BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0629c Length=575 Score E Sequences producing significant alignments: (Bits) Value gi|254230963|ref|ZP_04924290.1| exonuclease V (alpha chain) recD... 1122 0.0 gi|15607769|ref|NP_215143.1| exonuclease V alpha chain [Mycobact... 1122 0.0 gi|289744344|ref|ZP_06503722.1| exonuclease subunit V alpha recD... 1120 0.0 gi|31791811|ref|NP_854304.1| exonuclease V alpha chain [Mycobact... 1120 0.0 gi|340625646|ref|YP_004744098.1| putative exonuclease V subunit ... 1117 0.0 gi|15840030|ref|NP_335067.1| exodeoxyribonuclease V, alpha subun... 1096 0.0 gi|339293665|gb|AEJ45776.1| exonuclease V alpha subunit recD [My... 868 0.0 gi|240169398|ref|ZP_04748057.1| putative exonuclease V alpha cha... 793 0.0 gi|342858880|ref|ZP_08715534.1| exodeoxyribonuclease V, alpha su... 706 0.0 gi|126433512|ref|YP_001069203.1| DNA helicase/exodeoxyribonuclea... 705 0.0 gi|108797872|ref|YP_638069.1| DNA helicase/exodeoxyribonuclease ... 701 0.0 gi|118463540|ref|YP_883675.1| exodeoxyribonuclease V, alpha subu... 692 0.0 gi|41410189|ref|NP_963025.1| hypothetical protein MAP4091c [Myco... 691 0.0 gi|336460589|gb|EGO39482.1| exodeoxyribonuclease V, alpha subuni... 689 0.0 gi|254776977|ref|ZP_05218493.1| hypothetical protein MaviaA2_202... 688 0.0 gi|183980977|ref|YP_001849268.1| exodeoxyribonuclease V (alpha c... 668 0.0 gi|118616500|ref|YP_904832.1| exodeoxyribonuclease V (alpha chai... 667 0.0 gi|169627502|ref|YP_001701151.1| exodeoxyribonuclease V subunit ... 657 0.0 gi|118472888|ref|YP_885716.1| exodeoxyribonuclease V subunit alp... 640 0.0 gi|120402220|ref|YP_952049.1| exodeoxyribonuclease V subunit alp... 632 5e-179 gi|333989282|ref|YP_004521896.1| exodeoxyribonuclease V (subunit... 632 8e-179 gi|145225707|ref|YP_001136385.1| exodeoxyribonuclease V subunit ... 595 6e-168 gi|284031862|ref|YP_003381793.1| exodeoxyribonuclease V subunit ... 588 1e-165 gi|296165830|ref|ZP_06848325.1| exodeoxyribonuclease V alpha sub... 515 8e-144 gi|289749128|ref|ZP_06508506.1| exonuclease V alpha subunit recD... 448 2e-123 gi|229494323|ref|ZP_04388086.1| exodeoxyribonuclease V, alpha su... 437 4e-120 gi|226304348|ref|YP_002764306.1| exodeoxyribonuclease V alpha ch... 436 4e-120 gi|325673658|ref|ZP_08153349.1| exodeoxyribonuclease V alpha sub... 433 5e-119 gi|312139064|ref|YP_004006400.1| exodeoxyribonuclease v alpha su... 425 1e-116 gi|119714520|ref|YP_921485.1| DNA helicase/exodeoxyribonuclease ... 424 2e-116 gi|334336345|ref|YP_004541497.1| exodeoxyribonuclease V, alpha s... 422 9e-116 gi|336118819|ref|YP_004573591.1| exodeoxyribonuclease V subunit ... 421 1e-115 gi|111018833|ref|YP_701805.1| exodeoxyribonuclease V alpha chain... 419 7e-115 gi|226360932|ref|YP_002778710.1| exodeoxyribonuclease V alpha ch... 417 3e-114 gi|333920631|ref|YP_004494212.1| putative exodeoxyribonuclease V... 415 1e-113 gi|284044827|ref|YP_003395167.1| exodeoxyribonuclease V, subunit... 414 2e-113 gi|297626184|ref|YP_003687947.1| exodeoxyribonuclease V subunit ... 402 1e-109 gi|258654032|ref|YP_003203188.1| exodeoxyribonuclease V subunit ... 399 7e-109 gi|54024516|ref|YP_118758.1| putative RecD protein [Nocardia far... 394 3e-107 gi|336321366|ref|YP_004601334.1| exodeoxyribonuclease V subunit ... 386 6e-105 gi|152964962|ref|YP_001360746.1| exodeoxyribonuclease V subunit ... 385 1e-104 gi|296139997|ref|YP_003647240.1| exodeoxyribonuclease V subunit ... 384 3e-104 gi|326384945|ref|ZP_08206619.1| exodeoxyribonuclease V subunit a... 371 2e-100 gi|332671044|ref|YP_004454052.1| exodeoxyribonuclease V subunit ... 368 1e-99 gi|296130269|ref|YP_003637519.1| exodeoxyribonuclease V, alpha s... 356 8e-96 gi|331697796|ref|YP_004334035.1| exodeoxyribonuclease V subunit ... 352 8e-95 gi|222054487|ref|YP_002536849.1| exodeoxyribonuclease V, alpha s... 332 8e-89 gi|148262657|ref|YP_001229363.1| exodeoxyribonuclease V subunit ... 325 1e-86 gi|322417956|ref|YP_004197179.1| exodeoxyribonuclease V subunit ... 309 8e-82 gi|309812453|ref|ZP_07706208.1| exodeoxyribonuclease V, alpha su... 303 8e-80 >gi|254230963|ref|ZP_04924290.1| exonuclease V (alpha chain) recD [Mycobacterium tuberculosis C] gi|124600022|gb|EAY59032.1| exonuclease V (alpha chain) recD [Mycobacterium tuberculosis C] Length=637 Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/575 (100%), Positives = 575/575 (100%), Gaps = 0/575 (0%) Query 1 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA Sbjct 63 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 122 Query 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE Sbjct 123 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 182 Query 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV Sbjct 183 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 242 Query 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT Sbjct 243 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 302 Query 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ Sbjct 303 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 362 Query 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG Sbjct 363 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 422 Query 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL Sbjct 423 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 482 Query 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG Sbjct 483 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 542 Query 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR Sbjct 543 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 602 Query 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG Sbjct 603 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 637 >gi|15607769|ref|NP_215143.1| exonuclease V alpha chain [Mycobacterium tuberculosis H37Rv] gi|148660401|ref|YP_001281924.1| putative exonuclease V alpha chain [Mycobacterium tuberculosis H37Ra] gi|148821831|ref|YP_001286585.1| exonuclease V alpha subunit recD [Mycobacterium tuberculosis F11] 56 more sequence titles Length=575 Score = 1122 bits (2901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 574/575 (99%), Positives = 575/575 (100%), Gaps = 0/575 (0%) Query 1 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 +KLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA Sbjct 1 MKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 Query 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE Sbjct 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 Query 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV Sbjct 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 Query 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT Sbjct 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 Query 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ Sbjct 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 Query 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG Sbjct 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 Query 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL Sbjct 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 Query 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG Sbjct 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 Query 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR Sbjct 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 Query 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG Sbjct 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 >gi|289744344|ref|ZP_06503722.1| exonuclease subunit V alpha recD [Mycobacterium tuberculosis 02_1987] gi|289756710|ref|ZP_06516088.1| exonuclease subunit V alpha [Mycobacterium tuberculosis T85] gi|294996145|ref|ZP_06801836.1| exonuclease subunit V alpha recD [Mycobacterium tuberculosis 210] gi|289684872|gb|EFD52360.1| exonuclease subunit V alpha recD [Mycobacterium tuberculosis 02_1987] gi|289712274|gb|EFD76286.1| exonuclease subunit V alpha [Mycobacterium tuberculosis T85] gi|326905149|gb|EGE52082.1| exonuclease subunit V alpha recD [Mycobacterium tuberculosis W-148] gi|339297306|gb|AEJ49416.1| exonuclease V alpha subunit recD [Mycobacterium tuberculosis CCDC5180] Length=575 Score = 1120 bits (2897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/575 (99%), Positives = 575/575 (100%), Gaps = 0/575 (0%) Query 1 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 +KLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA Sbjct 1 MKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 Query 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWRE+ Sbjct 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWRED 120 Query 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV Sbjct 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 Query 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT Sbjct 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 Query 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ Sbjct 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 Query 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG Sbjct 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 Query 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL Sbjct 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 Query 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG Sbjct 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 Query 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR Sbjct 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 Query 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG Sbjct 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 >gi|31791811|ref|NP_854304.1| exonuclease V alpha chain [Mycobacterium bovis AF2122/97] gi|121636548|ref|YP_976771.1| putative exonuclease V (alpha chain) recD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989020|ref|YP_002643707.1| putative exonuclease V alpha chain [Mycobacterium bovis BCG str. Tokyo 172] gi|31617398|emb|CAD93507.1| PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE) [Mycobacterium bovis AF2122/97] gi|121492195|emb|CAL70661.1| Probable exonuclease V (alpha chain) recD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772133|dbj|BAH24939.1| putative exonuclease V alpha chain [Mycobacterium bovis BCG str. Tokyo 172] gi|341600564|emb|CCC63234.1| probable exonuclease V (alpha chain) recD [Mycobacterium bovis BCG str. Moreau RDJ] Length=575 Score = 1120 bits (2897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%) Query 1 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 +KLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA Sbjct 1 MKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 Query 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE Sbjct 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 Query 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV Sbjct 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 Query 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT Sbjct 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 Query 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ Sbjct 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 Query 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG Sbjct 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 Query 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL Sbjct 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 Query 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG Sbjct 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 Query 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAV RAKR Sbjct 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVARAKR 540 Query 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG Sbjct 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 >gi|340625646|ref|YP_004744098.1| putative exonuclease V subunit alpha [Mycobacterium canettii CIPT 140010059] gi|340003836|emb|CCC42966.1| putative exonuclease V (alpha chain) RECD (exodeoxyribonuclease V alpha chain) (exodeoxyribonuclease V polypeptide) [Mycobacterium canettii CIPT 140010059] Length=575 Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 571/575 (99%), Positives = 574/575 (99%), Gaps = 0/575 (0%) Query 1 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 + LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA Sbjct 1 MTLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 Query 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE Sbjct 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 Query 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 EQVCADLLALLTSRRPAGVPDL+RLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV Sbjct 121 EQVCADLLALLTSRRPAGVPDLQRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 Query 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT Sbjct 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 Query 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ Sbjct 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 Query 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG Sbjct 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 Query 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHR+GPTGVL Sbjct 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHREGPTGVL 420 Query 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG Sbjct 421 HWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISG 480 Query 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR Sbjct 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 Query 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG Sbjct 541 KVRVVGSEASVRAAIARRAVRASGLRMRLQSTGCG 575 >gi|15840030|ref|NP_335067.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium tuberculosis CDC1551] gi|13880175|gb|AAK44881.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium tuberculosis CDC1551] Length=561 Score = 1096 bits (2834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/561 (100%), Positives = 561/561 (100%), Gaps = 0/561 (0%) Query 15 MVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVA 74 MVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVA Sbjct 1 MVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVA 60 Query 75 GHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSR 134 GHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSR Sbjct 61 GHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSR 120 Query 135 RPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELA 194 RPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELA Sbjct 121 RPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELA 180 Query 195 GEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPGARFR 254 GEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPGARFR Sbjct 181 GEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPGARFR 240 Query 255 QDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLV 314 QDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLV Sbjct 241 QDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLV 300 Query 315 DGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAP 374 DGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAP Sbjct 301 DGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAP 360 Query 375 RLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEET 434 RLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEET Sbjct 361 RLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEET 420 Query 435 GQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGD 494 GQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGD Sbjct 421 GQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGD 480 Query 495 VETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAA 554 VETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAA Sbjct 481 VETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAA 540 Query 555 IARRAVRASGLRMRLQSTGCG 575 IARRAVRASGLRMRLQSTGCG Sbjct 541 IARRAVRASGLRMRLQSTGCG 561 >gi|339293665|gb|AEJ45776.1| exonuclease V alpha subunit recD [Mycobacterium tuberculosis CCDC5079] Length=485 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/447 (99%), Positives = 447/447 (100%), Gaps = 0/447 (0%) Query 1 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 +KLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA Sbjct 1 MKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 Query 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWRE+ Sbjct 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWRED 120 Query 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV Sbjct 121 EQVCADLLALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTV 180 Query 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT Sbjct 181 ARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT 240 Query 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ Sbjct 241 LHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQ 300 Query 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG Sbjct 301 LASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 Query 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL Sbjct 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 Query 421 HWNRRVQAWLAEETGQPPWTPWYAGRP 447 HWNRRVQAWLAEETGQPPWTPWYAGRP Sbjct 421 HWNRRVQAWLAEETGQPPWTPWYAGRP 447 >gi|240169398|ref|ZP_04748057.1| putative exonuclease V alpha chain [Mycobacterium kansasii ATCC 12478] Length=575 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/576 (79%), Positives = 495/576 (86%), Gaps = 9/576 (1%) Query 1 VKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRA 60 + L DV+ AV A+G++R+FN+AGVLD++DVHVAQRLCAL E+D+RVALA A+AVRALR Sbjct 1 MSLVDVETAVTAAGLLRSFNEAGVLDLADVHVAQRLCALGRETDDRVALAAALAVRALRG 60 Query 61 GSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREE 120 GSVCVD+ +IA A D LPWPD WL AVRAS LLADPPVLHLYDDRLLYLDRY REE Sbjct 61 GSVCVDMSTIAEAA--DGLPWPDAEQWLTAVRASTLLADPPVLHLYDDRLLYLDRYRREE 118 Query 121 EQVCADLLALLTSRRPAG----VPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGK 176 +QVC DL+A+L R P+G VP RLFP GF+EQR AAEIA+SQGVTVLTGGPGTGK Sbjct 119 QQVCDDLVAMLVPR-PSGPTAEVPAFERLFPPGFEEQRGAAEIAVSQGVTVLTGGPGTGK 177 Query 177 TTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDL 236 TTTVARLLA +AEQAELAG RPRIALAAPTGKAAARLAEAVR E+ +LDA DR RLG L Sbjct 178 TTTVARLLAALAEQAELAGRSRPRIALAAPTGKAAARLAEAVRHEVTRLDAADRMRLGHL 237 Query 237 HAVTLHRLLGAKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLIL 294 AVTLHRLLG++P +RFR DR NRLPH+VIVVDETSMVSLTLMARL EAVRPGARLIL Sbjct 238 QAVTLHRLLGSRPDTSSRFRHDRGNRLPHDVIVVDETSMVSLTLMARLLEAVRPGARLIL 297 Query 295 VGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVL 354 VGDADQLASVEAGAVLADLVDG + RDD VA LRTSHRFGK IGTLA+AIR GD D VL Sbjct 298 VGDADQLASVEAGAVLADLVDGLAARDDVRVAALRTSHRFGKSIGTLADAIRGGDADRVL 357 Query 355 GLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRD 414 LLRSG+E IEF+DDEDP RLRAVLVPHALRLREAALLGA D AL TLDEHR+LCAHR Sbjct 358 ALLRSGDEHIEFIDDEDPTQRLRAVLVPHALRLREAALLGAVDAALGTLDEHRMLCAHRR 417 Query 415 GPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGL 474 GP GV HWNR+V+AWL EETGQPPW WYAGRPLLVTANDYGLRVYNGDTGV + GP GL Sbjct 418 GPFGVGHWNRQVEAWLGEETGQPPWLQWYAGRPLLVTANDYGLRVYNGDTGVAMVGPDGL 477 Query 475 RAVISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTA 534 RAV++GA+GPL ATGRL DVETMHAMTIHKSQGSQ D VTVL+P++DSRLLTREL YTA Sbjct 478 RAVLAGAAGPLAFATGRLSDVETMHAMTIHKSQGSQADVVTVLLPEQDSRLLTRELFYTA 537 Query 535 VTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 VTRAK KVRVVGSEASVRAA+ RRAVRASGLRMRLQ Sbjct 538 VTRAKAKVRVVGSEASVRAAVERRAVRASGLRMRLQ 573 >gi|342858880|ref|ZP_08715534.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium colombiense CECT 3035] gi|342133121|gb|EGT86324.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium colombiense CECT 3035] Length=571 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/565 (73%), Positives = 448/565 (80%), Gaps = 4/565 (0%) Query 12 ASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSI- 70 A+G++R F AGV + +DVHVAQRL +L GE+DERVALAVA+ VRALR GSVCVDL S+ Sbjct 8 ATGLLRTFTDAGVFEPADVHVAQRLTSLTGETDERVALAVALVVRALRGGSVCVDLRSVP 67 Query 71 ARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLAL 130 A+V D LPWP DW+AA RAS LL PPVL L D LLY DRYW EEEQVCADLLAL Sbjct 68 AQVGADDYLPWPGADDWMAAARASALLQTPPVLRLLGD-LLYFDRYWIEEEQVCADLLAL 126 Query 131 LTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQ 190 + RLF G++EQR AAE+A++Q +TVLTGGPGTGKTTTVARLLAL+ EQ Sbjct 127 SVAPETVESSSYERLFGPGYEEQRAAAEVAVAQALTVLTGGPGTGKTTTVARLLALLVEQ 186 Query 191 AELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP- 249 AE AG PRPRIALAAPTGKAAARLAEAV +L A DRARL L TLHRLLG +P Sbjct 187 AERAGRPRPRIALAAPTGKAAARLAEAVAAGSEELTAVDRARLTGLSGTTLHRLLGPRPD 246 Query 250 -GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGA 308 RF+ +R NRLPH+VIVVDETSMVSLT+MARL EAVRP RLILVGD DQLASVEAGA Sbjct 247 TSVRFKHNRGNRLPHDVIVVDETSMVSLTMMARLVEAVRPDTRLILVGDPDQLASVEAGA 306 Query 309 VLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVD 368 VLADLVDG + RDD VA LRT HRFG IG LAEAIR GDGD V+ LL +G E IE+VD Sbjct 307 VLADLVDGLAARDDVRVAALRTPHRFGTSIGALAEAIRVGDGDRVVQLLVAGGEHIEWVD 366 Query 369 DEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQA 428 E PA RLR VLV HALRLR AALLGA D ALATLDEHRLLCAHR+GP G HWN VQ Sbjct 367 AERPAERLREVLVTHALRLRSAALLGAVDEALATLDEHRLLCAHREGPYGANHWNTLVQK 426 Query 429 WLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVA 488 W+ E TGQP W+ WYAGRPLLVTANDYGLR+YNGDTGV +AG GLRAV++ ASGPLD A Sbjct 427 WIGEATGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVVAAASGPLDFA 486 Query 489 TGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSE 548 T RLG+VETMHAMTIHKSQGSQ DEVTVL+P EDSRLLTREL YTAVTRAK KVRVVG E Sbjct 487 TSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKTKVRVVGPE 546 Query 549 ASVRAAIARRAVRASGLRMRLQSTG 573 ASVRAAI RRAVRA+GLR RL+S G Sbjct 547 ASVRAAIERRAVRATGLRQRLRSFG 571 >gi|126433512|ref|YP_001069203.1| DNA helicase/exodeoxyribonuclease V subunit alpha [Mycobacterium sp. JLS] gi|126233312|gb|ABN96712.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Mycobacterium sp. JLS] Length=580 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/571 (70%), Positives = 444/571 (78%), Gaps = 6/571 (1%) Query 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 A+ +G +RAF A V + +DVHVA+RL +A E DE VALAVA AVRALR GSVCVDL Sbjct 5 ALAVTGSLRAFTDAEVFEPADVHVARRLTVMAKEPDESVALAVAFAVRALRNGSVCVDLR 64 Query 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDR---LLYLDRYWREEEQVCA 125 ++A G DLPWPDP WL AVRASPL PPVL LY LLYLDRYWREE+QVC Sbjct 65 AVADQVGLPDLPWPDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCD 124 Query 126 DLLALLTSRRPAGVPDLRRLFPTG-FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLL 184 D+LALL S P VP L RLFPT F EQR AAEIALSQ +TVLTGGPGTGKTTTVARLL Sbjct 125 DVLALLESSPPGAVPGLDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVARLL 184 Query 185 ALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRL 244 AL+AEQA L P RIALAAPTGKAAARL EAV ++A LDA DR RL +L A TLHRL Sbjct 185 ALLAEQASLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLHRL 244 Query 245 LGAK--PGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLA 302 L + +RFR R+NRLPH+VIVVDETSMVSLTLMARL EAVRP +RL+LVGDADQLA Sbjct 245 LQRRRDNASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQLA 304 Query 303 SVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEE 362 SVEAGAVLADLVDG RDD +A+L TSHRFG IG LA+AIR G+ D V+GLLR G Sbjct 305 SVEAGAVLADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDGGP 364 Query 363 RIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHW 422 IE+ D ++PA RLR VLVPHALRLREAA+LG ALATLDEHRLLCAHR GP GV HW Sbjct 365 DIEWFDTDNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVRHW 424 Query 423 NRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGAS 482 NR+V+ WL + TG+P W+ WYAGRPLLVTANDYGLR+YNGDTGV + GL AV+ + Sbjct 425 NRQVERWLTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRGDGLAAVVGSGA 484 Query 483 GPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKV 542 GP++ +T RL DVET+HAMTIHKSQGSQ EVTVL+P E+SRLLTREL YTAVTRAK KV Sbjct 485 GPVEFSTSRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFYTAVTRAKAKV 544 Query 543 RVVGSEASVRAAIARRAVRASGLRMRLQSTG 573 RVVGSEA+VRAAI RR VRASGL RL +G Sbjct 545 RVVGSEAAVRAAIERRVVRASGLAQRLGGSG 575 >gi|108797872|ref|YP_638069.1| DNA helicase/exodeoxyribonuclease V subunit alpha [Mycobacterium sp. MCS] gi|119866966|ref|YP_936918.1| DNA helicase/exodeoxyribonuclease V subunit alpha [Mycobacterium sp. KMS] gi|108768291|gb|ABG07013.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Mycobacterium sp. MCS] gi|119693055|gb|ABL90128.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Mycobacterium sp. KMS] Length=580 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/571 (70%), Positives = 444/571 (78%), Gaps = 6/571 (1%) Query 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 A+ +G++RAF A V + +DVHVA+RL +A E DE VALAVA AVRALR GSVCVDL Sbjct 5 ALAVTGLLRAFTDAEVFEPADVHVARRLTDMAKEPDESVALAVAFAVRALRNGSVCVDLR 64 Query 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDR---LLYLDRYWREEEQVCA 125 ++A G DLPW DP WL AVRASPL PPVL LY LLYLDRYWREE+QVC Sbjct 65 AVADQVGLPDLPWRDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCD 124 Query 126 DLLALLTSRRPAGVPDLRRLFPTG-FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLL 184 D+LALL S P VP L RLFPT F EQR AAEIALSQ +TVLTGGPGTGKTTTVARLL Sbjct 125 DVLALLESSPPGAVPGLDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVARLL 184 Query 185 ALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRL 244 AL+AEQA L P RIALAAPTGKAAARL EAV ++A LDA DR RL +L A TLHRL Sbjct 185 ALLAEQASLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLHRL 244 Query 245 LGAK--PGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLA 302 L + +RFR R+NRLPH+VIVVDETSMVSLTLMARL EAVRP +RL+LVGDADQLA Sbjct 245 LQRRRDNASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQLA 304 Query 303 SVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEE 362 SVEAGAVLADLVDG RDD +A+L TSHRFG IG LA+AIR G+ D V+GLLR G Sbjct 305 SVEAGAVLADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDGGP 364 Query 363 RIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHW 422 IE+ D ++PA RLR VLVPHALRLREAA+LG ALATLDEHRLLCAHR GP GV HW Sbjct 365 DIEWFDTDNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVRHW 424 Query 423 NRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGAS 482 NR+V+ WL + TG+P W+ WYAGRPLLVTANDYGLR+YNGDTGV + GL AV+ + Sbjct 425 NRQVERWLTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRGDGLTAVVGSGA 484 Query 483 GPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKV 542 GP++ +T RL DVET+HAMTIHKSQGSQ EVTVL+P E+SRLLTREL YTAVTRAK KV Sbjct 485 GPVEFSTSRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFYTAVTRAKAKV 544 Query 543 RVVGSEASVRAAIARRAVRASGLRMRLQSTG 573 RVVGSEA+VRAAI RR VRASGL RL +G Sbjct 545 RVVGSEAAVRAAIERRVVRASGLAQRLGGSG 575 >gi|118463540|ref|YP_883675.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium avium 104] gi|118164827|gb|ABK65724.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium avium 104] Length=570 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/563 (72%), Positives = 444/563 (79%), Gaps = 3/563 (0%) Query 13 SGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIAR 72 +G +R F AG+ + +D+HVAQRL AL GESD+RVALAVA+ VRALR GSVCVDL ++ Sbjct 9 AGPLRPFADAGIFEAADIHVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPA 68 Query 73 VAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLT 132 G DLPWP DWLAAVRASPLL PPVL + D LLY DRYW EEEQVC DLLAL Sbjct 69 QVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGD-LLYFDRYWLEEEQVCTDLLALSA 127 Query 133 SRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAE 192 RLFP G++EQR AA IA+SQ +TVLTGGPGTGKTTTVARLLAL+ EQAE Sbjct 128 PAGDVESSCYERLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVARLLALLVEQAE 187 Query 193 LAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--G 250 AGEPRPRIALAAPTGKAAARLAEAV E+ LD DRARL L TLHRLLG +P Sbjct 188 RAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRPDTS 247 Query 251 ARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVL 310 RF+ +R NRLPH++IVVDETSMVSLT+MARLAEAVRP RLILVGD DQLASVEAGAVL Sbjct 248 VRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGAVL 307 Query 311 ADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDE 370 ADLVDG + R VA L T HRFG IG LA AIRAGD D V+ LL +G E IE+VD E Sbjct 308 ADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVVELLAAGGEHIEWVDSE 367 Query 371 DPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWL 430 PA RLR VLV HALRLR AALLGA+ ALATLDEHRLLCAHRDGP G + WN V W+ Sbjct 368 RPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVHNWI 427 Query 431 AEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATG 490 AEETGQP W+ WYAGRPLLVTANDYGLR+YNGDTGV +AG GLRAVI+GA+GPLD AT Sbjct 428 AEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIAGAAGPLDFATS 487 Query 491 RLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEAS 550 RLG+VETMHAMTIHKSQGSQ DEVTVL+P EDSRLLTREL YTAVTRAK +VRVVG EAS Sbjct 488 RLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGPEAS 547 Query 551 VRAAIARRAVRASGLRMRLQSTG 573 VRAAI RRA+RA+GLR RL+ G Sbjct 548 VRAAIERRAIRATGLRQRLRVVG 570 >gi|41410189|ref|NP_963025.1| hypothetical protein MAP4091c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399023|gb|AAS06641.1| RecD [Mycobacterium avium subsp. paratuberculosis K-10] Length=574 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/566 (72%), Positives = 448/566 (80%), Gaps = 9/566 (1%) Query 13 SGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIAR 72 +G +R F AG+ + +DV VAQRL AL GESD+RVALAVA+ VRALR GSVCVDL ++ Sbjct 13 AGPLRPFADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPA 72 Query 73 VAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLT 132 G DLPWP DWLAAVRASPLL PPVL + D LLY DRYW EEEQVC DLLAL Sbjct 73 QVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGD-LLYFDRYWLEEEQVCTDLLALSA 131 Query 133 SRRPAGVPD---LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAE 189 PAG + RLFP G++EQR AA IA+SQ +TVLTGGPGTGKTTTVARLLAL+ E Sbjct 132 ---PAGDVESSCYERLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVARLLALLVE 188 Query 190 QAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP 249 QAE AGEPRPRIALAAPTGKAAARLAEAV E+ LD DRARL L TLHRLLG +P Sbjct 189 QAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRP 248 Query 250 --GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAG 307 RF+ +R NRLPH++IVVDETSMVSLT+MARLAEAVRP RLILVGD DQLASVEAG Sbjct 249 DTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAG 308 Query 308 AVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFV 367 AVLADLVDG + R VA L T HRFG IG LA AIRAGD D VL LL +G E IE+V Sbjct 309 AVLADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAAGGEHIEWV 368 Query 368 DDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQ 427 D E PA RLR VLV HALRLR AALLGA+ ALATLDEHRLLCAHRDGP G + WN V Sbjct 369 DSERPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVH 428 Query 428 AWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDV 487 W+AEETGQP W+ WYAGRPLLVTANDYGLR+YNGDTGV +AG GLRAVI+GA+GPLD Sbjct 429 NWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIAGAAGPLDF 488 Query 488 ATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGS 547 AT RLG+VETMHAMTIHKSQGSQ DEVTVL+P EDSRLLTREL YTAVTRAK +VRVVG Sbjct 489 ATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGP 548 Query 548 EASVRAAIARRAVRASGLRMRLQSTG 573 EASVRAAI RRA+RA+GLR RL++ G Sbjct 549 EASVRAAIERRAIRATGLRQRLRAVG 574 >gi|336460589|gb|EGO39482.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=574 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/566 (72%), Positives = 448/566 (80%), Gaps = 9/566 (1%) Query 13 SGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIAR 72 +G +R F AG+ + +D+ VAQRL AL GESD+RVALAVA+ VRALR GSVCVDL ++ Sbjct 13 AGPLRPFADAGIFEAADIRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPA 72 Query 73 VAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLT 132 G DLPWP DWLAAVRASPLL PPVL + D LLY DRYW EEEQVC DLLAL Sbjct 73 QVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGD-LLYFDRYWLEEEQVCTDLLALSA 131 Query 133 SRRPAGVPD---LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAE 189 PAG + RLFP G++EQR AA IA+SQ +T+LTGGPGTGKTTTVARLLAL+ E Sbjct 132 ---PAGDVESSCYERLFPPGYEEQRAAARIAVSQALTMLTGGPGTGKTTTVARLLALLVE 188 Query 190 QAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP 249 QAE AGEPRPRIALAAPTGKAAARLAEAV E+ LD DRARL L TLHRLLG +P Sbjct 189 QAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRP 248 Query 250 --GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAG 307 RF+ +R NRLPH++IVVDETSMVSLT+MARLAEAVRP RLILVGD DQLASVEAG Sbjct 249 DTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAG 308 Query 308 AVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFV 367 AVLADLVDG + R VA L T HRFG IG LA AIRAGD D VL LL +G E IE+V Sbjct 309 AVLADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAAGGEHIEWV 368 Query 368 DDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQ 427 D E PA RLR VLV HALRLR AALLGA+ ALATLDEHRLLCAHRDGP G + WN V Sbjct 369 DSERPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVH 428 Query 428 AWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDV 487 W+AEETGQP W+ WYAGRPLLVTANDYGLR+YNGDTGV +AG GLRAVI+GA+GPLD Sbjct 429 NWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIAGAAGPLDF 488 Query 488 ATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGS 547 AT RLG+VETMHAMTIHKSQGSQ DEVTVL+P EDSRLLTREL YTAVTRAK +VRVVG Sbjct 489 ATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSRVRVVGP 548 Query 548 EASVRAAIARRAVRASGLRMRLQSTG 573 EASVRAAI RRA+RA+GLR RL++ G Sbjct 549 EASVRAAIERRAIRATGLRQRLRAVG 574 >gi|254776977|ref|ZP_05218493.1| hypothetical protein MaviaA2_20231 [Mycobacterium avium subsp. avium ATCC 25291] Length=574 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/566 (72%), Positives = 446/566 (79%), Gaps = 9/566 (1%) Query 13 SGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIAR 72 +G +R F AG+ + +D+ VAQRL AL GESD+RVALAVA+ VRALR GSVCVDL ++ Sbjct 13 AGPLRPFADAGIFEAADIRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPA 72 Query 73 VAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLT 132 G DLPWP DWLAAVRASPLL PPVL + D LLY DRYW EEEQVC DLLAL Sbjct 73 QVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGD-LLYFDRYWLEEEQVCTDLLALSA 131 Query 133 SRRPAGVPD---LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAE 189 PAG + RLFP G++EQR AA IA+SQ +TVLTGGPG GKTTTVARLLAL E Sbjct 132 ---PAGDVESSCYERLFPPGYEEQRAAARIAVSQALTVLTGGPGXGKTTTVARLLALXVE 188 Query 190 QAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP 249 QAE AGEPRPRIALAAPTGKAAARLAEAV E+ LD DRARL L TLHRLLG +P Sbjct 189 QAERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRP 248 Query 250 --GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAG 307 RF+ +R NRLPH++IVVDETSMVSLT+MARLAEAVRP RLILVGD DQLASVEAG Sbjct 249 DTSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAG 308 Query 308 AVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFV 367 AVLADLVDG + R VA L T HRFG IG LA AIRAGD D V+ LL +G E IE+V Sbjct 309 AVLADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVVELLAAGGEHIEWV 368 Query 368 DDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQ 427 D E PA RLR VLV HALRLR AALLGA+ ALATLDEHRLLCAHRDGP G + WN V Sbjct 369 DSERPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVH 428 Query 428 AWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDV 487 W+AEETGQP W+ WYAGRPLLVTANDYGLR+YNGDTGV +AG GLRAVI+GA+GPLD Sbjct 429 NWIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTVAGADGLRAVIAGAAGPLDF 488 Query 488 ATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGS 547 AT RLG+VETMHAMTIHKSQGSQ DEVTVL+P EDSRLLTREL YTAVTRAK +VRVVG Sbjct 489 ATSRLGEVETMHAMTIHKSQGSQADEVTVLIPAEDSRLLTRELFYTAVTRAKSRVRVVGP 548 Query 548 EASVRAAIARRAVRASGLRMRLQSTG 573 EASVRAAI RRA+RA+GLR RL++ G Sbjct 549 EASVRAAIERRAIRATGLRQRLRAVG 574 >gi|183980977|ref|YP_001849268.1| exodeoxyribonuclease V (alpha chain), RecD [Mycobacterium marinum M] gi|183174303|gb|ACC39413.1| exodeoxyribonuclease V (alpha chain), RecD [Mycobacterium marinum M] Length=587 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/573 (68%), Positives = 446/573 (78%), Gaps = 11/573 (1%) Query 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 Query 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV D+L Sbjct 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVADDIL 133 Query 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 ALL +R A P ++ RLFP G++EQR AA+IAL+QG+TVLTGGPGTGKTTTVARLLAL Sbjct 134 ALLAARASASGPAIEVNRLFPPGYEEQRAAAKIALAQGLTVLTGGPGTGKTTTVARLLAL 193 Query 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 AEQA+LAG+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct 194 FAEQAQLAGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 Query 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 Query 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 Query 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 E+++ DP P+LR VL+PHAL LR A LG + ALATLDE RLLCAHR GP G+ HWN Sbjct 374 EWINAADPTPQLRNVLLPHALELRRAGALGDTAAALATLDEQRLLCAHRRGPYGIAHWNH 433 Query 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 Query 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAVTR Sbjct 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 Query 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 A RKVR+VG E VRAAIARRA+RA+GLR RLQ Sbjct 554 AARKVRIVGPECDVRAAIARRAIRATGLRSRLQ 586 >gi|118616500|ref|YP_904832.1| exodeoxyribonuclease V (alpha chain), RecD [Mycobacterium ulcerans Agy99] gi|118568610|gb|ABL03361.1| exodeoxyribonuclease V (alpha chain), RecD [Mycobacterium ulcerans Agy99] Length=587 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/573 (68%), Positives = 445/573 (78%), Gaps = 11/573 (1%) Query 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 A ASG +R FN+A V+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct 14 AASASGPLRTFNEARVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 Query 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV D+L Sbjct 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVADDIL 133 Query 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 ALL +R A P ++ RLFP G++EQR AA+IAL+QG+TVLTGGPGTGKTTTVARLLAL Sbjct 134 ALLAARASASGPAIEVNRLFPPGYEEQRAAAKIALAQGLTVLTGGPGTGKTTTVARLLAL 193 Query 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 AEQA+LAG+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct 194 FAEQAQLAGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 Query 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 Query 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 Query 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 E+++ DP P+LR VL+PHAL LR A LG + ALATLDE RLLCAHR GP G+ HWN Sbjct 374 EWINAADPTPQLRNVLLPHALELRRAGALGDTAAALATLDEQRLLCAHRRGPYGIAHWNH 433 Query 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR V Sbjct 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVV 493 Query 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAVTR Sbjct 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 Query 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 A RKVR+VG E VRAAIARRA+RA+GLR RLQ Sbjct 554 AARKVRIVGPECDVRAAIARRAIRATGLRSRLQ 586 >gi|169627502|ref|YP_001701151.1| exodeoxyribonuclease V subunit alpha [Mycobacterium abscessus ATCC 19977] gi|169239469|emb|CAM60497.1| Exodeoxyribonuclease V, alpha subunit (RecD) [Mycobacterium abscessus] Length=552 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/562 (68%), Positives = 438/562 (78%), Gaps = 16/562 (2%) Query 14 GMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARV 73 +V AF + +L+ +DVHVAQRL ALA E+DE V LA+A+AVRALR GSVCVDL ++A Sbjct 2 SLVEAFGE--ILEPADVHVAQRLTALASETDESVELAIALAVRALRGGSVCVDLRAVAAQ 59 Query 74 AGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTS 133 LPWP DWLAAVRASPL +PPVL L+ D LLYLDRYWREE+QVC D+ AL+ + Sbjct 60 VDMPSLPWPAADDWLAAVRASPLAGEPPVLRLFGD-LLYLDRYWREEQQVCTDVQALMAA 118 Query 134 RRP-AGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAE 192 +P VP RLFP GF+EQR AA+IALSQG+TVLTGGPGTGKTTTVARLLAL+A+QA Sbjct 119 AQPRTEVPTYERLFPQGFEEQRAAADIALSQGLTVLTGGPGTGKTTTVARLLALLADQAS 178 Query 193 LAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--G 250 A RIALAAPTGKAAARL EAV+ E+ +LDA DR+RL L A TLHRLLG++P Sbjct 179 SASAAPLRIALAAPTGKAAARLQEAVQLEVNQLDAVDRSRLAGLQATTLHRLLGSRPDTS 238 Query 251 ARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVL 310 +RF+ DR NRLPH+VIVVDETSMVSLT+MARL EAVRP ARL+LVGD DQLASVEAGAVL Sbjct 239 SRFKHDRGNRLPHDVIVVDETSMVSLTMMARLLEAVRPQARLLLVGDPDQLASVEAGAVL 298 Query 311 ADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDE 370 ADLV+G + VA LRTSHRFG IG LA A+R GD D L +L SG+ +E+ D Sbjct 299 ADLVEGL---ESERVAALRTSHRFGAAIGALAAAVRDGDADRALEVLASGDPHVEWSTDS 355 Query 371 DPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWL 430 + LR VLVP AL LR A+L G + ALA LDEHR+LCAHR GP GV HWNR+V+ W+ Sbjct 356 EG---LRDVLVPQALALRAASLSGDATAALAVLDEHRMLCAHRHGPFGVTHWNRQVERWI 412 Query 431 AEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATG 490 EETG+P W PWYAGRP+LVTANDYGLR+YNGDTGV +AGP GLRAVI AS AT Sbjct 413 TEETGEPHWAPWYAGRPILVTANDYGLRLYNGDTGVTVAGPDGLRAVIGAAS----FATS 468 Query 491 RLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEAS 550 RL +VETMHAMTIHKSQGSQ +EVTVL+P EDSRLLTREL YTAVTRAK++VRVVGSEA Sbjct 469 RLVEVETMHAMTIHKSQGSQANEVTVLLPSEDSRLLTRELFYTAVTRAKQRVRVVGSEAE 528 Query 551 VRAAIARRAVRASGLRMRLQST 572 VRAAI R+AVRASGL RL+ + Sbjct 529 VRAAIQRQAVRASGLGRRLRHS 550 >gi|118472888|ref|YP_885716.1| exodeoxyribonuclease V subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|5678923|gb|AAD46809.1|AF157643_3 RecD [Mycobacterium smegmatis] gi|118174175|gb|ABK75071.1| exodeoxyribonuclease V, alpha subunit [Mycobacterium smegmatis str. MC2 155] Length=554 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/562 (70%), Positives = 446/562 (80%), Gaps = 12/562 (2%) Query 15 MVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVA 74 ++ AF A +L+ +DVHVAQRL LA E D V LAVA+AVRALR GSVCVDL S+A Sbjct 3 LLEAF--AEILEPADVHVAQRLTVLADEPDASVELAVALAVRALRGGSVCVDLRSVAGQV 60 Query 75 GHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSR 134 DLPWPDP WLAA+ ASPLL PPVL L+ D LLYLDRYW EE+QVC D+LAL+++R Sbjct 61 ELPDLPWPDPDAWLAALAASPLLGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSAR 119 Query 135 RPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELA 194 VPD+ RLF GF+EQR AA++ALSQG+TVLTGGPGTGKTTTVARLLAL+AEQA LA Sbjct 120 PGGAVPDVSRLFGAGFEEQRAAAKVALSQGLTVLTGGPGTGKTTTVARLLALLAEQAALA 179 Query 195 GEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GAR 252 G+P PRIALAAPTGKAAARL EAV+ E+ +LD +R RL LHA TLHRLLG +P +R Sbjct 180 GKPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSR 239 Query 253 FRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLAD 312 FR R NRLPH+VIVVDETSMVSLT+MARL EAVRP RL+LVGD DQLASVEAGAVLAD Sbjct 240 FRHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLAD 299 Query 313 LVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDP 372 LV+G R VA+L+TSHRFG+ IG LA AIR GD DA L +L +G E IE+V EDP Sbjct 300 LVEGLGSRG---VAELKTSHRFGESIGALASAIRTGDADAALAVLAAGGEHIEWV-HEDP 355 Query 373 APRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAE 432 +LR V+VPHA+RLR+AA+LG ALATLDEHRLLCAHR GP GV HWNR+VQ WL E Sbjct 356 VEQLREVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGE 415 Query 433 ETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRL 492 ETG+P W WY GRP+LVTANDYGL++YNGDTGVV+A P G+RAVI A ATGRL Sbjct 416 ETGEPLWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAG---TFATGRL 472 Query 493 GDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVR 552 DVETMHAMTIHKSQGSQ DEVTVL+P EDSRLLTREL YTAVTRAK +VRVVG+EA VR Sbjct 473 TDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYTAVTRAKTRVRVVGAEAEVR 532 Query 553 AAIARRAVRASGLRMRLQSTGC 574 AAI R+AVRA+GLR RL+ G Sbjct 533 AAIERQAVRATGLRKRLRPAGV 554 >gi|120402220|ref|YP_952049.1| exodeoxyribonuclease V subunit alpha [Mycobacterium vanbaalenii PYR-1] gi|119955038|gb|ABM12043.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Mycobacterium vanbaalenii PYR-1] Length=551 Score = 632 bits (1630), Expect = 5e-179, Method: Compositional matrix adjust. Identities = 371/558 (67%), Positives = 432/558 (78%), Gaps = 13/558 (2%) Query 16 VRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAG 75 V AF++ + + +D+HVAQRL L E D+ VALAVA+AVRALR GSVCVDL +IA G Sbjct 3 VEAFSE--LFEPADLHVAQRLTTLGKEGDDSVALAVALAVRALRGGSVCVDLRAIATQVG 60 Query 76 HDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRR 135 +LPWP+P WLAAV ASPL AD VL ++ D LLYLDRYWREE+QVC D+LALL S Sbjct 61 MPELPWPEPDRWLAAVGASPL-ADERVLRMHGD-LLYLDRYWREEQQVCDDVLALLASPL 118 Query 136 PAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAG 195 PA P + RLFP G++EQR AA++AL Q +TVLTGGPGTGKTTTVARLLA +AEQAE AG Sbjct 119 PATAPSIERLFPAGWEEQREAAKVALRQSLTVLTGGPGTGKTTTVARLLASIAEQAESAG 178 Query 196 EPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARF 253 PR+ALAAPTGKAAARL +AV E+ KL A D+ RL L A TLHRLLG++P +RF Sbjct 179 GAPPRMALAAPTGKAAARLQDAVHAEVGKLPAVDQGRLAGLRATTLHRLLGSRPDTSSRF 238 Query 254 RQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADL 313 R R NRLPH+VIVVDETSMVSLT+MARL EAVRP RL+ VGD DQLASV+AGAVLADL Sbjct 239 RHHRDNRLPHDVIVVDETSMVSLTMMARLLEAVRPDTRLLFVGDPDQLASVDAGAVLADL 298 Query 314 VDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPA 373 V+G DA V +L+T HRFG+ IG+LAEAIRAGD D + LLR+G + + ++D +DP+ Sbjct 299 VEGLG---DAGVVELKTPHRFGETIGSLAEAIRAGDADTAVQLLRAGGDAVAWLDTDDPS 355 Query 374 PRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEE 433 LRA LV A LR AALLG + AL LD HRLLCAHR GP GV HWNR+V+ WLA++ Sbjct 356 DALRATLVARADELRRAALLGDARAALGVLDGHRLLCAHRRGPFGVTHWNRQVERWLADK 415 Query 434 TGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLG 493 TGQP W+ WY GRPLLVTANDYGL VYNGDTGVV+A P GLRA + G L A GRLG Sbjct 416 TGQPMWSQWYPGRPLLVTANDYGLGVYNGDTGVVVAAPDGLRAHV----GSLQFAPGRLG 471 Query 494 DVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRA 553 +VETM AMTIHKSQGSQ DEVTVL+P +DSRLLTREL YTAVTRAK+ VRVVG+EASVR Sbjct 472 EVETMFAMTIHKSQGSQADEVTVLLPPQDSRLLTRELFYTAVTRAKKHVRVVGTEASVRT 531 Query 554 AIARRAVRASGLRMRLQS 571 AI RRA RASGL RL++ Sbjct 532 AIGRRATRASGLAQRLRT 549 >gi|333989282|ref|YP_004521896.1| exodeoxyribonuclease V (subunit alpha) RecD [Mycobacterium sp. JDM601] gi|333485250|gb|AEF34642.1| exodeoxyribonuclease V (alpha chain) RecD [Mycobacterium sp. JDM601] Length=584 Score = 632 bits (1629), Expect = 8e-179, Method: Compositional matrix adjust. Identities = 385/568 (68%), Positives = 447/568 (79%), Gaps = 10/568 (1%) Query 12 ASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIA 71 A+G++R FN+AGVL+ +DVH AQRLCAL ESDE VALAVA+AVRALR GSVCV+L ++A Sbjct 16 ATGVLREFNEAGVLEAADVHTAQRLCALGAESDETVALAVALAVRALRTGSVCVELATVA 75 Query 72 RVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDR---LLYLDRYWREEEQVCADLL 128 +L WP+PA WLAAVRAS L+A VL +YD+ LLYLDRYWREEEQVCADLL Sbjct 76 DGTESPELSWPEPAAWLAAVRASSLVAKQ-VLRIYDNDSGGLLYLDRYWREEEQVCADLL 134 Query 129 ALLTSRRPA-GVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALV 187 AL T + + +P L RLFP D+QR AAEIAL+Q VTVLTGGPGTGKTTTVARLLAL+ Sbjct 135 ALSTPQDGSVELPGLERLFPPDHDDQRAAAEIALTQAVTVLTGGPGTGKTTTVARLLALL 194 Query 188 AEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGA 247 AEQA +G RIALAAPTGKAAARL EAV +A L+ D+ARL L A TLH LLG+ Sbjct 195 AEQAAASGRRPLRIALAAPTGKAAARLTEAVAGVVAGLEPKDQARLAGLQASTLHSLLGS 254 Query 248 KPG--ARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVE 305 +PG ARF+ +R NRLPH+VIVVDETSMVSLTLMARL EAVRP ARLILVGD DQLASVE Sbjct 255 RPGNSARFKHNRGNRLPHDVIVVDETSMVSLTLMARLLEAVRPTARLILVGDPDQLASVE 314 Query 306 AGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIE 365 AGAVLADLVDG + R VA L T+HR+ K IG LA AIRAGDGD V+ LLRSG+E E Sbjct 315 AGAVLADLVDGLAARPGTRVATLVTAHRYKKAIGELASAIRAGDGDTVIELLRSGDEHRE 374 Query 366 FVDDEDPAP---RLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHW 422 ++D PA +L A+ VPHALR+R+AALLG + AL LDEHRLLCAHRDGP G HW Sbjct 375 WLDASTPAALGDQLAAIAVPHALRVRQAALLGDAGEALRNLDEHRLLCAHRDGPHGANHW 434 Query 423 NRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGAS 482 N +++ W++E+TG P W WYAGRPLLVTANDYGL V NGDTGVV+A GLRAVI+ AS Sbjct 435 NHQIRRWVSEQTGDPVWADWYAGRPLLVTANDYGLGVRNGDTGVVVARADGLRAVIATAS 494 Query 483 GPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKV 542 G +D ATGRL DV++M+AMTIHKSQGS+ D VTVLMP +SRLLTREL YTAVTRAK +V Sbjct 495 GAVDFATGRLSDVDSMYAMTIHKSQGSEADVVTVLMPPVESRLLTRELFYTAVTRAKHQV 554 Query 543 RVVGSEASVRAAIARRAVRASGLRMRLQ 570 RV+GSE +RAA+ RRAVRASGL +RL+ Sbjct 555 RVIGSEDEIRAALDRRAVRASGLALRLR 582 >gi|145225707|ref|YP_001136385.1| exodeoxyribonuclease V subunit alpha [Mycobacterium gilvum PYR-GCK] gi|315446058|ref|YP_004078937.1| DNA helicase/exodeoxyribonuclease V, subunit alpha [Mycobacterium sp. Spyr1] gi|145218193|gb|ABP47597.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Mycobacterium gilvum PYR-GCK] gi|315264361|gb|ADU01103.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Mycobacterium sp. Spyr1] Length=555 Score = 595 bits (1535), Expect = 6e-168, Method: Compositional matrix adjust. Identities = 366/552 (67%), Positives = 427/552 (78%), Gaps = 7/552 (1%) Query 22 AGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPW 81 A V + +D+HVAQRL L +SD VALAVA+AVRA+R+GSVCVDL ++A G +LPW Sbjct 7 AEVFEPADIHVAQRLTELGRDSDPTVALAVALAVRAVRSGSVCVDLRTVAAQVGVPELPW 66 Query 82 PDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPD 141 PDP WL+ V ASPL A+ V+ L D LLYLDRYWREEEQV D++ALL+S VP Sbjct 67 PDPDGWLSTVGASPL-AEHKVVRL-DGDLLYLDRYWREEEQVRDDVVALLSSPPRTAVPG 124 Query 142 LRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRI 201 L RLFP G++EQR AAE AL++ +TVLTGGPGTGKTTTVARLLA AEQAELAG P PR+ Sbjct 125 LERLFPAGWEEQRAAAEAALTRSLTVLTGGPGTGKTTTVARLLAAFAEQAELAGGPPPRM 184 Query 202 ALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQN 259 ALAAPTGKAAARL +AV+ E+ +L A DRARL L A T+HRLLG++P +RFR R N Sbjct 185 ALAAPTGKAAARLQDAVQAEVDRLSAVDRARLAGLRATTMHRLLGSRPDTSSRFRHHRGN 244 Query 260 RLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSV 319 RLPH+VIVVDETSMVSLT+MARL EAVRP RL+ VGD DQLASV+AGAVLADLVDG Sbjct 245 RLPHDVIVVDETSMVSLTMMARLLEAVRPDTRLLFVGDPDQLASVDAGAVLADLVDGLG- 303 Query 320 RDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAV 379 +A V +L TSHRFG+ IG LA AIR+GD DA + +LR+G + I ++D +D A LR Sbjct 304 --EAGVVELTTSHRFGERIGALALAIRSGDADATVEVLRAGGDAIGWLDTDDAADALRGP 361 Query 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 LV A LREAALLG + AL LD HRLLCAHR GP GV HWNR+++ WLAE TGQ W Sbjct 362 LVDRAADLREAALLGDGETALRILDGHRLLCAHRRGPFGVAHWNRQIERWLAERTGQSIW 421 Query 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 + YAGRPLLVTANDYGL VYNGDTGVV+A P GLRA I + ++A GRLG+VETM Sbjct 422 SQPYAGRPLLVTANDYGLGVYNGDTGVVVAAPEGLRAHIGTPASSRELAVGRLGEVETMF 481 Query 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRA 559 AMTIHKSQGSQ DEVTVLMP +DSRLLTREL YTAVTRAK +V+VVG+EASVRAA+ RRA Sbjct 482 AMTIHKSQGSQADEVTVLMPPQDSRLLTRELFYTAVTRAKERVQVVGTEASVRAAVGRRA 541 Query 560 VRASGLRMRLQS 571 VRASGL RL + Sbjct 542 VRASGLARRLST 553 >gi|284031862|ref|YP_003381793.1| exodeoxyribonuclease V subunit alpha [Kribbella flavida DSM 17836] gi|283811155|gb|ADB32994.1| exodeoxyribonuclease V, alpha subunit [Kribbella flavida DSM 17836] Length=591 Score = 588 bits (1515), Expect = 1e-165, Method: Compositional matrix adjust. Identities = 359/584 (62%), Positives = 421/584 (73%), Gaps = 26/584 (4%) Query 5 DVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVC 64 D A+ A+G++R FN AGV+ +DVHVA RL + E+DERVALA A+ RA+RAGS+C Sbjct 9 DSTLALAATGVLRDFNTAGVILAADVHVATRLTTMLEETDERVALACALVARAVRAGSIC 68 Query 65 VDLLSIARVAGHD--DLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQ 122 +DL + G D +L WP +WL A+RASPLLA P LHL D RL Y DRYWREEEQ Sbjct 69 LDLAEVRDEVGEDGAELDWPVLDEWLTALRASPLLAAPYPLHLEDTRL-YFDRYWREEEQ 127 Query 123 VCADLLALLTSRRPAGVP------------DLRRLFP-TGFDEQRRAAEIALSQGVTVLT 169 V DL RR AG P L RLFP + + EQR AA+ A Q TVLT Sbjct 128 VEQDL------RRRAGRPAPVIANEAVLQAGLGRLFPGSSYVEQRAAAQTAARQWTTVLT 181 Query 170 GGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMA-KLDAT 228 GGPGTGKTTTVA LLAL+AEQAE+AG+ P IAL APTGKAAARL EAVRREM+ +L A Sbjct 182 GGPGTGKTTTVAGLLALLAEQAEIAGDRSPWIALTAPTGKAAARLEEAVRREMSGRLSAE 241 Query 229 DRARLGDLHAVTLHRLLGAKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAV 286 D ARLGD HA TLH LLG +P +RFR DR NRLPH+++VVDETSMVSLT+MARL EAV Sbjct 242 DTARLGDFHARTLHMLLGRRPDSSSRFRHDRDNRLPHDIVVVDETSMVSLTMMARLLEAV 301 Query 287 RPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIR 346 RPGARLILVGD DQLAS+EAGAVLADLVDG A+LRTSHRFG IG LA A+R Sbjct 302 RPGARLILVGDPDQLASIEAGAVLADLVDGLVAGGHIAAAELRTSHRFGSEIGALALAVR 361 Query 347 AGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEH 406 D VL +LR G +R+ FV+D+DP LR+ L+P L +R+AA G +D ALA LD H Sbjct 362 EDRPDNVLAVLRGGGDRVHFVEDDDPRETLRSALLPDVLAIRDAAEAGDADAALAALDRH 421 Query 407 RLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGV 466 RLLCAHR+GP GV HWNR V+ W+ EET P W WY GRP+LVTANDY L +YNGD GV Sbjct 422 RLLCAHREGPWGVQHWNRTVERWITEETEDPLWDTWYVGRPVLVTANDYALGIYNGDVGV 481 Query 467 VLAGPTG-LRAVISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRL 525 + P G LR I + G LD A RLG++ET+HAMTIHK+QGSQ EVTVLMP E+SRL Sbjct 482 TIRRPDGSLRVCIDSSRGRLDFAPSRLGNIETLHAMTIHKAQGSQAAEVTVLMPNEESRL 541 Query 526 LTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRL 569 LTREL YTA+TRA+ +VRVVG E SVR A++RRA+RA+GLR RL Sbjct 542 LTRELFYTAITRAENRVRVVGDEQSVRLALSRRALRATGLRQRL 585 >gi|296165830|ref|ZP_06848325.1| exodeoxyribonuclease V alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898816|gb|EFG78327.1| exodeoxyribonuclease V alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=351 Score = 515 bits (1326), Expect = 8e-144, Method: Compositional matrix adjust. Identities = 269/351 (77%), Positives = 298/351 (85%), Gaps = 2/351 (0%) Query 217 AVRREMAKLDATDRARLGDLHAVTLHRLLGAKP--GARFRQDRQNRLPHNVIVVDETSMV 274 AV E+ +LDA DRARL L A TLHRLLGA+P RF+ +R NRLPH+VIVVDETSMV Sbjct 1 AVAAEVRRLDAADRARLTGLPATTLHRLLGARPDTSVRFKHNRGNRLPHDVIVVDETSMV 60 Query 275 SLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRF 334 SLT+MARL EAVRP RLILVGD DQLASVEAGAVLADLVDG + RDD VA LRT HRF Sbjct 61 SLTMMARLLEAVRPDTRLILVGDPDQLASVEAGAVLADLVDGLTARDDVRVAALRTPHRF 120 Query 335 GKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLG 394 G+ IG LAEAIR GD D VLGLLR+G E IE++D + PA RLRAVLVPHALR+REAALLG Sbjct 121 GESIGALAEAIRVGDADRVLGLLRAGGEHIEWLDSDGPADRLRAVLVPHALRVREAALLG 180 Query 395 ASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLLVTAND 454 A++VALATLDEHRLLCAHR GP GV HWNR+V+ WL+EETGQP + WYAGRP+LVTAND Sbjct 181 ATEVALATLDEHRLLCAHRQGPYGVSHWNRQVERWLSEETGQPVPSAWYAGRPVLVTAND 240 Query 455 YGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEV 514 YGL+VYNGDTGVV+AGP GLRAVI+GA+G L AT RL D+ETMHAMTIHKSQGSQ DEV Sbjct 241 YGLKVYNGDTGVVVAGPDGLRAVIAGAAGTLGFATSRLTDIETMHAMTIHKSQGSQADEV 300 Query 515 TVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGL 565 TVLMP EDSRLLTREL YTAVTRAK +VRV GSEA+VRAAI RRAVRA+GL Sbjct 301 TVLMPPEDSRLLTRELFYTAVTRAKARVRVAGSEAAVRAAIERRAVRATGL 351 >gi|289749128|ref|ZP_06508506.1| exonuclease V alpha subunit recD [Mycobacterium tuberculosis T92] gi|289689715|gb|EFD57144.1| exonuclease V alpha subunit recD [Mycobacterium tuberculosis T92] Length=228 Score = 448 bits (1152), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 227/228 (99%), Positives = 227/228 (99%), Gaps = 0/228 (0%) Query 222 MAKLDATDRARLGDLHAVTLHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMAR 281 M KLDATDRARLGDLHAVTLHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMAR Sbjct 1 MTKLDATDRARLGDLHAVTLHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMAR 60 Query 282 LAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTL 341 LAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTL Sbjct 61 LAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTL 120 Query 342 AEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALA 401 AEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALA Sbjct 121 AEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALA 180 Query 402 TLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLL 449 TLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLL Sbjct 181 TLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLL 228 >gi|229494323|ref|ZP_04388086.1| exodeoxyribonuclease V, alpha subunit [Rhodococcus erythropolis SK121] gi|229318685|gb|EEN84543.1| exodeoxyribonuclease V, alpha subunit [Rhodococcus erythropolis SK121] Length=622 Score = 437 bits (1123), Expect = 4e-120, Method: Compositional matrix adjust. Identities = 293/628 (47%), Positives = 388/628 (62%), Gaps = 71/628 (11%) Query 3 LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGS 62 +T+ A A G+VR FN+AGVL +DVHVA R+C+L GE+ E V LA A+AVRA+R+GS Sbjct 1 MTEAQLAQRAKGIVRIFNEAGVLVAADVHVATRVCSLGGETSEEVMLAAALAVRAVRSGS 60 Query 63 VCVDLLSIARVAGHD-------DLPWPDPADWLAAVRASPLL----ADP----PVLHLYD 107 VC+DL + V+ + LPWP+P++ +AA+R SPL+ A P ++ D Sbjct 61 VCLDLQRMRDVSVDNATEEELTSLPWPEPSEIVAALRLSPLVIGGNAGPLRPLRLVDTDD 120 Query 108 DRLLYLDRYWREEEQVCADLLALLTSRRPAGVPDLRRLFPTGF----------DEQRRAA 157 LLYLDRY+ +E+ + L ++ PA + +R + F D QR AA Sbjct 121 GELLYLDRYFLQEQTIRRVLDERASTWPPADLKAVRTRLDSLFVDENGPTIAPDRQRIAA 180 Query 158 EIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEA 217 +A +Q TV+ GGPGTGKT TVAR+LAL++E EL RI LAAPTGKAAARL E+ Sbjct 181 ALAATQWTTVIAGGPGTGKTHTVARILALLSE--ELGSN--ARIGLAAPTGKAAARLQES 236 Query 218 VRREMAKLDATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNVIVVDETSMVS 275 VR + A L + +L A+TLHRLLG + G +RF+ + NRLP++V+VVDETSMVS Sbjct 237 VREQTASLGLPE-----ELAAMTLHRLLGWQRGSSSRFKYNATNRLPYDVVVVDETSMVS 291 Query 276 LTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLV-----------------DGFS 318 LTLMARL EAVRP ARL+LVGD DQL SV+AGAVLADLV D + Sbjct 292 LTLMARLLEAVRPDARLLLVGDPDQLTSVDAGAVLADLVARPVEVSGNPALTQLVGDDLT 351 Query 319 V--RDDALVA-----------QLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIE 365 ++AL A QL RF I +LA A+RAGD VL +LRSG+ + Sbjct 352 ATGSEEALSADEQDRLRGGIIQLSRGRRFDGTIASLARAVRAGDSAEVLRILRSGDPAVS 411 Query 366 FVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRR 425 F ED LRA +V + + +A +G + AL L+ HRLLCAHRDGP GV W ++ Sbjct 412 FHSPED-VDALRADIVASSEVVTASAEVGDAIGALKGLESHRLLCAHRDGPYGVGRWAQQ 470 Query 426 VQAWLAEETGQ--PPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLR-AVISGAS 482 W+ +GQ P T WY G+PLLVTANDY ++YNGD GV++ G+ A S Sbjct 471 AMEWVGTASGQFLDP-TRWYPGQPLLVTANDYESKIYNGDAGVIVQREDGVPIAAFQRGS 529 Query 483 GPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKV 542 + +L V+T++AMTIH+SQGSQ D V+V++P E S LLTRELLYTA+TRA+ V Sbjct 530 DAFLIHPSQLSSVQTVYAMTIHRSQGSQYDTVSVMLPAEASSLLTRELLYTAITRARNHV 589 Query 543 RVVGSEASVRAAIARRAVRASGLRMRLQ 570 RV+G+E SVRA + R+ +RASGLR ++ Sbjct 590 RVIGTEDSVRAGVQRQVLRASGLRREIR 617 >gi|226304348|ref|YP_002764306.1| exodeoxyribonuclease V alpha chain [Rhodococcus erythropolis PR4] gi|226183463|dbj|BAH31567.1| exodeoxyribonuclease V alpha chain [Rhodococcus erythropolis PR4] Length=622 Score = 436 bits (1122), Expect = 4e-120, Method: Compositional matrix adjust. Identities = 295/628 (47%), Positives = 389/628 (62%), Gaps = 71/628 (11%) Query 3 LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGS 62 +T+ A A G+VR FN+AGVL +DVHVA R+C+L GE+ E V LA A+AVRA+R+GS Sbjct 1 MTEAQLAQRAKGIVRIFNEAGVLVAADVHVAMRVCSLGGETSEEVMLAAALAVRAVRSGS 60 Query 63 VCVDLLSIARV----AGHDD---LPWPDPADWLAAVRASPLL----ADP----PVLHLYD 107 VC+DL + V A D+ LPWP+P++ +AA+R SPL+ A P ++ D Sbjct 61 VCLDLRRMRDVSVDNATEDELTSLPWPEPSEIVAALRLSPLVIGGNAGPLRPLRLVDTDD 120 Query 108 DRLLYLDRYWREEEQVCADLLALLTSRRPAGVPDLRRLFPTGF----------DEQRRAA 157 LLYLDRY+ +E+ + L ++ PA + +R + F D QR AA Sbjct 121 GELLYLDRYFLQEQTIRRVLDERASTWPPADLKAVRTRLDSLFVDENGPTTAPDRQRIAA 180 Query 158 EIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEA 217 +A +Q TV+ GGPGTGKT TVAR+LAL++E EL + RI LAAPTGKAAARL E+ Sbjct 181 ALAATQWTTVIAGGPGTGKTHTVARILALLSE--ELGS--KARIGLAAPTGKAAARLQES 236 Query 218 VRREMAKLDATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNVIVVDETSMVS 275 VR + A L + +L A+TLHRLLG + G +RF+ + NRLP++V+VVDETSMVS Sbjct 237 VREQTASLGLPE-----ELAAMTLHRLLGWQRGSSSRFKYNATNRLPYDVVVVDETSMVS 291 Query 276 LTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLV-----------------DGFS 318 LTLMARL EAVRP ARL+LVGD DQL SV+AGAVLADLV D + Sbjct 292 LTLMARLLEAVRPDARLLLVGDPDQLTSVDAGAVLADLVARPVEVSGNPALTQLVGDDLT 351 Query 319 V--RDDALVA-----------QLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIE 365 ++AL A QL RF I +LA A+RAGD VL +LRSG+ + Sbjct 352 ATGSEEALSADEQDRLRGGIIQLSRGRRFDGTIASLARAVRAGDSAEVLRILRSGDPAVS 411 Query 366 FVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRR 425 F ED LRA +V + + +A G + AL L+ HRLLCAHRDGP GV W ++ Sbjct 412 FHSPED-VDALRADIVASSEVVTRSAEEGDAIGALKGLESHRLLCAHRDGPYGVGRWAQQ 470 Query 426 VQAWLAEETGQ--PPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLR-AVISGAS 482 W+ +GQ P T WY G+PLLVTANDY ++YNGD GV++ G+ A S Sbjct 471 AMEWVGTASGQFLDP-TRWYPGQPLLVTANDYEAKIYNGDAGVIVQREDGVPIAAFQRGS 529 Query 483 GPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKV 542 + +L V+T++AMTIH+SQGSQ D V+V++P E S LLTRELLYTA+TRA+ V Sbjct 530 DAFLIHPSQLSSVQTVYAMTIHRSQGSQYDTVSVMLPAEASSLLTRELLYTAITRARNHV 589 Query 543 RVVGSEASVRAAIARRAVRASGLRMRLQ 570 RV+G+E SVRA + R+ +RASGLR ++ Sbjct 590 RVIGTEDSVRAGVQRQVLRASGLRREIR 617 >gi|325673658|ref|ZP_08153349.1| exodeoxyribonuclease V alpha subunit [Rhodococcus equi ATCC 33707] gi|325555679|gb|EGD25350.1| exodeoxyribonuclease V alpha subunit [Rhodococcus equi ATCC 33707] Length=614 Score = 433 bits (1113), Expect = 5e-119, Method: Compositional matrix adjust. Identities = 300/625 (48%), Positives = 376/625 (61%), Gaps = 74/625 (11%) Query 3 LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGS 62 + + A G++R FN+AGVL+ +DVHVA RL L GE+ E V LA A+AVRA+R+GS Sbjct 1 MIEARVAQRGKGVLREFNEAGVLEAADVHVALRLATLGGETREPVHLATALAVRAVRSGS 60 Query 63 VCVDLLSIARVAGHDD-------LPWPDPADWLAAVRASPLL----ADPPVLHLYDDRLL 111 VC+DL I V ++ LPWPD A + +SPL+ A P D LL Sbjct 61 VCLDLSRIREVTVDEEFEVDPAALPWPDDAVVAEGLASSPLVVGGEAGPLRPLRLVDGLL 120 Query 112 YLDRYWREEEQVCADLLALLTSRRP--------AGVPDLRRLF-----PT-GFDEQRRAA 157 YLDRY+R+E Q +L P AG+ +L R F P+ D QR AA Sbjct 121 YLDRYYRQE-QTVRRILDERAHGHPTVDEDLLRAGLDELFRDFADPSRPSDAPDRQRIAA 179 Query 158 EIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEA 217 +A + +V+ GGPGTGKT TVAR+LAL+A Q +P RI LAAPTGKAAARL E+ Sbjct 180 AVAATHWTSVIAGGPGTGKTHTVARVLALLARQ-----QPGLRIGLAAPTGKAAARLQES 234 Query 218 VRREMAKLDATDRARLGDLHAVTLHRLLGAKPG-ARFRQDRQNRLPHNVIVVDETSMVSL 276 VR E A+L +L A+TLHR+LG + G +RFR + N LP++VIVVDETSMVSL Sbjct 235 VR-EQAELVGLR----SELPAMTLHRMLGWQRGTSRFRFNETNHLPYDVIVVDETSMVSL 289 Query 277 TLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVD-----------------GFSV 319 T+M RL EAVRP ARL+LVGD DQL SV+AGAVLADLV S Sbjct 290 TMMCRLLEAVRPEARLVLVGDPDQLTSVDAGAVLADLVARPVTGVENPVLARVVGADLSA 349 Query 320 RDDALVAQLRTSHR---------------FGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 DD A L S R FG I LA A+R GD D L +LRSG + Sbjct 350 SDDPAEAALSASERDRLRGGVIRLSRGRRFGGAIAQLAVAVRDGDEDRTLEILRSGAADV 409 Query 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 FVD ED A LRA +V + AAL G + A+ ++HRLLCAHR+GP G W R Sbjct 410 SFVDPEDLAG-LRADVVSTSAEATAAALAGDAAGAVRASEKHRLLCAHREGPFGASWWAR 468 Query 425 RVQAWLAEETGQPPWTP--WYAGRPLLVTANDYGLRVYNGDTGVVLAGPTG-LRAVISGA 481 W+ E TG P WYAG+PL+VTAND+ +R+YNGDTGVV+ G G L A + Sbjct 469 NAMTWIGEATGSR-LDPDRWYAGQPLMVTANDHEMRIYNGDTGVVVEGSDGDLVAAFARG 527 Query 482 SGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRK 541 P V L V+T++AMTIH+SQGSQ D V+V++P E+S LLTRELLYTA+TRA+ Sbjct 528 EEPYLVHLSHLASVQTVYAMTIHRSQGSQYDVVSVILPGEESSLLTRELLYTAITRARTH 587 Query 542 VRVVGSEASVRAAIARRAVRASGLR 566 VR+VG+EA+VRAA+ RR +RASGLR Sbjct 588 VRIVGTEAAVRAAVGRRVLRASGLR 612 >gi|312139064|ref|YP_004006400.1| exodeoxyribonuclease v alpha subunit recd [Rhodococcus equi 103S] gi|311888403|emb|CBH47715.1| exodeoxyribonuclease V alpha subunit RecD [Rhodococcus equi 103S] Length=618 Score = 425 bits (1092), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 297/629 (48%), Positives = 374/629 (60%), Gaps = 78/629 (12%) Query 3 LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGS 62 + + A G++R FN+AGVL+ +DVHVA RL L GE+ E V LA A+AVRA+R+GS Sbjct 1 MIEARVAQRGKGVLREFNEAGVLEAADVHVALRLAMLGGETREPVHLATALAVRAVRSGS 60 Query 63 VCVDLLSIARVAGHDD-------LPWPDPADWLAAVRASPLL----ADPPVLHLYDDRLL 111 VC+DL I V ++ LPWPD A + +SPL+ A P D LL Sbjct 61 VCLDLSRIREVTVDEEFQIDPAALPWPDDAVVAEGLASSPLVVGGDAGPLRPLRLVDGLL 120 Query 112 YLDRYWREEEQVCADLLALLTSRRP--------AGVPDLRRLF-----PT-GFDEQRRAA 157 YLDRY+R+E Q +L P AG+ +L R F P+ D QR AA Sbjct 121 YLDRYYRQE-QTVRRILDERAHGHPTVDEDLLRAGLDELFRDFADPSRPSDAPDRQRIAA 179 Query 158 EIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEA 217 +A + +V+ GGPGTGKT TVAR+LAL+ Q +P RI LAAPTGKAAARL E+ Sbjct 180 AVAATHWTSVIAGGPGTGKTHTVARVLALLERQ-----QPGLRIGLAAPTGKAAARLQES 234 Query 218 VRREMAKLDATDRARLGDLHAVTLHRLLGAKPG-ARFRQDRQNRLPHNVIVVDETSMVSL 276 VR E A L +L A+TLHR+LG + G +RFR + N LP++VIVVDETSMVSL Sbjct 235 VR-EQADLVGLR----SELPAMTLHRMLGWQRGTSRFRFNETNHLPYDVIVVDETSMVSL 289 Query 277 TLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVD-----------------GFSV 319 T+M RL EAVRP ARL+LVGD DQL SV+AGAVLADLV S Sbjct 290 TMMCRLLEAVRPEARLVLVGDPDQLTSVDAGAVLADLVARPVTGVENPVLARVVGADLSA 349 Query 320 RDDALVAQLRTSHR---------------FGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 DD A L S R FG I LA A+R GD D L +LRSG + Sbjct 350 SDDPAEAALSASERDRLRGGVIRLSRGRRFGGAIAQLAVAVRDGDEDRTLEILRSGAADV 409 Query 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 FVD ED A LRA +V + + AAL G + A+ ++HRLLCAHR+GP G W R Sbjct 410 SFVDPEDLAG-LRADVVSTSAEVTSAALAGDAAGAVRASEKHRLLCAHREGPFGASWWAR 468 Query 425 RVQAWLAEETGQPPWTP--WYAGRPLLVTANDYGLRVYNGDTGVVLAGPTG-----LRAV 477 W+ E G P WYAG+PL+VTAND+ +R+YNGDTGVV+A + L A Sbjct 469 NAMTWIGEAMGSR-LDPDRWYAGQPLMVTANDHEMRIYNGDTGVVVADDSDGSDGDLVAA 527 Query 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 + P V L V+T++AMTIH+SQGSQ D V+V++P E+S LLTRELLYTA+TR Sbjct 528 FARGEEPYLVHLSHLASVQTVYAMTIHRSQGSQYDVVSVILPGEESSLLTRELLYTAITR 587 Query 538 AKRKVRVVGSEASVRAAIARRAVRASGLR 566 A+ VR+VG+EA+VRAA+ RR +RASGLR Sbjct 588 ARTHVRIVGTEAAVRAAVGRRVLRASGLR 616 >gi|119714520|ref|YP_921485.1| DNA helicase/exodeoxyribonuclease V subunit alpha [Nocardioides sp. JS614] gi|119535181|gb|ABL79798.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Nocardioides sp. JS614] Length=584 Score = 424 bits (1091), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 290/582 (50%), Positives = 359/582 (62%), Gaps = 29/582 (4%) Query 5 DVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVC 64 D A A+G++ FN AGVL SDVHVA R+ L GE+DER+ LAVA+ VRA+R GSVC Sbjct 12 DWRIATGATGLLATFNAAGVLTSSDVHVATRIGVLGGETDERMLLAVALTVRAVRRGSVC 71 Query 65 VDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVC 124 +DL +A A DLPWPD +W V SPL+ V +D LLYLDRY R E QV Sbjct 72 LDLAGVAATA--PDLPWPD--EW--PVAGSPLVHAGVVR--WDHELLYLDRYHRLERQVH 123 Query 125 ADLLALLT--------SRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGK 176 DL A L R A L RL F E++RAA +A + T + G Sbjct 124 DDLAARLALAPPAVDEQRLEAA---LARLGGGHFSEEQRAAVVAAVRRRTTILTGGPGTG 180 Query 177 TTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDAT---DRARL 233 TT L + R IALAAPTGKAA RL EAV E+A + A + Sbjct 181 KTTTVARLLALLADQAAGRGSRLSIALAAPTGKAATRLQEAVVTELAAVATAWPEAPALV 240 Query 234 GDLHAVTLHRLLGAKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGAR 291 G L +TLHRLLG +P RFR DR NRL ++V+VVDE+SMV LT+M RL EA+RP +R Sbjct 241 GRLDGLTLHRLLGWRPDNATRFRHDRANRLKYDVVVVDESSMVELTMMGRLLEALRPDSR 300 Query 292 LILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGD 351 L+LVGD QL SV AGAVL+DLV G+ R D+ VA L T+ R + I +LA A+R+GD D Sbjct 301 LVLVGDPQQLTSVGAGAVLSDLVAGYEGRPDSPVAALSTNFRSEEDIKSLAAALRSGDAD 360 Query 352 AVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDV----ALATLDEHR 407 V+ +LR+ E++ +V+ D A + A L P +L A A D ALA LD +R Sbjct 361 EVIAVLRAPSEQVSWVETSDAA-EVEAALRPDSLASARAVWAAARDEDAERALAELDRYR 419 Query 408 LLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVV 467 LLCAHR+G GV WN V+ WLAE+ + WY GRPLLVT+NDY L VYNG++GVV Sbjct 420 LLCAHREGLYGVRRWNHLVERWLAEDPDVEIYDEWYVGRPLLVTSNDYALDVYNGESGVV 479 Query 468 LAGPTGLRAVISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLT 527 + R ++G+ + A GRL VETMHAMTIHKSQGSQ D V+VL+P E SRLLT Sbjct 480 VRQDQRRRVFVAGSERLKEFAPGRLEAVETMHAMTIHKSQGSQADRVSVLLPDEGSRLLT 539 Query 528 RELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRL 569 EL YTA+TRA+ VRVVGSEA+VRAA+ RA RA+GLR RL Sbjct 540 LELFYTAITRARHHVRVVGSEAAVRAAVDTRAQRATGLRARL 581 >gi|334336345|ref|YP_004541497.1| exodeoxyribonuclease V, alpha subunit [Isoptericola variabilis 225] gi|334106713|gb|AEG43603.1| exodeoxyribonuclease V, alpha subunit [Isoptericola variabilis 225] Length=644 Score = 422 bits (1085), Expect = 9e-116, Method: Compositional matrix adjust. Identities = 323/628 (52%), Positives = 387/628 (62%), Gaps = 66/628 (10%) Query 5 DVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVC 64 D A+ A ++ N+AG++ +DVHVA+RL LAGE DERV LAVA+AVRA+R+GSVC Sbjct 19 DPRLALHAGPLLAEHNRAGIVSAADVHVARRLGRLAGEPDERVLLAVALAVRAVRSGSVC 78 Query 65 VDL-----LSIARV---AGHDDLPWPDPADWLAAVRASPLLA---DPPVLH--LYDDRLL 111 V+L L++ A DL WP+PA+W AAV ASPL+A D P + D L Sbjct 79 VELDDREALAVPEAEDAAPAGDLRWPEPAEWRAAVEASPLVAVGPDGPADRPARWVDGRL 138 Query 112 YLDRYWREEEQVCADLLALLTSRRP--AGV------PDLRRLFPTGFD-EQRRAAEIALS 162 YLDRYWR E V ++ A L P AG+ +RRLFP D QR AA AL Sbjct 139 YLDRYWRHEMVVRREVDARLDGLAPDAAGLDVDRAAAAVRRLFPAAGDTRQRLAAATALL 198 Query 163 QGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRP-RIALAAPTGKAAARLAEAVRRE 221 VTVLTGGPGTGKTTTVARLLA++ + + G+ P R+ALAAPTGKAAARL EAV Sbjct 199 ARVTVLTGGPGTGKTTTVARLLAVLQD---VLGDGGPLRVALAAPTGKAAARLQEAVAEA 255 Query 222 MAKLDATDRARLGDLHAVTLHRLLGAKPGA--RFRQDRQNRLPHNVIVVDETSMVSLTLM 279 + LDA DR R+G A T+HRLLG +PG+ RFR D + LPH+V+VVDETSMVSL LM Sbjct 256 LDGLDAADRERVGSPAATTMHRLLGWRPGSSTRFRHDAGHHLPHDVVVVDETSMVSLPLM 315 Query 280 ARLAEAVRPGARLILVGDADQLASVEAGAVLADLV------------------------- 314 ARL EA+RP ARL+LVGD DQLASVEAGAVL DLV Sbjct 316 ARLLEALRPDARLVLVGDPDQLASVEAGAVLGDLVARPPVADALPTALARLVPGDVPGGA 375 Query 315 --DGFSVRD-DALVAQLRTSHRF--GKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVD- 368 DG +R V +L T HR I LA A+R GD D L LLR+G +EFV+ Sbjct 376 DGDGEDLRRLRNGVVRLVTVHRQRPDSAILPLATAVREGDADEALRLLRAGGADVEFVEV 435 Query 369 -----DEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWN 423 DED LRA V L AA G + AL L+ HRLL AHR GP GV HW+ Sbjct 436 AGERPDEDEVAALRADAVGCGGALVAAARAGDAGGALRALERHRLLLAHRRGPAGVAHWD 495 Query 424 RRVQAWLAEETGQPP-WTPWYAGRPLLVTANDYGLRVYNGDTGVVLA-GPTGLRAVISGA 481 R V+ W+AE G WYAGRPLLVT ND +YNGDTGVV+A G GL A Sbjct 496 RLVEEWVAEAVGDDGGHGAWYAGRPLLVTTNDRDTGLYNGDTGVVVADGRGGLVAAFGKP 555 Query 482 SGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRK 541 + PL V RL DVET+HAMT+H+ QGSQ D VT+++P S LLTRELLYTAVTRA+ Sbjct 556 ASPLLVRPHRLPDVETVHAMTVHRGQGSQFDRVTLVLPPATSPLLTRELLYTAVTRARSH 615 Query 542 VRVVGSEASVRAAIARRAVRASGLRMRL 569 VR++G+E +VRAA+ R RASGLR L Sbjct 616 VRILGTEDAVRAAVGRPVRRASGLRRPL 643 >gi|336118819|ref|YP_004573591.1| exodeoxyribonuclease V subunit alpha [Microlunatus phosphovorus NM-1] gi|334686603|dbj|BAK36188.1| exodeoxyribonuclease V alpha chain [Microlunatus phosphovorus NM-1] Length=617 Score = 421 bits (1083), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 309/623 (50%), Positives = 388/623 (63%), Gaps = 67/623 (10%) Query 4 TDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSV 63 T++ A A+G++ FN AGVLD++DVHVA + ++GE DERVALA+A+AVRALR GSV Sbjct 6 TEIAVASRAAGLLATFNTAGVLDLADVHVATAVTRISGEPDERVALALALAVRALRLGSV 65 Query 64 CVDLLSIARVA------GHD--DLPWPDPADWLAAVRASPLLADPPV------LHLYDDR 109 C+DL ++A G D +LPWPDP DW A V SP +AD L L + Sbjct 66 CIDLTTVAHEVFEAAEEGLDVAELPWPDPDDWSAQVSRSPAVADGAEAADGRPLRLVSGK 125 Query 110 LLYLDRYWREEEQVCADLLALLTSRRPAGVPD---------LRRLF------PTGFDEQR 154 L YL+RYWR+EE V L+ RR A P+ L RLF P D QR Sbjct 126 L-YLERYWRQEESVRRQLV----DRRAAPPPEVDVDRLAVALDRLFDRGGLGPEEEDLQR 180 Query 155 RAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARL 214 RAAE+ Q VTVL GGPGTGKTTTVA++LA++A+Q +PRIALAAPTGKAAARL Sbjct 181 RAAEVCAHQWVTVLAGGPGTGKTTTVAKVLAMLADQPGR----QPRIALAAPTGKAAARL 236 Query 215 AEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNVIVVDETS 272 EA+ + +L D AR+ +L A+TLHRLLG P RFR NRLP++V+VVDE S Sbjct 237 TEALSQARRQLAPEDAARVAELSALTLHRLLGWLPSTRGRFRHHAGNRLPYDVVVVDEMS 296 Query 273 MVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDAL-------- 324 MVSLT+MARL EAVRP ARL+LVGD DQL+SVEAGAVLAD+ V DAL Sbjct 297 MVSLTMMARLLEAVRPDARLVLVGDPDQLSSVEAGAVLADITGALGV--DALGVDGGGVD 354 Query 325 ----------VAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAP 374 V +L+ + R+G I LA A+R D DA + +LR G + + F + + P Sbjct 355 AGRTDGGRRSVVRLQRTWRYGGAIEDLARAVRESDEDAAIEVLRRGADDVVFTETDLAHP 414 Query 375 R------LRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQA 428 R L A + LR+AA+ G AL LD HRLLCAHR GP GV W++ + Sbjct 415 RPAGIEPLAAAVGAAGKELRDAAMAGDVTGALIALDRHRLLCAHRHGPYGVSRWSQEAER 474 Query 429 WLAEET-GQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDV 487 WLAE G WY GRPLL+T NDY L ++NGDTGVV+A G+RA S P+ + Sbjct 475 WLAEAVPGYGEDGEWYLGRPLLITVNDYDLNLFNGDTGVVVATVGGVRAAFGRGSEPMLI 534 Query 488 ATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGS 547 + RL V+T HAMT+H++QGSQ D V+ ++P DS LLTRELLYTAVTRA +V+V G+ Sbjct 535 SPVRLDAVQTTHAMTVHRAQGSQFDIVSFVLPPPDSPLLTRELLYTAVTRASHRVQVFGT 594 Query 548 EASVRAAIARRAVRASGLRMRLQ 570 E +VR A+ R A RASGLR RL Sbjct 595 EEAVRRAVRRPANRASGLRGRLS 617 >gi|111018833|ref|YP_701805.1| exodeoxyribonuclease V alpha chain [Rhodococcus jostii RHA1] gi|110818363|gb|ABG93647.1| probable exodeoxyribonuclease V alpha chain [Rhodococcus jostii RHA1] Length=622 Score = 419 bits (1077), Expect = 7e-115, Method: Compositional matrix adjust. Identities = 289/629 (46%), Positives = 361/629 (58%), Gaps = 76/629 (12%) Query 3 LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGS 62 +T+V A GM+R FN+AGVL +DVHVA RL AL GES E V LA A+AVRA+R+GS Sbjct 1 MTEVQVAQRGKGMLRVFNEAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGS 60 Query 63 VCVDLLSIARVA-------GHDDLPWPDPADWLAAVRASPLL----ADP----PVLHLYD 107 VC+DL + V D LPWPD + A+R SPL+ A P ++ D Sbjct 61 VCLDLTRLREVTVDEESEVDLDALPWPDDGIVVEALRRSPLVTGGSAGPLRPLRLVDTAD 120 Query 108 DRLLYLDRYWREEEQVCADLLALLTSRRPAGVPDLRRLFPTGF-------------DEQR 154 LLYLDRY+R+E + L P LR F D QR Sbjct 121 GGLLYLDRYFRQEATLRRVLDQRAVGHPPVDEQSLREGLDALFRDQHDDGASAPAPDRQR 180 Query 155 RAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARL 214 AA +A +Q +V+ GGPGTGKT TVAR+LAL+ Q P RIALAAPTGKAAARL Sbjct 181 IAAAVAATQWTSVVVGGPGTGKTHTVARVLALLTRQPG----PGLRIALAAPTGKAAARL 236 Query 215 AEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNVIVVDETS 272 E+VR + L DL A+TLHRLLG + G +RFR + N LP++ IVVDETS Sbjct 237 QESVREQSDALGLPP-----DLTAMTLHRLLGWQRGRGSRFRYNANNHLPYDAIVVDETS 291 Query 273 MVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVD----------------- 315 MVSLT+M RL EAVRP RL+LVGD DQL SV+AGAVLADLV Sbjct 292 MVSLTMMCRLLEAVRPDTRLVLVGDPDQLTSVDAGAVLADLVARPVTGTENPVLARIVGA 351 Query 316 GFSVRDDAL---------------VAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG 360 DD L V +L RFG I LA A+R G+ D V+ +L SG Sbjct 352 DLEAADDPLEAALSAGERDRLRGGVVRLSRGRRFGGGIAQLAVAVRKGEPDEVMKILSSG 411 Query 361 EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 + F ED LRA +V A + AA G + AL + HRLLCAHR+GP GV Sbjct 412 FPEVSFHSPED-LDALRADVVGTAAAVTAAAESGDAFAALRHSEGHRLLCAHREGPYGVQ 470 Query 421 HWNRRVQAWLAEETGQPPWTP--WYAGRPLLVTANDYGLRVYNGDTGVVLA-GPTGLRAV 477 W R+ W+ E GQ P WY G+PL+VTAND+ ++YNGDTGV++ L A Sbjct 471 RWTRQAMEWIGETIGQR-LNPDRWYPGQPLMVTANDHETKIYNGDTGVIVRRDDVELVAA 529 Query 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 + P + L V+T++AMTIH+SQGSQ D V+V++P E S LLTRELLYTA+TR Sbjct 530 FVRGNEPFLLHPTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGEASSLLTRELLYTAITR 589 Query 538 AKRKVRVVGSEASVRAAIARRAVRASGLR 566 A++ VR++GSE +VRA + RR +RASGLR Sbjct 590 ARKHVRIIGSEDAVRAGVQRRVLRASGLR 618 >gi|226360932|ref|YP_002778710.1| exodeoxyribonuclease V alpha chain [Rhodococcus opacus B4] gi|226239417|dbj|BAH49765.1| exodeoxyribonuclease V alpha chain [Rhodococcus opacus B4] Length=623 Score = 417 bits (1072), Expect = 3e-114, Method: Compositional matrix adjust. Identities = 292/635 (46%), Positives = 367/635 (58%), Gaps = 87/635 (13%) Query 3 LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGS 62 +T+V A GM+R FN+AGVL +DVHVA RL AL GES E V LA A+AVRA+R+GS Sbjct 1 MTEVQVAQRGKGMLRVFNEAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGS 60 Query 63 VCVDLLSIARVA-------GHDDLPWPDPADWLAAVRASPLLADPPV-----LHLYDDR- 109 VC+DL I V D LPWP+ + +AA+R SPL+ P L L D Sbjct 61 VCLDLTRIREVTVDEESEVDLDALPWPEDSTVVAALRRSPLVTGGPAGPLRPLRLVDTAE 120 Query 110 --LLYLDRYWREEEQVCADLLALLTSRRPAGVPDL-RRLFPTGFDE-------------- 152 LLYLDRY+R+E + L R G P + R G DE Sbjct 121 GGLLYLDRYFRQEATIRRVL-----DERAVGYPLVDERSLREGLDELFRDQHDHTAPAPS 175 Query 153 ---QRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGK 209 QR AA +A +Q +V+ GGPGTGKT TVARLLAL+ Q P RIALAAPTGK Sbjct 176 PDRQRIAAAVAATQWTSVVVGGPGTGKTHTVARLLALLTRQPG----PGRRIALAAPTGK 231 Query 210 AAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNVIV 267 AAARL E+VR + L +L+A+TLHRLLG + G ARFR + N LP++VIV Sbjct 232 AAARLQESVREQADALGLPP-----ELNAMTLHRLLGWQRGRGARFRFNANNHLPYDVIV 286 Query 268 VDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVD------------ 315 VDETSMVSLT+M RL AVRP RL+LVGD DQL SV+AGAVLADLV Sbjct 287 VDETSMVSLTMMCRLLAAVRPDTRLVLVGDPDQLTSVDAGAVLADLVARPVSGTENPVLG 346 Query 316 -----GFSVRDDALVAQLRTSHR---------------FGKVIGTLAEAIRAGDGDAVLG 355 DD L A L S R FG I LA A+R G+ + V+ Sbjct 347 RVVGADLDAADDPLEAALSASERDRLRGGVVRLSRGRRFGGGIAKLAVAVRDGEEELVID 406 Query 356 LLRSG-EERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRD 414 +LR G + F ED LRA +V A + ++A G + AL ++HRLLCAHR+ Sbjct 407 ILRGGGAPEVSFHGPED-LDALRADVVATAAAVTDSAESGDASAALQHSEKHRLLCAHRE 465 Query 415 GPTGVLHWNRRVQAWLAEETGQPPWTP--WYAGRPLLVTANDYGLRVYNGDTGVVLA-GP 471 GP GV W R+ W+ E TGQ P WY G+PL+VTAND+ ++YNGDTGV++ Sbjct 466 GPYGVQRWARQAMEWIGETTGQR-LDPDRWYPGQPLMVTANDHETKIYNGDTGVIVRRDD 524 Query 472 TGLRAVISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELL 531 L A + P + L V+T++AMTIH+SQGSQ D V+V++P S LLTRELL Sbjct 525 DELFAAFVRGTEPFLLHPTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGAASSLLTRELL 584 Query 532 YTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLR 566 YTA+TRA+ VR++G+E +VRA + RR +RASGLR Sbjct 585 YTAITRARNHVRIIGTEDAVRAGVQRRVLRASGLR 619 >gi|333920631|ref|YP_004494212.1| putative exodeoxyribonuclease V subunit alpha [Amycolicicoccus subflavus DQS3-9A1] gi|333482852|gb|AEF41412.1| putative exodeoxyribonuclease V alpha chain [Amycolicicoccus subflavus DQS3-9A1] Length=617 Score = 415 bits (1067), Expect = 1e-113, Method: Compositional matrix adjust. Identities = 282/625 (46%), Positives = 366/625 (59%), Gaps = 72/625 (11%) Query 6 VDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCV 65 V + A G++ FN+AG+L +DVHVAQRL L GES E V LA A+A RA+R GSVCV Sbjct 3 VSTVLNAQGLLHVFNEAGILAPADVHVAQRLQKLGGESSEIVLLAAALATRAVRLGSVCV 62 Query 66 DLLSIARVAGH-----DDLPWPDPADWLAAVRASPLL--ADPPVLHL-----YDDRLLYL 113 DL ++ V D LPWPD AD AA++ SPLL A+ P+ L + LLYL Sbjct 63 DLNRLSEVTVESEIDLDGLPWPDSADVGAALKRSPLLGSAEYPLQPLRLVATTEGELLYL 122 Query 114 DRYWREEEQVCADLLALLTSRRPAGVPDLRRLFPTGF-----------DEQRRAAEIALS 162 +RY+++E+ + L S + + F D QR AA +A + Sbjct 123 ERYYQQEQTIRRILDQRALSHPTVDAAQVTNILGGLFRTEEGVATAPPDRQRIAAALAAT 182 Query 163 QGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREM 222 TV+ GGPGTGKT TVAR+LA++ L GE R+ LAAPTGKAAARL E++ ++ Sbjct 183 HWTTVVAGGPGTGKTHTVARILAVLHA---LHGEGL-RVGLAAPTGKAAARLEESINQQA 238 Query 223 AKLDATDRARLGDLHAVTLHRLLGAKPGAR--FRQDRQNRLPHNVIVVDETSMVSLTLMA 280 A L L A+TLHRLLG +PG+R FR D NRLP++V+V+DETSMVSLT+M Sbjct 239 APLGLP-----AGLSAMTLHRLLGWRPGSRHRFRHDEYNRLPYDVVVLDETSMVSLTMMC 293 Query 281 RLAEAVRPGARLILVGDADQLASVEAGAVLADLV----------------------DGFS 318 RL EAVRP ARL+LVGD DQL SVEAGAVLADLV D Sbjct 294 RLLEAVRPDARLLLVGDPDQLTSVEAGAVLADLVARPASSGASPSPQLEPLIRADLDATD 353 Query 319 VRDDAL------------VAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEF 366 D+A V +L RFG I LA A+R G D VL +L + + + F Sbjct 354 DPDEAALSPFEKQRLHRGVIRLSRGRRFGGNISVLATAVRDGRADDVLEILHTSFDDVSF 413 Query 367 VDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRV 426 + LR +V + L A G AL TL+ HRLLCAHRDGP GV W ++ Sbjct 414 CPPGE-LTSLRHDIVAASAALTARATAGDVPGALKTLESHRLLCAHRDGPFGVRQWAQQA 472 Query 427 QAWLAEETGQ--PPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGP 484 W++ +TG+ P+ WY G+PLLVT ND+ +VYNGDTGVV+A G+ A P Sbjct 473 MDWISADTGERLDPFR-WYPGQPLLVTENDHDAKVYNGDTGVVVAHGEGVVAAFQRGENP 531 Query 485 LDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRV 544 + + +L V+T++AMTIH+SQGSQ D V+VL+P + S LLTRELLYTA+TRA+ VR+ Sbjct 532 ILLHPNQLAAVQTVYAMTIHRSQGSQYDTVSVLLPDDASALLTRELLYTAITRARHHVRI 591 Query 545 VGSEASVRAAIARRAVRASGLRMRL 569 +G++ SV A +AR+ RASGLR L Sbjct 592 IGTDVSVAAGVARQVQRASGLRRTL 616 >gi|284044827|ref|YP_003395167.1| exodeoxyribonuclease V, subunit alpha [Conexibacter woesei DSM 14684] gi|283949048|gb|ADB51792.1| exodeoxyribonuclease V, alpha subunit [Conexibacter woesei DSM 14684] Length=616 Score = 414 bits (1065), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 309/604 (52%), Positives = 373/604 (62%), Gaps = 41/604 (6%) Query 5 DVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVC 64 DV A A ++RAFN AGVL ++DV VA+RL AL +D + LA A+A RA R G V Sbjct 11 DVRLARGAPALLRAFNDAGVLSIADVQVARRLAALGDVADAELLLAFALAARAPRLGHVL 70 Query 65 VDLLSI-ARVA-------GHDDLPWPDPADWLAAVRASPLL-------ADPPVLHLYDDR 109 VDL +I A VA D LPWP+ W+AA+ L+ AD L L Sbjct 71 VDLATIRATVAVDTEERIDLDALPWPETGAWVAALAGCALVGVGDEDGADTTPLRLVGT- 129 Query 110 LLYLDRYWREEEQVCADLLALLTSRRPAGVPD------LRRLFPTGFDEQRRAAEIALSQ 163 LYLDRYWREE QV ADL L + PAGV + L+RL P QR A A + Sbjct 130 ALYLDRYWREERQVAADLRGRLEAL-PAGVDEAALTARLKRLAPDDA-RQRNAIAAAAVR 187 Query 164 GVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMA 223 + GGPGTGKTTTVA++ ALV EQA G P P IALAAPTGKAAARL E V A Sbjct 188 RFATVAGGPGTGKTTTVAQIAALVVEQARAEGRPVPLIALAAPTGKAAARLEEQVHHRAA 247 Query 224 KLDATD--RARLGDLHAVTLHRLLGAKPGA--RFRQDRQNRLPHNVIVVDETSMVSLTLM 279 +LD T R +L L A TLHRLLG +PG+ RFR DR RLPH++++VDE SMVSLTLM Sbjct 248 QLDTTPDVREQLAGLRASTLHRLLGWRPGSHSRFRHDRHARLPHDMVIVDEASMVSLTLM 307 Query 280 ARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIG 339 ARL EAVRP ARL+LVGD DQLAS+EAGAVL D+V + R A + QL +RFG IG Sbjct 308 ARLLEAVRPDARLVLVGDPDQLASIEAGAVLGDIVR--AARPGAGIVQLERVYRFGAGIG 365 Query 340 TLAEAIRAGDGDAVLGLLRSGEERIEFV--DDEDPAPRLRAVLVP---HALRL-RE---A 390 ++ A+RAGD DA++ L S + ++ D DPA AVL P A R RE A Sbjct 366 AVSAAVRAGDADALVAALVSAPAEVTWIPIDAGDPATATAAVLAPVRDAATRAGREVIAA 425 Query 391 ALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQP-PWTPWYAGRPLL 449 AL G AL L RLLCAHR GP GV W V+ WLA + W Y GRPLL Sbjct 426 ALGGDGRAALDALGAFRLLCAHRRGPHGVTTWMPLVEGWLAGDIAATGTWARDYPGRPLL 485 Query 450 VTANDYGLRVYNGDTGVVLAGPTG-LRAVISGASGPLDVATGRLGDVETMHAMTIHKSQG 508 +TANDY L ++NGDTGVV+A P+G L A + V RL V+T+HAMTIHKSQG Sbjct 486 ITANDYDLDLFNGDTGVVVASPSGGLTAAFERRGEIVAVRPARLRAVDTVHAMTIHKSQG 545 Query 509 SQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMR 568 SQ V++P DSR+LTRELLYTAVTRA+R + V+G+E ++RAA+ R A RASGL R Sbjct 546 SQFGTAAVVVPAADSRILTRELLYTAVTRARRHLIVIGTEDALRAAVHRPAARASGLSGR 605 Query 569 LQST 572 L ++ Sbjct 606 LGAS 609 >gi|297626184|ref|YP_003687947.1| exodeoxyribonuclease V subunit alpha [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921949|emb|CBL56509.1| Probable exodeoxyribonuclease V alpha chain RecD [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length=617 Score = 402 bits (1032), Expect = 1e-109, Method: Compositional matrix adjust. Identities = 282/613 (47%), Positives = 350/613 (58%), Gaps = 59/613 (9%) Query 10 VEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLS 69 V A+G++ F AGVL+ +DVHVA+ + GE+D VALAVA+ VRALRAGSVC+ L Sbjct 9 VSATGVLAQFAAAGVLEAADVHVAKMVTRTGGENDPSVALAVALTVRALRAGSVCLPL-D 67 Query 70 IARVAGH---------------DDLPWPDPADWLAAVRASPLLADP-------PVLHLYD 107 AR H D LPWPDP DWLA V SPL+ D P+ + Sbjct 68 QARPMAHFFVREDDDQAARTDIDALPWPDPLDWLATVVDSPLVGDEDATINSRPLRCV-- 125 Query 108 DRLLYLDRYWREEEQVCADLLALLTSRRPAG-----VPDLRRLFPTGFDE--QRRAAEIA 160 D +YL+RYW ++E + +LA PA L FP G E QRRA A Sbjct 126 DGAVYLERYWCDQESIRV-ILAHRAEPLPAVDESALTAALDEFFPGGDQEADQRRAVAAA 184 Query 161 LSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRR 220 + TV+ GGPGTGKT T++ ++ + Q GE RIALAAPTGKAAARL E++R Sbjct 185 VRGRTTVIAGGPGTGKTRTISWVVEAMRRQWMAQGE-TGRIALAAPTGKAAARLTESLRE 243 Query 221 EMAKLDATD---------RARLGDLHAVTLHRLLGAKPGARFRQDRQNRLPHNVIVVDET 271 A + A G LHAVTLHRLLGA+PG RLP++++VVDE Sbjct 244 NTAGPSSPAGTQGAGEDAMAVPGQLHAVTLHRLLGARPGRGVSFGPARRLPYDLVVVDEM 303 Query 272 SMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDAL---VAQL 328 SMVSL+LMARL EA+ P RL++VGDADQL V+AGAVLAD+ D L + +L Sbjct 304 SMVSLSLMARLLEALSPSTRLVMVGDADQLTPVDAGAVLADITAAGLAGPDPLGGGIVEL 363 Query 329 RTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPA-------PRLRAVLV 381 R RF I LA+A+R GD DA L LLR+ E ++F D+ DP P LR L Sbjct 364 RHGFRFDSAIAQLADAVRRGDADATLELLRASPEGLQF-DELDPGIVELDALPALRRELE 422 Query 382 PHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWL--AEETGQPPW 439 A + AA G + A+ L+ HRLLCAHR G GV W+ VQ A +G Sbjct 423 VQARGIGHAATSGDGNGAVRALEGHRLLCAHRTGVYGVSRWSAMVQQVQRPALASGSDAD 482 Query 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMH 499 W+ GRPLL T N L + NGDTGVV+A P G RA +S A L +ETM Sbjct 483 PDWFTGRPLLATRNMAELGISNGDTGVVIATPEGPRAAMSNGR---SYAPFVLEGIETMF 539 Query 500 AMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRA 559 AMTIHKSQGSQ D VTV++P DS LLTRELLYTA+TRA+R VR++G ++ A+ A Sbjct 540 AMTIHKSQGSQFDRVTVVLPGADSPLLTRELLYTAITRARRGVRIIGLREAIVTAVRTPA 599 Query 560 VRASGLRMRLQST 572 RASGL RLQ T Sbjct 600 RRASGLTDRLQRT 612 >gi|258654032|ref|YP_003203188.1| exodeoxyribonuclease V subunit alpha [Nakamurella multipartita DSM 44233] gi|258557257|gb|ACV80199.1| exodeoxyribonuclease V, alpha subunit [Nakamurella multipartita DSM 44233] Length=632 Score = 399 bits (1025), Expect = 7e-109, Method: Compositional matrix adjust. Identities = 320/630 (51%), Positives = 381/630 (61%), Gaps = 81/630 (12%) Query 5 DVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVC 64 D A+ ASG++RA N A VL +DVHVA R+ LAGE D+RV LAVA+AVR +R+GSVC Sbjct 16 DRRLALGASGLLRAANVADVLSAADVHVATRIAQLAGEPDDRVRLAVAMAVRGIRSGSVC 75 Query 65 VDL------LSIARVAGHDDLPWPDPADWLAAVRASPLL-ADPPVLHLYDDRLLYLDRYW 117 +DL L +A G WP DW AVRAS L+ A P+ +D LLYLDRY Sbjct 76 IDLAQARATLLLADPGGD----WPVLPDWRDAVRASLLVGAGRPLQWEFD--LLYLDRYR 129 Query 118 REEEQVCADLLALLTSRR--PAGVPD-------LRRLFPTGFDEQRRAAEIALSQGVTVL 168 +E+QV DL RR P V D L RLF G QR AAE+A + TV+ Sbjct 130 TQEQQVRDDL----RDRRAQPPPVVDRVALADGLDRLFAGGDPGQRHAAELAATGWTTVI 185 Query 169 TGGPGTGKTTTVARLLALVAEQAELAGEP--RPRIALAAPTGKAAARLAEAVRREMAKLD 226 GGPGTGKTTTVAR+LAL L G+P RPR+A+AAPTGKAAARL AV+ + L Sbjct 186 GGGPGTGKTTTVARVLAL------LMGQPGARPRVAMAAPTGKAAARLQAAVQAQAVALS 239 Query 227 ATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAE 284 DR L L A TLHRLLG PG RFR DR NRLP +V+VVDETSMVSLT+MARL E Sbjct 240 PADRHDLPTLTASTLHRLLGWLPGRSQRFRHDRDNRLPFDVVVVDETSMVSLTMMARLLE 299 Query 285 AVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDA--------------------- 323 AVRP ARLILVGD DQLASVEAGAVLADLV G + A Sbjct 300 AVRPDARLILVGDPDQLASVEAGAVLADLVAGLTAVPAAPPATGSATGSATESAAGSAAG 359 Query 324 -----------------LVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEF 366 VA L + RFG I LA A+RAGD DA L +L + Sbjct 360 PGAVPPGPPAIAPARADAVALLDRTWRFGGDIAELAAAVRAGDADAALAVLARPGADVAL 419 Query 367 VDDEDPAPRL-------RAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGV 419 + ED A R +V A +R AA G + AL LD HR+LCAHR GP GV Sbjct 420 IAPEDTAGAGAAVDAAVRPDVVGTAAAVRAAADAGEAQEALRRLDGHRVLCAHRSGPRGV 479 Query 420 LHWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVIS 479 W R++ WLA E PP WY GRP+LVTANDY LR++NGD GV + LR S Sbjct 480 TQWTYRIENWLAAEDLLPPHRLWYPGRPVLVTANDYTLRLFNGDVGVAVLTGGQLRVSFS 539 Query 480 GASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAK 539 +D A GRL DV+T+HAMT+H+SQGSQ D VTV++P+ DS L TRELLYTA+TRA+ Sbjct 540 QHGRIVDYAPGRLADVQTVHAMTVHRSQGSQFDRVTVVLPEADSPLCTRELLYTALTRAQ 599 Query 540 RKVRVVGSEASVRAAIARRAVRASGLRMRL 569 +VR++G+EA VRAA+AR A RASGLR+R+ Sbjct 600 TRVRLIGTEAEVRAAVARPAARASGLRLRM 629 >gi|54024516|ref|YP_118758.1| putative RecD protein [Nocardia farcinica IFM 10152] gi|54016024|dbj|BAD57394.1| putative RecD protein [Nocardia farcinica IFM 10152] Length=628 Score = 394 bits (1012), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 289/634 (46%), Positives = 367/634 (58%), Gaps = 83/634 (13%) Query 3 LTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGS 62 +T + A +G++R FN+AGVL +DVHVA RL L E E V A A+AVRA+R+GS Sbjct 1 MTSIQLAQRGTGLLRTFNEAGVLSAADVHVAVRLGRLGREESELVLFAAALAVRAVRSGS 60 Query 63 VCVDLLSIARVAGHDD-------------LPWPDPADWLAAVRASPLLADPPVLHLY--- 106 VC++L + + D LPWPD +AA+R SPL+ P L Sbjct 61 VCLELHRMREIGVDADESWDAGTGIDPASLPWPDVEAVIAALRVSPLVCGGPAGPLCPLR 120 Query 107 -----DDRLLYLDRYWREEEQVCADLLALLTSRRPAGVP---------DLRRLFPTGFD- 151 D LLYLDRY+R+E+ + L + R A P +L RLF D Sbjct 121 VVPGDDGPLLYLDRYFRQEQTIRRVL-----TERAASHPRVNAAIVRRELDRLFGADHDG 175 Query 152 ---EQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALV-AEQAELAGEPRPRIALAAPT 207 QR AA +A + TV+ GGPGTGKT T+AR+LAL+ A + P RIALAAPT Sbjct 176 APDRQRLAAALAATHWTTVVAGGPGTGKTHTIARILALLDAHRRADPKAPPLRIALAAPT 235 Query 208 GKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNV 265 GKAAARL EAVR + +L L +L A TLHRLLG + G RFR + NRLP++V Sbjct 236 GKAAARLQEAVREQAGELG------LPELSAATLHRLLGWQRGRRTRFRHNEFNRLPYDV 289 Query 266 IVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDG--------- 316 IVVDETSMVSLT+M+ L A+RP RL+LVGD DQLASV+AGAVLADLV G Sbjct 290 IVVDETSMVSLTMMSSLLAALRPDTRLVLVGDPDQLASVDAGAVLADLVAGPVLGTPNPE 349 Query 317 -----------FSVRDDALVAQLRT-----------SHRFGKVIGTLAEAIRAGDGDAVL 354 + + L A RT RFG I LA A+RAGD D L Sbjct 350 LDRILGGPPPDLAAHPEGLTALERTRLRSGIVRLTRGRRFGGRIAELAVAVRAGDADRAL 409 Query 355 GLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRD 414 LL +G + + +D A +RA +V A + AA G + AL L+ HRLLCAHR Sbjct 410 HLLHTGGDDLSLCAPDDVA-TVRADVVRAARTVTAAAQAGDATGALTALESHRLLCAHRQ 468 Query 415 GPTGVLHWNRRVQAWLAEETGQP--PWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPT 472 GP GV W+R W A P + WY G+PLLVTAND+ R+YNGDTGV++A P Sbjct 469 GPFGVERWDRLAGEWAAAAGAGPDSAQSSWYPGQPLLVTANDHEARIYNGDTGVIVAMPD 528 Query 473 G-LRAVISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELL 531 G LRA + S P V + V T+ AMTIH+SQGSQ D V++++P+ +S LLTRELL Sbjct 529 GSLRAALQRGSEPYLVHPTQFPAVVTVFAMTIHRSQGSQYDTVSIVLPEPESTLLTRELL 588 Query 532 YTAVTRAKRKVRVVGSEASVRAAIARRAVRASGL 565 YTA+TRA+ VRV+G+E S+RAA+ RR +RASGL Sbjct 589 YTAITRARGHVRVIGTEESIRAAVGRRVLRASGL 622 >gi|336321366|ref|YP_004601334.1| exodeoxyribonuclease V subunit alpha [Cellvibrio gilvus ATCC 13127] gi|336104947|gb|AEI12766.1| exodeoxyribonuclease V, alpha subunit [Cellvibrio gilvus ATCC 13127] Length=636 Score = 386 bits (991), Expect = 6e-105, Method: Compositional matrix adjust. Identities = 306/607 (51%), Positives = 369/607 (61%), Gaps = 61/607 (10%) Query 7 DFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVD 66 D G++ F A VL +DVHVA+R+ AL GE+DE V LA A+AVRALRAGSVCV Sbjct 34 DVPWHTEGLLAPFVAARVLTSADVHVARRVTALCGEADESVQLAAALAVRALRAGSVCVV 93 Query 67 LLSIARV--------AGHDDLP-----------------WPDPADWLAAVRASPLLAD-- 99 L +A AG D LP WP+ W AVRASP +AD Sbjct 94 LADVAATVVEPTDDDAGSDPLPAPFPGTPGVAPEPDGLPWPETGAWTGAVRASPAVADGA 153 Query 100 --PPVLHL-YDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVPDLR------RLFPTGF 150 PP L + D LYLDRYW +E +V + A L P V + R RLFP Sbjct 154 DGPPDRPLRWTDGRLYLDRYWCDEVEVAEHVAARL---EPVAVDEQRLTAAVQRLFPDAA 210 Query 151 DEQRRAA-EIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGK 209 D+++RAA A + +TVLTGGPGTGKTTTVARL VA ++AG P R+ALAAPTGK Sbjct 211 DDRQRAALRTAATSRLTVLTGGPGTGKTTTVARL---VAALQDVAG-PGLRVALAAPTGK 266 Query 210 AAARLAEAVRREMA--KLDATDRARLGDLHAVTLHRLLGAKPGA--RFRQDRQNRLPHNV 265 AAARL E+V E+ LDA DRA G+L A T+HRLLG +PG+ RF D ++RLPH+V Sbjct 267 AAARLQESVTAELQALPLDA-DRAAAGELRASTVHRLLGHRPGSSTRFGHDARHRLPHDV 325 Query 266 IVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALV 325 +VVDE SM+SL LMARL EAVRP AR++LVGDA QLASVEAGAVL DLV V Sbjct 326 VVVDECSMMSLPLMARLLEAVRPQARVVLVGDAHQLASVEAGAVLGDLVASLPHG----V 381 Query 326 AQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPR------LRAV 379 +L HRFG + LA AIR GD D + LL +G +E+V AP L A Sbjct 382 VELTREHRFGAELAALAHAIREGDADRTVALLTAGGAAVEWVPTAGDAPTAREAAGLEAD 441 Query 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 + L AA GA D AL L EHRLL AHR GP GV HW V+ W+A+ETG Sbjct 442 VRATGAALVAAARAGAVDDALHALGEHRLLLAHRHGPAGVAHWTDVVEEWVAQETGGRSA 501 Query 440 TPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLD-VATGRLGDVETM 498 P+ GRPL+VT ND +YNGDTGVV+ P G+ AV GA G VA RL ++ Sbjct 502 APYPPGRPLIVTRNDRSTGLYNGDTGVVVETPDGV-AVAFGAPGAHRLVAPYRLPPARSV 560 Query 499 HAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARR 558 HAMT+H+ QGSQ V+V++P S LLTRELLYTAVTRA+ +RV+GSEA+VRAA+ R Sbjct 561 HAMTVHRGQGSQFTRVSVVLPPAASPLLTRELLYTAVTRARTHLRVIGSEAAVRAAVQRP 620 Query 559 AVRASGL 565 RASGL Sbjct 621 VQRASGL 627 >gi|152964962|ref|YP_001360746.1| exodeoxyribonuclease V subunit alpha [Kineococcus radiotolerans SRS30216] gi|151359479|gb|ABS02482.1| exodeoxyribonuclease V, alpha subunit [Kineococcus radiotolerans SRS30216] Length=634 Score = 385 bits (988), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 298/604 (50%), Positives = 365/604 (61%), Gaps = 50/604 (8%) Query 12 ASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIA 71 ASG++R FN G+L +DVHVA+RL A+ GE DERV LAVA+AVRA+R GSV + L + Sbjct 35 ASGLLREFNDLGLLHAADVHVARRLGAVTGEDDERVLLAVALAVRAVRHGSVVLHLRQVP 94 Query 72 RVAGHDDLP-----------WPDPADWLAAVRASPLLAD---------PPVLHLYDDRLL 111 +D+ WPDP +WLAA+R SPLL + LHL D L Sbjct 95 ETVVPEDVEDSGAVGTVAVRWPDPEEWLAALRRSPLLVEHAPGETTGPAAPLHLVGDGL- 153 Query 112 YLDRYWREEEQVCADL---LALLTSRRPAGVPD-LRRLFPTGF-DEQRRAAEIALSQGVT 166 +LDRYWR+E V DL A + PA V L RL+P G D+QR AA + L+ GV+ Sbjct 154 WLDRYWRQELAVAEDLRARSAAVAGYDPAAVDAVLDRLWPGGLADDQRTAAAVCLAHGVS 213 Query 167 VLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLD 226 VL GGPGTGKTTTVARLLA V L+ P PR+ALAAPTGKAAARL EAV Sbjct 214 VLGGGPGTGKTTTVARLLAAVHA---LSPGP-PRVALAAPTGKAAARLTEAVVSAAGTDG 269 Query 227 ATDRAR--LGDLHAVTLHRLLGAKPGA-RFRQDRQNRLPHNVIVVDETSMVSLTLMARLA 283 TD R L A TLHRLLG +PG+ R R D ++RLPH+V++VDE SMV L +MARL Sbjct 270 FTDDERRFLRSTTASTLHRLLGIRPGSVRARYDAEHRLPHDVVIVDEASMVGLGVMARLL 329 Query 284 EAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDAL-------VAQLRTSHRFGK 336 A+RPGARL+LVGD QLASVE GAVLADLV VA LR +HRF Sbjct 330 AALRPGARLVLVGDPQQLASVEVGAVLADLVAPAERAAPGAAPAVPHGVALLRRTHRFAD 389 Query 337 VIGTLAEAIRAGDG--DAVLGLLRSGEERIEFVDDEDPA-------PRLRAVLVPHALRL 387 G A A G + V+ LLR+G +EF++ D +RA ++ + + Sbjct 390 RGGIAAIAAAVRRGAAEEVVDLLRAGGPDVEFLEVPDEELVAGAALEAVRAEVLRRSAAV 449 Query 388 REAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETG-QPPWTPWYAGR 446 EAA G + AL LD HR LCAHR G GV HW+ Q W E+ G QP Y G Sbjct 450 VEAARAGDAAAALTALDAHRTLCAHRRGTRGVSHWSALAQRWAVEDLGVQPRTDGRYVGL 509 Query 447 PLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETMHAMTIHKS 506 P++VTAND G+ V+NGDTGVVL L A I+ +GPL V RL VE +HAMT+H+S Sbjct 510 PVIVTANDPGVGVFNGDTGVVLDRDGTLVAAIARGAGPLLVPLARLAAVEPVHAMTVHRS 569 Query 507 QGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLR 566 QGSQ D VTVL E S L TRE+ YTA+TRAK +VRVVGS +V AA++R RA+GL Sbjct 570 QGSQFDVVTVLAAPERSPLATREMFYTALTRAKVRVRVVGSPEAVAAAVSRPLARATGLA 629 Query 567 MRLQ 570 RL+ Sbjct 630 ERLR 633 >gi|296139997|ref|YP_003647240.1| exodeoxyribonuclease V subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296028131|gb|ADG78901.1| exodeoxyribonuclease V, alpha subunit [Tsukamurella paurometabola DSM 20162] Length=598 Score = 384 bits (986), Expect = 3e-104, Method: Compositional matrix adjust. Identities = 289/613 (48%), Positives = 370/613 (61%), Gaps = 77/613 (12%) Query 13 SGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIAR 72 S +++ F +AGVL +DVHVA L L GESDE V LA A+A RA+R GSVC++L + Sbjct 2 SALLQTFAEAGVLGPADVHVASTLGRLGGESDETVLLAAALATRAVRLGSVCLELSRLRD 61 Query 73 VAGHDD-------LPWPDPADWLAAVRASPLL----ADPPV-LHLYDDRLLYLDRYWREE 120 VA D LPWP+ LAA+R SPL+ A P L L D LLYLDRY R+E Sbjct 62 VAVDGDDAVDLEALPWPESGVVLAALRRSPLVVGSGAGPLTPLRLVDGELLYLDRYHRQE 121 Query 121 EQVCADLLALLTSRRPAGVP--DLRRL-------FP-TGFDEQRRAAEIALSQGVTVLTG 170 E V A L A R VP D+ RL FP G D QR AA ++ TVL G Sbjct 122 ETVRAVLDA-----RADAVPGVDVERLRVGLRARFPDPGPDRQRLAAAASVLGRTTVLAG 176 Query 171 GPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDR 230 GPGTGKT TVAR+LAL+ +Q P R+ LAAPTG+AAA+LA VR++ L Sbjct 177 GPGTGKTYTVARILALLFDQHG----PGLRVGLAAPTGRAAAQLAGEVRKQGEALGLPRH 232 Query 231 ARLGDLHAVTLHRLLGAKPGA--RFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRP 288 + A T+HR+LG KPG+ RFR D N LP++V+VVDETSMVSLT+M RL EA+RP Sbjct 233 -----IPAQTIHRMLGFKPGSASRFRHDALNHLPYDVVVVDETSMVSLTIMCRLLEALRP 287 Query 289 GARLILVGDADQLASVEAGAVLADLVDGFSVR--------------------DDAL---- 324 ARLILVGD DQLASV+AGAVL DLV R +DAL Sbjct 288 DARLILVGDPDQLASVDAGAVLGDLVHRGVTRAPAPAVEEFLADEAARTGGDEDALDEGE 347 Query 325 -------VAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEE-RIEFVDDEDPAPRL 376 V +LR RF +G LA+A+R GD D V+ L R+G + IE+ + +D A L Sbjct 348 LAEARRGVVRLRRGRRFSGALGELADAVRRGDADRVIELARAGGDGAIEWCEPDDLAG-L 406 Query 377 RAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQ 436 RA + + AA +G + A + + HR+LCAH +GP+GV W + + W + Sbjct 407 RADVEAASAATGAAARVGRAVEAASAVQLHRVLCAHSEGPSGVTRWAQLAEEWSGV---R 463 Query 437 PPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLA---GPTGLRAVISGASGPLDVATGRLG 493 P + WYAG+PLLVTANDY +VYNGD GVV+A P LRA S + +L Sbjct 464 PGGSGWYAGQPLLVTANDYDTKVYNGDVGVVIAHGGDPADLRAAFSRGGELALLYPNQLV 523 Query 494 DVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRA 553 V T++AMTIH+SQGSQ + V+V++P DSRLLTRELLYTA+TRA+++VR+VGSE ++RA Sbjct 524 AVRTVYAMTIHRSQGSQYEAVSVVIPPADSRLLTRELLYTAITRARQRVRLVGSEEALRA 583 Query 554 AIARRAVRASGLR 566 + R+ +RASGLR Sbjct 584 GVQRQVLRASGLR 596 >gi|326384945|ref|ZP_08206619.1| exodeoxyribonuclease V subunit alpha [Gordonia neofelifaecis NRRL B-59395] gi|326196335|gb|EGD53535.1| exodeoxyribonuclease V subunit alpha [Gordonia neofelifaecis NRRL B-59395] Length=627 Score = 371 bits (953), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 275/611 (46%), Positives = 352/611 (58%), Gaps = 73/611 (11%) Query 18 AFNQAGVLDVSDVHVAQRLCALAGES-DERVALAVAVAVRALRAGSVCVDLLSIARVA-- 74 AFN AGVL +DVHVA+R+ AL+G D+ V L A+AVRA+R GS CV+L I +A Sbjct 20 AFNAAGVLSAADVHVARRVAALSGAPVDDDVLLGAALAVRAVRTGSTCVELDRIEELAPP 79 Query 75 ---GHDDLPWPDPADWLAAVRASPLLADPPV-----LHLYDDR---LLYLDRYWREEEQV 123 G + L WP P A+ ASPL+ P L L D LLYL +++R+E+ + Sbjct 80 TPDGAEPLSWPRPGALREALTASPLVVGAPSGPLRPLALADSDEGPLLYLRKFFRQEQSI 139 Query 124 CADLLALLTSRRPAGVPD-----LRRLF----PTGFDEQRRAAEIALSQGVTVLTGGPGT 174 +L + RP P L F G+D QR AA +A + TVL GGPGT Sbjct 140 -RRILDERAASRPEVDPAVLSAALDIAFGDGDAGGYDRQRAAAALAATSWTTVLAGGPGT 198 Query 175 GKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAV---RREMAKLDATDRA 231 GKT TVAR+LA++ + G+ R I L APTG+AAA+L A+ RRE L + Sbjct 199 GKTYTVARILAVM--ETLFGGDLR--IGLCAPTGRAAAQLQSAIGEYRREHQTLRS---- 250 Query 232 RLGDLHAVTLHRLLGAKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGAR 291 D AVT+HRLLG++P F + NRLP +V+VVDETSM+ +T+M RL E++R R Sbjct 251 ---DPVAVTVHRLLGSRPDGTFLRGSGNRLPFDVVVVDETSMLPVTMMCRLLESLRADTR 307 Query 292 LILVGDADQLASVEAGAVLADLVDGFSVRD------DALVAQ------------------ 327 LILVGD QL SVEAGAVLADLVD S DA VA Sbjct 308 LILVGDPHQLVSVEAGAVLADLVDRDSTSHVQAELPDAFVATTSLDSADFDPAEESSLGR 367 Query 328 ----LRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSG---EERIEFVD-DEDPAPRLRAV 379 LR HR+G IG +AEA+ AGD D VL L+ +G + + + D D + R AV Sbjct 368 GVITLRRGHRYGDRIGEVAEAVNAGDADRVLELIGAGAGSDHPVRLIPPDADDSVRREAV 427 Query 380 LVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPW 439 A LREAA G + A+ L HR+LCAHRDG GV W+RRV W+A++ G Sbjct 428 --EWARSLREAAHAGDAHAAVVALRGHRVLCAHRDGAYGVAGWSRRVVGWIADDLGGGLG 485 Query 440 TP-WYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVISGASGPLDVATGRLGDVETM 498 WY G PLLVTAND VYNGD+GVV+A G+ AV + +L D + Sbjct 486 ADRWYPGEPLLVTANDRAQGVYNGDSGVVIADGQGVAAVFERGHEIKRLHPSQLADAVPV 545 Query 499 HAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARR 558 +AMTIH+SQGSQ VTV++P D+ LLTRELLYTA+TRA+R+V +VG+ S+RAA+ RR Sbjct 546 YAMTIHRSQGSQFGTVTVVLPPPDAELLTRELLYTAITRAEREVTIVGTPESLRAAVGRR 605 Query 559 AVRASGLRMRL 569 RASGLR L Sbjct 606 VARASGLRTDL 616 >gi|332671044|ref|YP_004454052.1| exodeoxyribonuclease V subunit alpha [Cellulomonas fimi ATCC 484] gi|332340082|gb|AEE46665.1| exodeoxyribonuclease V, alpha subunit [Cellulomonas fimi ATCC 484] Length=644 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 307/642 (48%), Positives = 371/642 (58%), Gaps = 86/642 (13%) Query 4 TDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSV 63 TD G++ F +AG L +DVHVA+RL A+A E+DERV LAVA+AV A+RAGSV Sbjct 13 TDPRVPWRVDGLLAPFVRAGALASADVHVARRLGAIAHETDERVHLAVALAVAAVRAGSV 72 Query 64 CVDLLSI-----ARVAGHD-----DLPWP---DPADWLAAVRASPLLADPPVLHLYDDRL 110 CV+L A + G D DLPWP P W+AAVR SPL+ D L DDR Sbjct 73 CVELADAPGAVAALLDGADPPRAADLPWPALDGPDGWVAAVRRSPLVGD--GLDGADDRP 130 Query 111 L-------YLDRYWREEEQVCADLLALL----------------------------TSRR 135 + YLDRYWR+E V ++ A L ++ Sbjct 131 VRWVDGRVYLDRYWRDELSVRREVEARLARGAPAAPGAADDQADIDAAGGDGPVDGSNCS 190 Query 136 PAGVPDL-RRLFPTGFDE-QRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAEL 193 + D+ RRLFP D+ QR A A + +TVLTGGPGTGKTTTVARL+A + A Sbjct 191 DGAIDDVARRLFPAATDDRQREALRTASTSLLTVLTGGPGTGKTTTVARLVAALQATAG- 249 Query 194 AGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPGA-- 251 P R+ALAAPTGKAA+RL E+V ++A LD DRAR+G L A TLHRLLG +PG+ Sbjct 250 ---PGLRVALAAPTGKAASRLQESVNAQVATLDEDDRARVGTLTATTLHRLLGPRPGSTT 306 Query 252 RFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLA 311 RFR DR RLPH+V+VVDE+SMVSL LMARL EA+RP ARL+LVGD DQLASVEAGAVL Sbjct 307 RFRHDRDRRLPHDVVVVDESSMVSLPLMARLVEALRPDARLVLVGDPDQLASVEAGAVLG 366 Query 312 DLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDED 371 DLV R V +L +HRFG + LA A+RAGD DA L LLR+G + E Sbjct 367 DLVASLHGR---AVVRLTQTHRFGDDLAALAAAVRAGDADATLALLRTGGAHVRLTATEV 423 Query 372 PAPR------LRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNRR 425 AP LR +V L AA G + ALA L +HRLL AHR+GP GV W + Sbjct 424 DAPAPDDLVGLRHDVVTAGRALVAAARAGDAAAALAALGQHRLLLAHREGPAGVARWAAQ 483 Query 426 VQAWLAEET-GQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVV---LAGPTGLRAVISGA 481 +AW+ T + PW G PLLVT ND + NGDTGVV L G TG R + Sbjct 484 AEAWVEAATDARDSREPWPLGLPLLVTENDPSSGLSNGDTGVVVRDLVG-TGTRGPAAHG 542 Query 482 SGPLDVATGRLGD--------------VETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLT 527 P D GD V+ +HAMT+H+ QGSQ VTVL+P S LLT Sbjct 543 PAPGDAVVVAFGDPDRPHLVRPHRLPAVQPVHAMTVHRGQGSQFTRVTVLLPPATSPLLT 602 Query 528 RELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRL 569 RELLYTAVTRA+ V V+GS +VRAA+ R RASGLR L Sbjct 603 RELLYTAVTRARESVHVIGSPDAVRAAVERPVRRASGLRHPL 644 >gi|296130269|ref|YP_003637519.1| exodeoxyribonuclease V, alpha subunit [Cellulomonas flavigena DSM 20109] gi|296022084|gb|ADG75320.1| exodeoxyribonuclease V, alpha subunit [Cellulomonas flavigena DSM 20109] Length=647 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 296/627 (48%), Positives = 354/627 (57%), Gaps = 79/627 (12%) Query 12 ASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL--- 68 A ++ F AGVL +DV VA+RL L GE D V LA A+AVRA+RAGSVCVDL Sbjct 27 AGPLLTTFADAGVLTSADVRVAERLGDLTGEDDPTVHLAAALAVRAVRAGSVCVDLADAP 86 Query 69 SIARVAGHDD---------LPWPDPADWLAAVRASPLLADP-------PVLHLYDDRLLY 112 S+ DD LPWPD A W AAVR S ++AD PV + D +Y Sbjct 87 SLVAEGSPDDPDAPLPAGTLPWPDTAAWTAAVRGSGMVADGVDGPADRPVR--WVDGRVY 144 Query 113 LDRYWREEEQVCADLLALLTSRRPAGVPDLRRL----FPTGFD-EQRRAAEIALSQGVTV 167 LDRYWR+E+ V D+ A LTS LRR FP D QR AA A +TV Sbjct 145 LDRYWRDEQVVRRDVDARLTSLLDVDDDALRRAVHARFPRAQDARQRVAAATAAVSRLTV 204 Query 168 LTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLD- 226 LTGGPGTGKTTTVARL+A++ + A P RIALAAPTGKAA RL EAV E+A+LD Sbjct 205 LTGGPGTGKTTTVARLVAVLRDVAG----PGLRIALAAPTGKAATRLQEAVNAELARLDD 260 Query 227 --------ATDRARLGDLHAVTLHRLLGAKPGA-RFRQDRQNRLPHNVIVVDETSMVSLT 277 A AR L A T+HRLLG +P + RF D +RLPH+V+V+DE SMVSL Sbjct 261 AAVGGTVAAPGAAR--PLTASTIHRLLGWRPSSTRFAHDHAHRLPHDVVVLDEASMVSLP 318 Query 278 LMARLAEAVRPGARLILVGDADQLASVEAGAVLADLV----------------------- 314 L+AR+ +A+RP ARL+LVGD DQLASVE GAVL DLV Sbjct 319 LLARVLDALRPDARLVLVGDPDQLASVEVGAVLGDLVARPTRSGPLPARLAALLPDDVPG 378 Query 315 ---DGFSVRDDAL----VAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERIEFV 367 RD A V +L +HRFG + LA+A+R GD DA L LLR+G V Sbjct 379 TATSADDTRDAAALHGGVVRLVVTHRFGHELAELADAVRRGDADATLALLRAGGAHASLV 438 Query 368 D------DEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLH 421 + ED P LR + RL AA G + AL L HRLL AHR GP GV Sbjct 439 EPAAEVPTEDEVPGLRGDVSATGARLVAAARAGDTAGALEALGVHRLLLAHRRGPAGVAR 498 Query 422 WNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLA-GPTGLRAVISG 480 W Q W+ + G P GRPLLVT ND + NGD GV+++ G G+ A Sbjct 499 WAALAQRWVEKTVGDLQPGPLSLGRPLLVTVNDRTTGLSNGDIGVLVSDGAGGVVAAFGE 558 Query 481 ASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKR 540 + P V RL VET+HAMT+H++QGSQ VTVL+P S LLTRELLYTAVTRA+ Sbjct 559 SHAPRLVRPHRLPAVETVHAMTVHRAQGSQFTFVTVLLPPASSPLLTRELLYTAVTRAQE 618 Query 541 KVRVVGSEASVRAAIARRAVRASGLRM 567 VRVVGS +VR A+ R RASGLR Sbjct 619 HVRVVGSAEAVRRAVERPVRRASGLRF 645 >gi|331697796|ref|YP_004334035.1| exodeoxyribonuclease V subunit alpha [Pseudonocardia dioxanivorans CB1190] gi|326952485|gb|AEA26182.1| exodeoxyribonuclease V, alpha subunit [Pseudonocardia dioxanivorans CB1190] Length=721 Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 248/451 (55%), Positives = 290/451 (65%), Gaps = 36/451 (7%) Query 151 DEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEPRPRIALAAPTGKA 210 D QR AA +A + VTV+ GGPGTGKTTTVARLLAL+ +Q P PR+ALAAPTGKA Sbjct 273 DRQRLAAAVATLRRVTVVAGGPGTGKTTTVARLLALLRDQPG----PPPRVALAAPTGKA 328 Query 211 AARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGAKPG--ARFRQDRQNRLPHNVIVV 268 AARLAEAVR ++ +L DRARLGDL A TLHRLLG +PG RF DR NRLPH+V+VV Sbjct 329 AARLAEAVREQVRRLPGPDRARLGDLPASTLHRLLGFRPGHTNRFHHDRTNRLPHDVVVV 388 Query 269 DETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLVDGFSVRDDALVAQL 328 DETSMVSLT+MARL EAVRP ARL+LVGD DQLASVEAGAVL DL + AL A L Sbjct 389 DETSMVSLTMMARLLEAVRPDARLVLVGDPDQLASVEAGAVLGDLARAPGPVEPALDATL 448 Query 329 RT--------------------SHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEE-RIEFV 367 R + RFG I LA A+R GDGD + LRSG +EFV Sbjct 449 RELGVLGRADPAVVHGVVTLDRTWRFGAEIAALARAVRDGDGDGAIEALRSGAGGAVEFV 508 Query 368 D-------DEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVL 420 + D +RA +V L A G D AL LD HRLLCAHR GP GV Sbjct 509 EAPTLELRDPPGLDAVRAEVVAANRTLVAHARAGDVDGALRALDRHRLLCAHRRGPYGVT 568 Query 421 HWNRRVQAWLAEET--GQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVI 478 W V+ WL + P W+ GR +LVT NDY L +YNGDTGV++ RAV Sbjct 569 RWGWEVERWLTDAGVGPGPDDGEWFPGRAVLVTTNDYDLNLYNGDTGVLVREEGRTRAVF 628 Query 479 SGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRA 538 PL VAT RL +++HAMT+H++QGSQ +VTV++P +S LLTRELLYTAVTRA Sbjct 629 GRGGAPLRVATARLSQPQSVHAMTVHRAQGSQFSQVTVVLPAPESPLLTRELLYTAVTRA 688 Query 539 KRKVRVVGSEASVRAAIARRAVRASGLRMRL 569 +VRVVGSEA+VRAA+AR RASGLR RL Sbjct 689 IERVRVVGSEAAVRAAVARPVGRASGLRDRL 719 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/144 (51%), Positives = 86/144 (60%), Gaps = 12/144 (8%) Query 5 DVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVC 64 D +A A G++ FN AGVL +DVHVA RL L GE+DE V LA A+ VRALR GSVC Sbjct 45 DPRYARGAGGLLARFNAAGVLAAADVHVAARLGRLGGETDETVLLAAALTVRALRHGSVC 104 Query 65 VDLLSIA-RVAGHDD-------LPWPDPADWLAAVRASPLLADPPVLHLYDDR----LLY 112 VDL + V G D LPWPDPA W AA ASPL++ P + R LLY Sbjct 105 VDLDEVGTTVLGEGDEVLDVSALPWPDPAAWRAACLASPLVSAEPTGGVAPLRMPHGLLY 164 Query 113 LDRYWREEEQVCADLLALLTSRRP 136 LDRYWR+EEQV +L A + P Sbjct 165 LDRYWRQEEQVRVELRARAAAEPP 188 >gi|222054487|ref|YP_002536849.1| exodeoxyribonuclease V, alpha subunit [Geobacter sp. FRC-32] gi|221563776|gb|ACM19748.1| exodeoxyribonuclease V, alpha subunit [Geobacter sp. FRC-32] Length=609 Score = 332 bits (852), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 245/599 (41%), Positives = 334/599 (56%), Gaps = 61/599 (10%) Query 22 AGVLDVSDV--HVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDL 79 A ++ SD+ H A +C LA D+ + LA A+A +A+ G+VC+DL + + A ++ Sbjct 11 AEIMPFSDMDRHFAAFMCRLASSDDKELWLAAALASQAVSNGNVCLDLTDVCQSAAGYEI 70 Query 80 PWPDPADWLAAVRASPLLADP----PVLHLYDDRLLYLDRYWREEEQVCADLLALLTSR- 134 DPA W A +R P++ P P++ +RL YL RYW E + LL L ++ Sbjct 71 D--DPAAWSARLRELPVVGAPGDFTPLVLDSANRL-YLHRYWSYESDLARALLRLADNKP 127 Query 135 ---RPAGVPDLRRLFPTG----FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALV 187 R + RLFP G D Q+ AA +S+ +TV+ GGPGTGKT+TV R+L L+ Sbjct 128 VFDRELLREGMSRLFPEGNAGETDWQQLAALACVSRQITVIAGGPGTGKTSTVFRVLILL 187 Query 188 AEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVT-LHRLLG 246 EQA AG + IALAAPTGKAA RL E++ + + ++ + VT +HRLLG Sbjct 188 IEQAT-AG--KCHIALAAPTGKAAGRLGESIISARSGMPVSEHVLQQIPNQVTTIHRLLG 244 Query 247 AKPGA-RFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVE 305 PG+ RFR +R N LP +V+VVDE SMVSL LMA+L +A+R RLIL+GD DQLASVE Sbjct 245 HVPGSSRFRYNRDNPLPFDVVVVDEASMVSLPLMAKLVDALRDTTRLILLGDRDQLASVE 304 Query 306 AGAVLADLVD-GFSVR----------------------DDALVAQ-------LRTSHRFG 335 AGAVL D+ + G S R DDA V LR S+RFG Sbjct 305 AGAVLGDICNTGSSQRLSKAFRDLAEEVIGPGAAIEYADDADVHHLNDSIIVLRKSYRFG 364 Query 336 --KVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPA-PRLRAVL-VPHALRLREAA 391 IG L + G+G A L LL SG++ + + E+ +L+ L V R Sbjct 365 ADSGIGELGRLVNEGNGAAALELL-SGQKYADLLFRENTGMEKLQEALAVTITDGFRPYL 423 Query 392 LLGASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLLVT 451 + ++ A A+L + R+LCA R GP G NR V LAE+ P WYAG+P++VT Sbjct 424 MAKTAESAFASLADFRILCALRQGPFGTEAVNRLVAKILAEKGLIRPHGRWYAGQPVMVT 483 Query 452 ANDYGLRVYNGDTGVVLAGPTG---LRAVISGASGPL-DVATGRLGDVETMHAMTIHKSQ 507 NDY LR++NGD G++L P LRA + G L + RL + ET AMT+HKSQ Sbjct 484 RNDYNLRLFNGDIGIILPDPAADNELRAFFTTTDGSLRSILPLRLPEHETAFAMTVHKSQ 543 Query 508 GSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLR 566 GS+ + +L+P S +LTREL+YTA+TRAK V V G + ARR +R SGLR Sbjct 544 GSEFSRILLLLPDRHSEVLTRELIYTALTRAKTGVEVCGPGDVFVKSSARRTLRKSGLR 602 >gi|148262657|ref|YP_001229363.1| exodeoxyribonuclease V subunit alpha [Geobacter uraniireducens Rf4] gi|146396157|gb|ABQ24790.1| DNA helicase/exodeoxyribonuclease V, alpha subunit [Geobacter uraniireducens Rf4] Length=601 Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 254/603 (43%), Positives = 327/603 (55%), Gaps = 67/603 (11%) Query 25 LDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLPWPDP 84 L+ D H A +C LAG D R+ LA A+ +A+ +G VC+DL S + DP Sbjct 6 LNDIDRHFAAFICRLAGTDDRRLWLAAALVSQAVGSGHVCLDLGSAMASEPATEEGIGDP 65 Query 85 ADWLAAVRASPLLADP----PVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPAGVP 140 A W +R P++ P P++ +RL YL RYWR E+Q+ A L+ RR A VP Sbjct 66 AAWGKQLRCWPVIGHPGDFTPLVLDRANRL-YLHRYWRYEQQLAAALI-----RRGAEVP 119 Query 141 ----------DLRRLFPTG----FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 +RRLFP D QR AA A+S+ V++GGPGTGKT+TV ++L L Sbjct 120 AAIDEALLKDGVRRLFPAQACGVTDWQRIAALAAVSRRFCVISGGPGTGKTSTVVKVLVL 179 Query 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRAR-LGDLHAVTLHRLL 245 + EQA AGE + RIALAAPTGKAAARL E++ +D +D R L TLHRLL Sbjct 180 LLEQA--AGE-KCRIALAAPTGKAAARLKESILGARGSIDCSDAVRELLPTDVSTLHRLL 236 Query 246 GAKPGAR-FRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 G G+ FR +R+N LP +VIVVDE SMVSL LMA+L +A+ ARLIL+GD DQLASV Sbjct 237 GFVRGSSCFRHNRENPLPFDVIVVDEASMVSLPLMAKLVDALADNARLILLGDRDQLASV 296 Query 305 EAGAVLADL-----VDGFS---------VRDDALVAQ----------------LRTSHRF 334 EAGAVL D+ V GFS + D L A+ LR S+RF Sbjct 297 EAGAVLGDISNTGAVHGFSRTFCDLAGRISGDPLAAEPYAEEASHRLHDAIVVLRKSYRF 356 Query 335 G--KVIGTLAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAAL 392 IG L + G+G A + LLR ++ PA RL L L Sbjct 357 AADSGIGALGNLVNEGNGAAAVALLRGKTFTDIALNGCPPAERLGETLAKSICAGYGPYL 416 Query 393 LG-ASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEE-TGQPPWTPWYAGRPLLV 450 G + A R+LCA R GP G NR V+A L E P WYAG+P++V Sbjct 417 KGNGAGEAHERFGRFRILCALRQGPYGTETVNRLVEAALVREGLINPQGHRWYAGQPVMV 476 Query 451 TANDYGLRVYNGDTGVVLAGP---TGLRAVISGASGPL-DVATGRLGDVETMHAMTIHKS 506 T NDY L+++NGD G++L P LRA A G L + RL + ET +AMT+HKS Sbjct 477 TRNDYALQLFNGDIGIILPDPAVDNELRAFFPAADGALRSILPLRLPEHETAYAMTVHKS 536 Query 507 QGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLR 566 QGS+ D V +L+P S +LTREL+YTA+TRAK V + + + AI RR R SGLR Sbjct 537 QGSEFDRVLLLLPDRQSDVLTRELIYTAITRAKTGVDLWAPDDLLMWAIERRIERKSGLR 596 Query 567 MRL 569 L Sbjct 597 ETL 599 >gi|322417956|ref|YP_004197179.1| exodeoxyribonuclease V subunit alpha [Geobacter sp. M18] gi|320124343|gb|ADW11903.1| exodeoxyribonuclease V, alpha subunit [Geobacter sp. M18] Length=599 Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 243/608 (40%), Positives = 321/608 (53%), Gaps = 83/608 (13%) Query 25 LDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDL---LSIARVAGHDDLPW 81 L+ D A +C AG D+ + A A+ R + AG VC+DL L R AG+ Sbjct 8 LNDIDRQFAAFICRQAGSRDQHLEAAAALLSRGVTAGDVCLDLAGALEQGRAAGYR---L 64 Query 82 PDPADWLAAVRASPLLADP----PVLHLYDDRLLYLDRYWREEEQVCADLLALLTSRRPA 137 A W + A+P++ P P++ + DRL YL RYWR E ++ A++ PA Sbjct 65 ESAAAWRKRLAAAPVVGAPGEFKPLILDHADRL-YLQRYWRYENELAE---AIMKRGEPA 120 Query 138 GV------PDLRRLFPTG---FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVA 188 L RLFP D QR AA A+++ V++GGPGTGKT+TV ++L+L+ Sbjct 121 DFDRELLRKGLARLFPPTPGETDWQRIAALAAVTRRFCVISGGPGTGKTSTVVKVLSLLL 180 Query 189 EQAELAGEPRP-RIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLGA 247 EQ+E AG RIALAAPTGKAAARL E++ + K DA R + + TLHRLLG Sbjct 181 EQSEAAGTGNGLRIALAAPTGKAAARLKESISAGLDKADAGVRGLIPE-DVFTLHRLLGY 239 Query 248 KPGAR-FRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEA 306 G+ FR + N LP++V++VDE SMVSL LMA+L A+R RLIL+GD DQLASVEA Sbjct 240 LKGSSGFRHNSDNLLPYDVVIVDEASMVSLPLMAKLVCALRQDTRLILLGDRDQLASVEA 299 Query 307 GAVLADLVD-----GFS---------VRDDALVAQ------------LRTSHRFGKVIGT 340 GAVL D+ D GFS V DA+ Q LR S+RF Sbjct 300 GAVLGDMCDTGGVHGFSCDFASLAAVVAGDAVSVQPGIGPLGDAVVLLRKSYRFSA---- 355 Query 341 LAEAIRAGDGDAVLGLLRSGEERIEFVDDEDPA---------PRLRAVLVPHALRLREAA 391 AG V L+ +G+ DPA P + A R+ E Sbjct 356 ------AGGIGKVGALVNAGDAPAALAACLDPALADVSLATLPPANGLADALAKRITEG- 408 Query 392 LLGAS------DVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQPPWTPWYAG 445 GA + A A R+LCA R GP GV N V+ LA+ P WYAG Sbjct 409 -FGAYLREQSPEQAFAQFSRFRILCAMRSGPYGVEAINLLVRQRLAQAGLIKPHGRWYAG 467 Query 446 RPLLVTANDYGLRVYNGDTGVVL--AGPTG-LRAVI-SGASGPLDVATGRLGDVETMHAM 501 P+++T NDY L ++NGD G++L A G LRA SG+ G V RL + E AM Sbjct 468 EPVMITKNDYNLGLFNGDVGLILPDAESEGELRAFFPSGSGGMRKVLPLRLPEYECAFAM 527 Query 502 TIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVR 561 T+HKSQGS+ D V +++P D+ +LTRELLYTA+TRAK V ++ +E A + RR +R Sbjct 528 TVHKSQGSEFDRVLLVLPDRDTPVLTRELLYTAITRAKNSVEMLATEQLFLATVERRVIR 587 Query 562 ASGLRMRL 569 SGLR RL Sbjct 588 RSGLRERL 595 >gi|309812453|ref|ZP_07706208.1| exodeoxyribonuclease V, alpha subunit [Dermacoccus sp. Ellin185] gi|308433758|gb|EFP57635.1| exodeoxyribonuclease V, alpha subunit [Dermacoccus sp. Ellin185] Length=622 Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 232/525 (45%), Positives = 296/525 (57%), Gaps = 54/525 (10%) Query 82 PDPADWLAAVRASPLLADPPVLHLYDD-------RLLYLDRYWREEEQVC------ADLL 128 PDPA VRAS L A V+HL D LL +DR+ R+E + LL Sbjct 111 PDPAALADLVRASAL-AHQGVVHLRGDGADAADPPLLIMDRHDRDENLIADLIAQRQSLL 169 Query 129 ALLTSRRPAGVPDLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVA 188 A LT++ A D D QR A L++ +TVLTGGPG GKT T+A ++ A Sbjct 170 APLTTQSQAEA-DAAIAGIALDDAQRGAVHSVLTRSLTVLTGGPGMGKTYTLAAIIR--A 226 Query 189 EQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG-- 246 A L + R +ALAAPTGKAAAR+ E++R DA A+TLHRLLG Sbjct 227 AHAGLGADLR--LALAAPTGKAAARMTESLRENGVGPDAAP-------DAITLHRLLGWD 277 Query 247 AKPGARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEA 306 RF D N LPH+++VVDE SM+SL + ARL EA++P ARL+LVGD DQLASVEA Sbjct 278 RTNSQRFVHDASNPLPHDLVVVDEASMLSLAMTARLLEALKPTARLLLVGDPDQLASVEA 337 Query 307 GAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGD----AVLGLLRSGEE 362 G+VL+DLV G DDA + +L T HR + LA A A D V +LR G Sbjct 338 GSVLSDLVSGL---DDAQIVRLTTHHRLSESRRDLALAFAAPTPDEQVAGVTAVLRGGRG 394 Query 363 RIEFVDDEDPAPRLRAVLVPH----ALRLREAALLGASDVALATLDEHRLLCAHRDGPTG 418 +E + + D + +PH A +LR+AA G D AL L HRLLCAHR GP G Sbjct 395 DVEHLSEGD----VDLAALPHVAESAWQLRQAAAAGDRDAALGALRHHRLLCAHRTGPYG 450 Query 419 VLHWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVLAGPTGLRAVI 478 V WNR V+A LA+ Y GRP++VT ND L ++NGDTGVV+ G R V+ Sbjct 451 VARWNRLVEASLADRGVDIVAGRMYVGRPVIVTKNDPSLGLFNGDTGVVI--DAGGRLVV 508 Query 479 SGASGP---------LDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRE 529 G + + RL DVETMHAMT+HK+QGSQ + VTV++P SRLLTRE Sbjct 509 LVDRGQKAGEETKKRTEFSPWRLADVETMHAMTVHKAQGSQAEHVTVIVPPVGSRLLTRE 568 Query 530 LLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRLQSTGC 574 +LYTA+TRA + VVG++ ++ A+ RASGL RL+ T Sbjct 569 MLYTALTRASAHLTVVGTDDAIEHAVRTPVRRASGLARRLRETNI 613 Lambda K H 0.321 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1294978659540 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40