BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0625c
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840026|ref|NP_335063.1| hypothetical protein MT0653 [Mycoba... 472 2e-131
gi|15607765|ref|NP_215139.1| transmembrane protein [Mycobacteriu... 472 2e-131
gi|298524114|ref|ZP_07011523.1| conserved transmembrane protein ... 471 5e-131
gi|340625644|ref|YP_004744096.1| hypothetical protein MCAN_06241... 439 1e-121
gi|323720980|gb|EGB30045.1| membrane protein [Mycobacterium tube... 435 2e-120
gi|307083125|ref|ZP_07492238.1| hypothetical protein TMLG_03375 ... 405 2e-111
gi|240169395|ref|ZP_04748054.1| hypothetical protein MkanA1_0878... 333 2e-89
gi|342858881|ref|ZP_08715535.1| hypothetical protein MCOL_08393 ... 331 5e-89
gi|254776978|ref|ZP_05218494.1| hypothetical protein MaviaA2_202... 330 9e-89
gi|118466458|ref|YP_883676.1| hypothetical protein MAV_4545 [Myc... 327 7e-88
gi|41410188|ref|NP_963024.1| hypothetical protein MAP4090c [Myco... 326 2e-87
gi|336460590|gb|EGO39483.1| hypothetical protein MAPs_39460 [Myc... 324 7e-87
gi|118471337|ref|YP_887160.1| hypothetical protein MSMEG_2840 [M... 320 1e-85
gi|296168387|ref|ZP_06850292.1| conserved hypothetical protein [... 314 6e-84
gi|183983522|ref|YP_001851813.1| hypothetical protein MMAR_3541 ... 311 5e-83
gi|254823501|ref|ZP_05228502.1| hypothetical protein MintA_26463... 310 1e-82
gi|108802188|ref|YP_642385.1| hypothetical protein Mmcs_5227 [My... 299 2e-79
gi|120402193|ref|YP_952022.1| hypothetical protein Mvan_1181 [My... 268 4e-70
gi|315446078|ref|YP_004078957.1| hypothetical protein Mspyr1_457... 265 4e-69
gi|145225727|ref|YP_001136405.1| hypothetical protein Mflv_5151 ... 259 2e-67
gi|307083124|ref|ZP_07492237.1| hypothetical protein TMLG_03374 ... 149 3e-34
gi|31793485|ref|NP_855978.1| hypothetical protein Mb2329 [Mycoba... 130 2e-28
gi|167969842|ref|ZP_02552119.1| putative conserved membrane prot... 123 3e-26
gi|57116962|ref|YP_177663.1| hypothetical protein Rv2306A [Mycob... 115 7e-24
gi|31793484|ref|NP_855977.1| hypothetical protein Mb2328 [Mycoba... 115 7e-24
gi|289443815|ref|ZP_06433559.1| LOW QUALITY PROTEIN: possible co... 113 2e-23
gi|284042519|ref|YP_003392859.1| hypothetical protein Cwoe_1052 ... 100 2e-19
gi|145596738|ref|YP_001161035.1| hypothetical protein Strop_4229... 83.2 3e-14
gi|95931277|ref|ZP_01313995.1| protein of unknown function DUF22... 81.6 1e-13
gi|345125339|gb|EGW55209.1| rhodanese domain protein [endosymbio... 81.3 1e-13
gi|159040160|ref|YP_001539413.1| hypothetical protein Sare_4669 ... 79.7 3e-13
gi|172058798|ref|YP_001815258.1| SNARE associated Golgi protein ... 73.2 4e-11
gi|308404718|ref|ZP_07669441.1| hypothetical protein TMLG_03265 ... 72.8 5e-11
gi|220935128|ref|YP_002514027.1| hypothetical protein Tgr7_1959 ... 72.0 8e-11
gi|114319913|ref|YP_741596.1| hypothetical protein Mlg_0752 [Alk... 70.5 2e-10
gi|183982314|ref|YP_001850605.1| hypothetical protein MMAR_2301 ... 70.5 2e-10
gi|118617164|ref|YP_905496.1| hypothetical protein MUL_1504 [Myc... 70.5 2e-10
gi|311032622|ref|ZP_07710712.1| SNARE associated Golgi protein [... 69.7 4e-10
gi|335040302|ref|ZP_08533433.1| SNARE associated protein [Caldal... 68.2 1e-09
gi|148263625|ref|YP_001230331.1| hypothetical protein Gura_1562 ... 67.8 1e-09
gi|240167873|ref|ZP_04746532.1| hypothetical protein MkanA1_0105... 67.8 1e-09
gi|113475656|ref|YP_721717.1| hypothetical protein Tery_1993 [Tr... 67.4 2e-09
gi|172040707|ref|YP_001800421.1| hypothetical protein cur_1027 [... 67.0 2e-09
gi|213965597|ref|ZP_03393791.1| putative membrane protein [Coryn... 66.6 3e-09
gi|332711776|ref|ZP_08431707.1| hypothetical protein LYNGBM3L_65... 64.7 1e-08
gi|172058364|ref|YP_001814824.1| SNARE associated Golgi protein ... 64.7 1e-08
gi|327537527|gb|EGF24246.1| membrane protein containing SNARE do... 64.3 1e-08
gi|333921810|ref|YP_004495391.1| hypothetical protein AS9A_4157 ... 63.9 2e-08
gi|222054839|ref|YP_002537201.1| hypothetical protein Geob_1742 ... 63.2 4e-08
gi|32476849|ref|NP_869843.1| hypothetical protein RB11207 [Rhodo... 62.8 4e-08
>gi|15840026|ref|NP_335063.1| hypothetical protein MT0653 [Mycobacterium tuberculosis CDC1551]
gi|254230959|ref|ZP_04924286.1| hypothetical protein TBCG_00619 [Mycobacterium tuberculosis C]
gi|13880170|gb|AAK44877.1| hypothetical protein MT0653 [Mycobacterium tuberculosis CDC1551]
gi|124600018|gb|EAY59028.1| hypothetical protein TBCG_00619 [Mycobacterium tuberculosis C]
Length=278
Score = 472 bits (1215), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 246/246 (100%), Positives = 246/246 (100%), Gaps = 0/246 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV
Sbjct 33 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 92
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL
Sbjct 93 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 152
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA
Sbjct 153 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 212
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD 240
FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD
Sbjct 213 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD 272
Query 241 REVGAR 246
REVGAR
Sbjct 273 REVGAR 278
>gi|15607765|ref|NP_215139.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|31791807|ref|NP_854300.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121636544|ref|YP_976767.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
67 more sequence titles
Length=246
Score = 472 bits (1215), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 246/246 (100%), Positives = 246/246 (100%), Gaps = 0/246 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV
Sbjct 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL
Sbjct 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA
Sbjct 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD 240
FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD
Sbjct 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD 240
Query 241 REVGAR 246
REVGAR
Sbjct 241 REVGAR 246
>gi|298524114|ref|ZP_07011523.1| conserved transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
gi|298493908|gb|EFI29202.1| conserved transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
Length=246
Score = 471 bits (1211), Expect = 5e-131, Method: Compositional matrix adjust.
Identities = 245/246 (99%), Positives = 245/246 (99%), Gaps = 0/246 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPA PLTYV
Sbjct 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAVPLTYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL
Sbjct 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA
Sbjct 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD 240
FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD
Sbjct 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD 240
Query 241 REVGAR 246
REVGAR
Sbjct 241 REVGAR 246
>gi|340625644|ref|YP_004744096.1| hypothetical protein MCAN_06241 [Mycobacterium canettii CIPT
140010059]
gi|340003834|emb|CCC42964.1| putative conserved transmembrane protein [Mycobacterium canettii
CIPT 140010059]
Length=246
Score = 439 bits (1130), Expect = 1e-121, Method: Compositional matrix adjust.
Identities = 241/246 (98%), Positives = 242/246 (99%), Gaps = 0/246 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPL YV
Sbjct 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLAYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL
Sbjct 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
GG RADR DALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA
Sbjct 121 GGGRADRADALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPD 240
F YTALGAAIGDRSPLLASCAIAVWCVTAI+GAFAARHGYRQWRAHARGDGADGGVEDPD
Sbjct 181 FVYTALGAAIGDRSPLLASCAIAVWCVTAIVGAFAARHGYRQWRAHARGDGADGGVEDPD 240
Query 241 REVGAR 246
REVGAR
Sbjct 241 REVGAR 246
>gi|323720980|gb|EGB30045.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|339293662|gb|AEJ45773.1| hypothetical protein CCDC5079_0583 [Mycobacterium tuberculosis
CCDC5079]
gi|339297303|gb|AEJ49413.1| hypothetical protein CCDC5180_0576 [Mycobacterium tuberculosis
CCDC5180]
Length=230
Score = 435 bits (1119), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 229/230 (99%), Positives = 230/230 (100%), Gaps = 0/230 (0%)
Query 17 VRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPIL 76
+RLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPIL
Sbjct 1 MRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPIL 60
Query 77 AASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERADRTDALIERCG 136
AASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERADRTDALIERCG
Sbjct 61 AASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERADRTDALIERCG 120
Query 137 LWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPL 196
LWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPL
Sbjct 121 LWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPL 180
Query 197 LASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPDREVGAR 246
LASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPDREVGAR
Sbjct 181 LASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPDREVGAR 230
>gi|307083125|ref|ZP_07492238.1| hypothetical protein TMLG_03375 [Mycobacterium tuberculosis SUMu012]
gi|308367161|gb|EFP56012.1| hypothetical protein TMLG_03375 [Mycobacterium tuberculosis SUMu012]
Length=214
Score = 405 bits (1042), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV
Sbjct 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL
Sbjct 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA
Sbjct 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAF 214
FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAF
Sbjct 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAF 214
>gi|240169395|ref|ZP_04748054.1| hypothetical protein MkanA1_08783 [Mycobacterium kansasii ATCC
12478]
Length=235
Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 177/227 (78%), Positives = 190/227 (84%), Gaps = 0/227 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
M + S TSRR HIVRLVVFAGFL+G++YLVA V+DV +R AVSATGPAAPLTYV
Sbjct 1 MVDNPGSPLTSRRHHIVRLVVFAGFLLGLWYLVAVARVVDVEVMRRAVSATGPAAPLTYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
V SAVLGALFVPGP+LAA SGLLFGP+ G+FVTLGATVGTA+VAS VGRRAGR SAR LL
Sbjct 61 VASAVLGALFVPGPVLAAGSGLLFGPVEGIFVTLGATVGTAIVASFVGRRAGRDSARTLL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
G RADR D LIER GLWAVVGQRFVPGISDA ASYAFG FGVPLWQMAVGAFIGS PRA
Sbjct 121 GASRADRIDVLIERRGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAVGAFIGSMPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHA 227
F YTALGA+IGDRS LA AIAVWCVTA++G FAAR GYR WR A
Sbjct 181 FVYTALGASIGDRSSPLAYAAIAVWCVTAVVGVFAARRGYRSWRGRA 227
>gi|342858881|ref|ZP_08715535.1| hypothetical protein MCOL_08393 [Mycobacterium colombiense CECT
3035]
gi|342133122|gb|EGT86325.1| hypothetical protein MCOL_08393 [Mycobacterium colombiense CECT
3035]
Length=240
Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 178/235 (76%), Positives = 194/235 (83%), Gaps = 1/235 (0%)
Query 5 NDSAPT-SRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVS 63
N + PT SRR HIVRL VFA FL +FYLVA VI++ +R VSATGPAAPLTYVVVS
Sbjct 4 NHAPPTASRRAHIVRLAVFAAFLGAVFYLVAVARVINIDEIRAIVSATGPAAPLTYVVVS 63
Query 64 AVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGE 123
AV+GALFVPG ILAA SGLLFGPL+GVFVTLGATVGTA+VAS VGRRAGR ARALLG
Sbjct 64 AVVGALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTAIVASFVGRRAGREGARALLGAM 123
Query 124 RADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAY 183
RADR DALI R GLWAVVGQRFVPGISDA ASYAFG FGVP+WQMAVGAFIGSAPRAFAY
Sbjct 124 RADRMDALIGRGGLWAVVGQRFVPGISDALASYAFGAFGVPVWQMAVGAFIGSAPRAFAY 183
Query 184 TALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVED 238
TALGA+IG+RS LA AIAVWC++AI GAFAA GYR+WR HA+ D +G E
Sbjct 184 TALGASIGNRSSPLAYAAIAVWCISAIAGAFAAHRGYRKWRGHAKDDEGNGSPES 238
>gi|254776978|ref|ZP_05218494.1| hypothetical protein MaviaA2_20236 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=233
Score = 330 bits (847), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 180/233 (78%), Positives = 192/233 (83%), Gaps = 1/233 (0%)
Query 1 MSTHNDS-APTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTY 59
M + S AP SRR HI+RL VFAGFL +FYLVA VIDV +R VSATGPAAPLTY
Sbjct 1 MDDQDASDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGEIRAVVSATGPAAPLTY 60
Query 60 VVVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARAL 119
VV SA+ GALFVPG ILAA SGLLFGPL+GVFVTLGATVGTA AS VGRRAGR SARAL
Sbjct 61 VVASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTATAASFVGRRAGRDSARAL 120
Query 120 LGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPR 179
LG RADR DALI R GLWAVVGQRFVPGISDA ASYAFG FGVPLWQMAVGAFIGSAPR
Sbjct 121 LGPARADRVDALIGRGGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAVGAFIGSAPR 180
Query 180 AFAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGA 232
AFAYTALGA+IG+RS LLA A+AVWCV+AI+GAFAA GYRQWR R +GA
Sbjct 181 AFAYTALGASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRQWRDRPRDEGA 233
>gi|118466458|ref|YP_883676.1| hypothetical protein MAV_4545 [Mycobacterium avium 104]
gi|118167745|gb|ABK68642.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=233
Score = 327 bits (839), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 175/229 (77%), Positives = 188/229 (83%), Gaps = 0/229 (0%)
Query 2 STHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVV 61
+ AP SRR HI+RL VFAGFL +FYLVA VIDV +R VSATGPAAPLTYVV
Sbjct 3 NQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGEIRAVVSATGPAAPLTYVV 62
Query 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLG 121
SA+ GALFVPG ILAA SGLLFGPL+GVFVTLGATVGTA AS VGRRAGR SARALLG
Sbjct 63 ASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTATAASFVGRRAGRDSARALLG 122
Query 122 GERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAF 181
RADR DALI R GLWAVVGQRFVPGISDA ASYAFG FGVPLWQMAVGAFIGSAPRAF
Sbjct 123 PARADRVDALIGRGGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAVGAFIGSAPRAF 182
Query 182 AYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGD 230
AYTALGA+IG+RS LLA A+AVWCV+AI+GAFAA GYRQWR + +
Sbjct 183 AYTALGASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRQWRGRPKDE 231
>gi|41410188|ref|NP_963024.1| hypothetical protein MAP4090c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399022|gb|AAS06640.1| hypothetical protein MAP_4090c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=233
Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/224 (79%), Positives = 187/224 (84%), Gaps = 0/224 (0%)
Query 7 SAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVL 66
AP SRR HI+RL VFAGFL +FYLVA VIDV A+R VSATGPAAPLTYVV SA+
Sbjct 8 DAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIRAVVSATGPAAPLTYVVASALA 67
Query 67 GALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERAD 126
GALFVPG ILAA SGLLFGPL+GVFVTLGATVGTA AS VGRRAGR SARALLG RAD
Sbjct 68 GALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTATTASFVGRRAGRDSARALLGPARAD 127
Query 127 RTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTAL 186
R DALI R GLWAVVGQRFVPGISDA ASYAFG FGVPLWQMAVGAFIGSAPRAFAYTAL
Sbjct 128 RVDALIGRGGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAVGAFIGSAPRAFAYTAL 187
Query 187 GAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGD 230
GA+IG+RS LLA A+AVWCV+AI+GAFAA GYR WR + +
Sbjct 188 GASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRHWRGRPKDE 231
>gi|336460590|gb|EGO39483.1| hypothetical protein MAPs_39460 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=233
Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 174/224 (78%), Positives = 186/224 (84%), Gaps = 0/224 (0%)
Query 7 SAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVL 66
AP SRR HI+RL VFAGFL +FYLVA VIDV A+R VSATGPAAPLTY V SA+
Sbjct 8 DAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIRAVVSATGPAAPLTYAVASALA 67
Query 67 GALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERAD 126
GALFVPG ILAA SGLLFGPL+GVFVTLGATVGTA AS VGRRAGR SARALLG RAD
Sbjct 68 GALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTATTASFVGRRAGRDSARALLGPARAD 127
Query 127 RTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTAL 186
R DALI R GLWAVVGQRFVPGISDA ASYAFG FGVPLWQMAVGAFIGSAPRAFAYTAL
Sbjct 128 RVDALIGRGGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAVGAFIGSAPRAFAYTAL 187
Query 187 GAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGD 230
GA+IG+RS LLA A+AVWCV+AI+GAFAA GYR WR + +
Sbjct 188 GASIGNRSSLLAYAAVAVWCVSAIVGAFAAHRGYRHWRGRPKDE 231
>gi|118471337|ref|YP_887160.1| hypothetical protein MSMEG_2840 [Mycobacterium smegmatis str.
MC2 155]
gi|118172624|gb|ABK73520.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=232
Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/224 (75%), Positives = 184/224 (83%), Gaps = 0/224 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
M+ +D T R RHI+RL +FA FL+G+FYLVA V+++ +RGAVSATGP APL YV
Sbjct 1 MTDTDDPPATGRTRHIIRLALFAAFLLGLFYLVAVARVVEIGDIRGAVSATGPIAPLVYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VVSA LGALFVPGP+LA +SG LFGP++G FVTLGATVGTA VASL+GRRAGR SAR +L
Sbjct 61 VVSACLGALFVPGPLLAGTSGFLFGPVLGTFVTLGATVGTATVASLIGRRAGRESARGVL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
G ERADR D IER GLWAVVGQRFVPGISDA ASYAFG FGVPLWQM VG+FIGSAPRA
Sbjct 121 GAERADRLDRQIERGGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMVVGSFIGSAPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWR 224
F YTALGA+IGD S LA AIAVWCVTAIIGAFAA GYR WR
Sbjct 181 FVYTALGASIGDLSAPLAYTAIAVWCVTAIIGAFAAHRGYRSWR 224
>gi|296168387|ref|ZP_06850292.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896734|gb|EFG76368.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=248
Score = 314 bits (805), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 181/237 (77%), Positives = 196/237 (83%), Gaps = 7/237 (2%)
Query 6 DSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAV 65
+S PTSRR H+ RL VF FL+ +FYLVA VIDV VR VSATGPAAP+TYV VSAV
Sbjct 17 ESEPTSRRTHVARLAVFVVFLLVLFYLVAVARVIDVDEVRRVVSATGPAAPVTYVAVSAV 76
Query 66 LGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERA 125
LGALFVPG +LAA+SGLLFGP++GVFVTLGATVGTAVVASLVGRRAGR SARALLG RA
Sbjct 77 LGALFVPGAVLAAASGLLFGPVLGVFVTLGATVGTAVVASLVGRRAGRDSARALLGRTRA 136
Query 126 DRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTA 185
DR DALIER GLWAVVGQRFVPGISDA ASYAFG FGVPLWQMA+GAF+GS PRAF YTA
Sbjct 137 DRIDALIERRGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAIGAFVGSVPRAFVYTA 196
Query 186 LGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPDRE 242
LGA+IG+RS LA AIAVWCVTAI+GA AAR GYR WRAHAR EDP+ E
Sbjct 197 LGASIGNRSSPLAYAAIAVWCVTAIVGALAARRGYRHWRAHARR-------EDPEAE 246
>gi|183983522|ref|YP_001851813.1| hypothetical protein MMAR_3541 [Mycobacterium marinum M]
gi|183176848|gb|ACC41958.1| conserved membrane protein [Mycobacterium marinum M]
Length=239
Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 163/227 (72%), Positives = 184/227 (82%), Gaps = 2/227 (0%)
Query 3 THNDSAP--TSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
T D AP SR RH+VRL +FAGFL+GMFYLVA VID+A +R A++ATGP APL YV
Sbjct 4 TATDPAPPSASRGRHLVRLALFAGFLLGMFYLVAVARVIDIAGIRSAITATGPLAPLAYV 63
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
V+S VLGA+FVPGPILAA SG+LFGP++G FVTLGATVGTAVVASL+GRRAGR SAR LL
Sbjct 64 VMSTVLGAVFVPGPILAAGSGVLFGPILGTFVTLGATVGTAVVASLLGRRAGRDSARVLL 123
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
G +RA+R DA IER GLWAVVGQRF+PGISDA ASY FG FGVPLWQM +G+ IGSAPRA
Sbjct 124 GTDRANRLDARIERQGLWAVVGQRFIPGISDALASYTFGAFGVPLWQMILGSLIGSAPRA 183
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHA 227
F YTALGA I + S LA AIAVWCVTAI+GA AR YR+WR A
Sbjct 184 FVYTALGATIMNLSSWLAYAAIAVWCVTAIVGAVTARREYRKWRERA 230
>gi|254823501|ref|ZP_05228502.1| hypothetical protein MintA_26463 [Mycobacterium intracellulare
ATCC 13950]
Length=251
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 179/236 (76%), Positives = 191/236 (81%), Gaps = 1/236 (0%)
Query 7 SAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVL 66
S P SRR +VRL VFA FL FYLVA VID+ +R VSATGPAAPLTYVVVSAV
Sbjct 15 SQPVSRRGPVVRLAVFAAFLAVAFYLVAVAHVIDIEEIRRVVSATGPAAPLTYVVVSAVA 74
Query 67 GALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERAD 126
GALFVPG ILAA SGLLFGPL+GVFVTLGATVGTA+VAS VGRRAGR SARALLG +RAD
Sbjct 75 GALFVPGSILAAGSGLLFGPLLGVFVTLGATVGTAIVASFVGRRAGRDSARALLGAQRAD 134
Query 127 RTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTAL 186
R DALI R GLWAVVGQRFVPGISDA ASYAFG FGVPLWQMA GAFIGS PRAF YTAL
Sbjct 135 RFDALIGRRGLWAVVGQRFVPGISDALASYAFGAFGVPLWQMAAGAFIGSVPRAFVYTAL 194
Query 187 GAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGADGGVEDPDRE 242
GA+IG+RS LA AIAVWCV+AI+GAFAA GYR+WR HA G AD G +P E
Sbjct 195 GASIGNRSSPLAYAAIAVWCVSAIVGAFAAHRGYRRWRTHA-GRDADTGSPEPGSE 249
>gi|108802188|ref|YP_642385.1| hypothetical protein Mmcs_5227 [Mycobacterium sp. MCS]
gi|119871341|ref|YP_941293.1| hypothetical protein Mkms_5315 [Mycobacterium sp. KMS]
gi|126438170|ref|YP_001073861.1| hypothetical protein Mjls_5607 [Mycobacterium sp. JLS]
gi|108772607|gb|ABG11329.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119697430|gb|ABL94503.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126237970|gb|ABO01371.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=220
Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/208 (78%), Positives = 174/208 (84%), Gaps = 0/208 (0%)
Query 10 TSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGAL 69
TSRRRHI RL VFA + G+FYLVA VI+V AVR AV+ATGP APLTYVVVSA LGAL
Sbjct 2 TSRRRHIARLAVFAALVFGLFYLVAVERVIEVDAVRDAVAATGPVAPLTYVVVSATLGAL 61
Query 70 FVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERADRTD 129
FVPGP+LA SGLLFGP++G FVTLGATVGTAVVASLVGRRAGR SARALLG ERA+ D
Sbjct 62 FVPGPLLAGGSGLLFGPVLGTFVTLGATVGTAVVASLVGRRAGRDSARALLGPERAELLD 121
Query 130 ALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAA 189
IER GLWAVVGQRF+PGISDA ASYAFG FGVPLWQMAVGAFIGS PRAF YTALGA+
Sbjct 122 TQIERRGLWAVVGQRFIPGISDALASYAFGAFGVPLWQMAVGAFIGSVPRAFVYTALGAS 181
Query 190 IGDRSPLLASCAIAVWCVTAIIGAFAAR 217
IGD S LA AI +W VTA++GAFAA
Sbjct 182 IGDLSSPLAYTAIGIWVVTAVVGAFAAH 209
>gi|120402193|ref|YP_952022.1| hypothetical protein Mvan_1181 [Mycobacterium vanbaalenii PYR-1]
gi|119955011|gb|ABM12016.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=229
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/226 (65%), Positives = 175/226 (78%), Gaps = 0/226 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
M + TSRRRHI RL +F L ++YL A VIDVA VRG + +TGPAAPLTYV
Sbjct 3 MEDTEGTPETSRRRHITRLALFGAVLAVLYYLTAVERVIDVAQVRGLIESTGPAAPLTYV 62
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VSAVLGAL VPGP+LAA SG LFGPLVG FVTLGAT+G+AV+++ GRRAGR SAR LL
Sbjct 63 AVSAVLGALLVPGPLLAAGSGFLFGPLVGTFVTLGATMGSAVISAFAGRRAGRDSARGLL 122
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
G +RA+R D LI+R GLWAVVGQR++PGI+DA ASY FG FGVPLWQMA GA IGSAP+A
Sbjct 123 GADRAERIDGLIQRGGLWAVVGQRWIPGINDALASYTFGAFGVPLWQMAAGALIGSAPKA 182
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAH 226
F YTA+G+ +G+ S L + A+ VWCVTA++GAFAA G+R WR+
Sbjct 183 FVYTAVGSTLGEFSAPLLAAAVVVWCVTAVVGAFAAHRGWRAWRSR 228
>gi|315446078|ref|YP_004078957.1| hypothetical protein Mspyr1_45710 [Mycobacterium sp. Spyr1]
gi|315264381|gb|ADU01123.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=227
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/226 (66%), Positives = 174/226 (77%), Gaps = 0/226 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
M+ D+ TS+RR + RL + L +FYL A VIDV AVR + +TGP APLTYV
Sbjct 1 MTDPTDAPETSKRRALARLALVVAVLAVLFYLTAIARVIDVEAVRDLIESTGPLAPLTYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VSAVLGAL VPGP+LAA SG LFGP+VG VTLGATVG A++++ VGRRAGR SAR LL
Sbjct 61 GVSAVLGALLVPGPLLAAGSGFLFGPVVGTVVTLGATVGNALISAYVGRRAGRQSARTLL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
G +RA++ D LIER GLWAVVGQRFVPGISD+ ASYAFG FGVPLWQMA GAFIGS PRA
Sbjct 121 GTQRAEQVDRLIERGGLWAVVGQRFVPGISDSLASYAFGAFGVPLWQMAAGAFIGSMPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAH 226
F YT +G++IG+ S LA A AVWCVTA+IGAFAA G+R+WRA
Sbjct 181 FVYTVVGSSIGEFSAPLAFAAAAVWCVTAVIGAFAAHRGWRRWRAR 226
>gi|145225727|ref|YP_001136405.1| hypothetical protein Mflv_5151 [Mycobacterium gilvum PYR-GCK]
gi|145218213|gb|ABP47617.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=227
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/226 (66%), Positives = 173/226 (77%), Gaps = 0/226 (0%)
Query 1 MSTHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYV 60
M+ D+ TS+RR +VRL + L +FYL A VIDV AVR + +TGP APLTYV
Sbjct 1 MTDPTDAPETSKRRALVRLALVVAVLAVLFYLTAIARVIDVEAVRDLIESTGPLAPLTYV 60
Query 61 VVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALL 120
VSAVLGAL VPGP+LAA SG LFGP+VG VTLGATV A++++ +GRRAGR SAR LL
Sbjct 61 GVSAVLGALLVPGPLLAAGSGFLFGPVVGTVVTLGATVVNALISAYLGRRAGRQSARTLL 120
Query 121 GGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRA 180
G RA++ D LIER GLWAVVGQRFVPGISD+ ASYAFG FGVPLWQMA GAFIGS PRA
Sbjct 121 GASRAEQVDRLIERGGLWAVVGQRFVPGISDSLASYAFGAFGVPLWQMAAGAFIGSMPRA 180
Query 181 FAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAH 226
F YT +G+++G+ S LA A AVWCVTA+IGAFAA G+R+WRA
Sbjct 181 FVYTVVGSSVGEFSAPLAFAAAAVWCVTAVIGAFAAHRGWRRWRAR 226
>gi|307083124|ref|ZP_07492237.1| hypothetical protein TMLG_03374 [Mycobacterium tuberculosis SUMu012]
gi|308367169|gb|EFP56020.1| hypothetical protein TMLG_03374 [Mycobacterium tuberculosis SUMu012]
Length=78
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)
Query 173 FIGSAPRAFAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGA 232
FIGSAPRAFAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGA
Sbjct 5 FIGSAPRAFAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHARGDGA 64
Query 233 DGGVEDPDREVGAR 246
DGGVEDPDREVGAR
Sbjct 65 DGGVEDPDREVGAR 78
>gi|31793485|ref|NP_855978.1| hypothetical protein Mb2329 [Mycobacterium bovis AF2122/97]
gi|57116963|ref|YP_177664.1| hypothetical protein Rv2306B [Mycobacterium tuberculosis H37Rv]
gi|121638188|ref|YP_978412.1| hypothetical protein BCG_2323 [Mycobacterium bovis BCG str. Pasteur
1173P2]
28 more sequence titles
Length=144
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/84 (78%), Positives = 69/84 (83%), Gaps = 0/84 (0%)
Query 137 LWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPL 196
+WAVVGQRFVPGISDA ASY FG FGVPLWQM VG+FIGSAPR F YTALGA+I + S
Sbjct 1 MWAVVGQRFVPGISDALASYTFGAFGVPLWQMVVGSFIGSAPRVFVYTALGASITNLSSP 60
Query 197 LASCAIAVWCVTAIIGAFAARHGY 220
L AIAVWCVTAIIGAFAAR Y
Sbjct 61 LVYSAIAVWCVTAIIGAFAARRWY 84
>gi|167969842|ref|ZP_02552119.1| putative conserved membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|254551347|ref|ZP_05141794.1| hypothetical protein Mtube_12940 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289745578|ref|ZP_06504956.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289686106|gb|EFD53594.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=141
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/81 (77%), Positives = 66/81 (82%), Gaps = 0/81 (0%)
Query 140 VVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPLLAS 199
+VGQRFVPGISDA ASY FG FGVPLWQM VG+FIGSAPR F YTALGA+I + S L
Sbjct 1 MVGQRFVPGISDALASYTFGAFGVPLWQMVVGSFIGSAPRVFVYTALGASITNLSSPLVY 60
Query 200 CAIAVWCVTAIIGAFAARHGY 220
AIAVWCVTAIIGAFAAR Y
Sbjct 61 SAIAVWCVTAIIGAFAARRWY 81
>gi|57116962|ref|YP_177663.1| hypothetical protein Rv2306A [Mycobacterium tuberculosis H37Rv]
gi|167969841|ref|ZP_02552118.1| possible conserved membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|253798628|ref|YP_003031629.1| hypothetical protein TBMG_04030 [Mycobacterium tuberculosis KZN
1435]
15 more sequence titles
Length=197
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/95 (68%), Positives = 72/95 (76%), Gaps = 1/95 (1%)
Query 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGA-VSATGPAAPLTYVV 61
T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR A V ATGP APL YVV
Sbjct 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVV 61
Query 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96
VSA LGALFVPGPILAA SG+LFGPL+ FVTL A
Sbjct 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96
>gi|31793484|ref|NP_855977.1| hypothetical protein Mb2328 [Mycobacterium bovis AF2122/97]
gi|121638187|ref|YP_978411.1| hypothetical protein BCG_2322 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990681|ref|YP_002645368.1| hypothetical protein JTY_2316 [Mycobacterium bovis BCG str. Tokyo
172]
12 more sequence titles
Length=197
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/95 (68%), Positives = 72/95 (76%), Gaps = 1/95 (1%)
Query 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVS-ATGPAAPLTYVV 61
T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR AV ATGP APL YVV
Sbjct 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAVVVATGPIAPLAYVV 61
Query 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96
VSA LGALFVPGPILAA SG+LFGPL+ FVTL A
Sbjct 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96
>gi|289443815|ref|ZP_06433559.1| LOW QUALITY PROTEIN: possible conserved membrane protein [Mycobacterium
tuberculosis T46]
gi|289416734|gb|EFD13974.1| LOW QUALITY PROTEIN: possible conserved membrane protein [Mycobacterium
tuberculosis T46]
Length=113
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/95 (68%), Positives = 72/95 (76%), Gaps = 1/95 (1%)
Query 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVS-ATGPAAPLTYVV 61
T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR AV ATGP APL YVV
Sbjct 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAVVVATGPIAPLAYVV 61
Query 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96
VSA LGALFVPGPILAA SG+LFGPL+ FVTL A
Sbjct 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96
>gi|284042519|ref|YP_003392859.1| hypothetical protein Cwoe_1052 [Conexibacter woesei DSM 14684]
gi|283946740|gb|ADB49484.1| SNARE associated Golgi protein-related protein [Conexibacter
woesei DSM 14684]
Length=243
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/219 (39%), Positives = 109/219 (50%), Gaps = 4/219 (1%)
Query 12 RRRHIV---RLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGA 68
RR +V RL+ F+V +F + A+ + VR AV GP APL +VVVSA L
Sbjct 26 RRAQLVALARLLGLGAFVVALFVVAASVFGLSSEGVRDAVDGVGPLAPLVFVVVSAGLTV 85
Query 69 LFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERADRT 128
VPGP+LA +SGLLFG +G + A A A+ + RR G ASA L G R
Sbjct 86 ACVPGPLLAGASGLLFGTALGTPTAIVAATLGATAAAFISRRFG-ASALDDLSGRRITAL 144
Query 129 DALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGA 188
I G AV+ R +P + + +YA G VPL A+ IG APRAFAY ALG
Sbjct 145 QDWIAARGFLAVLYARILPAVPYSLVNYAAGLTRVPLAVFALATAIGCAPRAFAYVALGG 204
Query 189 AIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQWRAHA 227
++ D A A +V A++G A R R A
Sbjct 205 SLDDLGSPEAIVAFSVLVAMALVGLLFAARDVRTARRRA 243
>gi|145596738|ref|YP_001161035.1| hypothetical protein Strop_4229 [Salinispora tropica CNB-440]
gi|145306075|gb|ABP56657.1| hypothetical protein Strop_4229 [Salinispora tropica CNB-440]
Length=239
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/188 (40%), Positives = 96/188 (52%), Gaps = 6/188 (3%)
Query 10 TSRRRHIV-----RLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSA 64
TSR IV RL L G L+A DV +R V+ATG APL Y+ A
Sbjct 11 TSRLVRIVGSPWPRLAFLVVLLTGAATLLATQGTPDVETLRDRVAATGAWAPLLYIAGYA 70
Query 65 VLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGER 124
+ L VPG +L A++G LFG + G V L AV + L+GR GR + L+GG R
Sbjct 71 LGTVLLVPGVLLTAAAGALFGVVGGSVVVLVGATTGAVASFLLGRLLGRPAVERLVGG-R 129
Query 125 ADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYT 184
R D + R GL AV+G R VP + A +Y G V L A+G+ IG P AYT
Sbjct 130 LYRLDQFLARRGLIAVIGLRLVPLVPFALLNYGSGVTAVRLRDYALGSAIGMTPGIVAYT 189
Query 185 ALGAAIGD 192
A+G ++ D
Sbjct 190 AVGGSLTD 197
>gi|95931277|ref|ZP_01313995.1| protein of unknown function DUF224, cysteine-rich region [Desulfuromonas
acetoxidans DSM 684]
gi|95132671|gb|EAT14352.1| protein of unknown function DUF224, cysteine-rich region [Desulfuromonas
acetoxidans DSM 684]
Length=602
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/191 (32%), Positives = 91/191 (48%), Gaps = 3/191 (1%)
Query 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVV 62
T + SR ++ L + +V + + A D + +R ++ TG APL ++V+
Sbjct 376 TTTEQKKKSRLGQVIVLALLIAAIVTL-KMTGAADYLQPEKLRDWIAGTGFWAPLIFMVL 434
Query 63 SAVLGALFVPGPILAASSGLLFGPLVGVFVTL-GATVGTAVVASLVGRRAGRASARALLG 121
ALF+PG L G+LFGP GV T+ GAT G A VA LV R GR R+ L
Sbjct 435 YTAAPALFLPGLPLTILGGILFGPFWGVVYTITGATAG-ACVAFLVARYLGRDWIRSKLT 493
Query 122 GERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAF 181
R + D + R G V R +P +YAFG + A+ +FI P
Sbjct 494 APRWQKLDEDVARNGWKVVAFTRLIPLFPFNLLNYAFGLTNIRFSHYALTSFICMLPATI 553
Query 182 AYTALGAAIGD 192
A+ +L +++G+
Sbjct 554 AFISLSSSLGE 564
>gi|345125339|gb|EGW55209.1| rhodanese domain protein [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length=333
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/178 (34%), Positives = 86/178 (49%), Gaps = 3/178 (1%)
Query 13 RRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVP 72
R +R ++FA + + D ID A++ V GPAAPL ++V+ A+ LF+P
Sbjct 2 RSKALRWLLFALLASAISLTILYRDHIDAGALQQWVEQAGPAAPLLFMVIYAIGTVLFLP 61
Query 73 GPILAASSGLLFGPLVGVFVTL-GATVGTAVVASLVGRRAGRASARALLGGERADRTDAL 131
G ++ + G LFGP++G F L GAT+G AV+A L+ R GG R
Sbjct 62 GSVMTLAGGALFGPVLGTFYNLTGATIG-AVLAFLIARFFTSNWVEQKTGGH-LKRLKEG 119
Query 132 IERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAA 189
+E G V R VP +YA G +PL + ++ P A AYT LG A
Sbjct 120 VENEGWRFVAFVRLVPLFPFNLLNYALGLTRIPLLHYLIATYLCMLPGAIAYTYLGYA 177
>gi|159040160|ref|YP_001539413.1| hypothetical protein Sare_4669 [Salinispora arenicola CNS-205]
gi|157918995|gb|ABW00423.1| SNARE associated Golgi protein [Salinispora arenicola CNS-205]
Length=240
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/154 (44%), Positives = 88/154 (58%), Gaps = 3/154 (1%)
Query 40 DVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLF-GPLVGVFVTLGATV 98
DV +R V+ATGP APL + V A+ L VPG +L A++G LF V V +GATV
Sbjct 46 DVDTLRDRVAATGPWAPLLFTVGYALGTVLLVPGVLLTAAAGALFGVVGGSVVVLVGATV 105
Query 99 GTAVVASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAF 158
G AV + L+GR GR + L+GG R R D + R GL AV+G R VP + A +Y
Sbjct 106 G-AVASFLLGRLLGRPAVERLVGG-RLQRLDRFLARRGLVAVIGLRLVPLVPFALLNYGS 163
Query 159 GTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIGD 192
G V L A+G+ IG P AYTA+G ++ D
Sbjct 164 GVTAVRLRDYALGSAIGMIPGIVAYTAVGGSLTD 197
>gi|172058798|ref|YP_001815258.1| SNARE associated Golgi protein [Exiguobacterium sibiricum 255-15]
gi|171991319|gb|ACB62241.1| SNARE associated Golgi protein [Exiguobacterium sibiricum 255-15]
Length=217
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/185 (29%), Positives = 89/185 (49%), Gaps = 6/185 (3%)
Query 44 VRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVGVFVT-LGATVGTAV 102
++ + + G AP+ Y+++ + +F P +L+ + GL FG +G T +GAT+G AV
Sbjct 35 IKDWILSFGMWAPILYILLYTIRPLIFFPASVLSITGGLAFGACLGTLYTVIGATLG-AV 93
Query 103 VASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFG 162
VA LV ++ G + + + +E+ G V+ R +P + SYA G
Sbjct 94 VAFLVAQKLGNGLIKKKEQAGKIHQIQQQLEKNGFIYVLIFRLLPIFNFDLISYAAGLSK 153
Query 163 VPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQ 222
V L + IG P FAY LG++I + P L AI V+ V I+ + ++
Sbjct 154 VRLLSFFLATLIGIIPGTFAYNFLGSSIVSKDPQLIIGAIIVFLVLTIVPWYIQ----KR 209
Query 223 WRAHA 227
W+A
Sbjct 210 WKAKK 214
>gi|308404718|ref|ZP_07669441.1| hypothetical protein TMLG_03265 [Mycobacterium tuberculosis SUMu012]
gi|308365423|gb|EFP54274.1| hypothetical protein TMLG_03265 [Mycobacterium tuberculosis SUMu012]
Length=113
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/53 (72%), Positives = 41/53 (78%), Gaps = 0/53 (0%)
Query 168 MAVGAFIGSAPRAFAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARHGY 220
M VG+FIGSAPR F YTALGA+I + S L AIAVWCVTAIIGAFAAR Y
Sbjct 1 MVVGSFIGSAPRVFVYTALGASITNLSSPLVYSAIAVWCVTAIIGAFAARRWY 53
>gi|220935128|ref|YP_002514027.1| hypothetical protein Tgr7_1959 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996438|gb|ACL73040.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length=320
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/172 (35%), Positives = 84/172 (49%), Gaps = 7/172 (4%)
Query 19 LVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAA 78
L+V AG ++ + Y D V A+ ++ G APL ++ + A+ F+PG +L
Sbjct 14 LLVLAGIVLAVMY----RDAFTVEALETRMAELGFTAPLIFMGLYALAAVFFLPGSVLTL 69
Query 79 SSGLLFGPLVG-VFVTLGATVGTAVVASLVGRRAGRASARALLGGERADRTDALIERCGL 137
+ G LFGP+ G V+ +GATVG A +A LV R + GG R +E+ G
Sbjct 70 AGGALFGPVWGTVYSLVGATVG-ATLAFLVSRYLAADWTQRRAGG-RLSMLVRGVEQEGW 127
Query 138 WAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAA 189
V R VP +YA G +P W + F+ AP AFAYT LG A
Sbjct 128 RFVAFTRLVPLFPYNLLNYALGLTRIPFWHYVLATFVCMAPGAFAYTWLGYA 179
>gi|114319913|ref|YP_741596.1| hypothetical protein Mlg_0752 [Alkalilimnicola ehrlichii MLHE-1]
gi|114226307|gb|ABI56106.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
Length=229
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/178 (36%), Positives = 85/178 (48%), Gaps = 3/178 (1%)
Query 13 RRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVP 72
RR I + ++ G + + A D + V +R + GP APL ++ A+ FVP
Sbjct 3 RRLIRKALIVLGLTLVIALAWALRDHLQVDVLRATLDDLGPWAPLAFMGAYAIAAVGFVP 62
Query 73 GPILAASSGLLFGPLVGVFVTL-GATVGTAVVASLVGRRAGRASARALLGGERADRTDAL 131
G + + G+LFGPL G +L GATVG A +A LV R A A G + R A
Sbjct 63 GSVFTLAGGVLFGPLWGTLYSLIGATVG-AGLAFLVARHLA-ADWVARKAGGQLGRVIAG 120
Query 132 IERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAA 189
+ER G V R VP +YA G +PL + F+ AP A AYT LG A
Sbjct 121 VEREGWRFVALTRLVPLFPFNLLNYALGLTRIPLAHYLIATFVCMAPGALAYTWLGYA 178
>gi|183982314|ref|YP_001850605.1| hypothetical protein MMAR_2301 [Mycobacterium marinum M]
gi|183175640|gb|ACC40750.1| conserved membrane protein [Mycobacterium marinum M]
Length=257
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/202 (31%), Positives = 93/202 (47%), Gaps = 8/202 (3%)
Query 44 VRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVV 103
+R S+ GP PL +++V V+ P + GLLFGP++G+ + + A+ +AV+
Sbjct 57 MRDWASSVGPWLPLVFLLVHIVVTVPPFPRTAFTVAGGLLFGPVLGIVIAVTASTASAVI 116
Query 104 ASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGV 163
A L+ R AG R + G DR D + G A++ R +P + A +Y G V
Sbjct 117 ALLLVRAAGWRLNRLVPHGA-VDRLDERLRERGWLAILSLRLIPAVPFAALNYGAGASAV 175
Query 164 PLWQMAVGAFIGSAPRAFAYTALGAAI-GDRSPLLASCAIAVWCVTAIIGAFAARHGYRQ 222
+ + G P A LG+A+ GD SPLL ++ TA +G RQ
Sbjct 176 RVVPYTLSTLAGLLPGTVAVVILGSALAGDGSPLLVLVSVC----TAALGMSGLVFEVRQ 231
Query 223 WRAHARGDGAD--GGVEDPDRE 242
+R H R G V +P E
Sbjct 232 YRRHHRHQAPSDHGPVLEPACE 253
>gi|118617164|ref|YP_905496.1| hypothetical protein MUL_1504 [Mycobacterium ulcerans Agy99]
gi|118569274|gb|ABL04025.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=259
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/202 (31%), Positives = 93/202 (47%), Gaps = 8/202 (3%)
Query 44 VRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVV 103
+R S+ GP PL +++V V+ P + GLLFGP++G+ + + A+ +AV+
Sbjct 59 MRDWASSVGPWLPLVFLLVHIVVTVPPFPRTAFTVAGGLLFGPVLGIVIAVTASTASAVI 118
Query 104 ASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGV 163
A L+ R AG R + G DR D + G A++ R +P + A +Y G V
Sbjct 119 ALLLVRAAGWRLNRLVPHGA-VDRLDERLRERGWLAILSLRLIPAVPFAALNYGAGASAV 177
Query 164 PLWQMAVGAFIGSAPRAFAYTALGAAI-GDRSPLLASCAIAVWCVTAIIGAFAARHGYRQ 222
+ + G P A LG+A+ GD SPLL ++ TA +G RQ
Sbjct 178 RVVPYTLSTLAGLLPGTVAVVILGSALAGDGSPLLVLVSVC----TAALGMSGLVFEVRQ 233
Query 223 WRAHARGDGAD--GGVEDPDRE 242
+R H R G V +P E
Sbjct 234 YRRHHRHQAPSDHGPVLEPACE 255
>gi|311032622|ref|ZP_07710712.1| SNARE associated Golgi protein [Bacillus sp. m3-13]
Length=222
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/153 (33%), Positives = 76/153 (50%), Gaps = 3/153 (1%)
Query 44 VRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVG-VFVTLGATVGTAV 102
+R + + G +P+ YV + + + P IL+ ++GL FG L G V+ +GAT+G AV
Sbjct 34 IREWILSFGIFSPIIYVALYTIRPLILFPASILSLAAGLAFGALWGTVYTIIGATLG-AV 92
Query 103 VASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFG 162
VA LV ++ G+ R R + + +E G + V+ R +P + SY G
Sbjct 93 VAFLVAKKFGKNITRNKTSNVRVQKIQSQMEVNGFFYVLLLRLIPLFNFDLISYLAGLSK 152
Query 163 VPLWQMAVGAFIGSAPRAFAYTALGAA-IGDRS 194
V L V IG P FAY LG++ +GD
Sbjct 153 VKLSHFVVATVIGIIPGTFAYNFLGSSFVGDNK 185
>gi|335040302|ref|ZP_08533433.1| SNARE associated protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179778|gb|EGL82412.1| SNARE associated protein [Caldalkalibacillus thermarum TA2.A1]
Length=254
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/165 (27%), Positives = 79/165 (48%), Gaps = 1/165 (0%)
Query 43 AVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAV 102
+R +++ G APL ++++ + L P IL ++GL FGP +G +L + +AV
Sbjct 37 TIREWMTSFGWYAPLVFILLFTIRPLLLFPSSILTIAAGLAFGPFLGTLYSLIGLMISAV 96
Query 103 VASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFG 162
+A V R+ G+ + G R + +E+ G + V+ R +P I+ SY G
Sbjct 97 IAFGVARKLGKEIVQKRWTG-RFRTLEIQLEQNGFFYVLVLRLIPFINFDLISYLAGISK 155
Query 163 VPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPLLASCAIAVWCV 207
V FIG P + YT +G + +R P++ + ++ +
Sbjct 156 VRFRSFLYATFIGVIPGTYGYTFVGHTLVERDPVMIMKLVVIFAL 200
>gi|148263625|ref|YP_001230331.1| hypothetical protein Gura_1562 [Geobacter uraniireducens Rf4]
gi|146397125|gb|ABQ25758.1| protein of unknown function DUF224, cysteine-rich region domain
protein [Geobacter uraniireducens Rf4]
Length=623
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/188 (28%), Positives = 88/188 (47%), Gaps = 4/188 (2%)
Query 5 NDSAPTSRR-RHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVS 63
P R + ++ LV+ + G+ +L A + ++ +++ G AP Y+++
Sbjct 395 EQGQPKKRSWKPLIFLVLLVAAVAGV-HLSGAAQYLQQEKLQALIASYGVLAPAIYILLY 453
Query 64 AVLGALFVPGPILAASSGLLFGPLVGVFVTL-GATVGTAVVASLVGRRAGRASARALLGG 122
A+ LF+PG + G+LFGP+ GV T+ GAT+G A +A LV R R A L G
Sbjct 454 ALAPVLFLPGLPITIVGGILFGPVWGVVYTITGATIG-ASLAFLVARYVARDWVAAKLTG 512
Query 123 ERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFA 182
++ D+ + + G V R +P +YAFG VP V F+ P A
Sbjct 513 PTWEKLDSEVAQHGWKVVAFTRLIPAFPFNLLNYAFGLTKVPFVHYMVATFVFMLPACIA 572
Query 183 YTALGAAI 190
+ +++
Sbjct 573 FIVFSSSL 580
>gi|240167873|ref|ZP_04746532.1| hypothetical protein MkanA1_01055 [Mycobacterium kansasii ATCC
12478]
Length=258
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/215 (31%), Positives = 101/215 (47%), Gaps = 11/215 (5%)
Query 17 VRLVVFAGFLVGMFYLVAATDVIDV---AAVRGAVSATGPAAPLTYVVVSAVLGALFVPG 73
V L G +VG+ LVA ++ + +R ++ GP PL ++VV V+ P
Sbjct 30 VSLPRMVGTVVGITALVAVALLVPLPTAVQMRDWATSVGPWFPLAFLVVHIVVTVPPFPR 89
Query 74 PILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGERADRTDALIE 133
++GLLFGP G+ + + A+ +AV++ L+ R AG R L+ DR DA +
Sbjct 90 TAFTVAAGLLFGPAWGILIAIIASTASAVISMLLVRAAGWRLNR-LVRHRAVDRLDARLR 148
Query 134 RCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAI-GD 192
G A++ R +P + A +Y G V + A+ G P A LG A+ GD
Sbjct 149 ERGWLAILSLRLIPAVPFAALNYGAGASAVRVAPYALSTLTGLLPGTAAVVILGNALAGD 208
Query 193 RSPLLASCAIAVWCVTAIIGA---FAARHGYRQWR 224
+PLL ++ C A+ A F RH RQ R
Sbjct 209 GNPLLVLVSV---CTAALGMAGLIFEVRHYRRQHR 240
>gi|113475656|ref|YP_721717.1| hypothetical protein Tery_1993 [Trichodesmium erythraeum IMS101]
gi|110166704|gb|ABG51244.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length=242
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/152 (32%), Positives = 72/152 (48%), Gaps = 5/152 (3%)
Query 48 VSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVG-VFVTLGATVGTAVVASL 106
+ P P+ ++ + + LF+PG +L +G LFGPL G ++V++G+T+G A A L
Sbjct 51 IDTLSPWGPIAFITIYILATVLFLPGSLLTLGAGFLFGPLFGSIYVSIGSTIG-ATFAFL 109
Query 107 VGRRAGRASA-RALLGGERADRTDALIERCGLWAVVG-QRFVPGISDAFASYAFGTFGVP 164
VGR R + + G E D + G W +VG R P +YAFG V
Sbjct 110 VGRYLARGWVYKQIEGNEEFKAIDKAVADEG-WKIVGLTRLSPIFPFNLLNYAFGLTQVS 168
Query 165 LWQMAVGAFIGSAPRAFAYTALGAAIGDRSPL 196
L ++IG P Y LG+ G + L
Sbjct 169 LQHYFFASWIGMMPGTVMYVYLGSLAGSLATL 200
>gi|172040707|ref|YP_001800421.1| hypothetical protein cur_1027 [Corynebacterium urealyticum DSM
7109]
gi|171852011|emb|CAQ04987.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length=232
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/137 (34%), Positives = 69/137 (51%), Gaps = 1/137 (0%)
Query 44 VRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVV 103
+R V +TGP APL Y+V+ + P + S+GL+F PL+G+ + +A +
Sbjct 42 IRDWVGSTGPWAPLAYLVLMVLCTQFPFPRTVWTLSAGLMFNPLLGITLMFLGLALSATI 101
Query 104 ASLVGRRAGRASARALLGGE-RADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFG 162
+ L+ RR G + A G + R LIE+ G AV+G R VP + + +YA G
Sbjct 102 SVLIFRRVGGRWSSAENGADPRVATLRKLIEQRGWLAVLGLRLVPAVPFSLLNYACGLVR 161
Query 163 VPLWQMAVGAFIGSAPR 179
VPL +GSAP
Sbjct 162 VPLPGFLFATVVGSAPN 178
>gi|213965597|ref|ZP_03393791.1| putative membrane protein [Corynebacterium amycolatum SK46]
gi|213951756|gb|EEB63144.1| putative membrane protein [Corynebacterium amycolatum SK46]
Length=223
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/154 (30%), Positives = 72/154 (47%), Gaps = 0/154 (0%)
Query 37 DVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96
DV VA +R G PL Y + L +P + +SG+LFGP++G + + A
Sbjct 32 DVPTVATIRQWSIDAGDWFPLLYFLAYVALTQFPIPRTVFTLASGILFGPVLGFLLAITA 91
Query 97 TVGTAVVASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASY 156
T +A+++ + R GR R L R D +E+ G V+ R + G+ +F +Y
Sbjct 92 TTVSALLSLCIVRFLGRDWIRTHLTNRRLLSLDHRLEQRGWLTVLSLRMIAGVPFSFLNY 151
Query 157 AFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAI 190
A G + + + +GSAP A LG A+
Sbjct 152 ACGLSSIRIVPYIIATALGSAPNTLAVVLLGDAL 185
>gi|332711776|ref|ZP_08431707.1| hypothetical protein LYNGBM3L_65780 [Lyngbya majuscula 3L]
gi|332349754|gb|EGJ29363.1| hypothetical protein LYNGBM3L_65780 [Lyngbya majuscula 3L]
Length=232
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/229 (28%), Positives = 98/229 (43%), Gaps = 9/229 (3%)
Query 2 STHNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDV---IDVAAVRGAVSATGPAAPLT 58
S+ + + P S+ + +RL + A LV ++ T V + + +R + G PL
Sbjct 5 SSKSQNLPQSKIQLRLRLGIGAIVLVTAALILLFTPVGSWLKLENLRLLQESMGIFGPLG 64
Query 59 YVVVSAVLGALFVPGPILAASSGLLFGPLVGVFVT-LGATVGTAVVASLVGRRAGRASAR 117
Y+++ V L VP IL S+G LFG ++G T +GAT+G A A ++ R +
Sbjct 65 YILIYIVATVLAVPDAILTFSAGALFGLMLGTLWTVIGATLG-ATAAFMIARFVAGDWVK 123
Query 118 ALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSA 177
R D+ IE+ G W V+ R P +Y FG +PL + +G
Sbjct 124 YQFQDSRFDQLSEGIEKNGFWFVLSIRLAPIFPFNAVNYLFGLTPIPLPTYVIATAVGII 183
Query 178 PRAFAYTALG----AAIGDRSPLLASCAIAVWCVTAIIGAFAARHGYRQ 222
P FAY LG AI P A+ V V + + RQ
Sbjct 184 PATFAYAWLGRSGLEAISGSPPWQLIGALVVLAVLSTTPLLWKKSKLRQ 232
>gi|172058364|ref|YP_001814824.1| SNARE associated Golgi protein [Exiguobacterium sibiricum 255-15]
gi|171990885|gb|ACB61807.1| SNARE associated Golgi protein [Exiguobacterium sibiricum 255-15]
Length=224
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (26%), Positives = 81/183 (45%), Gaps = 2/183 (1%)
Query 37 DVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVGVFV-TLG 95
+ D+ A+ + G L Y++ + +F P +L G +GP VG + +G
Sbjct 33 EQFDIQALSDWIRQQGAFGMLLYILAYTIRPLVFFPASLLTVFGGYTYGPWVGTLLDVVG 92
Query 96 ATVGTAVVASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAFAS 155
A G+ +++ + R GR ++G + D I G + V+ R +P S
Sbjct 93 AGTGS-LLSFWIARLLGRRGIEKIIGTGKLTILDERIATNGFFVVLTVRLIPLFPFDAIS 151
Query 156 YAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIGDRSPLLASCAIAVWCVTAIIGAFA 215
YA G + Q A+ +++G P AF Y +GA++ D AI ++ I+G FA
Sbjct 152 YASGLSKIKFRQFALASYLGIIPGAFVYNNIGASLRDPFSWQFFFAIFLYLFFFIVGFFA 211
Query 216 ARH 218
R
Sbjct 212 QRK 214
>gi|327537527|gb|EGF24246.1| membrane protein containing SNARE domain [Rhodopirellula baltica
WH47]
Length=538
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/158 (33%), Positives = 78/158 (50%), Gaps = 6/158 (3%)
Query 37 DVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVG-VFVTLG 95
DV+ +A+ + + G P+ V++ V LFVPG IL ++G +FG LVG + V++G
Sbjct 36 DVV-TSAMNEWIGSLGWWGPVVLVLLYIVATVLFVPGTILTLAAGAIFGLLVGTIVVSIG 94
Query 96 ATVGTAVVASLVGRRAGRAS-ARALLGGERADRTDALIERCGLWAVVG-QRFVPGISDAF 153
+T+G A +A L+ R R A+ R D IE G W +VG R P +
Sbjct 95 STIG-AALAFLISRYVARERVAKLAKDNRRFAAIDRAIEEGG-WKIVGLLRLSPALPFNL 152
Query 154 ASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIG 191
+Y +G + W A+ ++I P F Y LG G
Sbjct 153 QNYLYGLTPIRFWPYALTSWIAMLPATFLYVYLGHVTG 190
>gi|333921810|ref|YP_004495391.1| hypothetical protein AS9A_4157 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484031|gb|AEF42591.1| Putative integral membrane protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=227
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/215 (31%), Positives = 96/215 (45%), Gaps = 1/215 (0%)
Query 4 HNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGAVSATGPAAPLTYVVVS 63
H D S +++L V A ++ DV VA VR V++ G L +V+V
Sbjct 2 HQDETGRSFFTPLLKLAVLACIIIAGALAAIIIDVPTVAEVRSQVASAGLVGALVFVLVY 61
Query 64 AVLGALFVPGPILAASSGLLFGPLVGVFVTLGATVGTAVVASLVGRRAGRASARALLGGE 123
A L ++ P +L+ +SG+LFG G V L + A V+ L+G+ G A A GG
Sbjct 62 AALSSIPSPASVLSIASGVLFGFAGGAAVVLVGAMIAATVSYLLGKHLG-AEAVVRYGGA 120
Query 124 RADRTDALIERCGLWAVVGQRFVPGISDAFASYAFGTFGVPLWQMAVGAFIGSAPRAFAY 183
R R + R G AV+ R VP +YA G G+ +G +G P +Y
Sbjct 121 RTRRVVHFLRRRGFVAVLLVRLVPLFPFWLVNYAGGISGIKARDYFLGTALGIVPGVLSY 180
Query 184 TALGAAIGDRSPLLASCAIAVWCVTAIIGAFAARH 218
ALGA + AIA + + GA+ AR
Sbjct 181 VALGAFGTQPLSWPFAAAIAAFVLLTAGGAYYARR 215
>gi|222054839|ref|YP_002537201.1| hypothetical protein Geob_1742 [Geobacter sp. FRC-32]
gi|221564128|gb|ACM20100.1| SNARE associated Golgi protein [Geobacter sp. FRC-32]
Length=807
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/157 (31%), Positives = 71/157 (46%), Gaps = 2/157 (1%)
Query 35 ATDVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVG-VFVT 93
A+ ++ +R + G APL Y+ V AL PG L+ + +FGP G V+
Sbjct 402 ASQYLEPEKLRTLFAGFGVVAPLVYIACYIVAPALMFPGLPLSIAGATVFGPFWGVVYTI 461
Query 94 LGATVGTAVVASLVGRRAGRASARALLGGERADRTDALIERCGLWAVVGQRFVPGISDAF 153
+GAT+G A A L+ R A R L G R ++ D + G AV R +P
Sbjct 462 IGATLG-ACAAFLIARYAARDWVERRLVGSRWNKLDDETGKNGWKAVAVTRLIPLFPFNL 520
Query 154 ASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAI 190
++AFG + Q AV FI P AY +++
Sbjct 521 LNFAFGLTQISFLQYAVATFIFMLPGTIAYITFSSSL 557
>gi|32476849|ref|NP_869843.1| hypothetical protein RB11207 [Rhodopirellula baltica SH 1]
gi|32447397|emb|CAD78986.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length=538
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/158 (32%), Positives = 77/158 (49%), Gaps = 6/158 (3%)
Query 37 DVIDVAAVRGAVSATGPAAPLTYVVVSAVLGALFVPGPILAASSGLLFGPLVG-VFVTLG 95
DV+ +A+ + + G P+ V++ V LFVPG IL ++G +FG LVG + V++G
Sbjct 36 DVV-TSAMNEWIGSLGWWGPVVLVLLYIVATVLFVPGTILTLAAGAIFGLLVGTIVVSIG 94
Query 96 ATVGTAVVASLVGRRAGRAS-ARALLGGERADRTDALIERCGLWAVVG-QRFVPGISDAF 153
+T+G A +A L+ R R A+ R D IE G W +VG R P +
Sbjct 95 STIG-AALAFLISRYVARERVAKLAKDNRRFAAIDRAIEEGG-WKIVGLLRLSPALPFNL 152
Query 154 ASYAFGTFGVPLWQMAVGAFIGSAPRAFAYTALGAAIG 191
+Y +G + W + ++I P F Y LG G
Sbjct 153 QNYLYGLTPIRFWPYVLTSWIAMLPATFLYVYLGHVTG 190
Lambda K H
0.325 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 346350635400
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40