BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0627

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|194320087|pdb|3DBO|B  Chain B, Crystal Structure Of A Member O...   256    1e-66
gi|15607767|ref|NP_215141.1|  hypothetical protein Rv0627 [Mycoba...   254    3e-66
gi|41408125|ref|NP_960961.1|  hypothetical protein MAP2027c [Myco...   218    2e-55
gi|254820582|ref|ZP_05225583.1|  hypothetical protein MintA_11676...   216    7e-55
gi|254774872|ref|ZP_05216388.1|  hypothetical protein MaviaA2_093...   208    2e-52
gi|289749125|ref|ZP_06508503.1|  conserved hypothetical protein [...   203    9e-51
gi|284046267|ref|YP_003396607.1|  PilT protein domain protein [Co...  87.8    5e-16
gi|340625625|ref|YP_004744077.1|  hypothetical protein MCAN_06011...  81.3    4e-14
gi|15607735|ref|NP_215109.1|  hypothetical protein Rv0595c [Mycob...  81.3    5e-14
gi|15839998|ref|NP_335035.1|  hypothetical protein MT0625 [Mycoba...  80.9    5e-14
gi|289756674|ref|ZP_06516052.1|  conserved hypothetical protein [...  80.9    6e-14
gi|145595623|ref|YP_001159920.1|  PilT domain-containing protein ...  72.8    2e-11
gi|340625683|ref|YP_004744135.1|  hypothetical protein MCAN_06641...  72.4    2e-11
gi|336179974|ref|YP_004585349.1|  PilT protein domain-containing ...  69.7    1e-10
gi|288917699|ref|ZP_06412062.1|  PilT protein domain protein [Fra...  69.7    1e-10
gi|158312409|ref|YP_001504917.1|  PilT domain-containing protein ...  69.7    1e-10
gi|240169379|ref|ZP_04748038.1|  hypothetical protein MkanA1_0870...  67.4    7e-10
gi|86742786|ref|YP_483186.1|  PilT protein-like protein [Frankia ...  67.0    8e-10
gi|302560132|ref|ZP_07312474.1|  PIN family toxin-antitoxin syste...  63.2    1e-08
gi|284045166|ref|YP_003395506.1|  PilT protein domain protein [Co...  61.2    4e-08
gi|291439037|ref|ZP_06578427.1|  PilT protein domain-containing p...  61.2    5e-08
gi|326778702|ref|ZP_08237967.1|  PilT protein domain protein [Str...  61.2    5e-08
gi|318060958|ref|ZP_07979679.1|  PilT protein-like protein [Strep...  60.8    7e-08
gi|288916357|ref|ZP_06410736.1|  PilT protein domain protein [Fra...  60.8    7e-08
gi|256372766|ref|YP_003110590.1|  hypothetical protein Afer_2016 ...  60.5    8e-08
gi|329941279|ref|ZP_08290558.1|  PilT protein domain protein [Str...  59.7    1e-07
gi|302036027|ref|YP_003796349.1|  putative PilT-like protein [Can...  59.3    2e-07
gi|297159809|gb|ADI09521.1|  PilT-like protein [Streptomyces bing...  58.9    2e-07
gi|15607805|ref|NP_215179.1|  hypothetical protein Rv0665 [Mycoba...  56.6    1e-06
gi|116619645|ref|YP_821801.1|  PilT domain-containing protein [Ca...  56.2    1e-06
gi|94265566|ref|ZP_01289311.1|  PilT protein-like [delta proteoba...  55.1    3e-06
gi|339498750|ref|YP_004696785.1|  PilT protein domain-containing ...  55.1    3e-06
gi|86738864|ref|YP_479264.1|  PilT protein-like protein [Frankia ...  54.3    6e-06
gi|288931927|ref|YP_003435987.1|  PilT protein domain protein [Fe...  53.9    7e-06
gi|260893197|ref|YP_003239294.1|  PilT protein domain protein [Am...  53.9    8e-06
gi|344338644|ref|ZP_08769575.1|  PilT protein domain protein [Thi...  53.5    1e-05
gi|239989892|ref|ZP_04710556.1|  PilT domain-containing protein [...  53.1    1e-05
gi|220934242|ref|YP_002513141.1|  PilT protein domain-containing ...  52.8    2e-05
gi|240171945|ref|ZP_04750604.1|  PilT protein-like [Mycobacterium...  52.8    2e-05
gi|330822406|ref|YP_004362627.1|  PIN domain protein [Burkholderi...  52.8    2e-05
gi|339323400|ref|YP_004682294.1|  outer membrane protein [Cupriav...  52.4    2e-05
gi|309790890|ref|ZP_07685433.1|  PilT protein domain protein [Osc...  52.0    3e-05
gi|116687254|ref|YP_840500.1|  PilT domain-containing protein [Bu...  52.0    3e-05
gi|206480017|ref|YP_002235528.1|  PIN domain protein [Burkholderi...  52.0    3e-05
gi|167841609|ref|ZP_02468293.1|  PilT protein domain protein [Bur...  51.6    4e-05
gi|227358132|ref|ZP_03842473.1|  nucleic acid-binding protein [Pr...  51.6    4e-05
gi|148262123|ref|YP_001228829.1|  PilT domain-containing protein ...  51.2    5e-05
gi|256828120|ref|YP_003156848.1|  twitching motility protein PilT...  50.8    6e-05
gi|304311489|ref|YP_003811087.1|  Predicted nucleic acid-binding ...  50.8    6e-05
gi|262369246|ref|ZP_06062574.1|  virulence associated protein Vap...  50.8    7e-05


>gi|194320087|pdb|3DBO|B Chain B, Crystal Structure Of A Member Of The Vapbc Family Of 
Toxin- Antitoxin Systems, Vapbc-5, From Mycobacterium Tuberculosis
Length=150

 Score =  256 bits (653),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  1    VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL  60
            VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL
Sbjct  16   VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL  75

Query  61   ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD  120
            ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD
Sbjct  76   ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD  135

Query  121  FAALDGAASVEIIRV  135
            FAALDGAASVEIIRV
Sbjct  136  FAALDGAASVEIIRV  150


>gi|15607767|ref|NP_215141.1| hypothetical protein Rv0627 [Mycobacterium tuberculosis H37Rv]
 gi|31791809|ref|NP_854302.1| hypothetical protein Mb0643 [Mycobacterium bovis AF2122/97]
 gi|121636546|ref|YP_976769.1| hypothetical protein BCG_0673 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 74 more sequence titles
 Length=135

 Score =  254 bits (649),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  1    VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL  60
            +STTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL
Sbjct  1    MSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL  60

Query  61   ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD  120
            ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD
Sbjct  61   ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD  120

Query  121  FAALDGAASVEIIRV  135
            FAALDGAASVEIIRV
Sbjct  121  FAALDGAASVEIIRV  135


>gi|41408125|ref|NP_960961.1| hypothetical protein MAP2027c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396480|gb|AAS04344.1| hypothetical protein MAP_2027c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336461800|gb|EGO40658.1| putative nucleic acid-binding protein, contains PIN domain [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=135

 Score =  218 bits (555),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 110/131 (84%), Positives = 121/131 (93%), Gaps = 0/131 (0%)

Query  5    PAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLE  64
            PAAGVLDTSVFIA+ESGRQLDEA IPD VATTVVTLAEL  GVLAA T+++RAQRLATLE
Sbjct  5    PAAGVLDTSVFIASESGRQLDEARIPDEVATTVVTLAELHAGVLAATTSNVRAQRLATLE  64

Query  65   SVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL  124
            S+ADME LPVDDDA RMWARLRIHLAE+GRR+R NDLWIAA+AASR LPV+TQDDDFAAL
Sbjct  65   SIADMEMLPVDDDAVRMWARLRIHLAEAGRRMRANDLWIAAIAASRGLPVVTQDDDFAAL  124

Query  125  DGAASVEIIRV  135
            DGAA++ IIRV
Sbjct  125  DGAANLAIIRV  135


>gi|254820582|ref|ZP_05225583.1| hypothetical protein MintA_11676 [Mycobacterium intracellulare 
ATCC 13950]
Length=135

 Score =  216 bits (551),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 110/135 (82%), Positives = 123/135 (92%), Gaps = 0/135 (0%)

Query  1    VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL  60
            +S    AGVLDTSVFIATESGR LD ALIPD+V TTVVTLAEL VGVLAA+T+DIRAQRL
Sbjct  1    MSNPQVAGVLDTSVFIATESGRPLDAALIPDQVGTTVVTLAELHVGVLAASTSDIRAQRL  60

Query  61   ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD  120
            ATLES+AD+E LPVDDDAARMWARLRIHLAE+G+RVRINDLWIAA+AASR LPV+TQDDD
Sbjct  61   ATLESIADIEALPVDDDAARMWARLRIHLAETGQRVRINDLWIAAIAASRGLPVVTQDDD  120

Query  121  FAALDGAASVEIIRV  135
            FA LDGAA++ +IRV
Sbjct  121  FAVLDGAANLTVIRV  135


>gi|254774872|ref|ZP_05216388.1| hypothetical protein MaviaA2_09395 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=127

 Score =  208 bits (529),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 104/127 (82%), Positives = 116/127 (92%), Gaps = 0/127 (0%)

Query  9    VLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVAD  68
            +LDTSVFIA+ESGR LDEA IPD VATTV+TLAEL  GVLAA T+D+RAQRLATLES+AD
Sbjct  1    MLDTSVFIASESGRHLDEARIPDEVATTVITLAELHAGVLAATTSDVRAQRLATLESIAD  60

Query  69   METLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAA  128
            ME LPVDDDAARMWARLRIHLAE+GRR+R NDLWIA +AASR LPV+TQDDDFAALDGAA
Sbjct  61   MEMLPVDDDAARMWARLRIHLAEAGRRMRANDLWIAGIAASRGLPVVTQDDDFAALDGAA  120

Query  129  SVEIIRV  135
            ++ IIRV
Sbjct  121  NLAIIRV  127


>gi|289749125|ref|ZP_06508503.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689712|gb|EFD57141.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=108

 Score =  203 bits (516),  Expect = 9e-51, Method: Compositional matrix adjust.
 Identities = 107/108 (99%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  28   LIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRI  87
            +IPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRI
Sbjct  1    MIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRI  60

Query  88   HLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV  135
            HLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV
Sbjct  61   HLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV  108


>gi|284046267|ref|YP_003396607.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283950488|gb|ADB53232.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=127

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 57/116 (50%), Positives = 73/116 (63%), Gaps = 3/116 (2%)

Query  11   DTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV-ADM  69
            DTSVF+A ESGR L E  +PDR+A +VVT AEL +GVL A     RA+RL TL  V +  
Sbjct  7    DTSVFVAQESGRTLGE--LPDRIAVSVVTAAELELGVLRARDAATRARRLNTLARVRSAY  64

Query  70   ETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD  125
              LP+D + A  +A +       GRR+R +D+WIAA A    +PV+TQD DF A D
Sbjct  65   PLLPIDAETASCFAGIADEELGQGRRLRRHDVWIAATALRHGVPVVTQDADFTAFD  120


>gi|340625625|ref|YP_004744077.1| hypothetical protein MCAN_06011 [Mycobacterium canettii CIPT 
140010059]
 gi|340003815|emb|CCC42941.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=130

 Score = 81.3 bits (199),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)

Query  11   DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES  65
            DTSVFI  E+ R       PDR A      +VVTL ELR+GVL A+  +  A+RL+T + 
Sbjct  9    DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63

Query  66   VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD  125
                E L +D+  +  WA L   L  +  RV IND WIAA A +  + ++TQD+D+AA+ 
Sbjct  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAIVTQDNDYAAM-  122

Query  126  GAASVEIIRV  135
                VE+I +
Sbjct  123  --PDVEVITI  130


>gi|15607735|ref|NP_215109.1| hypothetical protein Rv0595c [Mycobacterium tuberculosis H37Rv]
 gi|31791777|ref|NP_854270.1| hypothetical protein Mb0611c [Mycobacterium bovis AF2122/97]
 gi|121636513|ref|YP_976736.1| hypothetical protein BCG_0641c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 47 more sequence titles
 Length=130

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)

Query  11   DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES  65
            DTSVFI  E+ R       PDR A      +VVTL ELR+GVL A+  +  A+RL+T + 
Sbjct  9    DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63

Query  66   VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD  125
                E L +D+  +  WA L   L  +  RV IND WIAA A +  + ++TQD+D+AA+ 
Sbjct  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM-  122

Query  126  GAASVEIIRV  135
                VE+I +
Sbjct  123  --PDVEVITI  130


>gi|15839998|ref|NP_335035.1| hypothetical protein MT0625 [Mycobacterium tuberculosis CDC1551]
 gi|167969018|ref|ZP_02551295.1| hypothetical protein MtubH3_13717 [Mycobacterium tuberculosis 
H37Ra]
 gi|254230934|ref|ZP_04924261.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 27 more sequence titles
 Length=131

 Score = 80.9 bits (198),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)

Query  11   DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES  65
            DTSVFI  E+ R       PDR A      +VVTL ELR+GVL A+  +  A+RL+T + 
Sbjct  10   DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  64

Query  66   VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD  125
                E L +D+  +  WA L   L  +  RV IND WIAA A +  + ++TQD+D+AA+ 
Sbjct  65   AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM-  123

Query  126  GAASVEIIRV  135
                VE+I +
Sbjct  124  --PDVEVITI  131


>gi|289756674|ref|ZP_06516052.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289712238|gb|EFD76250.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=130

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 50/119 (43%), Positives = 69/119 (58%), Gaps = 10/119 (8%)

Query  11   DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES  65
            DTSVFI  E+ R       PDR A      +VVTL ELR+GVL A+  +  A+RL+T + 
Sbjct  9    DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63

Query  66   VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL  124
                E L +D+  +  WA L   L  +  RV IND WIAA A +  + ++TQD+D+AA+
Sbjct  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM  122


>gi|145595623|ref|YP_001159920.1| PilT domain-containing protein [Salinispora tropica CNB-440]
 gi|145304960|gb|ABP55542.1| PilT protein domain protein [Salinispora tropica CNB-440]
Length=127

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 55/122 (46%), Positives = 73/122 (60%), Gaps = 10/122 (8%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67
            G+LDTS+ IAT      D   IP  +A +V +LAEL+ GVLAA T D RA RLA L ++ 
Sbjct  4    GILDTSILIAT------DVTPIPGELAISVTSLAELQFGVLAAKTADARAGRLARLSAIQ  57

Query  68   -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA  123
               + LP+D+  A  +ARL   + E GR  R R+ DL IAA A +    V T++ DDFA 
Sbjct  58   RRFDPLPIDEAVADSYARLAARVVEIGRQPRARVMDLLIAATAHAHDAAVYTRNADDFAG  117

Query  124  LD  125
            L+
Sbjct  118  LE  119


>gi|340625683|ref|YP_004744135.1| hypothetical protein MCAN_06641 [Mycobacterium canettii CIPT 
140010059]
 gi|340003873|emb|CCC43004.1| putative uncharacterized protein mb0684 [Mycobacterium canettii 
CIPT 140010059]
Length=137

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 47/116 (41%), Positives = 69/116 (60%), Gaps = 4/116 (3%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67
            G+LDTSVFIA ESG  + +  +P+RVA +V+T+ EL++GVL A  +  R++R  TL    
Sbjct  9    GLLDTSVFIARESGGAIAD--LPERVALSVMTIGELQLGVLNAGDSATRSRRADTLALAR  66

Query  68   DMETLPVDDDAARMWARLRIHLAESG--RRVRINDLWIAAVAASRALPVITQDDDF  121
              + +PV +      ARL      +G  R V++ D  IAA A    LP++T+D DF
Sbjct  67   TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAIEHGLPLVTRDADF  122


>gi|336179974|ref|YP_004585349.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334860954|gb|AEH11428.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=127

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 52/122 (43%), Positives = 70/122 (58%), Gaps = 10/122 (8%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67
            G+LDTSV +AT      D A IP  +A +V+++AEL+ GVL A T + RA RLA L ++ 
Sbjct  4    GILDTSVLVAT------DVAPIPGELAVSVISIAELQFGVLVARTPEARANRLARLSALQ  57

Query  68   -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA  123
               + LPVDD  A  + RL   + E GR  R R  DL IAA A +    V T++  D A 
Sbjct  58   RRFDPLPVDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRNAADLAG  117

Query  124  LD  125
            L+
Sbjct  118  LE  119


>gi|288917699|ref|ZP_06412062.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288350914|gb|EFC85128.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=127

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 48/114 (43%), Positives = 66/114 (58%), Gaps = 9/114 (7%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67
            G+LDTSV +AT      D A IP  +A +V+++AEL  GVL A T++ RA RLA L ++ 
Sbjct  4    GILDTSVLVAT------DVAPIPGELAISVISIAELHFGVLVAKTSETRANRLARLSALQ  57

Query  68   -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD  118
               + LP+DD  A  + RL   + E GR  R R  DL IAA A +    V T++
Sbjct  58   RRFDPLPLDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRN  111


>gi|158312409|ref|YP_001504917.1| PilT domain-containing protein [Frankia sp. EAN1pec]
 gi|158107814|gb|ABW10011.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=127

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 49/122 (41%), Positives = 69/122 (57%), Gaps = 10/122 (8%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67
            GVLDTSV +AT      D   IP  +A +V+++AEL+ G+L A T   RA RLA L ++ 
Sbjct  4    GVLDTSVLVAT------DVTPIPGELAVSVISIAELQFGILVAKTPQARATRLARLSTIQ  57

Query  68   -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA  123
               + LP+DD  A  + RL   + E+GR  R R  DL IAA A +    + T++  D A 
Sbjct  58   RRFDPLPIDDAVADSYGRLAARVVEAGRQPRARTMDLLIAATAHAHGASIYTRNAADLAG  117

Query  124  LD  125
            L+
Sbjct  118  LE  119


>gi|240169379|ref|ZP_04748038.1| hypothetical protein MkanA1_08703 [Mycobacterium kansasii ATCC 
12478]
Length=126

 Score = 67.4 bits (163),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 39/96 (41%), Positives = 56/96 (59%), Gaps = 3/96 (3%)

Query  38   VTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHLAESGRRVR  97
            +TL ELR+GVL A   +  A+RL+T +     E L VD+  +  WA L   L  +  R  
Sbjct  32   LTLGELRLGVLQAPGPEAAARRLSTYQLAQRFEPLSVDERVSEAWALLVSKLRAAHLREP  91

Query  98   INDLWIAAVAASRALPVITQDDDFAALDGAASVEII  133
            IND WIAA A +  +P++TQD D++A+     VE+I
Sbjct  92   INDSWIAATAVAHQIPIVTQDGDYSAV---PDVEVI  124


>gi|86742786|ref|YP_483186.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86569648|gb|ABD13457.1| PilT protein-like [Frankia sp. CcI3]
Length=127

 Score = 67.0 bits (162),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 49/122 (41%), Positives = 68/122 (56%), Gaps = 10/122 (8%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67
            GVLDTSV +AT      D   +P  +A +V+++AEL+ G+L A T   RA RLA L ++ 
Sbjct  4    GVLDTSVLVAT------DVTPLPGELAVSVISIAELQFGILVARTPQARATRLARLSAIQ  57

Query  68   -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA  123
               + LPVDD  A  + RL   + E GR  R R  DL IAA A +    + T++  D A 
Sbjct  58   RRFDPLPVDDAVADSYGRLAARVVEVGRQPRARTMDLLIAATAHAHGASIYTRNAADLAG  117

Query  124  LD  125
            L+
Sbjct  118  LE  119


>gi|302560132|ref|ZP_07312474.1| PIN family toxin-antitoxin system, toxin component [Streptomyces 
griseoflavus Tu4000]
 gi|302477750|gb|EFL40843.1| PIN family toxin-antitoxin system, toxin component [Streptomyces 
griseoflavus Tu4000]
Length=155

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 48/136 (36%), Positives = 72/136 (53%), Gaps = 16/136 (11%)

Query  3    TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTD--------  54
            +T   G+LDT++ I     R +D   +PD +A T +TLAEL  G       D        
Sbjct  6    STHQQGLLDTNIMILR---RWVDPEELPDEMAITAITLAELSAGPHEVRRNDEQSSYDEH  62

Query  55   -IRAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR  110
              RA+RL  L+   +  + +P D +AAR++ R+   +  +GR  R R+ DL IAA+A + 
Sbjct  63   AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRVADLMIAAIAVAE  122

Query  111  ALPVITQD-DDFAALD  125
             LP+ T + DDF  LD
Sbjct  123  NLPLFTTNPDDFKGLD  138


>gi|284045166|ref|YP_003395506.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283949387|gb|ADB52131.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=139

 Score = 61.2 bits (147),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 52/123 (43%), Positives = 62/123 (51%), Gaps = 6/123 (4%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV-  66
            GVLDTS  I     R +D   +P     T VTLAEL VG L A+    RA R A L+   
Sbjct  8    GVLDTSTVILLP--RIVDPQTLPVEPLITAVTLAELSVGPLVASDERERAARQAHLQQAE  65

Query  67   ADMETLPVDDDAARMWARLRIHLAESGRR--VRINDLWIAAVAASRALPVITQD-DDFAA  123
            AD   LP D  AAR + R+   L   GR+   R  D  IAA A +  LPV T +  DF  
Sbjct  66   ADFVPLPFDAAAARAFGRVAASLRRDGRKPAARSYDAMIAATALANELPVYTANPSDFRG  125

Query  124  LDG  126
            +DG
Sbjct  126  IDG  128


>gi|291439037|ref|ZP_06578427.1| PilT protein domain-containing protein [Streptomyces ghanaensis 
ATCC 14672]
 gi|291341932|gb|EFE68888.1| PilT protein domain-containing protein [Streptomyces ghanaensis 
ATCC 14672]
Length=155

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 48/136 (36%), Positives = 71/136 (53%), Gaps = 16/136 (11%)

Query  3    TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI-------  55
            +T   G+LDT++ I     R +    +PD +A T +TLAEL  G       D        
Sbjct  6    STHQQGLLDTNIMILR---RWVAPEELPDEMAITAITLAELSAGPHEVRRNDEQSSYDEH  62

Query  56   --RAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR  110
              RA+RL  L+   +  + +P D +AAR++ R+   +  SGR  R R+ DL IAA+A + 
Sbjct  63   AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISSGRKPRRRVADLMIAAIAVAE  122

Query  111  ALPVITQD-DDFAALD  125
             LP+ T + DDF  LD
Sbjct  123  NLPLFTTNPDDFKGLD  138


>gi|326778702|ref|ZP_08237967.1| PilT protein domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326659035|gb|EGE43881.1| PilT protein domain protein [Streptomyces griseus XylebKG-1]
Length=155

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 48/136 (36%), Positives = 71/136 (53%), Gaps = 16/136 (11%)

Query  3    TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI-------  55
            +T   G+LDT++ I     R +    +PD VA T +TLAEL  G       D        
Sbjct  6    STYKQGLLDTNIMILR---RWVVPEELPDEVAITAITLAELSAGPHEVRRNDEQSGYDEH  62

Query  56   --RAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR  110
              RA+RL  L+   +  + +P D +AAR++ R+   +  +GR  R R+ DL IAA+A + 
Sbjct  63   AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRVADLMIAAIAVAE  122

Query  111  ALPVITQD-DDFAALD  125
             LP+ T + DDF  LD
Sbjct  123  GLPLFTTNPDDFKGLD  138


>gi|318060958|ref|ZP_07979679.1| PilT protein-like protein [Streptomyces sp. SA3_actG]
 gi|318077121|ref|ZP_07984453.1| PilT protein-like protein [Streptomyces sp. SA3_actF]
Length=155

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 47/134 (36%), Positives = 71/134 (53%), Gaps = 16/134 (11%)

Query  6    AAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI---------R  56
            A G+LDT++ I     + +    +PD +A T VTLAEL  G       +          R
Sbjct  9    AQGLLDTNIMILR---KWVAPEELPDEMAITSVTLAELSAGPHEVRRNEEQGDYDEHAER  65

Query  57   AQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALP  113
            A+RL  L+   +  + +P D +AAR++ R+   +  +GR  R R+ DL IAA+A +  LP
Sbjct  66   ARRLDVLQRAENEFDPIPFDAEAARVYGRICAAVISAGRKPRRRVADLMIAAIAVAEGLP  125

Query  114  VITQD-DDFAALDG  126
            + T + DDF  LDG
Sbjct  126  LFTTNPDDFKGLDG  139


>gi|288916357|ref|ZP_06410736.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288352336|gb|EFC86534.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=155

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 16/131 (12%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTD---------IRAQ  58
            G+LDT++ I     R +D A +PD +A + VTLAEL  G       D          RA+
Sbjct  9    GLLDTNILILR---RWIDPAELPDEMAISAVTLAELSAGPHQVRRNDDQDLYDEHEERAR  65

Query  59   RLATLESVAD-METLPVDDDAARMWARLRIHLAESGRRV--RINDLWIAAVAASRALPVI  115
            R+ TL+   +  + +P D +AAR++ RL   +  +GRR   R+ DL IAA A + +LP+ 
Sbjct  66   RMETLQRAENEFDPIPFDAEAARVYGRLSAAVVAAGRRPRRRVADLMIAATAITESLPLF  125

Query  116  TQDD-DFAALD  125
            T +  D+  L+
Sbjct  126  TTNPGDYVGLE  136


>gi|256372766|ref|YP_003110590.1| hypothetical protein Afer_2016 [Acidimicrobium ferrooxidans DSM 
10331]
 gi|256009350|gb|ACU54917.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=112

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 2/100 (2%)

Query  9    VLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVAD  68
            +LDTS F+ATESGR L           +VVT+AEL +GVL A   D R  R+ATL +V  
Sbjct  4    LLDTSFFVATESGRPLGAMEGVTDTEVSVVTVAELTLGVLMANDDD-RPARVATLSAVES  62

Query  69   M-ETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVA  107
              + LPVD + AR +AR+   L    RRV I D+ +AA A
Sbjct  63   TWDPLPVDAEVARQFARVAAVLHAERRRVPILDVLVAATA  102


>gi|329941279|ref|ZP_08290558.1| PilT protein domain protein [Streptomyces griseoaurantiacus M045]
 gi|329299810|gb|EGG43709.1| PilT protein domain protein [Streptomyces griseoaurantiacus M045]
Length=155

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 47/136 (35%), Positives = 71/136 (53%), Gaps = 16/136 (11%)

Query  3    TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI-------  55
            +T   G+LDT++ I     R +    +PD +A T +TLAEL  G       D        
Sbjct  6    STHQQGLLDTNIMILR---RWVAPEELPDEMAITAITLAELSAGPHEVRRNDEQSSYDEH  62

Query  56   --RAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR  110
              RA+RL  L+   +  + +P D +AAR++ R+   +  +GR  R R+ DL IAA+A + 
Sbjct  63   AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRVADLMIAAIAVAE  122

Query  111  ALPVITQD-DDFAALD  125
             LP+ T + DDF  LD
Sbjct  123  NLPLFTTNPDDFKGLD  138


>gi|302036027|ref|YP_003796349.1| putative PilT-like protein [Candidatus Nitrospira defluvii]
 gi|300604091|emb|CBK40423.1| putative PilT-like protein, containing PIN domain [Candidatus 
Nitrospira defluvii]
Length=135

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 37/118 (32%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query  9    VLDTSVFIATESGRQLDEALIP--DRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV  66
            +LD+S +IA +        +I   + +  + + L ELR G L  A  D   + L      
Sbjct  5    LLDSSAYIAFKKRHPAVTEIISQAELIFMSPIVLGELRAGFLQGAKRDRNERELQLFLHS  64

Query  67   ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL  124
              +  L +D + +  +A +R+ L ++G  V +NDLWIAA A    LPV+T D DF  +
Sbjct  65   PRIRVLALDAETSDRYALIRVTLKKAGTPVAVNDLWIAASAMQHGLPVLTSDRDFQKI  122


>gi|297159809|gb|ADI09521.1| PilT-like protein [Streptomyces bingchenggensis BCW-1]
Length=152

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 48/138 (35%), Positives = 73/138 (53%), Gaps = 16/138 (11%)

Query  6    AAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI---------R  56
            A G+LDT++ I     + L+   +P  VA + +TLAEL  G       +          R
Sbjct  6    AQGLLDTNIMILR---KWLNPDELPAEVAISAITLAELSAGPHEVRRNEEQDDYDEHAER  62

Query  57   AQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALP  113
            A+R+  L+   +  + +P D +AAR++ R+   +  +GR  R RI DL IAAVA +  LP
Sbjct  63   ARRMDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRIADLMIAAVAIAEDLP  122

Query  114  VITQD-DDFAALDGAASV  130
            + T + DDF  LDG  +V
Sbjct  123  LFTTNPDDFKGLDGLLTV  140


>gi|15607805|ref|NP_215179.1| hypothetical protein Rv0665 [Mycobacterium tuberculosis H37Rv]
 gi|15840068|ref|NP_335105.1| hypothetical protein MT0693 [Mycobacterium tuberculosis CDC1551]
 gi|31791849|ref|NP_854342.1| hypothetical protein Mb0684 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=112

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 40/102 (40%), Positives = 60/102 (59%), Gaps = 4/102 (3%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67
            G+LDTSVFIA ESG  + +  +P+RVA +V+T+ EL++G+L A  +  R++R  TL    
Sbjct  9    GLLDTSVFIARESGGAIAD--LPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALAR  66

Query  68   DMETLPVDDDAARMWARLRIHLAESG--RRVRINDLWIAAVA  107
              + +PV +      ARL      +G  R V++ D  IAA A
Sbjct  67   TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108


>gi|116619645|ref|YP_821801.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116222807|gb|ABJ81516.1| PilT protein domain protein [Candidatus Solibacter usitatus Ellin6076]
Length=125

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 39/115 (34%), Positives = 61/115 (54%), Gaps = 4/115 (3%)

Query  9    VLDTSVFIATESGRQLDEALIP--DRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV  66
            +LDT+   A   G  L E ++     +A  V+ L E R G+ A +   IR ++    + V
Sbjct  2    ILDTNGLSAIADGDPLLEPILARASELALPVIVLGEYRYGI-AQSRNRIRYEKWLK-DLV  59

Query  67   ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDF  121
            ++   L VDD  A  +A LR  L   G  +  ND+WIAA+A   ++PVI++D+ F
Sbjct  60   SNCRVLNVDDATAAEYAILRSELKRGGSPIPANDVWIAALARQHSMPVISRDEHF  114


>gi|94265566|ref|ZP_01289311.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|93453895|gb|EAT04250.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=136

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 34/120 (29%), Positives = 55/120 (46%), Gaps = 2/120 (1%)

Query  9    VLDTSVFIATESGRQLDEALI--PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV  66
            +LDT+ ++A +    L   +I   D +    + L EL  G        +  + L      
Sbjct  5    LLDTNFYVAFKRNTPLAAEIIRRADYIGLNTIVLGELLAGFRCGGRETVNRRELDQFIDS  64

Query  67   ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDG  126
              +E L +D++    +AR+   L E GR +  NDLWIAA A    L + + D  F+ +DG
Sbjct  65   PRVELLDIDEETTEFYARVFRALKEKGRPIPTNDLWIAASALRHGLALASFDAHFSYIDG  124


>gi|339498750|ref|YP_004696785.1| PilT protein domain-containing protein [Spirochaeta caldaria 
DSM 7334]
 gi|338833099|gb|AEJ18277.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 35/124 (29%), Positives = 69/124 (56%), Gaps = 8/124 (6%)

Query  9    VLDTSV--FIATESGRQLDEAL---IPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL  63
            +LDT++  FI  +  +Q+ + L   I   +  + +T+AEL  GV    + +I    ++ +
Sbjct  3    LLDTNICIFIKNKKPKQVLDHLHQVINQNLYISSITVAELYFGVFN--SQNIEKNHISLV  60

Query  64   ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFA  122
            E +A  + L  DD+ A+ + R+R  L + G+ +   D+ IAA A ++ L ++T + ++F 
Sbjct  61   EFLAPFKILDFDDEDAKEFGRIRSKLKKEGKLIGPYDMQIAAQAIAKKLILVTNNTNEFI  120

Query  123  ALDG  126
             +DG
Sbjct  121  RVDG  124


>gi|86738864|ref|YP_479264.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86565726|gb|ABD09535.1| PilT protein-like [Frankia sp. CcI3]
Length=157

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 45/131 (35%), Positives = 69/131 (53%), Gaps = 16/131 (12%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTD---------IRAQ  58
            G+LDT++ I     R ++ A +PD +A +VVTLAEL  G       D          RA+
Sbjct  11   GLLDTNILILR---RWVNVAELPDEMAISVVTLAELSAGPHQVRRNDEQDLYDEHEERAR  67

Query  59   RLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVI  115
            R+  L+   +  + +P D +AAR++ RL   +  +GR  R R  DL IAA A +  LP+ 
Sbjct  68   RMEILQRAENEFDPIPFDAEAARVYGRLTAAVVAAGRKPRRRTADLMIAATAVAEDLPLF  127

Query  116  TQDD-DFAALD  125
            T +  D+  L+
Sbjct  128  TTNPGDYTGLE  138


>gi|288931927|ref|YP_003435987.1| PilT protein domain protein [Ferroglobus placidus DSM 10642]
 gi|288894175|gb|ADC65712.1| PilT protein domain protein [Ferroglobus placidus DSM 10642]
Length=123

 Score = 53.9 bits (128),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 41/119 (35%), Positives = 57/119 (48%), Gaps = 13/119 (10%)

Query  9    VLDTSVFIATESG--RQLDEALIPDR-VATTVVTLAELRVGVLAAATTDIRAQRLATLES  65
            VLDTSV I    G  + L+  L  D     T +T  E++VG          A +LA L  
Sbjct  3    VLDTSVIIEIARGNRKALNAVLSEDNYFYITSITWFEIKVG----------APKLAELNL  52

Query  66   VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL  124
            V  +E L  D  +A + A + I L + G+ V + DL+I A+  S    +IT D DF  L
Sbjct  53   VDSLECLSFDRKSADVAAEIYIKLKKDGKMVSLKDLFIGAICISNKEKLITMDSDFEIL  111


>gi|260893197|ref|YP_003239294.1| PilT protein domain protein [Ammonifex degensii KC4]
 gi|260865338|gb|ACX52444.1| PilT protein domain protein [Ammonifex degensii KC4]
Length=129

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 36/122 (30%), Positives = 60/122 (50%), Gaps = 10/122 (8%)

Query  9    VLDTSVFIATESG-----RQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL  63
            +LDT++ IA   G     R L +A   ++V    + L EL  G   +   +    R+   
Sbjct  6    LLDTNIVIALFKGDASVRRNLAKA---EKVFIPAIVLGELYYGAYKSGQAERNLSRIE--  60

Query  64   ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAA  123
            E V ++  L  +   AR +  ++  L   GR +  ND+WIAAVA  + L ++T+DD F  
Sbjct  61   EFVGNIAVLACNAGTAREYGVIKNQLRAKGRPIPENDIWIAAVARQQGLVLVTRDDHFGE  120

Query  124  LD  125
            ++
Sbjct  121  VE  122


>gi|344338644|ref|ZP_08769575.1| PilT protein domain protein [Thiocapsa marina 5811]
 gi|343801226|gb|EGV19169.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=129

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 37/120 (31%), Positives = 57/120 (48%), Gaps = 2/120 (1%)

Query  9    VLDTSVFIATESGRQ--LDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV  66
            ++DT+++     G    +D     D +A +VV+L EL  G  A        Q L      
Sbjct  5    LIDTNIYSLAMRGEPDVVDRLQQLDDLAFSVVSLGELLAGFRAGHREAKNRQELGRFLDS  64

Query  67   ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDG  126
              +  L  D++ A  +A + + L  +G  +  ND+WIAAVA    LPV T+D  F A+ G
Sbjct  65   PRVRLLAADEETADFYAAIVVALKRAGTPIPTNDIWIAAVAQRHGLPVYTRDAHFQAVPG  124


>gi|239989892|ref|ZP_04710556.1| PilT domain-containing protein [Streptomyces roseosporus NRRL 
11379]
 gi|291446910|ref|ZP_06586300.1| PIN domain-containing protein [Streptomyces roseosporus NRRL 
15998]
 gi|291349857|gb|EFE76761.1| PIN domain-containing protein [Streptomyces roseosporus NRRL 
15998]
Length=134

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 49/127 (39%), Positives = 67/127 (53%), Gaps = 7/127 (5%)

Query  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL-ESV  66
            GVLDT  +I  +    L+   +P     T V+LAEL+ GV  A    +RA R   L  +V
Sbjct  8    GVLDTCTYIDLD---LLEPERLPVLPVLTAVSLAELQQGVAMAKDPLVRAARTEKLGAAV  64

Query  67   ADMETLPVDDDAARMWARL--RIHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFAA  123
            AD E LP D DAA  +  L   +  A    R R  DL IA++A+ R LP+ T++ DDF  
Sbjct  65   ADFEPLPFDGDAAARYGTLVALVLAARRDPRPRRMDLMIASIASVRGLPLFTRNADDFKG  124

Query  124  LDGAASV  130
            L+   +V
Sbjct  125  LESMVTV  131


>gi|220934242|ref|YP_002513141.1| PilT protein domain-containing protein [Thioalkalivibrio sulfidophilus 
HL-EbGr7]
 gi|219995552|gb|ACL72154.1| PilT protein domain protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length=134

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 41/123 (34%), Positives = 66/123 (54%), Gaps = 7/123 (5%)

Query  9    VLDTSVFIATESGR-QLDEAL--IP-DRVATTVVTLAELRVGVLAAATTDIRAQRLATLE  64
            +LDT++ IA   G  Q+ E L   P   +  + V L EL +GV  +   D  A RLA L 
Sbjct  4    LLDTNILIAAMKGHPQVREHLEVTPLQEIVLSPVVLGELELGVAKSRYRDKNAARLAEL-  62

Query  65   SVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFAA  123
             V  +   P+D + AR +AR+R  L ++G  +  ND WI A A ++ L +++ +  +F+ 
Sbjct  63   -VRGIALQPIDAEVARHYARIRAALEQAGTPIGANDYWITAQALAQELILVSDNVREFSR  121

Query  124  LDG  126
            + G
Sbjct  122  VGG  124


>gi|240171945|ref|ZP_04750604.1| PilT protein-like [Mycobacterium kansasii ATCC 12478]
Length=131

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 48/136 (36%), Positives = 73/136 (54%), Gaps = 17/136 (12%)

Query  7    AGVLDTSVFIATESGRQLDEALI---PDRVATTVVTLAELRVGVLAAATTDIRAQRLATL  63
            +G+LDTSV I        D A++   PD +A + +T+AEL  G L A T    A+R A L
Sbjct  3    SGLLDTSVVIDWH-----DPAIVAALPDEMAISAITVAELAAGPLLATTPIEAARRQARL  57

Query  64   ESV-ADMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-D  119
            + V + +E LP D  A R +  +   +   GR  R R  D+ IAA A +  L + +++ +
Sbjct  58   QEVESRLEPLPFDGAAVRSYGLIVAAVVHEGRKPRSRFADMLIAATAHANGLDLYSRNAE  117

Query  120  DFAALDGAASVEIIRV  135
            DFA L+     ++IRV
Sbjct  118  DFAGLE-----KLIRV  128


>gi|330822406|ref|YP_004362627.1| PIN domain protein [Burkholderia gladioli BSR3]
 gi|327374243|gb|AEA65597.1| PIN domain protein [Burkholderia gladioli BSR3]
Length=136

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 35/98 (36%), Positives = 55/98 (57%), Gaps = 4/98 (4%)

Query  30   PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL  89
            P+ + T+++  AELR GVL   ++ +  QR+  L  +A +  LP+  DA R + RLR  L
Sbjct  31   PEHLCTSIIVAAELRFGVLKRGSSTLE-QRVEQL--LASLPVLPLQADADRCYGRLRAEL  87

Query  90   AESGRRVRINDLWIAAVA-ASRALPVITQDDDFAALDG  126
             + G+ +  ND+ IAA A A  A+ V     +FA + G
Sbjct  88   EKQGQLIGANDMLIAAHALAVEAILVTDNTAEFARVAG  125


>gi|339323400|ref|YP_004682294.1| outer membrane protein [Cupriavidus necator N-1]
 gi|338170008|gb|AEI81062.1| PilT protein domain containing protein [Cupriavidus necator N-1]
Length=133

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 35/101 (35%), Positives = 56/101 (56%), Gaps = 4/101 (3%)

Query  27   ALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLR  86
            AL PD + T+++  AELR G  A   +   +QR+   +++A +  LP+  DA   +  LR
Sbjct  28   ALEPDSLCTSIIVAAELRFGA-AKKGSPALSQRVG--QALAGLGVLPLGGDADACYGELR  84

Query  87   IHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFAALDG  126
              L  SGR +  ND+ IAA A S    ++T +  +F+ +DG
Sbjct  85   AGLERSGRVIGANDMLIAAHALSLGAVLVTDNIGEFSRVDG  125


>gi|309790890|ref|ZP_07685433.1| PilT protein domain protein [Oscillochloris trichoides DG6]
 gi|308227078|gb|EFO80763.1| PilT protein domain protein [Oscillochloris trichoides DG6]
Length=129

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 37/123 (31%), Positives = 62/123 (51%), Gaps = 4/123 (3%)

Query  6    AAGVLDTSVFIATESGRQ--LDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL  63
             + +LDTSV IA     Q  ++  +   ++    + L EL  G L +   +  +Q++  L
Sbjct  3    GSYLLDTSVVIAFLGNDQRIIEYFVQAKQLFLPSIVLGELYYGALRSRKPEENSQQI--L  60

Query  64   ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAA  123
            E  +    L +DD  A+ +A ++  L   GR +  NDLWIAA+A    L + T+D  F  
Sbjct  61   EFGSKNVILAIDDITAQHYAIIKNQLRIKGRPIPENDLWIAAIAMQYQLVIATRDKHFHE  120

Query  124  LDG  126
            ++G
Sbjct  121  IEG  123


>gi|116687254|ref|YP_840500.1| PilT domain-containing protein [Burkholderia cenocepacia HI2424]
 gi|116652969|gb|ABK13607.1| PilT protein domain protein [Burkholderia cenocepacia HI2424]
Length=136

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 31/78 (40%), Positives = 47/78 (61%), Gaps = 3/78 (3%)

Query  30   PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL  89
            P++V T++V  AELR GV    ++ + AQR+  L  +A +  LP+  DA R + RLR  L
Sbjct  31   PEQVCTSIVVAAELRFGVWKRGSSTL-AQRVEQL--LASLTVLPLQPDADRCYGRLRAEL  87

Query  90   AESGRRVRINDLWIAAVA  107
             + G+ +  ND+ IAA A
Sbjct  88   EKQGQLIGANDMLIAAHA  105


>gi|206480017|ref|YP_002235528.1| PIN domain protein [Burkholderia cenocepacia J2315]
 gi|195945173|emb|CAR57804.1| PIN domain protein [Burkholderia cenocepacia J2315]
Length=136

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 31/78 (40%), Positives = 47/78 (61%), Gaps = 3/78 (3%)

Query  30   PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL  89
            P++V T++V  AELR GV    ++ + AQR+  L  +A +  LP+  DA R + RLR  L
Sbjct  31   PEQVCTSIVVAAELRFGVWKRGSSTL-AQRVEQL--LASLTVLPLQPDADRCYGRLRAEL  87

Query  90   AESGRRVRINDLWIAAVA  107
             + G+ +  ND+ IAA A
Sbjct  88   EKQGQLIGANDMLIAAHA  105


>gi|167841609|ref|ZP_02468293.1| PilT protein domain protein [Burkholderia thailandensis MSMB43]
Length=136

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/78 (39%), Positives = 47/78 (61%), Gaps = 3/78 (3%)

Query  30   PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL  89
            P++V T+++  AELR GV    ++ + AQR+  L  +A +  LP+  DA R + RLR  L
Sbjct  31   PEQVCTSIIVAAELRFGVWKRGSSTL-AQRVEQL--LASLTVLPLQPDADRCYGRLRAEL  87

Query  90   AESGRRVRINDLWIAAVA  107
             + G+ +  ND+ IAA A
Sbjct  88   EKQGQLIGANDMLIAAHA  105


>gi|227358132|ref|ZP_03842473.1| nucleic acid-binding protein [Proteus mirabilis ATCC 29906]
 gi|227161468|gb|EEI46505.1| nucleic acid-binding protein [Proteus mirabilis ATCC 29906]
Length=141

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 43/126 (35%), Positives = 68/126 (54%), Gaps = 13/126 (10%)

Query  9    VLDTSVFIATESGRQLDEALIP------DRVATTVVTLAELRVGVLAAATTDIRAQRLAT  62
            +LDT++ I T   +   E L+P      +++A + +TLAEL  G   +      A+ LAT
Sbjct  5    LLDTNIVIFTIKRKP--EFLLPKFNQHAEQLAISTITLAELIFGAEKSVNP---AKNLAT  59

Query  63   LES-VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDD-D  120
            +   V+ +  L  DD AA  +  +R  L + G+R+  NDL IAA A S+ L V+T +  +
Sbjct  60   VNDFVSRLTVLSYDDLAAFHYGDIRATLEKQGKRIGDNDLHIAAHARSKGLIVVTNNTRE  119

Query  121  FAALDG  126
            F  +DG
Sbjct  120  FERVDG  125


>gi|148262123|ref|YP_001228829.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146395623|gb|ABQ24256.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=146

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 36/130 (28%), Positives = 62/130 (48%), Gaps = 17/130 (13%)

Query  9    VLDTSVFIATESGRQLDEALIP---------DRVATTVVTLAELRVGVLAAATTDIRAQR  59
            ++DT ++I  E G      L P         + V  + VT+AEL+ G   A T D+R +R
Sbjct  4    LIDTCIWIDVERG-----TLAPADVAAVTGEEPVYLSPVTIAELKFGAENAKTADLRQKR  58

Query  60   LATLESVADMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQ  117
            LA L  +     L +D+    ++  +   + + G+  + R+ DLW+A+ A       +T 
Sbjct  59   LAALTRLKRKPLLMIDETTGEIFGDIAAQIRKHGKQHQYRVQDLWLASQAVQHGFRFLTH  118

Query  118  D-DDFAALDG  126
            +  DFA + G
Sbjct  119  NRKDFADIPG  128


>gi|256828120|ref|YP_003156848.1| twitching motility protein PilT [Desulfomicrobium baculatum DSM 
4028]
 gi|256577296|gb|ACU88432.1| PilT protein domain protein [Desulfomicrobium baculatum DSM 4028]
Length=128

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 30/123 (25%), Positives = 54/123 (44%), Gaps = 8/123 (6%)

Query  9    VLDTSVFIATESGRQLDEALI-----PDRVATTVVTLAELRVGVLAAATTDIRAQRLATL  63
            ++DT+++     G   D+ LI      + +  + ++L EL  G       +   + L   
Sbjct  5    LIDTNIYSGALRG---DQELIRVLRGAEHIGLSAISLGELFSGFKGGNREEENKRELGIF  61

Query  64   ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAA  123
                 +   PVD+  A  +  +   L  SG  +  ND+WIAA+A      + TQD  F+ 
Sbjct  62   LDSPRVALYPVDEYTAEHYCSILDQLRRSGTPIPTNDIWIAAIAFQHGFALFTQDRQFSK  121

Query  124  LDG  126
            ++G
Sbjct  122  IEG  124


>gi|304311489|ref|YP_003811087.1| Predicted nucleic acid-binding protein, contains PIN domain [gamma 
proteobacterium HdN1]
 gi|301797222|emb|CBL45442.1| Predicted nucleic acid-binding protein, contains PIN domain [gamma 
proteobacterium HdN1]
Length=142

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 46/120 (39%), Positives = 62/120 (52%), Gaps = 11/120 (9%)

Query  9    VLDTSVF---IATESGRQLDEALIPDRVATTV----VTLAELRVGVLA---AATTDIRAQ  58
            VLDT+V    +  E  + +  A + D+VA T+    VTLAEL  G+ A       ++ AQ
Sbjct  3    VLDTNVVSEAMKPEPHKAV-RAWLNDQVAETLYLSSVTLAELLFGIAALPAGKRKNMLAQ  61

Query  59   RLATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQD  118
             L  L  +     LP D DAAR +A L +    SGR     D +IAA+AASR   V T+D
Sbjct  62   SLDGLTGLFKDRVLPFDTDAARHYAELAVIAKTSGRGFPTPDGYIAAIAASRDFIVATRD  121


>gi|262369246|ref|ZP_06062574.1| virulence associated protein VapC [Acinetobacter johnsonii SH046]
 gi|262315314|gb|EEY96353.1| virulence associated protein VapC [Acinetobacter johnsonii SH046]
Length=139

 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 38/126 (31%), Positives = 67/126 (54%), Gaps = 11/126 (8%)

Query  9    VLDTSVFIAT-----ESGRQLDEALIPDR-VATTVVTLAELRVGVLAAATTDIRAQRLAT  62
            +LDT++ I       E  RQ  E  +P R +  +V+TL ELR G   A  +  + + L  
Sbjct  6    LLDTNICIYIIKHQPEIVRQHFEKHLPHRNILISVITLGELRFG---AEKSQQKEKALKV  62

Query  63   LESVADM-ETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVA-ASRALPVITQDDD  120
            ++ +  M + + +D+  A  +A++R  L+  G+ +  NDLW+AA A A+  + V   + +
Sbjct  63   IDELTSMIQVVELDEYVADHYAQIRHDLSSKGQIIGANDLWLAAHARANNWVMVTNNEKE  122

Query  121  FAALDG  126
            F  +DG
Sbjct  123  FLRVDG  128



Lambda     K      H
   0.320    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129391415580




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40