb|EAP97296.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
Length=132

 Score = 95.5 bits (236),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 56/126 (45%), Positives = 79/126 (63%), Gaps = 1/126 (0%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60
            M++D+SA+VA+   EP+  RF   + A    L+S A+Y+E  +V++ +  E     LD  
Sbjct  1    MIVDSSAIVAIHEGEPERARFLDVLAAARGSLISAATYVECGVVLDLKRPEQPTNRLDEL  60

Query  61   LHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFKGED  119
            L    + +VA+  +QA  AR A+R YG+G  H A LN GDCFSY LA  + +PLLFKGED
Sbjct  61   LDEFDIKVVALTPEQARVARRAHRRYGRGSGHPAKLNLGDCFSYALAMSTDEPLLFKGED  120

Query  120  FQHTDI  125
            F HTD+
Sbjct  121  FTHTDV  126


>gi|226227509|ref|YP_002761615.1| hypothetical protein GAU_2103 [Gemmatimonas aurantiaca T-27]
 gi|226090700|dbj|BAH39145.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length=130

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 55/133 (42%), Positives = 77/133 (58%), Gaps = 6/133 (4%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGG---REL  57
            M++ TS+LVA+  +  +A     A+    +RL+S A+ +E A+V+    GE  G    EL
Sbjct  1    MILTTSSLVALWRNTAEASALHTAIMRSPMRLISAATVVEAAMVL---MGERRGGSDLEL  57

Query  58   DLWLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKG  117
            D  L    V +V    D A  AR A RTYG+GRH AGL +GDC +Y LA  +G+P+L  G
Sbjct  58   DALLRELEVTVVPFTEDHAHRAREAARTYGRGRHAAGLTFGDCIAYALAGATGEPVLGAG  117

Query  118  EDFQHTDIATVAL  130
            + F  TDI  VA+
Sbjct  118  DQFTRTDIERVAI  130


>gi|316935649|ref|YP_004110631.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315603363|gb|ADU45898.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=134

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 56/133 (43%), Positives = 82/133 (62%), Gaps = 4/133 (3%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEA-RFGEPGG--REL  57
            +VIDTSA++A+   E +A +F   + +D   ++S+ + LETA+V+   +  +P    R L
Sbjct  2    IVIDTSAIIAIFRKEQEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDVQPAKAERWL  61

Query  58   DLWLHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFK  116
            D ++  A + +  V  +QA  AR+A+  +GKG  H+A LNYGDCF+Y LAK    PLL K
Sbjct  62   DDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYVLAKALNAPLLCK  121

Query  117  GEDFQHTDIATVA  129
            G DF  TDI  VA
Sbjct  122  GNDFPLTDIPLVA  134


>gi|91975924|ref|YP_568583.1| PilT protein-like protein [Rhodopseudomonas palustris BisB5]
 gi|91682380|gb|ABE38682.1| PilT protein-like [Rhodopseudomonas palustris BisB5]
Length=133

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 56/130 (44%), Positives = 79/130 (61%), Gaps = 4/130 (3%)

Query  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIE-ARFGEPGG--REL  57
            +V+DTS ++A+   E +A RF   + AD   +MS A+ +E ++V+   +   P    R L
Sbjct  2    IVLDTSVVIAIFRKEEEATRFAHRIAADDQPIMSAANLIEASIVLRGVKQIAPAKAERWL  61

Query  58   DLWLHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFK  116
            D ++  A + +  V  +QA  AR A+  +GKG  HRA LNYGDCF+YGLAK    PLL K
Sbjct  62   DQFIAGAGIRIEPVTPEQAQLARLAHLRFGKGTGHRAALNYGDCFAYGLAKAMDAPLLCK  121

Query  117  GEDFQHTDIA  126
            G+DF  TDIA
Sbjct  122  GDDFPLTDIA  131


>gi|318042898|ref|ZP_07974854.1| hypothetical protein SCB01_14394 [Synechococcus sp. CB0101]
Length=119

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 54/119 (46%), Positives = 65/119 (55%), Gaps = 0/119 (0%)

Query  11   MLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLWLHRAAVDLVA  70
            ML  EP+AE            L+S A+ LE  LV E         +L+  L    V +V 
Sbjct  1    MLLREPEAEALLDRAARTESVLLSAATRLELTLVAEGSCFNSTSADLEALLSNLRVQVVP  60

Query  71   VHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDFQHTDIATVA  129
             +AD    A   +R YGKGRH+A LN GDCFSYGLAK    PLLFKGEDFQ+TD+   A
Sbjct  61   FNADHMRWALHGWRHYGKGRHKAALNLGDCFSYGLAKSMDAPLLFKGEDFQYTDVKVPA  119


>gi|291294623|ref|YP_003506021.1| PilT domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290469582|gb|ADD27001.1| PilT protein domain protein [Meiothermus ruber DSM 1279]
Length=126

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 51/127 (41%), Positives = 75/127 (60%), Gaps = 2/127 (1%)

Query  1    MVIDTSALVAMLSDEP-DAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDL  59
            MV+D+S LV ++  EP   E  E  +EA+ +R++   + +E  +V+ +R G      LD 
Sbjct  1    MVLDSSVLVQLIFAEPGHRETLEHILEAE-VRVVGAPTLVEVGMVLTSRLGPDNLYLLDE  59

Query  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119
             L R    +V   A  A  A +A+R  GKGRH A LN+GDC SY +AK++G PL + G+D
Sbjct  60   LLMRLEARVVPFEASHAHQALSAFRRCGKGRHPAALNFGDCLSYAVAKVAGMPLAYVGDD  119

Query  120  FQHTDIA  126
            F  TD+A
Sbjct  120  FAQTDLA  126



Lambda     K      H
   0.321    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131523520100




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40