BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0627
Length=135
Score E
Sequences producing significant alignments: (Bits) Value
gi|194320087|pdb|3DBO|B Chain B, Crystal Structure Of A Member O... 256 1e-66
gi|15607767|ref|NP_215141.1| hypothetical protein Rv0627 [Mycoba... 254 3e-66
gi|41408125|ref|NP_960961.1| hypothetical protein MAP2027c [Myco... 218 2e-55
gi|254820582|ref|ZP_05225583.1| hypothetical protein MintA_11676... 216 7e-55
gi|254774872|ref|ZP_05216388.1| hypothetical protein MaviaA2_093... 208 2e-52
gi|289749125|ref|ZP_06508503.1| conserved hypothetical protein [... 203 9e-51
gi|284046267|ref|YP_003396607.1| PilT protein domain protein [Co... 87.8 5e-16
gi|340625625|ref|YP_004744077.1| hypothetical protein MCAN_06011... 81.3 4e-14
gi|15607735|ref|NP_215109.1| hypothetical protein Rv0595c [Mycob... 81.3 5e-14
gi|15839998|ref|NP_335035.1| hypothetical protein MT0625 [Mycoba... 80.9 5e-14
gi|289756674|ref|ZP_06516052.1| conserved hypothetical protein [... 80.9 6e-14
gi|145595623|ref|YP_001159920.1| PilT domain-containing protein ... 72.8 2e-11
gi|340625683|ref|YP_004744135.1| hypothetical protein MCAN_06641... 72.4 2e-11
gi|336179974|ref|YP_004585349.1| PilT protein domain-containing ... 69.7 1e-10
gi|288917699|ref|ZP_06412062.1| PilT protein domain protein [Fra... 69.7 1e-10
gi|158312409|ref|YP_001504917.1| PilT domain-containing protein ... 69.7 1e-10
gi|240169379|ref|ZP_04748038.1| hypothetical protein MkanA1_0870... 67.4 7e-10
gi|86742786|ref|YP_483186.1| PilT protein-like protein [Frankia ... 67.0 8e-10
gi|302560132|ref|ZP_07312474.1| PIN family toxin-antitoxin syste... 63.2 1e-08
gi|284045166|ref|YP_003395506.1| PilT protein domain protein [Co... 61.2 4e-08
gi|291439037|ref|ZP_06578427.1| PilT protein domain-containing p... 61.2 5e-08
gi|326778702|ref|ZP_08237967.1| PilT protein domain protein [Str... 61.2 5e-08
gi|318060958|ref|ZP_07979679.1| PilT protein-like protein [Strep... 60.8 7e-08
gi|288916357|ref|ZP_06410736.1| PilT protein domain protein [Fra... 60.8 7e-08
gi|256372766|ref|YP_003110590.1| hypothetical protein Afer_2016 ... 60.5 8e-08
gi|329941279|ref|ZP_08290558.1| PilT protein domain protein [Str... 59.7 1e-07
gi|302036027|ref|YP_003796349.1| putative PilT-like protein [Can... 59.3 2e-07
gi|297159809|gb|ADI09521.1| PilT-like protein [Streptomyces bing... 58.9 2e-07
gi|15607805|ref|NP_215179.1| hypothetical protein Rv0665 [Mycoba... 56.6 1e-06
gi|116619645|ref|YP_821801.1| PilT domain-containing protein [Ca... 56.2 1e-06
gi|94265566|ref|ZP_01289311.1| PilT protein-like [delta proteoba... 55.1 3e-06
gi|339498750|ref|YP_004696785.1| PilT protein domain-containing ... 55.1 3e-06
gi|86738864|ref|YP_479264.1| PilT protein-like protein [Frankia ... 54.3 6e-06
gi|288931927|ref|YP_003435987.1| PilT protein domain protein [Fe... 53.9 7e-06
gi|260893197|ref|YP_003239294.1| PilT protein domain protein [Am... 53.9 8e-06
gi|344338644|ref|ZP_08769575.1| PilT protein domain protein [Thi... 53.5 1e-05
gi|239989892|ref|ZP_04710556.1| PilT domain-containing protein [... 53.1 1e-05
gi|220934242|ref|YP_002513141.1| PilT protein domain-containing ... 52.8 2e-05
gi|240171945|ref|ZP_04750604.1| PilT protein-like [Mycobacterium... 52.8 2e-05
gi|330822406|ref|YP_004362627.1| PIN domain protein [Burkholderi... 52.8 2e-05
gi|339323400|ref|YP_004682294.1| outer membrane protein [Cupriav... 52.4 2e-05
gi|309790890|ref|ZP_07685433.1| PilT protein domain protein [Osc... 52.0 3e-05
gi|116687254|ref|YP_840500.1| PilT domain-containing protein [Bu... 52.0 3e-05
gi|206480017|ref|YP_002235528.1| PIN domain protein [Burkholderi... 52.0 3e-05
gi|167841609|ref|ZP_02468293.1| PilT protein domain protein [Bur... 51.6 4e-05
gi|227358132|ref|ZP_03842473.1| nucleic acid-binding protein [Pr... 51.6 4e-05
gi|148262123|ref|YP_001228829.1| PilT domain-containing protein ... 51.2 5e-05
gi|256828120|ref|YP_003156848.1| twitching motility protein PilT... 50.8 6e-05
gi|304311489|ref|YP_003811087.1| Predicted nucleic acid-binding ... 50.8 6e-05
gi|262369246|ref|ZP_06062574.1| virulence associated protein Vap... 50.8 7e-05
>gi|194320087|pdb|3DBO|B Chain B, Crystal Structure Of A Member Of The Vapbc Family Of
Toxin- Antitoxin Systems, Vapbc-5, From Mycobacterium Tuberculosis
Length=150
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Query 1 VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL 60
VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL
Sbjct 16 VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL 75
Query 61 ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD 120
ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD
Sbjct 76 ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD 135
Query 121 FAALDGAASVEIIRV 135
FAALDGAASVEIIRV
Sbjct 136 FAALDGAASVEIIRV 150
>gi|15607767|ref|NP_215141.1| hypothetical protein Rv0627 [Mycobacterium tuberculosis H37Rv]
gi|31791809|ref|NP_854302.1| hypothetical protein Mb0643 [Mycobacterium bovis AF2122/97]
gi|121636546|ref|YP_976769.1| hypothetical protein BCG_0673 [Mycobacterium bovis BCG str. Pasteur
1173P2]
74 more sequence titles
Length=135
Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Query 1 VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL 60
+STTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL
Sbjct 1 MSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL 60
Query 61 ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD 120
ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD
Sbjct 61 ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD 120
Query 121 FAALDGAASVEIIRV 135
FAALDGAASVEIIRV
Sbjct 121 FAALDGAASVEIIRV 135
>gi|41408125|ref|NP_960961.1| hypothetical protein MAP2027c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396480|gb|AAS04344.1| hypothetical protein MAP_2027c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461800|gb|EGO40658.1| putative nucleic acid-binding protein, contains PIN domain [Mycobacterium
avium subsp. paratuberculosis S397]
Length=135
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/131 (84%), Positives = 121/131 (93%), Gaps = 0/131 (0%)
Query 5 PAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLE 64
PAAGVLDTSVFIA+ESGRQLDEA IPD VATTVVTLAEL GVLAA T+++RAQRLATLE
Sbjct 5 PAAGVLDTSVFIASESGRQLDEARIPDEVATTVVTLAELHAGVLAATTSNVRAQRLATLE 64
Query 65 SVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL 124
S+ADME LPVDDDA RMWARLRIHLAE+GRR+R NDLWIAA+AASR LPV+TQDDDFAAL
Sbjct 65 SIADMEMLPVDDDAVRMWARLRIHLAEAGRRMRANDLWIAAIAASRGLPVVTQDDDFAAL 124
Query 125 DGAASVEIIRV 135
DGAA++ IIRV
Sbjct 125 DGAANLAIIRV 135
>gi|254820582|ref|ZP_05225583.1| hypothetical protein MintA_11676 [Mycobacterium intracellulare
ATCC 13950]
Length=135
Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/135 (82%), Positives = 123/135 (92%), Gaps = 0/135 (0%)
Query 1 VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRL 60
+S AGVLDTSVFIATESGR LD ALIPD+V TTVVTLAEL VGVLAA+T+DIRAQRL
Sbjct 1 MSNPQVAGVLDTSVFIATESGRPLDAALIPDQVGTTVVTLAELHVGVLAASTSDIRAQRL 60
Query 61 ATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDD 120
ATLES+AD+E LPVDDDAARMWARLRIHLAE+G+RVRINDLWIAA+AASR LPV+TQDDD
Sbjct 61 ATLESIADIEALPVDDDAARMWARLRIHLAETGQRVRINDLWIAAIAASRGLPVVTQDDD 120
Query 121 FAALDGAASVEIIRV 135
FA LDGAA++ +IRV
Sbjct 121 FAVLDGAANLTVIRV 135
>gi|254774872|ref|ZP_05216388.1| hypothetical protein MaviaA2_09395 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=127
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/127 (82%), Positives = 116/127 (92%), Gaps = 0/127 (0%)
Query 9 VLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVAD 68
+LDTSVFIA+ESGR LDEA IPD VATTV+TLAEL GVLAA T+D+RAQRLATLES+AD
Sbjct 1 MLDTSVFIASESGRHLDEARIPDEVATTVITLAELHAGVLAATTSDVRAQRLATLESIAD 60
Query 69 METLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAA 128
ME LPVDDDAARMWARLRIHLAE+GRR+R NDLWIA +AASR LPV+TQDDDFAALDGAA
Sbjct 61 MEMLPVDDDAARMWARLRIHLAEAGRRMRANDLWIAGIAASRGLPVVTQDDDFAALDGAA 120
Query 129 SVEIIRV 135
++ IIRV
Sbjct 121 NLAIIRV 127
>gi|289749125|ref|ZP_06508503.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689712|gb|EFD57141.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=108
Score = 203 bits (516), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/108 (99%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 28 LIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRI 87
+IPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRI
Sbjct 1 MIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRI 60
Query 88 HLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV 135
HLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV
Sbjct 61 HLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV 108
>gi|284046267|ref|YP_003396607.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283950488|gb|ADB53232.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=127
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/116 (50%), Positives = 73/116 (63%), Gaps = 3/116 (2%)
Query 11 DTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV-ADM 69
DTSVF+A ESGR L E +PDR+A +VVT AEL +GVL A RA+RL TL V +
Sbjct 7 DTSVFVAQESGRTLGE--LPDRIAVSVVTAAELELGVLRARDAATRARRLNTLARVRSAY 64
Query 70 ETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD 125
LP+D + A +A + GRR+R +D+WIAA A +PV+TQD DF A D
Sbjct 65 PLLPIDAETASCFAGIADEELGQGRRLRRHDVWIAATALRHGVPVVTQDADFTAFD 120
>gi|340625625|ref|YP_004744077.1| hypothetical protein MCAN_06011 [Mycobacterium canettii CIPT
140010059]
gi|340003815|emb|CCC42941.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=130
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)
Query 11 DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES 65
DTSVFI E+ R PDR A +VVTL ELR+GVL A+ + A+RL+T +
Sbjct 9 DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 63
Query 66 VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD 125
E L +D+ + WA L L + RV IND WIAA A + + ++TQD+D+AA+
Sbjct 64 AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAIVTQDNDYAAM- 122
Query 126 GAASVEIIRV 135
VE+I +
Sbjct 123 --PDVEVITI 130
>gi|15607735|ref|NP_215109.1| hypothetical protein Rv0595c [Mycobacterium tuberculosis H37Rv]
gi|31791777|ref|NP_854270.1| hypothetical protein Mb0611c [Mycobacterium bovis AF2122/97]
gi|121636513|ref|YP_976736.1| hypothetical protein BCG_0641c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
47 more sequence titles
Length=130
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)
Query 11 DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES 65
DTSVFI E+ R PDR A +VVTL ELR+GVL A+ + A+RL+T +
Sbjct 9 DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 63
Query 66 VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD 125
E L +D+ + WA L L + RV IND WIAA A + + ++TQD+D+AA+
Sbjct 64 AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM- 122
Query 126 GAASVEIIRV 135
VE+I +
Sbjct 123 --PDVEVITI 130
>gi|15839998|ref|NP_335035.1| hypothetical protein MT0625 [Mycobacterium tuberculosis CDC1551]
gi|167969018|ref|ZP_02551295.1| hypothetical protein MtubH3_13717 [Mycobacterium tuberculosis
H37Ra]
gi|254230934|ref|ZP_04924261.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
27 more sequence titles
Length=131
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 74/130 (57%), Gaps = 13/130 (10%)
Query 11 DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES 65
DTSVFI E+ R PDR A +VVTL ELR+GVL A+ + A+RL+T +
Sbjct 10 DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 64
Query 66 VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALD 125
E L +D+ + WA L L + RV IND WIAA A + + ++TQD+D+AA+
Sbjct 65 AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM- 123
Query 126 GAASVEIIRV 135
VE+I +
Sbjct 124 --PDVEVITI 131
>gi|289756674|ref|ZP_06516052.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289712238|gb|EFD76250.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=130
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/119 (43%), Positives = 69/119 (58%), Gaps = 10/119 (8%)
Query 11 DTSVFIATESGRQLDEALIPDRVA-----TTVVTLAELRVGVLAAATTDIRAQRLATLES 65
DTSVFI E+ R PDR A +VVTL ELR+GVL A+ + A+RL+T +
Sbjct 9 DTSVFIGIEATR-----FDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL 63
Query 66 VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL 124
E L +D+ + WA L L + RV IND WIAA A + + ++TQD+D+AA+
Sbjct 64 AQRFEPLGIDEAVSEAWALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAM 122
>gi|145595623|ref|YP_001159920.1| PilT domain-containing protein [Salinispora tropica CNB-440]
gi|145304960|gb|ABP55542.1| PilT protein domain protein [Salinispora tropica CNB-440]
Length=127
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/122 (46%), Positives = 73/122 (60%), Gaps = 10/122 (8%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA 67
G+LDTS+ IAT D IP +A +V +LAEL+ GVLAA T D RA RLA L ++
Sbjct 4 GILDTSILIAT------DVTPIPGELAISVTSLAELQFGVLAAKTADARAGRLARLSAIQ 57
Query 68 -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA 123
+ LP+D+ A +ARL + E GR R R+ DL IAA A + V T++ DDFA
Sbjct 58 RRFDPLPIDEAVADSYARLAARVVEIGRQPRARVMDLLIAATAHAHDAAVYTRNADDFAG 117
Query 124 LD 125
L+
Sbjct 118 LE 119
>gi|340625683|ref|YP_004744135.1| hypothetical protein MCAN_06641 [Mycobacterium canettii CIPT
140010059]
gi|340003873|emb|CCC43004.1| putative uncharacterized protein mb0684 [Mycobacterium canettii
CIPT 140010059]
Length=137
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/116 (41%), Positives = 69/116 (60%), Gaps = 4/116 (3%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA 67
G+LDTSVFIA ESG + + +P+RVA +V+T+ EL++GVL A + R++R TL
Sbjct 9 GLLDTSVFIARESGGAIAD--LPERVALSVMTIGELQLGVLNAGDSATRSRRADTLALAR 66
Query 68 DMETLPVDDDAARMWARLRIHLAESG--RRVRINDLWIAAVAASRALPVITQDDDF 121
+ +PV + ARL +G R V++ D IAA A LP++T+D DF
Sbjct 67 TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAIEHGLPLVTRDADF 122
>gi|336179974|ref|YP_004585349.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334860954|gb|AEH11428.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=127
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/122 (43%), Positives = 70/122 (58%), Gaps = 10/122 (8%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA 67
G+LDTSV +AT D A IP +A +V+++AEL+ GVL A T + RA RLA L ++
Sbjct 4 GILDTSVLVAT------DVAPIPGELAVSVISIAELQFGVLVARTPEARANRLARLSALQ 57
Query 68 -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA 123
+ LPVDD A + RL + E GR R R DL IAA A + V T++ D A
Sbjct 58 RRFDPLPVDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRNAADLAG 117
Query 124 LD 125
L+
Sbjct 118 LE 119
>gi|288917699|ref|ZP_06412062.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288350914|gb|EFC85128.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=127
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/114 (43%), Positives = 66/114 (58%), Gaps = 9/114 (7%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA 67
G+LDTSV +AT D A IP +A +V+++AEL GVL A T++ RA RLA L ++
Sbjct 4 GILDTSVLVAT------DVAPIPGELAISVISIAELHFGVLVAKTSETRANRLARLSALQ 57
Query 68 -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD 118
+ LP+DD A + RL + E GR R R DL IAA A + V T++
Sbjct 58 RRFDPLPLDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAHAHEASVYTRN 111
>gi|158312409|ref|YP_001504917.1| PilT domain-containing protein [Frankia sp. EAN1pec]
gi|158107814|gb|ABW10011.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=127
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/122 (41%), Positives = 69/122 (57%), Gaps = 10/122 (8%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA 67
GVLDTSV +AT D IP +A +V+++AEL+ G+L A T RA RLA L ++
Sbjct 4 GVLDTSVLVAT------DVTPIPGELAVSVISIAELQFGILVAKTPQARATRLARLSTIQ 57
Query 68 -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA 123
+ LP+DD A + RL + E+GR R R DL IAA A + + T++ D A
Sbjct 58 RRFDPLPIDDAVADSYGRLAARVVEAGRQPRARTMDLLIAATAHAHGASIYTRNAADLAG 117
Query 124 LD 125
L+
Sbjct 118 LE 119
>gi|240169379|ref|ZP_04748038.1| hypothetical protein MkanA1_08703 [Mycobacterium kansasii ATCC
12478]
Length=126
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/96 (41%), Positives = 56/96 (59%), Gaps = 3/96 (3%)
Query 38 VTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHLAESGRRVR 97
+TL ELR+GVL A + A+RL+T + E L VD+ + WA L L + R
Sbjct 32 LTLGELRLGVLQAPGPEAAARRLSTYQLAQRFEPLSVDERVSEAWALLVSKLRAAHLREP 91
Query 98 INDLWIAAVAASRALPVITQDDDFAALDGAASVEII 133
IND WIAA A + +P++TQD D++A+ VE+I
Sbjct 92 INDSWIAATAVAHQIPIVTQDGDYSAV---PDVEVI 124
>gi|86742786|ref|YP_483186.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86569648|gb|ABD13457.1| PilT protein-like [Frankia sp. CcI3]
Length=127
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/122 (41%), Positives = 68/122 (56%), Gaps = 10/122 (8%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA 67
GVLDTSV +AT D +P +A +V+++AEL+ G+L A T RA RLA L ++
Sbjct 4 GVLDTSVLVAT------DVTPLPGELAVSVISIAELQFGILVARTPQARATRLARLSAIQ 57
Query 68 -DMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-DDFAA 123
+ LPVDD A + RL + E GR R R DL IAA A + + T++ D A
Sbjct 58 RRFDPLPVDDAVADSYGRLAARVVEVGRQPRARTMDLLIAATAHAHGASIYTRNAADLAG 117
Query 124 LD 125
L+
Sbjct 118 LE 119
>gi|302560132|ref|ZP_07312474.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
griseoflavus Tu4000]
gi|302477750|gb|EFL40843.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
griseoflavus Tu4000]
Length=155
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/136 (36%), Positives = 72/136 (53%), Gaps = 16/136 (11%)
Query 3 TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTD-------- 54
+T G+LDT++ I R +D +PD +A T +TLAEL G D
Sbjct 6 STHQQGLLDTNIMILR---RWVDPEELPDEMAITAITLAELSAGPHEVRRNDEQSSYDEH 62
Query 55 -IRAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR 110
RA+RL L+ + + +P D +AAR++ R+ + +GR R R+ DL IAA+A +
Sbjct 63 AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRVADLMIAAIAVAE 122
Query 111 ALPVITQD-DDFAALD 125
LP+ T + DDF LD
Sbjct 123 NLPLFTTNPDDFKGLD 138
>gi|284045166|ref|YP_003395506.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283949387|gb|ADB52131.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=139
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/123 (43%), Positives = 62/123 (51%), Gaps = 6/123 (4%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV- 66
GVLDTS I R +D +P T VTLAEL VG L A+ RA R A L+
Sbjct 8 GVLDTSTVILLP--RIVDPQTLPVEPLITAVTLAELSVGPLVASDERERAARQAHLQQAE 65
Query 67 ADMETLPVDDDAARMWARLRIHLAESGRR--VRINDLWIAAVAASRALPVITQD-DDFAA 123
AD LP D AAR + R+ L GR+ R D IAA A + LPV T + DF
Sbjct 66 ADFVPLPFDAAAARAFGRVAASLRRDGRKPAARSYDAMIAATALANELPVYTANPSDFRG 125
Query 124 LDG 126
+DG
Sbjct 126 IDG 128
>gi|291439037|ref|ZP_06578427.1| PilT protein domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
gi|291341932|gb|EFE68888.1| PilT protein domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
Length=155
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/136 (36%), Positives = 71/136 (53%), Gaps = 16/136 (11%)
Query 3 TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI------- 55
+T G+LDT++ I R + +PD +A T +TLAEL G D
Sbjct 6 STHQQGLLDTNIMILR---RWVAPEELPDEMAITAITLAELSAGPHEVRRNDEQSSYDEH 62
Query 56 --RAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR 110
RA+RL L+ + + +P D +AAR++ R+ + SGR R R+ DL IAA+A +
Sbjct 63 AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISSGRKPRRRVADLMIAAIAVAE 122
Query 111 ALPVITQD-DDFAALD 125
LP+ T + DDF LD
Sbjct 123 NLPLFTTNPDDFKGLD 138
>gi|326778702|ref|ZP_08237967.1| PilT protein domain protein [Streptomyces cf. griseus XylebKG-1]
gi|326659035|gb|EGE43881.1| PilT protein domain protein [Streptomyces griseus XylebKG-1]
Length=155
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/136 (36%), Positives = 71/136 (53%), Gaps = 16/136 (11%)
Query 3 TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI------- 55
+T G+LDT++ I R + +PD VA T +TLAEL G D
Sbjct 6 STYKQGLLDTNIMILR---RWVVPEELPDEVAITAITLAELSAGPHEVRRNDEQSGYDEH 62
Query 56 --RAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR 110
RA+RL L+ + + +P D +AAR++ R+ + +GR R R+ DL IAA+A +
Sbjct 63 AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRVADLMIAAIAVAE 122
Query 111 ALPVITQD-DDFAALD 125
LP+ T + DDF LD
Sbjct 123 GLPLFTTNPDDFKGLD 138
>gi|318060958|ref|ZP_07979679.1| PilT protein-like protein [Streptomyces sp. SA3_actG]
gi|318077121|ref|ZP_07984453.1| PilT protein-like protein [Streptomyces sp. SA3_actF]
Length=155
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/134 (36%), Positives = 71/134 (53%), Gaps = 16/134 (11%)
Query 6 AAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI---------R 56
A G+LDT++ I + + +PD +A T VTLAEL G + R
Sbjct 9 AQGLLDTNIMILR---KWVAPEELPDEMAITSVTLAELSAGPHEVRRNEEQGDYDEHAER 65
Query 57 AQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALP 113
A+RL L+ + + +P D +AAR++ R+ + +GR R R+ DL IAA+A + LP
Sbjct 66 ARRLDVLQRAENEFDPIPFDAEAARVYGRICAAVISAGRKPRRRVADLMIAAIAVAEGLP 125
Query 114 VITQD-DDFAALDG 126
+ T + DDF LDG
Sbjct 126 LFTTNPDDFKGLDG 139
>gi|288916357|ref|ZP_06410736.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288352336|gb|EFC86534.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=155
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 16/131 (12%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTD---------IRAQ 58
G+LDT++ I R +D A +PD +A + VTLAEL G D RA+
Sbjct 9 GLLDTNILILR---RWIDPAELPDEMAISAVTLAELSAGPHQVRRNDDQDLYDEHEERAR 65
Query 59 RLATLESVAD-METLPVDDDAARMWARLRIHLAESGRRV--RINDLWIAAVAASRALPVI 115
R+ TL+ + + +P D +AAR++ RL + +GRR R+ DL IAA A + +LP+
Sbjct 66 RMETLQRAENEFDPIPFDAEAARVYGRLSAAVVAAGRRPRRRVADLMIAATAITESLPLF 125
Query 116 TQDD-DFAALD 125
T + D+ L+
Sbjct 126 TTNPGDYVGLE 136
>gi|256372766|ref|YP_003110590.1| hypothetical protein Afer_2016 [Acidimicrobium ferrooxidans DSM
10331]
gi|256009350|gb|ACU54917.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM
10331]
Length=112
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query 9 VLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVAD 68
+LDTS F+ATESGR L +VVT+AEL +GVL A D R R+ATL +V
Sbjct 4 LLDTSFFVATESGRPLGAMEGVTDTEVSVVTVAELTLGVLMANDDD-RPARVATLSAVES 62
Query 69 M-ETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVA 107
+ LPVD + AR +AR+ L RRV I D+ +AA A
Sbjct 63 TWDPLPVDAEVARQFARVAAVLHAERRRVPILDVLVAATA 102
>gi|329941279|ref|ZP_08290558.1| PilT protein domain protein [Streptomyces griseoaurantiacus M045]
gi|329299810|gb|EGG43709.1| PilT protein domain protein [Streptomyces griseoaurantiacus M045]
Length=155
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/136 (35%), Positives = 71/136 (53%), Gaps = 16/136 (11%)
Query 3 TTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI------- 55
+T G+LDT++ I R + +PD +A T +TLAEL G D
Sbjct 6 STHQQGLLDTNIMILR---RWVAPEELPDEMAITAITLAELSAGPHEVRRNDEQSSYDEH 62
Query 56 --RAQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASR 110
RA+RL L+ + + +P D +AAR++ R+ + +GR R R+ DL IAA+A +
Sbjct 63 AERARRLDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRVADLMIAAIAVAE 122
Query 111 ALPVITQD-DDFAALD 125
LP+ T + DDF LD
Sbjct 123 NLPLFTTNPDDFKGLD 138
>gi|302036027|ref|YP_003796349.1| putative PilT-like protein [Candidatus Nitrospira defluvii]
gi|300604091|emb|CBK40423.1| putative PilT-like protein, containing PIN domain [Candidatus
Nitrospira defluvii]
Length=135
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (32%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query 9 VLDTSVFIATESGRQLDEALIP--DRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV 66
+LD+S +IA + +I + + + + L ELR G L A D + L
Sbjct 5 LLDSSAYIAFKKRHPAVTEIISQAELIFMSPIVLGELRAGFLQGAKRDRNERELQLFLHS 64
Query 67 ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL 124
+ L +D + + +A +R+ L ++G V +NDLWIAA A LPV+T D DF +
Sbjct 65 PRIRVLALDAETSDRYALIRVTLKKAGTPVAVNDLWIAASAMQHGLPVLTSDRDFQKI 122
>gi|297159809|gb|ADI09521.1| PilT-like protein [Streptomyces bingchenggensis BCW-1]
Length=152
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/138 (35%), Positives = 73/138 (53%), Gaps = 16/138 (11%)
Query 6 AAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDI---------R 56
A G+LDT++ I + L+ +P VA + +TLAEL G + R
Sbjct 6 AQGLLDTNIMILR---KWLNPDELPAEVAISAITLAELSAGPHEVRRNEEQDDYDEHAER 62
Query 57 AQRLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALP 113
A+R+ L+ + + +P D +AAR++ R+ + +GR R RI DL IAAVA + LP
Sbjct 63 ARRMDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRIADLMIAAVAIAEDLP 122
Query 114 VITQD-DDFAALDGAASV 130
+ T + DDF LDG +V
Sbjct 123 LFTTNPDDFKGLDGLLTV 140
>gi|15607805|ref|NP_215179.1| hypothetical protein Rv0665 [Mycobacterium tuberculosis H37Rv]
gi|15840068|ref|NP_335105.1| hypothetical protein MT0693 [Mycobacterium tuberculosis CDC1551]
gi|31791849|ref|NP_854342.1| hypothetical protein Mb0684 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=112
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/102 (40%), Positives = 60/102 (59%), Gaps = 4/102 (3%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA 67
G+LDTSVFIA ESG + + +P+RVA +V+T+ EL++G+L A + R++R TL
Sbjct 9 GLLDTSVFIARESGGAIAD--LPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALAR 66
Query 68 DMETLPVDDDAARMWARLRIHLAESG--RRVRINDLWIAAVA 107
+ +PV + ARL +G R V++ D IAA A
Sbjct 67 TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA 108
>gi|116619645|ref|YP_821801.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116222807|gb|ABJ81516.1| PilT protein domain protein [Candidatus Solibacter usitatus Ellin6076]
Length=125
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/115 (34%), Positives = 61/115 (54%), Gaps = 4/115 (3%)
Query 9 VLDTSVFIATESGRQLDEALIP--DRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV 66
+LDT+ A G L E ++ +A V+ L E R G+ A + IR ++ + V
Sbjct 2 ILDTNGLSAIADGDPLLEPILARASELALPVIVLGEYRYGI-AQSRNRIRYEKWLK-DLV 59
Query 67 ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDF 121
++ L VDD A +A LR L G + ND+WIAA+A ++PVI++D+ F
Sbjct 60 SNCRVLNVDDATAAEYAILRSELKRGGSPIPANDVWIAALARQHSMPVISRDEHF 114
>gi|94265566|ref|ZP_01289311.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93453895|gb|EAT04250.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=136
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/120 (29%), Positives = 55/120 (46%), Gaps = 2/120 (1%)
Query 9 VLDTSVFIATESGRQLDEALI--PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV 66
+LDT+ ++A + L +I D + + L EL G + + L
Sbjct 5 LLDTNFYVAFKRNTPLAAEIIRRADYIGLNTIVLGELLAGFRCGGRETVNRRELDQFIDS 64
Query 67 ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDG 126
+E L +D++ +AR+ L E GR + NDLWIAA A L + + D F+ +DG
Sbjct 65 PRVELLDIDEETTEFYARVFRALKEKGRPIPTNDLWIAASALRHGLALASFDAHFSYIDG 124
>gi|339498750|ref|YP_004696785.1| PilT protein domain-containing protein [Spirochaeta caldaria
DSM 7334]
gi|338833099|gb|AEJ18277.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/124 (29%), Positives = 69/124 (56%), Gaps = 8/124 (6%)
Query 9 VLDTSV--FIATESGRQLDEAL---IPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL 63
+LDT++ FI + +Q+ + L I + + +T+AEL GV + +I ++ +
Sbjct 3 LLDTNICIFIKNKKPKQVLDHLHQVINQNLYISSITVAELYFGVFN--SQNIEKNHISLV 60
Query 64 ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFA 122
E +A + L DD+ A+ + R+R L + G+ + D+ IAA A ++ L ++T + ++F
Sbjct 61 EFLAPFKILDFDDEDAKEFGRIRSKLKKEGKLIGPYDMQIAAQAIAKKLILVTNNTNEFI 120
Query 123 ALDG 126
+DG
Sbjct 121 RVDG 124
>gi|86738864|ref|YP_479264.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86565726|gb|ABD09535.1| PilT protein-like [Frankia sp. CcI3]
Length=157
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/131 (35%), Positives = 69/131 (53%), Gaps = 16/131 (12%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTD---------IRAQ 58
G+LDT++ I R ++ A +PD +A +VVTLAEL G D RA+
Sbjct 11 GLLDTNILILR---RWVNVAELPDEMAISVVTLAELSAGPHQVRRNDEQDLYDEHEERAR 67
Query 59 RLATLESVAD-METLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVI 115
R+ L+ + + +P D +AAR++ RL + +GR R R DL IAA A + LP+
Sbjct 68 RMEILQRAENEFDPIPFDAEAARVYGRLTAAVVAAGRKPRRRTADLMIAATAVAEDLPLF 127
Query 116 TQDD-DFAALD 125
T + D+ L+
Sbjct 128 TTNPGDYTGLE 138
>gi|288931927|ref|YP_003435987.1| PilT protein domain protein [Ferroglobus placidus DSM 10642]
gi|288894175|gb|ADC65712.1| PilT protein domain protein [Ferroglobus placidus DSM 10642]
Length=123
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/119 (35%), Positives = 57/119 (48%), Gaps = 13/119 (10%)
Query 9 VLDTSVFIATESG--RQLDEALIPDR-VATTVVTLAELRVGVLAAATTDIRAQRLATLES 65
VLDTSV I G + L+ L D T +T E++VG A +LA L
Sbjct 3 VLDTSVIIEIARGNRKALNAVLSEDNYFYITSITWFEIKVG----------APKLAELNL 52
Query 66 VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAAL 124
V +E L D +A + A + I L + G+ V + DL+I A+ S +IT D DF L
Sbjct 53 VDSLECLSFDRKSADVAAEIYIKLKKDGKMVSLKDLFIGAICISNKEKLITMDSDFEIL 111
>gi|260893197|ref|YP_003239294.1| PilT protein domain protein [Ammonifex degensii KC4]
gi|260865338|gb|ACX52444.1| PilT protein domain protein [Ammonifex degensii KC4]
Length=129
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/122 (30%), Positives = 60/122 (50%), Gaps = 10/122 (8%)
Query 9 VLDTSVFIATESG-----RQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL 63
+LDT++ IA G R L +A ++V + L EL G + + R+
Sbjct 6 LLDTNIVIALFKGDASVRRNLAKA---EKVFIPAIVLGELYYGAYKSGQAERNLSRIE-- 60
Query 64 ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAA 123
E V ++ L + AR + ++ L GR + ND+WIAAVA + L ++T+DD F
Sbjct 61 EFVGNIAVLACNAGTAREYGVIKNQLRAKGRPIPENDIWIAAVARQQGLVLVTRDDHFGE 120
Query 124 LD 125
++
Sbjct 121 VE 122
>gi|344338644|ref|ZP_08769575.1| PilT protein domain protein [Thiocapsa marina 5811]
gi|343801226|gb|EGV19169.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=129
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (31%), Positives = 57/120 (48%), Gaps = 2/120 (1%)
Query 9 VLDTSVFIATESGRQ--LDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESV 66
++DT+++ G +D D +A +VV+L EL G A Q L
Sbjct 5 LIDTNIYSLAMRGEPDVVDRLQQLDDLAFSVVSLGELLAGFRAGHREAKNRQELGRFLDS 64
Query 67 ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDG 126
+ L D++ A +A + + L +G + ND+WIAAVA LPV T+D F A+ G
Sbjct 65 PRVRLLAADEETADFYAAIVVALKRAGTPIPTNDIWIAAVAQRHGLPVYTRDAHFQAVPG 124
>gi|239989892|ref|ZP_04710556.1| PilT domain-containing protein [Streptomyces roseosporus NRRL
11379]
gi|291446910|ref|ZP_06586300.1| PIN domain-containing protein [Streptomyces roseosporus NRRL
15998]
gi|291349857|gb|EFE76761.1| PIN domain-containing protein [Streptomyces roseosporus NRRL
15998]
Length=134
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/127 (39%), Positives = 67/127 (53%), Gaps = 7/127 (5%)
Query 8 GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL-ESV 66
GVLDT +I + L+ +P T V+LAEL+ GV A +RA R L +V
Sbjct 8 GVLDTCTYIDLD---LLEPERLPVLPVLTAVSLAELQQGVAMAKDPLVRAARTEKLGAAV 64
Query 67 ADMETLPVDDDAARMWARL--RIHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFAA 123
AD E LP D DAA + L + A R R DL IA++A+ R LP+ T++ DDF
Sbjct 65 ADFEPLPFDGDAAARYGTLVALVLAARRDPRPRRMDLMIASIASVRGLPLFTRNADDFKG 124
Query 124 LDGAASV 130
L+ +V
Sbjct 125 LESMVTV 131
>gi|220934242|ref|YP_002513141.1| PilT protein domain-containing protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995552|gb|ACL72154.1| PilT protein domain protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length=134
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/123 (34%), Positives = 66/123 (54%), Gaps = 7/123 (5%)
Query 9 VLDTSVFIATESGR-QLDEAL--IP-DRVATTVVTLAELRVGVLAAATTDIRAQRLATLE 64
+LDT++ IA G Q+ E L P + + V L EL +GV + D A RLA L
Sbjct 4 LLDTNILIAAMKGHPQVREHLEVTPLQEIVLSPVVLGELELGVAKSRYRDKNAARLAEL- 62
Query 65 SVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFAA 123
V + P+D + AR +AR+R L ++G + ND WI A A ++ L +++ + +F+
Sbjct 63 -VRGIALQPIDAEVARHYARIRAALEQAGTPIGANDYWITAQALAQELILVSDNVREFSR 121
Query 124 LDG 126
+ G
Sbjct 122 VGG 124
>gi|240171945|ref|ZP_04750604.1| PilT protein-like [Mycobacterium kansasii ATCC 12478]
Length=131
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/136 (36%), Positives = 73/136 (54%), Gaps = 17/136 (12%)
Query 7 AGVLDTSVFIATESGRQLDEALI---PDRVATTVVTLAELRVGVLAAATTDIRAQRLATL 63
+G+LDTSV I D A++ PD +A + +T+AEL G L A T A+R A L
Sbjct 3 SGLLDTSVVIDWH-----DPAIVAALPDEMAISAITVAELAAGPLLATTPIEAARRQARL 57
Query 64 ESV-ADMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQD-D 119
+ V + +E LP D A R + + + GR R R D+ IAA A + L + +++ +
Sbjct 58 QEVESRLEPLPFDGAAVRSYGLIVAAVVHEGRKPRSRFADMLIAATAHANGLDLYSRNAE 117
Query 120 DFAALDGAASVEIIRV 135
DFA L+ ++IRV
Sbjct 118 DFAGLE-----KLIRV 128
>gi|330822406|ref|YP_004362627.1| PIN domain protein [Burkholderia gladioli BSR3]
gi|327374243|gb|AEA65597.1| PIN domain protein [Burkholderia gladioli BSR3]
Length=136
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/98 (36%), Positives = 55/98 (57%), Gaps = 4/98 (4%)
Query 30 PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL 89
P+ + T+++ AELR GVL ++ + QR+ L +A + LP+ DA R + RLR L
Sbjct 31 PEHLCTSIIVAAELRFGVLKRGSSTLE-QRVEQL--LASLPVLPLQADADRCYGRLRAEL 87
Query 90 AESGRRVRINDLWIAAVA-ASRALPVITQDDDFAALDG 126
+ G+ + ND+ IAA A A A+ V +FA + G
Sbjct 88 EKQGQLIGANDMLIAAHALAVEAILVTDNTAEFARVAG 125
>gi|339323400|ref|YP_004682294.1| outer membrane protein [Cupriavidus necator N-1]
gi|338170008|gb|AEI81062.1| PilT protein domain containing protein [Cupriavidus necator N-1]
Length=133
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/101 (35%), Positives = 56/101 (56%), Gaps = 4/101 (3%)
Query 27 ALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLR 86
AL PD + T+++ AELR G A + +QR+ +++A + LP+ DA + LR
Sbjct 28 ALEPDSLCTSIIVAAELRFGA-AKKGSPALSQRVG--QALAGLGVLPLGGDADACYGELR 84
Query 87 IHLAESGRRVRINDLWIAAVAASRALPVITQD-DDFAALDG 126
L SGR + ND+ IAA A S ++T + +F+ +DG
Sbjct 85 AGLERSGRVIGANDMLIAAHALSLGAVLVTDNIGEFSRVDG 125
>gi|309790890|ref|ZP_07685433.1| PilT protein domain protein [Oscillochloris trichoides DG6]
gi|308227078|gb|EFO80763.1| PilT protein domain protein [Oscillochloris trichoides DG6]
Length=129
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (31%), Positives = 62/123 (51%), Gaps = 4/123 (3%)
Query 6 AAGVLDTSVFIATESGRQ--LDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATL 63
+ +LDTSV IA Q ++ + ++ + L EL G L + + +Q++ L
Sbjct 3 GSYLLDTSVVIAFLGNDQRIIEYFVQAKQLFLPSIVLGELYYGALRSRKPEENSQQI--L 60
Query 64 ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAA 123
E + L +DD A+ +A ++ L GR + NDLWIAA+A L + T+D F
Sbjct 61 EFGSKNVILAIDDITAQHYAIIKNQLRIKGRPIPENDLWIAAIAMQYQLVIATRDKHFHE 120
Query 124 LDG 126
++G
Sbjct 121 IEG 123
>gi|116687254|ref|YP_840500.1| PilT domain-containing protein [Burkholderia cenocepacia HI2424]
gi|116652969|gb|ABK13607.1| PilT protein domain protein [Burkholderia cenocepacia HI2424]
Length=136
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/78 (40%), Positives = 47/78 (61%), Gaps = 3/78 (3%)
Query 30 PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL 89
P++V T++V AELR GV ++ + AQR+ L +A + LP+ DA R + RLR L
Sbjct 31 PEQVCTSIVVAAELRFGVWKRGSSTL-AQRVEQL--LASLTVLPLQPDADRCYGRLRAEL 87
Query 90 AESGRRVRINDLWIAAVA 107
+ G+ + ND+ IAA A
Sbjct 88 EKQGQLIGANDMLIAAHA 105
>gi|206480017|ref|YP_002235528.1| PIN domain protein [Burkholderia cenocepacia J2315]
gi|195945173|emb|CAR57804.1| PIN domain protein [Burkholderia cenocepacia J2315]
Length=136
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/78 (40%), Positives = 47/78 (61%), Gaps = 3/78 (3%)
Query 30 PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL 89
P++V T++V AELR GV ++ + AQR+ L +A + LP+ DA R + RLR L
Sbjct 31 PEQVCTSIVVAAELRFGVWKRGSSTL-AQRVEQL--LASLTVLPLQPDADRCYGRLRAEL 87
Query 90 AESGRRVRINDLWIAAVA 107
+ G+ + ND+ IAA A
Sbjct 88 EKQGQLIGANDMLIAAHA 105
>gi|167841609|ref|ZP_02468293.1| PilT protein domain protein [Burkholderia thailandensis MSMB43]
Length=136
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/78 (39%), Positives = 47/78 (61%), Gaps = 3/78 (3%)
Query 30 PDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIHL 89
P++V T+++ AELR GV ++ + AQR+ L +A + LP+ DA R + RLR L
Sbjct 31 PEQVCTSIIVAAELRFGVWKRGSSTL-AQRVEQL--LASLTVLPLQPDADRCYGRLRAEL 87
Query 90 AESGRRVRINDLWIAAVA 107
+ G+ + ND+ IAA A
Sbjct 88 EKQGQLIGANDMLIAAHA 105
>gi|227358132|ref|ZP_03842473.1| nucleic acid-binding protein [Proteus mirabilis ATCC 29906]
gi|227161468|gb|EEI46505.1| nucleic acid-binding protein [Proteus mirabilis ATCC 29906]
Length=141
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/126 (35%), Positives = 68/126 (54%), Gaps = 13/126 (10%)
Query 9 VLDTSVFIATESGRQLDEALIP------DRVATTVVTLAELRVGVLAAATTDIRAQRLAT 62
+LDT++ I T + E L+P +++A + +TLAEL G + A+ LAT
Sbjct 5 LLDTNIVIFTIKRKP--EFLLPKFNQHAEQLAISTITLAELIFGAEKSVNP---AKNLAT 59
Query 63 LES-VADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDD-D 120
+ V+ + L DD AA + +R L + G+R+ NDL IAA A S+ L V+T + +
Sbjct 60 VNDFVSRLTVLSYDDLAAFHYGDIRATLEKQGKRIGDNDLHIAAHARSKGLIVVTNNTRE 119
Query 121 FAALDG 126
F +DG
Sbjct 120 FERVDG 125
>gi|148262123|ref|YP_001228829.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
gi|146395623|gb|ABQ24256.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=146
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/130 (28%), Positives = 62/130 (48%), Gaps = 17/130 (13%)
Query 9 VLDTSVFIATESGRQLDEALIP---------DRVATTVVTLAELRVGVLAAATTDIRAQR 59
++DT ++I E G L P + V + VT+AEL+ G A T D+R +R
Sbjct 4 LIDTCIWIDVERG-----TLAPADVAAVTGEEPVYLSPVTIAELKFGAENAKTADLRQKR 58
Query 60 LATLESVADMETLPVDDDAARMWARLRIHLAESGR--RVRINDLWIAAVAASRALPVITQ 117
LA L + L +D+ ++ + + + G+ + R+ DLW+A+ A +T
Sbjct 59 LAALTRLKRKPLLMIDETTGEIFGDIAAQIRKHGKQHQYRVQDLWLASQAVQHGFRFLTH 118
Query 118 D-DDFAALDG 126
+ DFA + G
Sbjct 119 NRKDFADIPG 128
>gi|256828120|ref|YP_003156848.1| twitching motility protein PilT [Desulfomicrobium baculatum DSM
4028]
gi|256577296|gb|ACU88432.1| PilT protein domain protein [Desulfomicrobium baculatum DSM 4028]
Length=128
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/123 (25%), Positives = 54/123 (44%), Gaps = 8/123 (6%)
Query 9 VLDTSVFIATESGRQLDEALI-----PDRVATTVVTLAELRVGVLAAATTDIRAQRLATL 63
++DT+++ G D+ LI + + + ++L EL G + + L
Sbjct 5 LIDTNIYSGALRG---DQELIRVLRGAEHIGLSAISLGELFSGFKGGNREEENKRELGIF 61
Query 64 ESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAA 123
+ PVD+ A + + L SG + ND+WIAA+A + TQD F+
Sbjct 62 LDSPRVALYPVDEYTAEHYCSILDQLRRSGTPIPTNDIWIAAIAFQHGFALFTQDRQFSK 121
Query 124 LDG 126
++G
Sbjct 122 IEG 124
>gi|304311489|ref|YP_003811087.1| Predicted nucleic acid-binding protein, contains PIN domain [gamma
proteobacterium HdN1]
gi|301797222|emb|CBL45442.1| Predicted nucleic acid-binding protein, contains PIN domain [gamma
proteobacterium HdN1]
Length=142
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/120 (39%), Positives = 62/120 (52%), Gaps = 11/120 (9%)
Query 9 VLDTSVF---IATESGRQLDEALIPDRVATTV----VTLAELRVGVLA---AATTDIRAQ 58
VLDT+V + E + + A + D+VA T+ VTLAEL G+ A ++ AQ
Sbjct 3 VLDTNVVSEAMKPEPHKAV-RAWLNDQVAETLYLSSVTLAELLFGIAALPAGKRKNMLAQ 61
Query 59 RLATLESVADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQD 118
L L + LP D DAAR +A L + SGR D +IAA+AASR V T+D
Sbjct 62 SLDGLTGLFKDRVLPFDTDAARHYAELAVIAKTSGRGFPTPDGYIAAIAASRDFIVATRD 121
>gi|262369246|ref|ZP_06062574.1| virulence associated protein VapC [Acinetobacter johnsonii SH046]
gi|262315314|gb|EEY96353.1| virulence associated protein VapC [Acinetobacter johnsonii SH046]
Length=139
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/126 (31%), Positives = 67/126 (54%), Gaps = 11/126 (8%)
Query 9 VLDTSVFIAT-----ESGRQLDEALIPDR-VATTVVTLAELRVGVLAAATTDIRAQRLAT 62
+LDT++ I E RQ E +P R + +V+TL ELR G A + + + L
Sbjct 6 LLDTNICIYIIKHQPEIVRQHFEKHLPHRNILISVITLGELRFG---AEKSQQKEKALKV 62
Query 63 LESVADM-ETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVA-ASRALPVITQDDD 120
++ + M + + +D+ A +A++R L+ G+ + NDLW+AA A A+ + V + +
Sbjct 63 IDELTSMIQVVELDEYVADHYAQIRHDLSSKGQIIGANDLWLAAHARANNWVMVTNNEKE 122
Query 121 FAALDG 126
F +DG
Sbjct 123 FLRVDG 128
Lambda K H
0.320 0.131 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129391415580
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40