BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0630c Length=1094 Score E Sequences producing significant alignments: (Bits) Value gi|308376460|ref|ZP_07438909.2| exonuclease subunit V beta recB ... 2178 0.0 gi|15607770|ref|NP_215144.1| exonuclease V beta chain [Mycobacte... 2177 0.0 gi|289744345|ref|ZP_06503723.1| exonuclease subunit V beta recB ... 2176 0.0 gi|289446185|ref|ZP_06435929.1| exonuclease subunit V beta recB ... 2174 0.0 gi|326905148|gb|EGE52081.1| exonuclease subunit V beta recB [Myc... 2173 0.0 gi|289442022|ref|ZP_06431766.1| exodeoxyribonuclease V, beta sub... 2172 0.0 gi|340625647|ref|YP_004744099.1| putative exonuclease V subunit ... 2153 0.0 gi|31791812|ref|NP_854305.1| exonuclease V subunit beta [Mycobac... 1637 0.0 gi|121636549|ref|YP_976772.1| putative exonuclease V subunit bet... 1634 0.0 gi|240169399|ref|ZP_04748058.1| exonuclease V beta subunit recB ... 1571 0.0 gi|289749131|ref|ZP_06508509.1| exonuclease V beta subunit recB ... 1478 0.0 gi|342858879|ref|ZP_08715533.1| exodeoxyribonuclease V, beta sub... 1380 0.0 gi|333989283|ref|YP_004521897.1| exodeoxyribonuclease V (subunit... 1359 0.0 gi|254823035|ref|ZP_05228036.1| exodeoxyribonuclease V, beta sub... 1359 0.0 gi|296168414|ref|ZP_06850294.1| exodeoxyribonuclease V beta subu... 1358 0.0 gi|120402221|ref|YP_952050.1| exodeoxyribonuclease V subunit bet... 1342 0.0 gi|254776976|ref|ZP_05218492.1| exodeoxyribonuclease V, beta sub... 1338 0.0 gi|118465710|ref|YP_883674.1| exodeoxyribonuclease V, beta subun... 1335 0.0 gi|183980978|ref|YP_001849269.1| exodeoxyribonuclease V (beta ch... 1329 0.0 gi|108797875|ref|YP_638072.1| DNA helicase/exodeoxyribonuclease ... 1326 0.0 gi|118616501|ref|YP_904833.1| exodeoxyribonuclease V (beta chain... 1324 0.0 gi|126433515|ref|YP_001069206.1| exodeoxyribonuclease V subunit ... 1324 0.0 gi|118467867|ref|YP_885717.1| exodeoxyribonuclease V subunit bet... 1313 0.0 gi|289568567|ref|ZP_06448794.1| exonuclease subunit V beta recB ... 1283 0.0 gi|145225706|ref|YP_001136384.1| exodeoxyribonuclease V subunit ... 1277 0.0 gi|315446057|ref|YP_004078936.1| DNA helicase/exodeoxyribonuclea... 1275 0.0 gi|169627503|ref|YP_001701152.1| exodeoxyribonuclease V subunit ... 1275 0.0 gi|284031863|ref|YP_003381794.1| exodeoxyribonuclease V subunit ... 1202 0.0 gi|289760753|ref|ZP_06520131.1| exodeoxyribonuclease V beta chai... 1060 0.0 gi|298524119|ref|ZP_07011528.1| conserved hypothetical protein [... 1003 0.0 gi|298524120|ref|ZP_07011529.1| exonuclease V beta subunit recB ... 951 0.0 gi|119714519|ref|YP_921484.1| exodeoxyribonuclease V subunit bet... 932 0.0 gi|258654033|ref|YP_003203189.1| exodeoxyribonuclease V subunit ... 839 0.0 gi|41410190|ref|NP_963026.1| hypothetical protein MAP4092c [Myco... 762 0.0 gi|331697795|ref|YP_004334034.1| exodeoxyribonuclease V subunit ... 759 0.0 gi|336460588|gb|EGO39481.1| hypothetical protein MAPs_39440 [Myc... 746 0.0 gi|334336344|ref|YP_004541496.1| exodeoxyribonuclease V, beta su... 738 0.0 gi|333920629|ref|YP_004494210.1| exodeoxyribonuclease V subunit ... 733 0.0 gi|111018834|ref|YP_701806.1| exodeoxyribonuclease V beta subuni... 733 0.0 gi|336118818|ref|YP_004573590.1| exodeoxyribonuclease V subunit ... 726 0.0 gi|226304347|ref|YP_002764305.1| exodeoxyribonuclease V beta cha... 725 0.0 gi|54024515|ref|YP_118757.1| putative RecB protein [Nocardia far... 721 0.0 gi|229494476|ref|ZP_04388239.1| exodeoxyribonuclease V, beta sub... 715 0.0 gi|226360933|ref|YP_002778711.1| exodeoxyribonuclease V beta cha... 709 0.0 gi|325673659|ref|ZP_08153350.1| exodeoxyribonuclease V beta subu... 706 0.0 gi|312139063|ref|YP_004006399.1| exodeoxyribonuclease v beta sub... 703 0.0 gi|296130268|ref|YP_003637518.1| Exodeoxyribonuclease V [Cellulo... 699 0.0 gi|336321365|ref|YP_004601333.1| Exodeoxyribonuclease V [Cellvib... 689 0.0 gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V beta sub... 686 0.0 gi|309812345|ref|ZP_07706100.1| exodeoxyribonuclease V, beta sub... 664 0.0 >gi|308376460|ref|ZP_07438909.2| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu008] gi|308351040|gb|EFP39891.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu008] Length=1106 Score = 2178 bits (5643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1094/1094 (100%), Positives = 1094/1094 (100%), Gaps = 0/1094 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 13 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 72 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 73 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 132 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 133 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 192 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 193 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 252 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 253 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 312 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 313 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 372 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 373 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 432 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 433 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 492 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 493 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 552 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 553 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 612 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 613 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 672 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 673 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 732 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 733 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 792 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 793 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 852 Query 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL Sbjct 853 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 912 Query 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG Sbjct 913 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 972 Query 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA Sbjct 973 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1032 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV Sbjct 1033 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1092 Query 1081 VALSDLLDRGRLQS 1094 VALSDLLDRGRLQS Sbjct 1093 VALSDLLDRGRLQS 1106 >gi|15607770|ref|NP_215144.1| exonuclease V beta chain [Mycobacterium tuberculosis H37Rv] gi|15840031|ref|NP_335068.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis CDC1551] gi|148660402|ref|YP_001281925.1| exodeoxyribonuclease V subunit beta [Mycobacterium tuberculosis H37Ra] 42 more sequence titles Length=1094 Score = 2177 bits (5640), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1094/1094 (100%), Positives = 1094/1094 (100%), Gaps = 0/1094 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL Sbjct 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 Query 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG Sbjct 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 Query 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA Sbjct 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV Sbjct 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 Query 1081 VALSDLLDRGRLQS 1094 VALSDLLDRGRLQS Sbjct 1081 VALSDLLDRGRLQS 1094 >gi|289744345|ref|ZP_06503723.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis 02_1987] gi|289684873|gb|EFD52361.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis 02_1987] Length=1094 Score = 2176 bits (5638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1093/1094 (99%), Positives = 1093/1094 (99%), Gaps = 0/1094 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRID TWRRTS Sbjct 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDITWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL Sbjct 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 Query 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG Sbjct 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 Query 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA Sbjct 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV Sbjct 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 Query 1081 VALSDLLDRGRLQS 1094 VALSDLLDRGRLQS Sbjct 1081 VALSDLLDRGRLQS 1094 >gi|289446185|ref|ZP_06435929.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A] gi|289573232|ref|ZP_06453459.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85] gi|339630698|ref|YP_004722340.1| exonuclease V subunit beta [Mycobacterium africanum GM041182] gi|289419143|gb|EFD16344.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A] gi|289537663|gb|EFD42241.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85] gi|339330054|emb|CCC25709.1| putative exonuclease V (beta chain) RECB (exodeoxyribonuclease V beta chain) [Mycobacterium africanum GM041182] Length=1094 Score = 2174 bits (5632), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1093/1094 (99%), Positives = 1093/1094 (99%), Gaps = 0/1094 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAV AAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVFAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL Sbjct 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 Query 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG Sbjct 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 Query 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA Sbjct 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV Sbjct 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 Query 1081 VALSDLLDRGRLQS 1094 VALSDLLDRGRLQS Sbjct 1081 VALSDLLDRGRLQS 1094 >gi|326905148|gb|EGE52081.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis W-148] Length=1094 Score = 2173 bits (5630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1093/1094 (99%), Positives = 1093/1094 (99%), Gaps = 0/1094 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLRE ADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLRECADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL Sbjct 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 Query 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG Sbjct 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 Query 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA Sbjct 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV Sbjct 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 Query 1081 VALSDLLDRGRLQS 1094 VALSDLLDRGRLQS Sbjct 1081 VALSDLLDRGRLQS 1094 >gi|289442022|ref|ZP_06431766.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis T46] gi|289752672|ref|ZP_06512050.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054] gi|289414941|gb|EFD12181.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis T46] gi|289693259|gb|EFD60688.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054] Length=1094 Score = 2172 bits (5629), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1093/1094 (99%), Positives = 1093/1094 (99%), Gaps = 0/1094 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 721 LRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL Sbjct 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 Query 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG Sbjct 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 Query 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA Sbjct 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV Sbjct 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 Query 1081 VALSDLLDRGRLQS 1094 VALSDLLDRGRLQS Sbjct 1081 VALSDLLDRGRLQS 1094 >gi|340625647|ref|YP_004744099.1| putative exonuclease V subunit beta [Mycobacterium canettii CIPT 140010059] gi|340003837|emb|CCC42967.1| putative exonuclease V (beta chain) RECB (exodeoxyribonuclease V beta chain)(exodeoxyribonuclease V polypeptide) (chi-specific endonuclease) [Mycobacterium canettii CIPT 140010059] Length=1094 Score = 2153 bits (5578), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1083/1094 (99%), Positives = 1086/1094 (99%), Gaps = 0/1094 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQG APPSGELVEHLLRGSDAERAQKR RLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGGAPPSGELVEHLLRGSDAERAQKRLRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDP+LTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPDLTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRP DPEPGSKAAVRLRFA EVLEELE RKGRLR QGFNDLLIRLA+A Sbjct 181 LALAVVDDPCAQLRPRDPEPGSKAAVRLRFATEVLEELEHRKGRLRVQGFNDLLIRLASA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFS HSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSGHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYL AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLTAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLH+AAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHQAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL Sbjct 841 LETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTL 900 Query 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG Sbjct 901 RQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAG 960 Query 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA Sbjct 961 LGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQA 1020 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV Sbjct 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 Query 1081 VALSDLLDRGRLQS 1094 VALSDLLDRGRLQS Sbjct 1081 VALSDLLDRGRLQS 1094 >gi|31791812|ref|NP_854305.1| exonuclease V subunit beta [Mycobacterium bovis AF2122/97] gi|31617399|emb|CAD93509.1| PROBABLE EXONUCLEASE V (BETA CHAIN) RECBA [FIRST PART] (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) [Mycobacterium bovis AF2122/97] Length=897 Score = 1637 bits (4239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 861/868 (99%), Positives = 862/868 (99%), Gaps = 3/868 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEA+GALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEALGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAV AAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVFAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQV---RRHAPW 865 LETADPAAPDLAAELEAQV RR PW Sbjct 841 LETADPAAPDLAAELEAQVPGTRRGGPW 868 >gi|121636549|ref|YP_976772.1| putative exonuclease V subunit beta recBa [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989021|ref|YP_002643708.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|121492196|emb|CAL70663.1| Probable exonuclease V (beta chain) recBa [first part] [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772134|dbj|BAH24940.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|341600565|emb|CCC63235.1| probable exonuclease V (beta chain) recBa [first part] [Mycobacterium bovis BCG str. Moreau RDJ] Length=897 Score = 1634 bits (4231), Expect = 0.0, Method: Compositional matrix adjust. Identities = 860/868 (99%), Positives = 861/868 (99%), Gaps = 3/868 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEA+GALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEALGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTL EWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLHEWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS Sbjct 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTS 780 Query 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAV 840 YSDLVRGSEAVTVTSEPAAGGRADEVEIAV AAPGSGADLTSPLAALPSGASFGSLVHAV Sbjct 781 YSDLVRGSEAVTVTSEPAAGGRADEVEIAVFAAPGSGADLTSPLAALPSGASFGSLVHAV 840 Query 841 LETADPAAPDLAAELEAQV---RRHAPW 865 LETADPAAPDLAAELEAQV RR PW Sbjct 841 LETADPAAPDLAAELEAQVPGTRRGGPW 868 >gi|240169399|ref|ZP_04748058.1| exonuclease V beta subunit recB [Mycobacterium kansasii ATCC 12478] Length=1089 Score = 1571 bits (4068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 833/1095 (77%), Positives = 905/1095 (83%), Gaps = 13/1095 (1%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M+RF+LLGPLP G T VLEASAGTGKTFALAGLVTRYLAET TLDEMLLITFNRAASR Sbjct 1 MERFDLLGPLPAHGATIVLEASAGTGKTFALAGLVTRYLAETDVTLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVR QIV AV AL G P +LV HLL GS+AERA + +RLRDALANFDAATIAT Sbjct 61 ELRERVRDQIVAAVAALDGRMPTDTDLVRHLL-GSEAERAVRLARLRDALANFDAATIAT 119 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVL+SLGVAGD+ + L+ESL DLV EIVDDRYLA F +TDP LTYA+AL Sbjct 120 THEFCGSVLRSLGVAGDSDSGFTLRESLDDLVAEIVDDRYLARFANTDTDPALTYAQALD 179 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LA VV DP AQ RP DP+P S A VRL FA +VL+ELERRK RLR G++DLL+RL+ A Sbjct 180 LARNVVGDPYAQRRPLDPDPDSAAGVRLDFAEQVLDELERRKRRLRILGYDDLLLRLSKA 239 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 L AADSPARDRMR RWRIVLVDEFQDTDP+QW+VLERAF S LI+IGDPKQAIYGFRG Sbjct 240 LAAADSPARDRMRRRWRIVLVDEFQDTDPIQWQVLERAFRGVSTLIMIGDPKQAIYGFRG 299 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDI+TYLKAA TADARYT GVNWRSDR LVESLQTVLR A LGH +IVV +AHH GHR Sbjct 300 GDIYTYLKAARTADARYTFGVNWRSDRVLVESLQTVLRGAALGHPEIVVHDIEAHHGGHR 359 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 L APR APFRLRVV+R T+GYDGTA+VPI LR HIP DLA D+A+LL+SGA FA RPV Sbjct 360 LQGAPRGAPFRLRVVRRPTVGYDGTANVPIGVLREHIPADLAGDIASLLSSGARFAERPV 419 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 A DIAVIVEHH+DARACR+ALA AGIPA+YTGDTDVFAS+AAKDWLCLLEAFDAPQRSG Sbjct 420 AAGDIAVIVEHHRDARACRDALARAGIPAVYTGDTDVFASRAAKDWLCLLEAFDAPQRSG 479 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGET E+LAAEGDALTDRVA TLREW D AR RGVAAVF+AAQLAGMGRR Sbjct 480 LVRAAACTMFFGETVETLAAEGDALTDRVAATLREWTDQARLRGVAAVFEAAQLAGMGRR 539 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VL QRGGER +TDLAH+AQLLHE AHR+R GLP LRDWLRRQ E NRRLDSDA Sbjct 540 VLGQRGGERHMTDLAHLAQLLHETAHRQRYGLPALRDWLRRQCDDTTRAAEQNRRLDSDA 599 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDD-GTRCLYIGGKDGGAQRRTV 659 AAVQIMTVFVAKGLQFPIVY+PF FNRNVR +DI+LYHDD TRCLY+GG + R+V Sbjct 600 AAVQIMTVFVAKGLQFPIVYVPFLFNRNVRREDIMLYHDDTDTRCLYLGGDNS----RSV 655 Query 660 EGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRC 719 E LNR EAA DN+RLTYVALTRAQSQVVAWWAPT DEVNGGLSRLLRGR G VPD+C Sbjct 656 EELNRAEAARDNIRLTYVALTRAQSQVVAWWAPTIDEVNGGLSRLLRGRGSGDPLVPDKC 715 Query 720 TPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRT 779 PR+ D+ AWAVF +W+ AGGPSVEES I + +++E GF VRHFHR+IDTTWRRT Sbjct 716 APRIRDDDAWAVFTRWQEAGGPSVEESTIVSPAAIETASSADGFAVRHFHRQIDTTWRRT 775 Query 780 SYSDLVRGSEAVT---VTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSL 836 SYS LVR ++A+ VTSEP R DEV+ VV+ PGSGADL SPLAA+PSGA+FGSL Sbjct 776 SYSALVRAADAIVTSGVTSEPEVDVRDDEVDAVVVSEPGSGADLDSPLAAMPSGAAFGSL 835 Query 837 VHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAA 896 VHAVLETADP A DLA ELE QVRRHAPWW VD D A ELA AL+PMHD+PLG A Sbjct 836 VHAVLETADPQAADLAGELEEQVRRHAPWWPVDTD----AAELATALVPMHDSPLGLLAG 891 Query 897 ALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRL 956 LTLRQIGVRDRLRELDFE+PLAGGDLR R+P VSL+DVGELL HLP DP YADRL Sbjct 892 DLTLRQIGVRDRLRELDFEIPLAGGDLRARAPRVSLSDVGELLRVHLPRSDPFWSYADRL 951 Query 957 GSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDY 1016 S GLG Q LRGYL+GSIDVVLRLP QRYLVVDYKTNHLG TAADY +RLTEAMLHSDY Sbjct 952 TSPGLGGQSLRGYLSGSIDVVLRLPQQRYLVVDYKTNHLGATAADYSVDRLTEAMLHSDY 1011 Query 1017 PLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPP 1076 PLQALLYVVVLHRFLRWRQ Y P RHLGGVLYLFVRGMCGA TP+ GHPAGVF W P Sbjct 1012 PLQALLYVVVLHRFLRWRQPGYDPRRHLGGVLYLFVRGMCGAGTPIRDGHPAGVFGWRAP 1071 Query 1077 TALVVALSDLLDRGR 1091 LVVALSDLLD GR Sbjct 1072 ADLVVALSDLLDDGR 1086 >gi|289749131|ref|ZP_06508509.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92] gi|289689718|gb|EFD57147.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92] Length=799 Score = 1478 bits (3826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 767/775 (99%), Positives = 767/775 (99%), Gaps = 1/775 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGK FALAGLVTRYLAET ATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKPFALAGLVTRYLAETDATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT Sbjct 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 Query 721 PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRH-FHRRIDT 774 RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVR F IDT Sbjct 721 LRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRALFTAGIDT 775 >gi|342858879|ref|ZP_08715533.1| exodeoxyribonuclease V, beta subunit [Mycobacterium colombiense CECT 3035] gi|342133120|gb|EGT86323.1| exodeoxyribonuclease V, beta subunit [Mycobacterium colombiense CECT 3035] Length=1100 Score = 1380 bits (3573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 727/1103 (66%), Positives = 843/1103 (77%), Gaps = 24/1103 (2%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M+RF+LLG LP E +TTVLEASAGTGKTFALAGLVTRY+A+ AA LD+MLLITF RAAS+ Sbjct 1 MERFDLLGALPAERSTTVLEASAGTGKTFALAGLVTRYIADGAAKLDQMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAPPS----GELVEHLLRGSDAERAQKRSRLRDALANFDAA 116 ELRERVR QIV+AV A A PS ++V +LL G+D +RA + RLRDALA FDAA Sbjct 61 ELRERVRCQIVDAVRAF---ADPSTAGDNQVVAYLLDGTDQQRAAREQRLRDALAGFDAA 117 Query 117 TIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYA 176 TIATTH+FC VL+SLG+AGD AA V L +SL DLVTEIVDD YLA+FG++ DP L Y Sbjct 118 TIATTHQFCQLVLRSLGIAGDTAAGVTLLDSLDDLVTEIVDDLYLAHFGQERDDPALHYR 177 Query 177 EALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIR 236 EAL LA V +P QLRP P+P S+AA +RFA +VL EL+ RK RL ++DLLIR Sbjct 178 EALRLAREVAKNPSTQLRPLHPDPDSRAAASVRFANDVLAELDTRKRRLGVLDYDDLLIR 237 Query 237 LATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIY 296 LA AL DSPAR RM +RW IV+VDEFQDTDP+QW+V++RAFS S ++LIGDPKQAIY Sbjct 238 LADALATDDSPARLRMHQRWPIVMVDEFQDTDPVQWQVIDRAFSGRSTVVLIGDPKQAIY 297 Query 297 GFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHH 356 FRGGDI TYL+AA TA R TL NWRSD AL++ LQ VLR A LG IVV DAHH Sbjct 298 AFRGGDIVTYLRAAETAGERKTLATNWRSDSALLQRLQVVLRGAQLGDPAIVVNDVDAHH 357 Query 357 AGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFA 416 GHRLA APR PFRLRVV R TLG G ++PI+ +R HI DLA+D+ ALLASGATFA Sbjct 358 RGHRLAGAPRNDPFRLRVVARKTLGRRGVQNLPIDQVREHIGADLASDIRALLASGATFA 417 Query 417 GRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAP 476 GRP+ A DIAVIVE H+DA AC AL AG+PA+YTG++DVF S+AA+DWLCLLEAFD P Sbjct 418 GRPLAARDIAVIVEKHRDAHACFKALCAAGVPAVYTGNSDVFTSEAAEDWLCLLEAFDQP 477 Query 477 QRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAG 536 R G+VRAAA TMFFGETAE+LAA GDALTDR+A TLREWA HAR RGVAA+F+AAQL G Sbjct 478 HRPGMVRAAAATMFFGETAETLAAGGDALTDRIAKTLREWAGHARERGVAAIFEAAQLLG 537 Query 537 MGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRL 596 MG R+L+ +GGER +TDLAHI QLL + AHRE LP LRDWLRRQ +G PE NRRL Sbjct 538 MGNRLLTWQGGERHMTDLAHITQLLQDVAHREHYSLPALRDWLRRQRDERSGAPERNRRL 597 Query 597 DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHD-DGTRCLYIGGKDGGAQ 655 DSDAAAVQIMTVFV+KGLQ+PIVYLPFAFNRN + D++L+HD DGTRCL++GGKD Sbjct 598 DSDAAAVQIMTVFVSKGLQYPIVYLPFAFNRNTQDSDVVLFHDEDGTRCLHVGGKD-SPD 656 Query 656 RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQV 715 + VE L R E A D+ RLTYVALTRAQ+QVVAWW+P + E NGGLSRLLRGRRPG+ V Sbjct 657 FKAVERLGRKEDASDDSRLTYVALTRAQTQVVAWWSPAYYEPNGGLSRLLRGRRPGEPVV 716 Query 716 PDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLE-KPVPVPGFEVRHFHRRID 773 PDRC P +V+D A A +WEAAGGP +EES++ A SL +PVP G + RHFHR ID Sbjct 717 PDRCEPAKVSDADAMARLREWEAAGGPVIEESLVAAAPSLPAEPVPT-GLQNRHFHRGID 775 Query 774 TTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASF 833 T WRRTSYS L+R ++A V+SEP G DE + + SG D+ SP+A LP+GA+F Sbjct 776 TGWRRTSYSGLIRAAQASGVSSEPEIGELDDEAGDIPLVSAASGPDVPSPMADLPAGATF 835 Query 834 GSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGP 893 G+LVHAVLETADP APDLAAEL+AQ+ HA WW V A ELA A++PMHDTPLGP Sbjct 836 GTLVHAVLETADPFAPDLAAELQAQIVAHAAWWPV----AATPEELAAAMVPMHDTPLGP 891 Query 894 AAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYA 953 TLRQIG+ DRLRELDFE+PLAGGD +P V +AD+ LL HLP DD L+ YA Sbjct 892 LTGGRTLRQIGLSDRLRELDFEIPLAGGDRGPTAPRVRVADLAPLLREHLPADDVLASYA 951 Query 954 DRLGSAGLGDQPLRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFE 1005 DRL GLGDQPLRGYL GSID VLR+P G RY+VVDYKTN LGD TAADY Sbjct 952 DRLAEHGLGDQPLRGYLTGSIDAVLRVPDGAGHRYVVVDYKTNRLGDPERPLTAADYDRS 1011 Query 1006 RLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAG 1065 R+ EAMLHSDYP+QALLY VLHRFLRWR RDY P+RHLGGVLYLF+RGMCG TPV G Sbjct 1012 RMAEAMLHSDYPMQALLYCAVLHRFLRWRLRDYDPSRHLGGVLYLFLRGMCGPQTPVLDG 1071 Query 1066 HPAGVFTWNPPTALVVALSDLLD 1088 HPAGVF W PP +L+VALSDLLD Sbjct 1072 HPAGVFGWRPPWSLIVALSDLLD 1094 >gi|333989283|ref|YP_004521897.1| exodeoxyribonuclease V (subunit beta) RecB [Mycobacterium sp. JDM601] gi|333485251|gb|AEF34643.1| exodeoxyribonuclease V (beta chain) RecB [Mycobacterium sp. JDM601] Length=1097 Score = 1359 bits (3517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 729/1101 (67%), Positives = 831/1101 (76%), Gaps = 23/1101 (2%) Query 3 RFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASREL 62 RF+LLGPLP E +T VLEASAGTGKTF LAGLVTRYLA+ A +D++LLITF R ASREL Sbjct 4 RFDLLGPLPAERSTVVLEASAGTGKTFTLAGLVTRYLADGVARVDQLLLITFGRVASREL 63 Query 63 RERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTH 122 RERVRGQI +A+ L+G P+ +L HLL + E Q +RLR+ALA+FDAATI T H Sbjct 64 RERVRGQIGDALAVLEGRREPANDLEHHLL--TTGEAGQACARLRNALADFDAATIVTIH 121 Query 123 EFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALA 182 +FC VLKSLGVAGD A+ L ESLTDLVTEIVDD YLA FG E P +T EAL LA Sbjct 122 QFCAMVLKSLGVAGDTASTATLLESLTDLVTEIVDDHYLAYFGNDENKPPMTRKEALDLA 181 Query 183 LAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALE 242 VV+DP AQLRP P+P S+A VR FA VL+ELERRK RL G+NDLL RLA AL Sbjct 182 GRVVEDPAAQLRPQHPDPESEAGVRRAFAEAVLDELERRKRRLGLLGYNDLLTRLAEALR 241 Query 243 AADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRGGD 302 + S A +RMR RW IV+VDEFQDTDP+QW V++RAFS S L+LIGDPKQAIYGFRGGD Sbjct 242 RSGSDAAERMRRRWPIVMVDEFQDTDPVQWEVIDRAFSGQSTLVLIGDPKQAIYGFRGGD 301 Query 303 IHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLA 362 I+TYL A A R TL N+RSD+ALV+SLQTVL A LGH +IVV +AHH G+RL+ Sbjct 302 IYTYLAAVRAAGDRRTLATNYRSDKALVDSLQTVLDGAQLGHPEIVVPPIEAHHTGYRLS 361 Query 363 SAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVA 422 APR APFRLRVVKR TLG DG + I LR HIP DLAADV ALL SGA + RP+ A Sbjct 362 GAPRNAPFRLRVVKRPTLGKDGLDSLLIGPLREHIPADLAADVGALLNSGARYGDRPLCA 421 Query 423 ADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLV 482 DIA++VE H+DA CR+AL + GIP +YTGDTDVFAS+AA+DWLCLLEA D P R+GLV Sbjct 422 GDIAILVEQHQDAALCRDALTKLGIPVVYTGDTDVFASRAAEDWLCLLEALDQPGRTGLV 481 Query 483 RAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVL 542 RAAACTMFFGE+AESLA +GD+LTDRV TLREWADH R RGVAAV +AAQLAGMGRRVL Sbjct 482 RAAACTMFFGESAESLARDGDSLTDRVTETLREWADHVRLRGVAAVLEAAQLAGMGRRVL 541 Query 543 SQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAA 602 SQRGGER LTDLAHI +LLHEAAH +RLGLP LRDWLRRQ + G E NRRLDSDA A Sbjct 542 SQRGGERHLTDLAHIGELLHEAAHADRLGLPALRDWLRRQREDRTGAVERNRRLDSDAGA 601 Query 603 VQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGT-----RCLYIGGKDGGAQRR 657 VQIMTVF AKGLQFPIVYLPF F R + ++ LLYH+ G RCL+IGG Sbjct 602 VQIMTVFAAKGLQFPIVYLPFMFRRYIAAEGNLLYHETGNDGAEVRCLHIGGSRSPGM-A 660 Query 658 TVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPD 717 V+ L+R E A D++R+TYVALTRAQSQV+AWWAP DE+NGGLSRLLRGR PGQ++VPD Sbjct 661 AVKELHRREEALDHIRITYVALTRAQSQVIAWWAPAGDEINGGLSRLLRGRPPGQAEVPD 720 Query 718 RCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPV--PVPG-FEVRHFHRRIDT 774 RC R++D+ AWAVF W+ GGP VEESVIG ++ PV PG VRHFHR ID Sbjct 721 RCESRISDDDAWAVFTAWQDRGGPVVEESVIGPPTA---PVRREAPGELAVRHFHRHIDA 777 Query 775 TWRRTSYSDLVRGSEAVT---VTSEPAAGGRADEVEIAVV--AAPGSGADLTSPLAALPS 829 WRRTSYS L+RG++ V SEP A R DE E V AA G ++ SP+A LP Sbjct 778 GWRRTSYSALLRGAQEQAESGVHSEPDAHTRDDESEDVTVTRAAAADGVEVRSPMADLPG 837 Query 830 GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889 G +FGSLVH VLETADP A DLAAEL QVR H PWW + VD A LA AL+PMHDT Sbjct 838 GKTFGSLVHGVLETADPFAADLAAELTEQVRVHEPWWPIGVD----AETLAAALVPMHDT 893 Query 890 PLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPL 949 PLGP A LTLRQIG+ DRLRELDFE+PLAGGD + + +ADVG LL HL +DP Sbjct 894 PLGPLADGLTLRQIGLPDRLRELDFEIPLAGGDTAAAATQLRVADVGALLREHLAPEDPF 953 Query 950 SPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTE 1009 + YADRL S LG Q LRGYL+GS+DVVLRLP QRYLVVDYKTN+LG+TAADY R+TE Sbjct 954 AVYADRLLSEALGGQSLRGYLSGSLDVVLRLPDQRYLVVDYKTNNLGETAADYSPPRMTE 1013 Query 1010 AMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAG 1069 AMLHSDYPLQALLY VLHRFLRWRQ DY P RHLGGVLYLFVRGMCG TP+ G+PAG Sbjct 1014 AMLHSDYPLQALLYTAVLHRFLRWRQPDYDPDRHLGGVLYLFVRGMCGPDTPILGGYPAG 1073 Query 1070 VFTWNPPTALVVALSDLLDRG 1090 VF+W PP ALVVALSDLL +G Sbjct 1074 VFSWRPPAALVVALSDLLQQG 1094 >gi|254823035|ref|ZP_05228036.1| exodeoxyribonuclease V, beta subunit [Mycobacterium intracellulare ATCC 13950] Length=1100 Score = 1359 bits (3517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 733/1102 (67%), Positives = 837/1102 (76%), Gaps = 22/1102 (1%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M RF+LLGPLP E +TTVLEASAGTGKTFALAGLVTRYLA+ AA+LD+MLLITF RAAS+ Sbjct 1 MQRFDLLGPLPAERSTTVLEASAGTGKTFALAGLVTRYLADGAASLDQMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAPPS----GELVEHLLRGSDAERAQKRSRLRDALANFDAA 116 ELRERVR QIV+AV A A PS +LV +LL G+D +RA +R RLRDALA FDAA Sbjct 61 ELRERVRCQIVDAVRAF---ADPSTVGDNQLVAYLLDGTDDQRAARRQRLRDALAGFDAA 117 Query 117 TIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYA 176 TIATTH+FC VL+SLGVAGD AA V L +SL DLVTEIVDD YLA+FG++ DP L Y+ Sbjct 118 TIATTHQFCQLVLRSLGVAGDTAASVTLLDSLDDLVTEIVDDLYLAHFGQERDDPALHYS 177 Query 177 EALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIR 236 EAL LA VV++P QLRP DP+P S+AAV LRFA +VL EL+ RK RL G++DLL R Sbjct 178 EALRLAREVVNNPSTQLRPRDPDPDSRAAVCLRFANDVLAELDTRKRRLGVLGYDDLLTR 237 Query 237 LATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIY 296 LA AL SPAR RM +RW IV+VDEFQDTDP+QW+V++RAFS S +ILIGDPKQAIY Sbjct 238 LADALATDGSPARLRMHQRWPIVMVDEFQDTDPVQWQVIDRAFSGRSTVILIGDPKQAIY 297 Query 297 GFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHH 356 FRGGDI TYL+AA TA R TL NWRSD ALV LQ VLR A LG IVV AHH Sbjct 298 AFRGGDIVTYLRAAQTAGERKTLDTNWRSDSALVARLQVVLRGAQLGDPAIVVNDVGAHH 357 Query 357 AGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFA 416 GHRLA APR PFRLRVV R TLG G ++PI+ LR HI DLAAD+ ALLA+GATF Sbjct 358 RGHRLAGAPRNDPFRLRVVSRKTLGRRGIQNLPIDELREHIGADLAADIRALLAAGATFD 417 Query 417 GRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAP 476 G P+ A DIAVIVE H+DA AC AL AG+PA+YTG+TDVF S+AA+DWLCLLEAFD P Sbjct 418 GEPLQARDIAVIVERHRDAHACFKALCAAGVPAVYTGNTDVFTSEAAEDWLCLLEAFDQP 477 Query 477 QRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAG 536 R G+VRAAA TMFFGETA++LAA GDALTDR+A TLREWA HAR RGVAA+F+AAQL G Sbjct 478 HRPGMVRAAAATMFFGETAQTLAAGGDALTDRIAKTLREWAGHARERGVAAIFEAAQLLG 537 Query 537 MGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRL 596 M RVL RGGER +TDLAH+ QLL E AHRE GLP LRDWLRRQ G PE NRRL Sbjct 538 MRDRVLGWRGGERHMTDLAHVTQLLQEVAHREHYGLPALRDWLRRQRDERGGAPERNRRL 597 Query 597 DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHD-DGTRCLYIGGKDGGAQ 655 DSDAAAVQIMTVFV+KGLQ+PIVYLPFAFNRN + D++L+HD DGTRCL++GGKD Sbjct 598 DSDAAAVQIMTVFVSKGLQYPIVYLPFAFNRNTQDSDVVLFHDEDGTRCLHVGGKD-SPD 656 Query 656 RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQV 715 +TVE L R E A D+ RLTYVALTRAQ+QVVAWW+P + E NGGLSRLLRGRRPG V Sbjct 657 FKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYFEPNGGLSRLLRGRRPGDPVV 716 Query 716 PDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDT 774 PDRC P +V+D+ A A +WEAAGGP +E+SV+ SL + RHFHR IDT Sbjct 717 PDRCEPAKVSDDDALARLREWEAAGGPVIEDSVVAPAPSLPPAPVPRHLDSRHFHRAIDT 776 Query 775 TWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFG 834 TWRRTSYS L+R ++A V SEP G DEV +++P +G D+ SP+A LP+GA+FG Sbjct 777 TWRRTSYSGLIRVAQASGVGSEPDVAGLDDEVGDIPLSSPAAGPDVPSPMADLPAGATFG 836 Query 835 SLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPA 894 SLVHAVLETADP A DLAAELE +R H+ WW V A ELA A++PMHDTPLGP Sbjct 837 SLVHAVLETADPFAADLAAELEEHIREHSAWWPV----AATPEELAAAMVPMHDTPLGPL 892 Query 895 AAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYAD 954 A LTLR+IG+ DRLRELDFE+PLAGGD P+V LAD+ LL LP DDPL YAD Sbjct 893 ADGLTLRRIGLSDRLRELDFELPLAGGDRPSVGPEVRLADLAPLLRERLPPDDPLVSYAD 952 Query 955 RLGSAGLGDQPLRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFER 1006 RL LGDQ LRGYL GSID VLR+P G R++VVDYKTN LGD +AADY R Sbjct 953 RLTDRALGDQSLRGYLTGSIDAVLRIPDGAGHRFVVVDYKTNLLGDPERPLSAADYDRPR 1012 Query 1007 LTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGH 1066 + EAMLHSDYPLQALLY VLHRFLRWR RDY P RHLGGVLYLFVRGMCGA TPV GH Sbjct 1013 MAEAMLHSDYPLQALLYCAVLHRFLRWRIRDYDPDRHLGGVLYLFVRGMCGADTPVRDGH 1072 Query 1067 PAGVFTWNPPTALVVALSDLLD 1088 P GVF+W PP +L+ ALSDLLD Sbjct 1073 PCGVFSWRPPPSLITALSDLLD 1094 >gi|296168414|ref|ZP_06850294.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896708|gb|EFG76343.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=1103 Score = 1358 bits (3516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 739/1101 (68%), Positives = 836/1101 (76%), Gaps = 20/1101 (1%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M RFELLGPLP +TTVL+ASAGTGKTFALAGLVTRY+AE AATLD+MLLITF RAAS+ Sbjct 5 MARFELLGPLPTARSTTVLQASAGTGKTFALAGLVTRYVAEGAATLDQMLLITFGRAASQ 64 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQ+V+AV A D + ELV HLL G+DAERA +R RLRDALA FDAATIAT Sbjct 65 ELRERVRGQMVDAVAAFD-DGAGANELVAHLLDGTDAERASRRQRLRDALAGFDAATIAT 123 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH+FC VLKSLGVAGD AA+V L ESL +L+ EIVDD YLA+FGR+ DP L Y +AL Sbjct 124 THQFCQLVLKSLGVAGDTAANVTLLESLDELIVEIVDDLYLAHFGRERDDPALAYRDALR 183 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LA VV +P QLRP PEPGS+AAV + FA EVL EL+ RK RL ++DLL RLA A Sbjct 184 LAREVVRNPSTQLRPLHPEPGSRAAVCVGFAKEVLAELDTRKRRLGVLDYDDLLSRLADA 243 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 L DSPAR RM RW IV+VDEFQDTDP+QW+V++RAFS S +ILIGDPKQAIY FRG Sbjct 244 LATDDSPARVRMHHRWPIVMVDEFQDTDPVQWQVIDRAFSGRSTVILIGDPKQAIYAFRG 303 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDI TYL+AA TA + TL NWRSD ALVE LQ VL A LG IVV D +H GHR Sbjct 304 GDIVTYLRAAETAGEKKTLATNWRSDAALVERLQVVLLGAQLGDPAIVVDDVDTYHRGHR 363 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LA APR PFRLRVV+R TLG G ++PI+ LR HI D+AAD+ ALLA+ ATF GRP+ Sbjct 364 LAGAPRNDPFRLRVVQRETLGRSGIQNMPIDELRAHIGADVAADIRALLAARATFEGRPL 423 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 A DIAVIVE HKDA AC AL +AG+PA+YTGD+DVFAS AA+DWLCLLEAFD P R G Sbjct 424 QARDIAVIVEKHKDAAACFKALCDAGVPAVYTGDSDVFASDAAEDWLCLLEAFDQPHRPG 483 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 +VRAAA TMFFGETAESLAA GDALTDRVA TLREWA HAR RGVAA+F+AAQL+GMG R Sbjct 484 MVRAAAATMFFGETAESLAAGGDALTDRVAETLREWAGHARERGVAAIFEAAQLSGMGDR 543 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLS +GGER +TDLAHIAQLL + HRER LP LRDWLRRQ + G PE NRRLDSDA Sbjct 544 VLSAQGGERHMTDLAHIAQLLGQVTHRERSSLPALRDWLRRQREERVGAPERNRRLDSDA 603 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFV+KGLQ+PIVYLPFAFNRN + D++L+HDDG RCL+IGGKD + VE Sbjct 604 AAVQIMTVFVSKGLQYPIVYLPFAFNRNTQDRDVVLFHDDGVRCLHIGGKD-SPDFKAVE 662 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 L R E A D+ RLTYVALTRAQSQVVAWW+P FDE NGGLSRLLRGRRPG++ VPDRC Sbjct 663 ILGRKEDASDDSRLTYVALTRAQSQVVAWWSPAFDEPNGGLSRLLRGRRPGEAFVPDRCE 722 Query 721 P-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRT 779 P +++DE A +WEAAGGP +E SV+ A S+ G + RHFHR IDT WRRT Sbjct 723 PAKISDEDALDRLREWEAAGGPVIERSVVAAAPSVPPEPVPSGLDNRHFHRGIDTGWRRT 782 Query 780 SYSDLVRGSEAVTVT---SEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSL 836 SYS L+R +E T SEP DE VA SG SP+A LP GA FGSL Sbjct 783 SYSGLIRVTETFETTGVGSEPEVTELDDEAGDVPVAQGASGPAAPSPMADLPVGAKFGSL 842 Query 837 VHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPE-LARALLPMHDTPLGPAA 895 VHAVLETADP A DLAAEL A+VR H+ WW VDV P+ LA AL+PMHDTPLGP A Sbjct 843 VHAVLETADPLAADLAAELAARVRTHSVWWPVDV-----PPDALAAALVPMHDTPLGPLA 897 Query 896 AALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADR 955 TLRQIG+ DRLRELDFE PLAGGD P++ LAD+G L +HLP DD L+PYA R Sbjct 898 GGRTLRQIGLADRLRELDFEFPLAGGDAVSAGPEIRLADLGAALRTHLPADDALAPYAGR 957 Query 956 LGSAGLGDQPLRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFERL 1007 L S LG+QPLRGYL GS+D VLR+P +RYLVVDYKTN LGD T+ADY RL Sbjct 958 LLSRPLGEQPLRGYLTGSVDAVLRVPDGAARRYLVVDYKTNWLGDPDRPLTSADYDRPRL 1017 Query 1008 TEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHP 1067 EAMLHSDYPLQALLY VVLHRFLRWR DY P RHLGGVLYLFVRGMCGAATP GHP Sbjct 1018 VEAMLHSDYPLQALLYSVVLHRFLRWRLPDYHPDRHLGGVLYLFVRGMCGAATPAADGHP 1077 Query 1068 AGVFTWNPPTALVVALSDLLD 1088 +GVF+W PP+AL+ +SD+LD Sbjct 1078 SGVFSWRPPSALIAEVSDVLD 1098 >gi|120402221|ref|YP_952050.1| exodeoxyribonuclease V subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119955039|gb|ABM12044.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium vanbaalenii PYR-1] Length=1097 Score = 1342 bits (3474), Expect = 0.0, Method: Compositional matrix adjust. Identities = 722/1102 (66%), Positives = 821/1102 (75%), Gaps = 20/1102 (1%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M+ F+LLGPLP TTTVLEASAGTGKTFALAGLVTRY+AE ATLD+MLLITF RAAS+ Sbjct 1 MEPFDLLGPLPAPRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDQMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAPP---SGELVEHLLRGSDAERAQKRSRLRDALANFDAAT 117 ELRERVR QI++A+ A D P E+V HLL GS E ++R RLRDALA FDAAT Sbjct 61 ELRERVRAQILDALRAF--DDPSHAADNEIVAHLLTGSHGELTERRQRLRDALAGFDAAT 118 Query 118 IATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAE 177 IATTH+FC VL+SLGVAGD + VEL ESL DLVTEIVDD YLA+FG+ +P LTYA+ Sbjct 119 IATTHQFCQLVLRSLGVAGDTDSGVELVESLDDLVTEIVDDLYLAHFGQDHDEPLLTYAD 178 Query 178 ALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRL 237 AL+LA VV + +LRP DP PGS VR++FA V ELE RK RL ++DLL RL Sbjct 179 ALSLAREVVGNAHTELRPTDPPPGSDPFVRVQFARAVCAELETRKRRLGILHYDDLLSRL 238 Query 238 ATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYG 297 A ALE DSPAR RM+ RW IV+VDEFQDTDP+QW+V++ AFS H+ +ILIGDPKQAIY Sbjct 239 AKALEPQDSPARMRMQHRWSIVMVDEFQDTDPVQWQVIDCAFSGHATVILIGDPKQAIYA 298 Query 298 FRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHA 357 FRGGDI TYL A TAD + TLG N+RSD LV+SLQ V+RDA LG IV +AHH Sbjct 299 FRGGDIVTYLHAVSTADRQKTLGTNYRSDGPLVDSLQAVMRDAQLGDPRIVAHRVEAHHR 358 Query 358 GHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAG 417 HRLA APR APFRLRVV R G V I+ LRRHIP D+AAD+AALLAS ATF Sbjct 359 DHRLAGAPRNAPFRLRVVTRDQFGTRPDRVVAIDQLRRHIPQDMAADIAALLASDATFCD 418 Query 418 RPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQ 477 RPV D+AVIVE H+D AC +AL AGIPA+YTGD+DVF S AA DW+CLLEAFD P Sbjct 419 RPVQPGDVAVIVESHRDGHACFDALTAAGIPAVYTGDSDVFTSPAADDWMCLLEAFDQPH 478 Query 478 RSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGM 537 RSGLVRAAA TMFFGETAESLAAEGD LTDRVA TLR+WAD AR RGVAAVF+AAQL GM Sbjct 479 RSGLVRAAATTMFFGETAESLAAEGDTLTDRVAETLRQWADFARDRGVAAVFEAAQLGGM 538 Query 538 GRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLD 597 G RVLS GER +TDLAH+ Q+LH AHRE LP LRDWLR Q +G PE NRRLD Sbjct 539 GERVLSWVDGERHMTDLAHLTQVLHGTAHREHFSLPALRDWLRGQRDERSGAPERNRRLD 598 Query 598 SDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRR 657 SDAAAVQIMTV+V+KGLQFP+VYLPFAFNRN+++ D++ +HD RCL+IGG+ Sbjct 599 SDAAAVQIMTVWVSKGLQFPVVYLPFAFNRNIQTRDVVTFHDGDIRCLHIGGER-SPDHA 657 Query 658 TVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPD 717 + R EAA D++RLTYVA+TRAQSQVVAWWAP+ DE NGGLSRLLRGR PG VPD Sbjct 658 AAQQQGRREAAGDDVRLTYVAMTRAQSQVVAWWAPSNDEPNGGLSRLLRGRAPGDPVVPD 717 Query 718 RCT-PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTW 776 RC PR+ D A A W AGGP +EESVI A ++E P P +VRHFHRRIDT+W Sbjct 718 RCDPPRIDDPDAMAQLRAWSDAGGPVLEESVIAASVTVELPSPAEDLDVRHFHRRIDTSW 777 Query 777 RRTSYSDLVRG--SEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPSGASF 833 RRTSYS L+R SE V SEP DE E+ V A G G + SP+A LP GA F Sbjct 778 RRTSYSGLIRAAESEQTGVGSEPEVVELDDEAGEVPVPGAGGGGDQMPSPMADLPMGAKF 837 Query 834 GSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGP 893 G+LVHAVLETADP A DLAAELE+ VRRH+ WW VDV A +LA AL+P+HDTPLGP Sbjct 838 GTLVHAVLETADPFATDLAAELESHVRRHSLWWPVDVP----AADLAAALVPLHDTPLGP 893 Query 894 AAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYA 953 A +TLR IG+RDRLRE++FE PLAGGD R PD+SLADVG LLA+HLP DDPL+PYA Sbjct 894 LAPGVTLRDIGLRDRLREMEFEFPLAGGDRRVEVPDISLADVGRLLAAHLPADDPLAPYA 953 Query 954 DRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGD-----TAADYGFERLT 1008 +RL L Q L+GYL GS+D VLR+ G RYLVVDYKTN LGD TAADYG RLT Sbjct 954 ERLTGGTLAAQSLKGYLNGSVDAVLRV-GDRYLVVDYKTNWLGDPARPLTAADYGKARLT 1012 Query 1009 EAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPA 1068 E MLHSDYPLQALLY VVLHRFLRWR Y H+ GVLYLFVRGMCGA TPV GHPA Sbjct 1013 EVMLHSDYPLQALLYCVVLHRFLRWRAPGYRAESHIAGVLYLFVRGMCGADTPVVDGHPA 1072 Query 1069 GVFTWNPPTALVVALSDLLDRG 1090 GVF+W PP AL+ ALSDLLD G Sbjct 1073 GVFSWQPPAALIEALSDLLDAG 1094 >gi|254776976|ref|ZP_05218492.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium subsp. avium ATCC 25291] Length=1100 Score = 1338 bits (3462), Expect = 0.0, Method: Compositional matrix adjust. Identities = 721/1102 (66%), Positives = 834/1102 (76%), Gaps = 22/1102 (1%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M+RF+LLG LP +TTVLEASAGTGKTFALAGLVTRYLA+ AATLD+MLLITF RAAS+ Sbjct 1 MERFDLLGALPAARSTTVLEASAGTGKTFALAGLVTRYLADGAATLDQMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAPPS----GELVEHLLRGSDAERAQKRSRLRDALANFDAA 116 ELRERVR QIV+AV A A PS ELV +LL G++ A +R RLRD LA FDAA Sbjct 61 ELRERVRCQIVDAVAAF---ADPSRAGDNELVAYLLDGTEDRLAARRQRLRDGLAGFDAA 117 Query 117 TIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYA 176 TIATTH+FC VL+SLGVAGD AA V L +SL +LV EIVDD YLA+FG+ DP L Y Sbjct 118 TIATTHQFCQLVLRSLGVAGDTAAGVTLLDSLDELVAEIVDDLYLAHFGQDHDDPVLHYR 177 Query 177 EALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIR 236 EAL LA VV++P AQLRP PEPGS+AAV LRFA +VL EL+ RK RL G++DLL R Sbjct 178 EALRLARDVVNNPSAQLRPLHPEPGSRAAVSLRFANDVLAELDTRKRRLGVLGYDDLLTR 237 Query 237 LATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIY 296 LA AL SPAR RM +RW IV+VDEFQDTDP+QW+V++RAFS S LILIGDPKQAIY Sbjct 238 LADALATEHSPARLRMHQRWPIVMVDEFQDTDPVQWQVIDRAFSGRSTLILIGDPKQAIY 297 Query 297 GFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHH 356 FRGGDI TYL+AA TA + TL NWRSD AL++ LQ VLR A LG IVV AHH Sbjct 298 AFRGGDIVTYLRAAETAGQKKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIVVNDVAAHH 357 Query 357 AGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFA 416 GHRL+ APR PFRLRVV R+TLG G A++PI+ LR+HI DLAAD+ ALLA+GATF Sbjct 358 RGHRLSGAPRNDPFRLRVVSRNTLGRRGIANLPIDELRQHIGADLAADIRALLAAGATFD 417 Query 417 GRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAP 476 G+PV A DIAVIVE H+DA+AC AL +AG+PA+YTG++DVF SQAA+DWLCLLEAFD P Sbjct 418 GKPVRAGDIAVIVERHRDAQACFTALCDAGVPAVYTGNSDVFTSQAAEDWLCLLEAFDQP 477 Query 477 QRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAG 536 R G+VRAAA TMFFGETAE+LAA GDALTDR+A TLREWA HAR RGVAA+F+AAQL G Sbjct 478 HRPGVVRAAAATMFFGETAETLAAGGDALTDRIAQTLREWAGHARERGVAAIFEAAQLLG 537 Query 537 MGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRL 596 MG RVL +GG R +TDLAH+ QLL E AHRE LP LRDWLRRQ +G PE NRRL Sbjct 538 MGNRVLGWQGGARHMTDLAHLTQLLGEVAHREHHNLPALRDWLRRQRDERSGAPERNRRL 597 Query 597 DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHD-DGTRCLYIGGKDGGAQ 655 DSDAAAVQIMTVFV+KGLQ+PIVYLPFAF+RN D++L+HD DGTRCL++GGKD Sbjct 598 DSDAAAVQIMTVFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKD-SPD 656 Query 656 RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQV 715 +TVE L R E A D+ RLTYVALTRAQ+QVVAWW+P + E NGGLSRLLRGRRPG+ V Sbjct 657 FKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEPVV 716 Query 716 PDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDT 774 PDRC P +++DE A A +WEAAGGP +EE+V L E RHFHR IDT Sbjct 717 PDRCEPAKISDEDALARLREWEAAGGPVIEEAVPAPAPPLPGVPVPARLENRHFHRGIDT 776 Query 775 TWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFG 834 WRRTSYS L+R ++ V SEP A G DEV ++A S D+ SP+A LP+GA+FG Sbjct 777 GWRRTSYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVASPMADLPAGATFG 836 Query 835 SLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPA 894 +LVHAVL+TADP APDLAAEL A++R H+ WW V A ++A A++PMHDTPLGP Sbjct 837 TLVHAVLQTADPFAPDLAAELTARIREHSVWWPV----AATPEDMAAAMVPMHDTPLGPL 892 Query 895 AAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYAD 954 A LTLR+IG+ DRL ELDFE+PLAGGD R P+V LAD+ LL +HLP DD L+ YAD Sbjct 893 AGGLTLRRIGLSDRLCELDFELPLAGGDRRSAPPEVRLADLAPLLRAHLPADDVLACYAD 952 Query 955 RLGSAGLGDQPLRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFER 1006 RL LG + LRGYL GSID VLR+P G RYLVVDYKTN LGD TAADY R Sbjct 953 RLTDRSLGAESLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYDRPR 1012 Query 1007 LTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGH 1066 + EAMLHSDYPLQALLY VLHRFLRWR Y P RHLGG+LYLFVRGMCG TPV GH Sbjct 1013 MVEAMLHSDYPLQALLYSAVLHRFLRWRLAGYDPDRHLGGILYLFVRGMCGPDTPVRDGH 1072 Query 1067 PAGVFTWNPPTALVVALSDLLD 1088 P+GVF W PP++L+ ALSDLLD Sbjct 1073 PSGVFDWRPPSSLIAALSDLLD 1094 >gi|118465710|ref|YP_883674.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104] gi|118166997|gb|ABK67894.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104] Length=1100 Score = 1335 bits (3454), Expect = 0.0, Method: Compositional matrix adjust. Identities = 720/1102 (66%), Positives = 833/1102 (76%), Gaps = 22/1102 (1%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M+RF+LLG LP +TTVLEASAGTGKTFALAGLVTRYLA+ AATLD+MLLITF RAAS+ Sbjct 1 MERFDLLGALPAARSTTVLEASAGTGKTFALAGLVTRYLADGAATLDQMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAPPS----GELVEHLLRGSDAERAQKRSRLRDALANFDAA 116 ELRERVR QIV+AV A A PS ELV +LL G++ A +R RLRD LA FDAA Sbjct 61 ELRERVRCQIVDAVAAF---ADPSRAGDNELVAYLLDGTEDRLAARRQRLRDGLAGFDAA 117 Query 117 TIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYA 176 TIATTH+FC VL+SLGVAGD AA V L +SL +LV EIVDD YLA+FG+ DP L Y Sbjct 118 TIATTHQFCQLVLRSLGVAGDTAAGVTLLDSLDELVAEIVDDLYLAHFGQDHDDPVLHYR 177 Query 177 EALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIR 236 EAL LA VV++P AQLRP PEPGS+AAV LRFA +VL EL+ RK RL G++DLL R Sbjct 178 EALRLARDVVNNPSAQLRPLHPEPGSRAAVSLRFANDVLAELDTRKRRLGVLGYDDLLTR 237 Query 237 LATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIY 296 LA AL SPAR RM +RW IV+VDEFQDTDP+QW+V++RAFS S LILIGDPKQAIY Sbjct 238 LADALATEHSPARLRMHQRWPIVMVDEFQDTDPVQWQVIDRAFSGRSTLILIGDPKQAIY 297 Query 297 GFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHH 356 FRGGDI TYL+AA TA + TL NWRSD AL++ LQ VLR A LG IVV AHH Sbjct 298 AFRGGDIVTYLRAAETAGQKKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIVVNDVAAHH 357 Query 357 AGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFA 416 GHRL+ APR PFRLRVV R+TLG G A++PI+ LR+HI DLAAD+ ALLA+GATF Sbjct 358 RGHRLSGAPRNDPFRLRVVSRNTLGRRGIANLPIDELRQHIGADLAADIRALLAAGATFD 417 Query 417 GRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAP 476 G+PV A DIAVIVE H+DA+AC AL +AG+PA+YTG++DVF SQAA+DWLCLLEAFD P Sbjct 418 GKPVRAGDIAVIVERHRDAQACFTALCDAGVPAVYTGNSDVFTSQAAEDWLCLLEAFDQP 477 Query 477 QRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAG 536 R G+VRAAA TMFFGETAE+LAA GDALTDR+A TLREWA HAR RGVAA+F+AAQL G Sbjct 478 HRPGVVRAAAATMFFGETAETLAAGGDALTDRIAQTLREWAGHARERGVAAIFEAAQLLG 537 Query 537 MGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRL 596 MG RVL +GG R +TDLAH+ QLL E AH E LP LRDWLRRQ +G PE NRRL Sbjct 538 MGNRVLGWQGGARHMTDLAHLTQLLGEVAHCEHHNLPALRDWLRRQRDERSGAPERNRRL 597 Query 597 DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHD-DGTRCLYIGGKDGGAQ 655 DSDAAAVQIMTVFV+KGLQ+PIVYLPFAF+RN D++L+HD DGTRCL++GGKD Sbjct 598 DSDAAAVQIMTVFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKD-SPD 656 Query 656 RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQV 715 +TVE L R E A D+ RLTYVALTRAQ+QVVAWW+P + E NGGLSRLLRGRRPG+ V Sbjct 657 FKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEPVV 716 Query 716 PDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDT 774 PDRC P +++DE A A +WEAAGGP +EE+V L E RHFHR IDT Sbjct 717 PDRCEPAKISDEDALARLREWEAAGGPVIEEAVPAPAPPLPGVPVPARLENRHFHRGIDT 776 Query 775 TWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFG 834 WRRTSYS L+R ++ V SEP A G DEV ++A S D+ SP+A LP+GA+FG Sbjct 777 GWRRTSYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVASPMADLPAGATFG 836 Query 835 SLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPA 894 +LVHAVL+TADP APDLAAEL A++R H+ WW V A ++A A++PMHDTPLGP Sbjct 837 TLVHAVLQTADPFAPDLAAELTARIREHSVWWPV----AATPEDMAAAMVPMHDTPLGPL 892 Query 895 AAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYAD 954 A LTLR+IG+ DRL ELDFE+PLAGGD R P+V LAD+ LL +HLP DD L+ YAD Sbjct 893 AGGLTLRRIGLSDRLCELDFELPLAGGDRRSAPPEVRLADLAPLLRAHLPADDVLACYAD 952 Query 955 RLGSAGLGDQPLRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFER 1006 RL LG + LRGYL GSID VLR+P G RYLVVDYKTN LGD TAADY R Sbjct 953 RLTDRSLGAESLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYDRPR 1012 Query 1007 LTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGH 1066 + EAMLHSDYPLQALLY VLHRFLRWR Y P RHLGG+LYLFVRGMCG TPV GH Sbjct 1013 MVEAMLHSDYPLQALLYSAVLHRFLRWRLAGYDPDRHLGGILYLFVRGMCGPDTPVRDGH 1072 Query 1067 PAGVFTWNPPTALVVALSDLLD 1088 P+GVF W PP++L+ ALSDLLD Sbjct 1073 PSGVFDWRPPSSLIAALSDLLD 1094 >gi|183980978|ref|YP_001849269.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M] gi|183174304|gb|ACC39414.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M] Length=1110 Score = 1329 bits (3440), Expect = 0.0, Method: Compositional matrix adjust. Identities = 729/1113 (66%), Positives = 835/1113 (76%), Gaps = 28/1113 (2%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE A LDEMLLITF RAAS+ Sbjct 1 MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQG------DAPPSG--ELVEHLLRGSDAERAQKRSRLRDALAN 112 ELRERVR Q+V+AV DA P+G +L+ HLL G+ AER ++ RLRDALA Sbjct 61 ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120 Query 113 FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172 FDAATIATTH+FC VLKSLGVAGD A V L E L +LVTEIVDD YL +FGR DP Sbjct 121 FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180 Query 173 LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232 LTY +AL +A AVV +P QLRP D PGS+AA+ + FA VLEELE RK R G++D Sbjct 181 LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKRRRGILGYDD 240 Query 233 LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292 LL+RLA AL + DS AR RM++RW +V+VDEFQDTD +QW+V++ AFS LILIGDPK Sbjct 241 LLLRLADALASEDSAARARMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300 Query 293 QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352 QAIY FRGGDI TYL AA TA + TL NWRSD ALV+ LQ VLR A LG IVVR Sbjct 301 QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360 Query 353 DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412 AHH GHRLA AP RLRVV+R TLG G ++PI+ LR HI DLA+D+ ALLASG Sbjct 361 KAHHQGHRLAGAPHNDALRLRVVRRATLGRRGIQNLPIDILRDHIGRDLASDIGALLASG 420 Query 413 ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472 ATFAGR + A DIAVIVE HKDARAC AL +AGI A+YTGDTDVF+S+AA DWL LLEA Sbjct 421 ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSEAADDWLALLEA 480 Query 473 FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAA 532 FD P R G+VRAAA TMFFG+TA LA GDALTDRVA TLREWAD+AR RGVAA+F+AA Sbjct 481 FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592 QL GM RVLS + G+R +TDLAH+ QLL + +HRER LP LRDWLR Q + G E Sbjct 541 QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600 Query 593 NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652 NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++ +++L+HD GTRCL+IGGKD Sbjct 601 NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659 Query 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712 TVE L EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE NGGLSRLLRGRRPG Sbjct 660 SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNGGLSRLLRGRRPGD 719 Query 713 SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLE-KPVPVPGFEVRHFHR 770 S VPDR TP ++TDE AW F QW+AAGGP+VEESVI A ++ +P P R F R Sbjct 720 SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVIAAAPAIAGRPAPSE-LATRRFDR 778 Query 771 RIDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPS 829 ID WRRTSYS L+R +EA V+SEP R DEV E+ + SG + SP+A LPS Sbjct 779 GIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPS 838 Query 830 GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889 GA FGSLVHAVLET+DP A DLAAELE+Q+R + WW V V AQLA AL+PMHDT Sbjct 839 GAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWPVQVPAAQLAA----ALVPMHDT 894 Query 890 PLGPAAAALTLRQIGVRDRLRELDFEMPLAGG---DLRGRSPDVSLADVGELLASHLPGD 946 PLGP A LTLRQIG+ DRLRE+DFE PLAGG D G +PD+ LADVG LL +HL Sbjct 895 PLGPLAGGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHAPDLRLADVGALLRAHLDAS 954 Query 947 DPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----T 998 DPL+PYADRL LG Q LRGYL+GS+D VLR+ PGQRYLVVDYKTN LGD T Sbjct 955 DPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLT 1014 Query 999 AADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGA 1058 AADY RL EAMLHSDYPLQALLY VVLHRFLRWRQ Y PARHLGGVLYLFVRGMCG Sbjct 1015 AADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGP 1074 Query 1059 ATPVTAGHPAGVFTWNPPTALVVALSDLLDRGR 1091 TP+ GHPAGVF+W+PP ALV ALSDLLD GR Sbjct 1075 DTPMLDGHPAGVFSWSPPAALVTALSDLLDAGR 1107 >gi|108797875|ref|YP_638072.1| DNA helicase/exodeoxyribonuclease V subunit beta [Mycobacterium sp. MCS] gi|119866969|ref|YP_936921.1| DNA helicase/exodeoxyribonuclease V subunit beta [Mycobacterium sp. KMS] gi|108768294|gb|ABG07016.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp. MCS] gi|119693058|gb|ABL90131.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp. KMS] Length=1115 Score = 1326 bits (3431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 707/1100 (65%), Positives = 816/1100 (75%), Gaps = 20/1100 (1%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+LLG LP TTTVLEASAGTGKTFALAGLVTRY+AE AATLD+MLL+TF RAAS+ELR Sbjct 15 FDLLGRLPAPLTTTVLEASAGTGKTFALAGLVTRYIAEGAATLDQMLLVTFGRAASQELR 74 Query 64 ERVRGQIVEAVGALQGDAPP-SGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTH 122 ERVR Q+++A+ A + + +LVEHL+ D ER ++ RL+DALA FDAATIATTH Sbjct 75 ERVRCQMLDALVAFEDPSTVGDNQLVEHLIDAPDDERHLRKQRLKDALAGFDAATIATTH 134 Query 123 EFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALA 182 +FC VLKSLGVAGD V+L ESL DL EIVDD YLA+FG+Q DP +T +AL LA Sbjct 135 QFCQLVLKSLGVAGDTDTGVQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTRGQALELA 194 Query 183 LAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALE 242 VV + +LRP +P P ++AA R+ FA V ELERRK RL ++DLL RLA AL Sbjct 195 REVVGNAGTELRPQNPPPETEAAARVEFAKAVCAELERRKRRLGILHYDDLLSRLANALT 254 Query 243 AADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRGGD 302 DSPAR RM RW IV+VDEFQDTDP+QW+VL+RAF+ S LILIGDPKQAIY FRGGD Sbjct 255 GEDSPARTRMHRRWSIVMVDEFQDTDPVQWQVLDRAFTGRSTLILIGDPKQAIYAFRGGD 314 Query 303 IHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLA 362 I TYL AA TA R TLG NWRSD LV+ LQ VLRDA LG +IVVR +A H GHRLA Sbjct 315 IATYLHAASTAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEARHKGHRLA 374 Query 363 SAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVA 422 AP PFRLR+V R T G G +PI+ LR HI DLAAD+ LLASGATF + + A Sbjct 375 GAPHNDPFRLRIVSRDTFGIRGDRTIPIDRLRPHISADLAADIGRLLASGATFCDKKIEA 434 Query 423 ADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLV 482 DIAVIVE HKDARAC +AL+ AGIPA+YTGD+DVF S A DWLCLLEAFD P RSGLV Sbjct 435 KDIAVIVEKHKDARACFDALSVAGIPAVYTGDSDVFNSPAGDDWLCLLEAFDQPHRSGLV 494 Query 483 RAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVL 542 RAAA TMFFG TAE LAA GD LTD +A LREWADHAR RGVAA+F+AA + GMGRRVL Sbjct 495 RAAATTMFFGRTAEELAARGDRLTDEIADRLREWADHARERGVAAIFEAANMTGMGRRVL 554 Query 543 SQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAA 602 S R GER +TDLAH+ Q+LHE AHRE LP LRDWLR Q + +G E NRRLD+DAAA Sbjct 555 SWRDGERHMTDLAHLTQVLHETAHREHFNLPALRDWLRTQREERSGATERNRRLDNDAAA 614 Query 603 VQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGL 662 VQIMTV+V+KGLQ+P+VYLPFAFNRN+++ D +L+HDD TRCL+IGG D VE L Sbjct 615 VQIMTVWVSKGLQYPVVYLPFAFNRNIQTRDCVLFHDDRTRCLHIGGDD-SPDHAQVERL 673 Query 663 NRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT-P 721 R EAA D++RLTYVALTRAQSQVVAWWAP++DE NGGLSRLLRGR PG++ VPDRC P Sbjct 674 GRKEAAGDDIRLTYVALTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVPDRCDPP 733 Query 722 RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSY 781 ++ D A W GGP +E+S I A ++ E +VRHFHR IDT WRRTSY Sbjct 734 KLDDADARTALRAWADLGGPVLEDSEIAAPAAPELREHPTDLDVRHFHRGIDTAWRRTSY 793 Query 782 SDLVR---GSEAVT-VTSEPAAGGRADEVEIAVVAAPGSGAD-LTSPLAALPSGASFGSL 836 S L+R GS AV VTSEP G DE V+ + D + SP+A LP+GA FGSL Sbjct 794 SGLLRAAEGSPAVAGVTSEPEVGELDDEAAEVPVSESHTDVDPVPSPMAELPTGAKFGSL 853 Query 837 VHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAA 896 VHAVLE ADP A DL AELE ++R H WW VDV+ A LA ALLPMHDTPLGP A Sbjct 854 VHAVLEHADPFAADLKAELEHRIREHMVWWPVDVE----AEALADALLPMHDTPLGPLAP 909 Query 897 ALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRL 956 +TLRQIG RDRLRELDFE PLAGGD+RG +P ++LADVG LL +HLP DDP++PY DRL Sbjct 910 NVTLRQIGPRDRLRELDFEFPLAGGDVRGGAPAITLADVGRLLGAHLPADDPMTPYVDRL 969 Query 957 GSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----TAADYGFERLT 1008 LG Q L+GYL GSIDVVLR+ G RY+V D+KTN LG+ TAADY R+ Sbjct 970 TDRALGGQSLKGYLTGSIDVVLRVRDTTGVRYVVADWKTNWLGEREKPLTAADYSRTRMA 1029 Query 1009 EAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPA 1068 EAMLHSDYPLQALLY VVLHRFLRWRQ Y PA+HLGGVLYLFVRGMCGA+TPV G P Sbjct 1030 EAMLHSDYPLQALLYCVVLHRFLRWRQPGYDPAKHLGGVLYLFVRGMCGASTPVVDGDPT 1089 Query 1069 GVFTWNPPTALVVALSDLLD 1088 GVF+W PP +L+VALSDLLD Sbjct 1090 GVFSWRPPASLIVALSDLLD 1109 >gi|118616501|ref|YP_904833.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans Agy99] gi|118568611|gb|ABL03362.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans Agy99] Length=1110 Score = 1324 bits (3427), Expect = 0.0, Method: Compositional matrix adjust. Identities = 728/1113 (66%), Positives = 833/1113 (75%), Gaps = 28/1113 (2%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE A LDEMLLITF RAAS+ Sbjct 1 MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQG------DAPPSG--ELVEHLLRGSDAERAQKRSRLRDALAN 112 ELRERVR Q+V+AV DA P+G +L+ HLL G+ AER ++ RLRDALA Sbjct 61 ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120 Query 113 FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172 FDAATIATTH+FC VLKSLGVAGD A V L E L +LVTEIVDD YL +FGR DP Sbjct 121 FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180 Query 173 LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232 LTY +AL +A AVV +P QLRP D PGS+AA + FA VLE LE RK R G++D Sbjct 181 LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAACVGFAHHVLEGLETRKRRRGILGYDD 240 Query 233 LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292 LL+RLA AL + DS AR RM++RW +V+VDEFQDTD +QW+V++ AFS LILIGDPK Sbjct 241 LLLRLADALASEDSAARARMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300 Query 293 QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352 QAIY FRGGDI TYL AA TA + TL NWRSD ALV+ LQ VLR A LG IVVR Sbjct 301 QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360 Query 353 DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412 AHH GHRLA AP RLRVV+R TLG G ++PI+ LR HI DLA+D+ ALLASG Sbjct 361 KAHHQGHRLAGAPHNDALRLRVVRRATLGRRGIQNLPIDILRDHIGRDLASDIGALLASG 420 Query 413 ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472 ATFAGR + A DIAVIVE HKDARAC AL +AGI A+YTGDTDVF+S+AA DWL LLEA Sbjct 421 ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSEAADDWLALLEA 480 Query 473 FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAA 532 FD P R G+VRAAA TMFFG+TA LA GDALTDRVA TLREWAD+AR RGVAA+F+AA Sbjct 481 FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592 QL GM RVLS + G+R +TDLAH+ QLL + +HRER LP LRDWLR Q + G E Sbjct 541 QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600 Query 593 NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652 NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++ +++L+HD GTRCL+IGGKD Sbjct 601 NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDRGTRCLHIGGKD- 659 Query 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712 TVE L EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE NGGLSRLLRGRRPG Sbjct 660 SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNGGLSRLLRGRRPGD 719 Query 713 SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLE-KPVPVPGFEVRHFHR 770 S VPDR TP ++TDE AW F QW+AAGGP+VEESVI A ++ +P P R F R Sbjct 720 SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVIAAAPAIAGQPAPSE-LATRRFDR 778 Query 771 RIDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPS 829 ID WRRTSYS L+R +EA V+SEP R DEV E+ + SG + SP+A LPS Sbjct 779 DIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPS 838 Query 830 GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889 GA FGSLVHAVLET+DP A DLAAELE+Q+R + WW V V AQLA AL+PMHDT Sbjct 839 GAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWPVQVPAAQLAA----ALVPMHDT 894 Query 890 PLGPAAAALTLRQIGVRDRLRELDFEMPLAGG---DLRGRSPDVSLADVGELLASHLPGD 946 PLGP A LTLRQIG+ DRLRE+DFE PLAGG D G +PD+ LADVG LL +HL Sbjct 895 PLGPLAGGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHAPDLRLADVGALLRAHLDAS 954 Query 947 DPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----T 998 DPL+PY DRL LG Q LRGYL+GS+DVVLR+ PGQRYLVVDYKTN LGD T Sbjct 955 DPLAPYDDRLSGDALGGQTLRGYLSGSVDVVLRIPDGPGQRYLVVDYKTNWLGDPDRPLT 1014 Query 999 AADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGA 1058 AADY RL EAMLHSDYPLQALLY VVLHRFLRWRQ Y PARHLGGVLYLFVRGMCG Sbjct 1015 AADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGP 1074 Query 1059 ATPVTAGHPAGVFTWNPPTALVVALSDLLDRGR 1091 TP+ GHPAGVF+W+PP ALV ALSDLLD GR Sbjct 1075 DTPMLDGHPAGVFSWSPPAALVTALSDLLDAGR 1107 >gi|126433515|ref|YP_001069206.1| exodeoxyribonuclease V subunit beta [Mycobacterium sp. JLS] gi|126233315|gb|ABN96715.1| exodeoxyribonuclease V, beta subunit [Mycobacterium sp. JLS] Length=1115 Score = 1324 bits (3426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 705/1100 (65%), Positives = 815/1100 (75%), Gaps = 20/1100 (1%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+LLGPLP TTTVLEASAGTGKTFALAGLVTRY+AE AATLD+MLL+TF RAAS+ELR Sbjct 15 FDLLGPLPAPLTTTVLEASAGTGKTFALAGLVTRYIAEGAATLDQMLLVTFGRAASQELR 74 Query 64 ERVRGQIVEAVGALQGDAPP-SGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTH 122 ERVR Q+++A+ A + + +LV HL+ D ER ++ RL+DALA FDAATIATTH Sbjct 75 ERVRCQMLDALVAFEDPSTVGDNQLVAHLIDAPDDERHLRKQRLKDALAGFDAATIATTH 134 Query 123 EFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALA 182 +FC VLKSLGVAGD V+L ESL DL EIVDD YLA+FG+Q DP +T +AL LA Sbjct 135 QFCQLVLKSLGVAGDTDTGVQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTRGQALELA 194 Query 183 LAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALE 242 VV + +LRP +P PG+++AVR+ FA V ELERRK RL ++DLL RLA AL Sbjct 195 HEVVGNAGTELRPQNPPPGTESAVRVEFAKAVCAELERRKRRLGILHYDDLLSRLANALT 254 Query 243 AADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRGGD 302 DSPAR RM RW IV+VDEFQDTDP+QW+VL+RAF+ S LILIGDPKQAIY FRGGD Sbjct 255 GEDSPARTRMHRRWSIVMVDEFQDTDPVQWQVLDRAFTGRSTLILIGDPKQAIYAFRGGD 314 Query 303 IHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLA 362 I TYL AA TA R TLG NWRSD LV+ LQ VLRDA LG +IVVR +A H GHRLA Sbjct 315 IATYLHAASTAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEARHKGHRLA 374 Query 363 SAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVA 422 AP PFRLR+V R T G G + I+ LR HI DLAAD+ LLASGATF + + A Sbjct 375 GAPHNDPFRLRIVSRDTFGIRGDRTIAIDRLRAHISADLAADIGRLLASGATFCDKKIEA 434 Query 423 ADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLV 482 DIAVIVE HKDARAC +AL+ AGIPA+YTGD+DVF S A DWLCLLEAFD P R GLV Sbjct 435 KDIAVIVEKHKDARACFDALSVAGIPAVYTGDSDVFNSPAGDDWLCLLEAFDQPHRPGLV 494 Query 483 RAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVL 542 RAAA TMFFG TAE LAA GD LTD +A LREWADHAR RGVAA+F+AA + GMGRRVL Sbjct 495 RAAATTMFFGRTAEELAARGDRLTDEIADRLREWADHARERGVAAIFEAANMTGMGRRVL 554 Query 543 SQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAA 602 S R GER +TDLAH+ Q+LHE AHRE LP LRDWLR Q + +G E NRRLD+DAAA Sbjct 555 SWRDGERHMTDLAHLTQVLHETAHREHFNLPALRDWLRTQREERSGATERNRRLDNDAAA 614 Query 603 VQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGL 662 VQIMTV+V+KGLQ+P+VYLPFAFNRN+++ D +L+HDD TRCL+IGG D VE L Sbjct 615 VQIMTVWVSKGLQYPVVYLPFAFNRNIQTRDCVLFHDDRTRCLHIGGDD-SPDHAQVERL 673 Query 663 NRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT-P 721 R EAA D++RLTYVALTRAQSQVVAWWAP++DE NGGLSRLLRGR PG++ VPDRC P Sbjct 674 GRKEAAGDDVRLTYVALTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVPDRCDPP 733 Query 722 RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSY 781 +V D A W GGP +E+S I A ++ E +VRHFHR IDT WRRTSY Sbjct 734 KVDDADARTALRAWADLGGPVLEDSEIAAPAAPEPREHPTDLDVRHFHRGIDTAWRRTSY 793 Query 782 SDLVR---GSEAVT-VTSEPAAGGRADEVEIAVVAAPGSGAD-LTSPLAALPSGASFGSL 836 S L+R GS AV VTSEP G DE V+ + D + SP+A LP+GA FGSL Sbjct 794 SGLLRAAEGSPAVAGVTSEPEVGELDDEAAEVPVSESHTDVDPVPSPMAELPTGAKFGSL 853 Query 837 VHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAA 896 VHAVLE ADP A DL AELE ++R H WW VDV+ A LA ALLPMHDTPLGP Sbjct 854 VHAVLEHADPFAADLKAELEHRIREHMVWWPVDVE----AEALADALLPMHDTPLGPLVP 909 Query 897 ALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRL 956 +TLRQIG+RDRLRELDFE PLAGGD+RG +P ++LADVG LL +HL DDP++PY DRL Sbjct 910 NVTLRQIGLRDRLRELDFEFPLAGGDVRGGAPAITLADVGHLLGAHLSADDPMAPYVDRL 969 Query 957 GSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----TAADYGFERLT 1008 LG Q L+GYL GSIDVVLR+ G RY+V D+KTN LG+ TAADY R+ Sbjct 970 TDRALGGQSLKGYLTGSIDVVLRVRDTTGVRYVVADWKTNWLGEPEKPLTAADYSRTRMA 1029 Query 1009 EAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPA 1068 EAMLHSDYPLQALLY VVLHRFLRWRQ Y PA+HLGGVLYLFVRGMCGA+TPV G P Sbjct 1030 EAMLHSDYPLQALLYCVVLHRFLRWRQPGYDPAKHLGGVLYLFVRGMCGASTPVIDGDPT 1089 Query 1069 GVFTWNPPTALVVALSDLLD 1088 GVF+W PP +L+VALSDLLD Sbjct 1090 GVFSWRPPASLIVALSDLLD 1109 >gi|118467867|ref|YP_885717.1| exodeoxyribonuclease V subunit beta [Mycobacterium smegmatis str. MC2 155] gi|5678922|gb|AAD46808.1|AF157643_2 RecB [Mycobacterium smegmatis] gi|118169154|gb|ABK70050.1| exodeoxyribonuclease V, beta subunit [Mycobacterium smegmatis str. MC2 155] Length=1083 Score = 1313 bits (3397), Expect = 0.0, Method: Compositional matrix adjust. Identities = 721/1097 (66%), Positives = 827/1097 (76%), Gaps = 27/1097 (2%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M F+LLGPLP TTTVLEASAGTGKTFALAGLVTR++AE ATLD+MLLITF RAAS+ Sbjct 1 MKVFDLLGPLPAPNTTTVLEASAGTGKTFALAGLVTRFVAEGVATLDQMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVR QIV A+ AL + +L E+L++ ++ +R RLRDALA FDAATIAT Sbjct 61 ELRERVRAQIVAALVALDDPSRACNDLEEYLVK---TDQQARRRRLRDALAGFDAATIAT 117 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH+FC VLKSLGVAGD+ A V L ESL DLV+EIVDD YLA+FG Q+ DPEL+Y EAL Sbjct 118 THQFCQIVLKSLGVAGDSDAGVTLVESLDDLVSEIVDDLYLAHFGGQKDDPELSYPEALK 177 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LA VV +P QLRP DP+P S AAVRL+FA +VL ELE RK R G++DLL RLA A Sbjct 178 LARVVVGNPATQLRPRDPDPDSPAAVRLKFARDVLAELEIRKRRRGVLGYDDLLTRLADA 237 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LE DSPAR RM++RW IV+VDEFQDTDP+QW+V+ERAFS S L+LIGDPKQAIY FRG Sbjct 238 LEPEDSPARVRMQQRWPIVMVDEFQDTDPVQWQVIERAFSGRSTLVLIGDPKQAIYAFRG 297 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDI TYL+AA TA + TLG NWRSDRALV+ LQ VLR A LG DIVV A H GHR Sbjct 298 GDIATYLRAAATAGDKQTLGTNWRSDRALVDRLQAVLRGAQLGGPDIVVHDVQARHQGHR 357 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 L APR PFRLRVV R T +PI+ LRRHI DLAAD++ALL SGAT+ +PV Sbjct 358 LVGAPRNDPFRLRVVSRKP---GNTRVIPIDQLRRHIGRDLAADISALLNSGATWCDQPV 414 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 A DIAVI E HKDARAC AL AGIPA+YTGD+DVF S+AA+DWL LLEAFD P R G Sbjct 415 QAKDIAVITETHKDARACHAALLAAGIPAVYTGDSDVFTSEAAEDWLYLLEAFDQPHRPG 474 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAA TMFFGETAESLAA GDALTDRVA TLREWA HAR RGVAA+F+AAQLAGMG+R Sbjct 475 LVRAAAATMFFGETAESLAAGGDALTDRVADTLREWAGHARERGVAAIFEAAQLAGMGKR 534 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLS +GGER +TDLAH+ QLL + AHRE GL LRDWLR Q G E NRRLDSDA Sbjct 535 VLSWQGGERLMTDLAHMTQLLQDTAHREGFGLAALRDWLRTQRSERGGESERNRRLDSDA 594 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTV+V+KGLQFP+VYLPFAFNR V D++L+HDDG RCL++GG D R Sbjct 595 AAVQIMTVWVSKGLQFPVVYLPFAFNRYVPEPDLVLFHDDGQRCLHVGGADPAVARAGRA 654 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 EAA D+ RLTYVALTRAQSQVVAWWAP++DE NGGLSRL+RGR PG++ VPD+C+ Sbjct 655 -----EAAGDDSRLTYVALTRAQSQVVAWWAPSYDEPNGGLSRLMRGRAPGEAIVPDKCS 709 Query 721 -PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVP-GFEVRHFHRRIDTTWRR 778 P+++DE A WEAAGGP +EESVIGA S + P P P R F R ID W+R Sbjct 710 PPKISDEDALERLRAWEAAGGPVIEESVIGAVSPV-PPEPAPEDLAARKFFRAIDMAWKR 768 Query 779 TSYSDLVRGSE--AVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSL 836 TSYS L+R +E V V+SEP R DE + V AP GAD+ SP+A LP+GA+FGSL Sbjct 769 TSYSGLLRAAETAGVGVSSEPEVTERDDEFDDIPVVAPAEGADVPSPMAHLPTGAAFGSL 828 Query 837 VHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAA 896 VHAVLETADP A DL AEL + H+ W V+V+ A ELA AL+PMHDTPLGP A Sbjct 829 VHAVLETADPFAEDLTAELATHIDAHSQHWPVEVETA----ELAAALVPMHDTPLGPLAP 884 Query 897 ALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRL 956 LTLRQIG+RDRL ELDFE P+AGGDLRG L+DVGELL +LP DDPL+ YA+RL Sbjct 885 GLTLRQIGLRDRLCELDFEFPMAGGDLRG-GRFARLSDVGELLREYLPADDPLAVYAERL 943 Query 957 GSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGD-----TAADYGFERLTEAM 1011 + LG QPLRGYL+GS+D VLR+ G+++++VDYKTN LG TAADYG R+ EAM Sbjct 944 STGILGVQPLRGYLSGSVDAVLRV-GEKFVIVDYKTNWLGTGDGTLTAADYGRRRMVEAM 1002 Query 1012 LHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVF 1071 LHSDYPLQALLY VVLHR+L WR Y PA HLGGVLYLFVRGMCGA TPV GHPAGVF Sbjct 1003 LHSDYPLQALLYAVVLHRYLGWRLSGYDPATHLGGVLYLFVRGMCGAGTPVVDGHPAGVF 1062 Query 1072 TWNPPTALVVALSDLLD 1088 +W PP LVVALS LLD Sbjct 1063 SWEPPADLVVALSKLLD 1079 >gi|289568567|ref|ZP_06448794.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17] gi|289542321|gb|EFD45969.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17] Length=906 Score = 1283 bits (3319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 668/668 (100%), Positives = 668/668 (100%), Gaps = 0/668 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA Sbjct 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE Sbjct 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 Query 661 GLNRVEAA 668 GLNRVEAA Sbjct 661 GLNRVEAA 668 >gi|145225706|ref|YP_001136384.1| exodeoxyribonuclease V subunit beta [Mycobacterium gilvum PYR-GCK] gi|145218192|gb|ABP47596.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium gilvum PYR-GCK] Length=1109 Score = 1277 bits (3305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 707/1113 (64%), Positives = 811/1113 (73%), Gaps = 31/1113 (2%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M+ F+LLG LP TTTVLEASAGTGKTFALAGLVTRY+AE ATLD MLLITF RAAS+ Sbjct 1 MEPFDLLGALPEPRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDRMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAP-PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIA 119 ELRERVR QIV+A+ A A E+V HL+ G E +R RLRDALA FDAATIA Sbjct 61 ELRERVRSQIVDALRAFDDPAAIGDNEVVRHLVTGDAEECDARRRRLRDALAGFDAATIA 120 Query 120 TTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEAL 179 TTH+FC VL+SLGVAGD + VEL ESL DLV EIVDD YLA+FG+ +P LT+ AL Sbjct 121 TTHQFCQLVLRSLGVAGDTDSGVELVESLDDLVAEIVDDLYLAHFGQDRDEPLLTHESAL 180 Query 180 ALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLAT 239 LA AVV + +LRP DP PGS AAVR+ FA V ELE RK +L ++DLL RLA Sbjct 181 RLAHAVVGNAHTELRPRDPAPGSDAAVRVEFAKAVCAELETRKRKLGILHYDDLLSRLAD 240 Query 240 ALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFR 299 ALEA DSPAR RM+ RW IV+VDEFQDTDP+QW+V++RAF H+ LILIGDPKQAIY FR Sbjct 241 ALEAPDSPARARMQRRWSIVMVDEFQDTDPVQWQVIDRAFRGHATLILIGDPKQAIYAFR 300 Query 300 GGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGH 359 GGDI TYL AA TA + TLG N+RSD LVE LQ V+RDA LG IVVR DAHH H Sbjct 301 GGDIVTYLHAAATAGVQRTLGTNYRSDAPLVEGLQAVMRDAQLGDPRIVVRRVDAHHREH 360 Query 360 RLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRP 419 RL AP PFRLRV R +PI+ LR HIP D+AAD+AALL SGAT G Sbjct 361 RLQGAPHNEPFRLRVCTRDQFRVRPDRMIPIDVLRNHIPKDMAADIAALLNSGATHCGEK 420 Query 420 VVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRS 479 + IAVIVE H+D AC ALA+AGIPA+YTGD+DVF+S AA DW+CLLEAFD P RS Sbjct 421 LAPGHIAVIVESHRDGHACFAALADAGIPAVYTGDSDVFSSPAADDWMCLLEAFDQPHRS 480 Query 480 GLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGR 539 GLVRAAA TMFFGETAE+LA +GD+LTDR+A TLR+WAD AR RGVAAVF+AAQL GMG Sbjct 481 GLVRAAATTMFFGETAEALALQGDSLTDRIAETLRQWADFARERGVAAVFEAAQLRGMGA 540 Query 540 RVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLR--RQAKAGA-GPPEHNRRL 596 RVL GER +TDLAH+ QLLH+ AHRE+ LP LRDWLR R + G G E NRRL Sbjct 541 RVLRWVDGERHMTDLAHLTQLLHDTAHREQYSLPALRDWLRAQRDDRGGLRGTVERNRRL 600 Query 597 DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGT-------RCLYIGG 649 DSDAAAVQIMTV+V+KGLQFP+VYLPFAFNRNV+ D++++H+ T RCL+IGG Sbjct 601 DSDAAAVQIMTVWVSKGLQFPVVYLPFAFNRNVQPRDVVVFHEPATSDGAGDIRCLHIGG 660 Query 650 KDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRR 709 + V R+EAA D++RLTYVA+TRAQSQVVAWWAP+ DE+NGGLSRLLRGR Sbjct 661 E-SSPDFAAVAQQARLEAAGDDVRLTYVAMTRAQSQVVAWWAPSRDELNGGLSRLLRGRA 719 Query 710 PGQSQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHF 768 PG VPDRC P R+ D +A A W GGP +EES+I R +E P P VRHF Sbjct 720 PGDPVVPDRCDPARIDDAEAMARLRAWADEGGPVLEESIIAERVEVELPAPPDTLAVRHF 779 Query 769 HRRIDTTWRRTSYSDLVRGSEAVT-VTSEPAAGGRADEVEIAVVAAPGS-----GADLTS 822 HRRID WRRTSYS L+R +E + V SEP DEV A + AP + D+ S Sbjct 780 HRRIDPLWRRTSYSGLIRAAEQESGVGSEPEVVELDDEV--AELRAPDTEPATPDVDMAS 837 Query 823 PLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARA 882 P+A LP GA FG+LVHAVLETADP A DLAAELEA V H+ WW VDV A ELA A Sbjct 838 PMAGLPMGAKFGTLVHAVLETADPFAVDLAAELEAAVVEHSLWWPVDVPPA----ELAAA 893 Query 883 LLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASH 942 L+P+HDTPLGP A +TLR IG+RDRLRE++FE PLAGGD R +PD++LADVG LL +H Sbjct 894 LVPLHDTPLGPLAPGVTLRDIGLRDRLREMEFEFPLAGGDRRDDTPDITLADVGRLLRAH 953 Query 943 LPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGD----- 997 LP DDPL+PYA RL + L QPL+GYL GS+D VLR+ G RYLVVDYKTN LGD Sbjct 954 LPADDPLAPYAARLTTGALAGQPLKGYLNGSLDAVLRVDG-RYLVVDYKTNWLGDPAGEL 1012 Query 998 TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCG 1057 TAADY RL EAMLHSDYPLQALLY VVLHRFLRWRQ Y+ RH+ GVLYLFVRGMCG Sbjct 1013 TAADYAPARLAEAMLHSDYPLQALLYCVVLHRFLRWRQPGYSARRHIAGVLYLFVRGMCG 1072 Query 1058 AATPVTAGHPAGVFTWNPPTALVVALSDLLDRG 1090 TPV GHPAGVF+W PP AL+ LSDLLD G Sbjct 1073 PDTPVLDGHPAGVFSWQPPAALIEELSDLLDAG 1105 >gi|315446057|ref|YP_004078936.1| DNA helicase/exodeoxyribonuclease V subunit beta [Mycobacterium sp. Spyr1] gi|315264360|gb|ADU01102.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp. Spyr1] Length=1109 Score = 1275 bits (3300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 707/1113 (64%), Positives = 811/1113 (73%), Gaps = 31/1113 (2%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M+ F+LLG LP TTTVLEASAGTGKTFALAGLVTRY+AE ATLD MLLITF RAAS+ Sbjct 1 MEPFDLLGALPEPRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDRMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAP-PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIA 119 ELRERVR QI++A+ A A E+V HL+ G E +R RLRDALA FDAATIA Sbjct 61 ELRERVRSQILDALRAFDDPAAIGDNEVVRHLVTGDAEECDARRRRLRDALAGFDAATIA 120 Query 120 TTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEAL 179 TTH+FC VL+SLGVAGD + VEL ESL DLV EIVDD YLA+FG+ +P LT+ AL Sbjct 121 TTHQFCQLVLRSLGVAGDTDSGVELVESLDDLVAEIVDDLYLAHFGQDRDEPLLTHESAL 180 Query 180 ALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLAT 239 LA AVV +LRP DP PGS AAVR+ FA V ELE RK +L ++DLL RLA Sbjct 181 RLAHAVVGYAHTELRPRDPAPGSDAAVRVEFAKAVCAELETRKRKLGILHYDDLLSRLAD 240 Query 240 ALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFR 299 ALEA DSPAR RM+ RW IV+VDEFQDTDP+QW+V++RAF H+ LILIGDPKQAIY FR Sbjct 241 ALEAPDSPARARMQRRWSIVMVDEFQDTDPVQWQVIDRAFRGHATLILIGDPKQAIYAFR 300 Query 300 GGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGH 359 GGDI TYL AA TA + TLG N+RSD LVE LQ V+RDA LG IVVR DAHH H Sbjct 301 GGDIVTYLHAAATAGVQRTLGTNYRSDAPLVEGLQAVMRDAQLGDPRIVVRRVDAHHREH 360 Query 360 RLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRP 419 RL AP PFRLRV R +PI+ LR HIP D+AAD+AALL SGAT G Sbjct 361 RLQGAPHNEPFRLRVCTRDQFRVRTDRMIPIDVLRNHIPKDMAADIAALLNSGATHCGEK 420 Query 420 VVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRS 479 + DIAVIVE H+D AC ALA+AGIPA+YTGD+DVF+S AA DW+CLLEAFD P RS Sbjct 421 LAPGDIAVIVESHRDGHACFAALADAGIPAVYTGDSDVFSSPAADDWMCLLEAFDQPHRS 480 Query 480 GLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGR 539 GLVRAAA TMFFGETAE+LA +GD+LTDR+A TLR+WAD AR RGV AVF+AAQL GMG Sbjct 481 GLVRAAATTMFFGETAEALALQGDSLTDRIAETLRQWADFARERGVTAVFEAAQLRGMGA 540 Query 540 RVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLR--RQAKAGA-GPPEHNRRL 596 RVL GER +TDLAH+ QLLH+ AHRE+ LP LRDWLR R + G G E NRRL Sbjct 541 RVLRWVDGERHMTDLAHLTQLLHDTAHREQYSLPALRDWLRAQRDDRGGLRGTVERNRRL 600 Query 597 DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHD----DG---TRCLYIGG 649 DSDAAAVQIMTV+V+KGLQFP+VYLPFAFNRNV+ D++++H+ DG RCL+IGG Sbjct 601 DSDAAAVQIMTVWVSKGLQFPVVYLPFAFNRNVQPRDVVVFHEPVTSDGAADIRCLHIGG 660 Query 650 KDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRR 709 + V R+EAA D++RLTYVA+TRAQSQVVAWWAP+ DE+NGGLSRLLRGR Sbjct 661 E-SSPDFAAVAQQARLEAAGDDVRLTYVAMTRAQSQVVAWWAPSRDELNGGLSRLLRGRA 719 Query 710 PGQSQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHF 768 PG VPDRC P R+ D +A A W+ GGP +EES+I R +E P P VRHF Sbjct 720 PGDPVVPDRCDPARIDDAEAMARLRAWDDEGGPVLEESIIAERVEVELPAPPDTLAVRHF 779 Query 769 HRRIDTTWRRTSYSDLVRGSEAVT-VTSEPAAGGRADEVEIAVVAAPGS-----GADLTS 822 HRRID WRRTSYS L+R +E + V SEP DEV A + P + D+ S Sbjct 780 HRRIDPLWRRTSYSGLIRAAEQESGVGSEPEVVELDDEV--AELRGPDTEPATPDVDMAS 837 Query 823 PLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARA 882 P+A LP GA FG+LVHAVLETADP A DLAAELEA V H+ WW VDV A ELA A Sbjct 838 PMAGLPMGAKFGTLVHAVLETADPFAVDLAAELEAAVVEHSLWWPVDVPPA----ELAAA 893 Query 883 LLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASH 942 L+PMHDTPLGP A +TLR IG+RDRLRE++FE PLAGGD R +PD++LADVG LL +H Sbjct 894 LVPMHDTPLGPLAPGVTLRDIGLRDRLREMEFEFPLAGGDRRDDTPDITLADVGRLLRAH 953 Query 943 LPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGD----- 997 LP DDPL+PYA RL + L QPL+GYL GS+D VLR+ G RYLVVDYKTN LGD Sbjct 954 LPADDPLAPYAARLTTGALAGQPLKGYLNGSLDAVLRVDG-RYLVVDYKTNWLGDPAGEL 1012 Query 998 TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCG 1057 TAADY RL EAMLHSDYPLQALLY VVLHRFLRWRQ Y+ RH+ GVLYLFVRGMCG Sbjct 1013 TAADYAPARLAEAMLHSDYPLQALLYCVVLHRFLRWRQPGYSARRHIAGVLYLFVRGMCG 1072 Query 1058 AATPVTAGHPAGVFTWNPPTALVVALSDLLDRG 1090 TPV GHPAGVF+W PP AL+ LSDLLD G Sbjct 1073 PDTPVLDGHPAGVFSWQPPAALIEELSDLLDAG 1105 >gi|169627503|ref|YP_001701152.1| exodeoxyribonuclease V subunit beta [Mycobacterium abscessus ATCC 19977] gi|169239470|emb|CAM60498.1| Exodeoxyribonuclease V, beta subunit (RecB) [Mycobacterium abscessus] Length=1081 Score = 1275 bits (3299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 695/1094 (64%), Positives = 797/1094 (73%), Gaps = 21/1094 (1%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 M RF+LLGPLP + +TTVLEASAGTGKTFALAGLVTRY+AE ATLD+MLLITF RAAS+ Sbjct 1 MKRFDLLGPLPADRSTTVLEASAGTGKTFALAGLVTRYVAEGVATLDQMLLITFGRAASQ 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELR+RVRGQIV+A+ A + +L ++L+ AE+ ++ RLRDALA FDAATIAT Sbjct 61 ELRDRVRGQIVDALRAFADPSTARTDLTQYLI---SAEQDTRQRRLRDALAGFDAATIAT 117 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH+FC VLKSLGVAGD+ + V L E+L +LV EIV+DRYL +FG+ P L+Y AL Sbjct 118 THQFCHIVLKSLGVAGDSDSGVTLVENLDELVCEIVNDRYLTHFGKDRDAPPLSYPAALR 177 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LA VV +P QLRP PE S A L FA +VLE+LE RK R GF+DLL RLA A Sbjct 178 LAREVVRNPATQLRPLQPEADSYAFAALGFARDVLEQLEIRKRRRGILGFDDLLTRLADA 237 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 L A DSPAR RM +RW IV+VDEFQDTDP+QW+VLERAFS HS L+LIGDPKQAIY FRG Sbjct 238 LNATDSPARVRMHQRWPIVMVDEFQDTDPVQWQVLERAFSGHSTLVLIGDPKQAIYAFRG 297 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDI TYL+AA TA + TLG NWRSD ALV+ LQ VLR A LG DIVV AHH GHR Sbjct 298 GDIETYLRAAATAGDKQTLGTNWRSDAALVDRLQVVLRGAQLGGPDIVVHDVQAHHQGHR 357 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LA AP PFRLRVV R+ DG +PI LRR I DLAAD+ ALL+SGATF GRPV Sbjct 358 LAGAPHNDPFRLRVVSRNR---DGIKVIPIADLRRSIGRDLAADIGALLSSGATFDGRPV 414 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 A DIAVIVE HKDARAC AL EAGIPA+YTGDTDVF+S AA+DWL LLEAFD P R G Sbjct 415 RARDIAVIVEAHKDARACHTALTEAGIPAVYTGDTDVFSSDAAQDWLYLLEAFDQPHRPG 474 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAA T+FFGETAE+LA G++LTD +AGTLR WA AR RGVAAVF+AAQLAGMG+R Sbjct 475 LVRAAAATVFFGETAETLAVGGESLTDEIAGTLRTWAARARERGVAAVFEAAQLAGMGKR 534 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VLS RGGER +TDLAH+ +LL E AHR G LRDWLR Q G E NRRLDSDA Sbjct 535 VLSWRGGERMMTDLAHLTELLQETAHRNGFGPAALRDWLRTQCSEGGAEAERNRRLDSDA 594 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQRRTVE 660 AAVQIMTV+V+KGLQFP+VYLPF+FNR V + +LYH+DG RCL+IGG++ + Sbjct 595 AAVQIMTVWVSKGLQFPVVYLPFSFNRYVPEREYVLYHEDGLRCLHIGGRE-DPDYSMAD 653 Query 661 GLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCT 720 R EAA D RL YVALTRAQSQVVAWWAP+FDE NGGLSRLLRGR PG VPD+C+ Sbjct 654 LAGRTEAARDASRLAYVALTRAQSQVVAWWAPSFDEPNGGLSRLLRGRAPGNPSVPDKCS 713 Query 721 P-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRT 779 P +++D WEA GGP VE++++ P VR F R IDT WRRT Sbjct 714 PAKISDADVLKRLRAWEAQGGPVVEDALVTGFVPAATSSPSDNLAVRVFDRPIDTAWRRT 773 Query 780 SYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPSGASFGSLVH 838 SYS L+R +E V+SEP DEV EI + + P +GAD+ SP+A LP+GA+FGSLVH Sbjct 774 SYSGLLRAAEESGVSSEPEIAELDDEVDEIPLRSMP-AGADVPSPMAQLPAGAAFGSLVH 832 Query 839 AVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAAL 898 AVLET DP APDL AEL+ Q+ RH W V++ A+LA L MHDTPLGP + Sbjct 833 AVLETTDPLAPDLVAELQTQIIRHRERWPVEIPAAELAAALEP----MHDTPLGPLLPGV 888 Query 899 TLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGS 958 TLRQIG+RDRL ELDFE PLAGGD S LADVG LL HL DDPL YA RL Sbjct 889 TLRQIGLRDRLCELDFEFPLAGGDAAADS-FARLADVGMLLREHLAADDPLGVYASRLTG 947 Query 959 AGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGD-----TAADYGFERLTEAMLH 1013 GLG Q LRGYL+GS+D VLR+ G RY+VVDYKTN LG TAADY R+ EAMLH Sbjct 948 PGLGGQSLRGYLSGSVDAVLRV-GSRYVVVDYKTNWLGTGDAPLTAADYSRPRMVEAMLH 1006 Query 1014 SDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTW 1073 SDYPLQALLY VVLHRFL WR Y P HLGG +YLFVRGMCGA TPV GHPAGVF+W Sbjct 1007 SDYPLQALLYSVVLHRFLSWRLPGYRPEEHLGGAVYLFVRGMCGATTPVVEGHPAGVFSW 1066 Query 1074 NPPTALVVALSDLL 1087 PP+ALVVALS+LL Sbjct 1067 QPPSALVVALSELL 1080 >gi|284031863|ref|YP_003381794.1| exodeoxyribonuclease V subunit beta [Kribbella flavida DSM 17836] gi|283811156|gb|ADB32995.1| exodeoxyribonuclease V, beta subunit [Kribbella flavida DSM 17836] Length=1098 Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 675/1103 (62%), Positives = 787/1103 (72%), Gaps = 24/1103 (2%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MD F+LLGPLP TTVLEASAGTGKT+ALAGLVTRY+AE AA LDEMLLITF RAAS+ Sbjct 1 MDAFDLLGPLPT--GTTVLEASAGTGKTYALAGLVTRYVAEGAARLDEMLLITFGRAASQ 58 Query 61 ELRERVRGQIVEAVGALQGDAPPSGE--LVEHLLRGSDAERAQKRSRLRDALANFDAATI 118 ELRERVR Q++EA AL P + L+ HL+ GS AE A + RLRDALA FDAATI Sbjct 59 ELRERVRCQLLEAEQALAAPEPWRNDPGLLGHLVDGSAAELAVRHGRLRDALATFDAATI 118 Query 119 ATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEA 178 ATTH+FC VL+SLGVAGD A V L E LTDLV E+VDD YL F P +T A A Sbjct 119 ATTHQFCQLVLRSLGVAGDTDAGVTLVEDLTDLVAEVVDDLYLNLFAGSAEPPPITRATA 178 Query 179 LALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLA 238 L LAL VV +P +L P S VR+ FA VL E+ERRK RL G++DLL RLA Sbjct 179 LELALKVVGNPHTRLVPEKYAEASPEGVRVEFAKAVLAEVERRKRRLGVLGYDDLLTRLA 238 Query 239 TALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 ALE +PAR RM+ RW +V+VDEFQDTDP+QW+V++ AF+ HS L+LIGDPKQAIY F Sbjct 239 VALEDPTAPARRRMQRRWSVVMVDEFQDTDPVQWKVIDAAFNGHSTLVLIGDPKQAIYAF 298 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RGGDI TYL AA TA R TLG NWRSD+ LV+ LQ VL A LGH DIVV DAHH G Sbjct 299 RGGDIATYLTAAATAGQRRTLGTNWRSDQPLVDCLQVVLGGARLGHEDIVVHPVDAHHQG 358 Query 359 HRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGR 418 RLA AP APFRLRV R G ++P++ LR HI DLAAD+ LLA+GAT+AGR Sbjct 359 SRLAGAPCDAPFRLRVALRDQFGSAARKNIPMDELRDHITRDLAADIGQLLAAGATYAGR 418 Query 419 PVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQR 478 P+ A DIAVIVE HKDARACR ALA+AGIPA+Y+GD D+F+SQAA+DWLCLLEAF+ P R Sbjct 419 PLRAGDIAVIVEAHKDARACREALAQAGIPAVYSGDLDIFSSQAAQDWLCLLEAFEQPHR 478 Query 479 SGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMG 538 SGLVRAAA TMFFGETA SL A G+ LTDR+ TLR WADH R +GVAAVF+AAQL GM Sbjct 479 SGLVRAAATTMFFGETAASLHAGGEELTDRIGQTLRAWADHLRAKGVAAVFEAAQLKGMA 538 Query 539 RRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDS 598 RVL+ RGGERDLTDLAH+A+LLHE AHRE GLP L DWLR++ E RRLDS Sbjct 539 DRVLAWRGGERDLTDLAHLAELLHETAHREGFGLPALLDWLRQECTGKGRTTERTRRLDS 598 Query 599 DAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVR-SDDILLYHDDGTRCLYIGGKDGGAQRR 657 D AAVQIMTV+V+KGLQ+P+VYLPF FNR++ D++LL+H+DG R L IGG+ A+ R Sbjct 599 DVAAVQIMTVWVSKGLQYPVVYLPFGFNRHIYDEDELLLFHEDGVRSLDIGGRK-RAEYR 657 Query 658 TVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPD 717 E R E A D++RLTYVALTRAQSQVVAWWAP++DEVNGG+SRLLRGR+ G VPD Sbjct 658 ANEKRWRAEVAGDDIRLTYVALTRAQSQVVAWWAPSWDEVNGGISRLLRGRKQGDPVVPD 717 Query 718 RCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWR 777 + +DE+ +W+ AGGP VE+S I G V F R +D TWR Sbjct 718 QLDRPSSDEEVLVWLRRWQQAGGPVVEQSAIAEHVEPVAEQLPGGLRVATFSREVDLTWR 777 Query 778 RTSYSDLVRGSE--AVTVTSEPAAGGRADE-VEIAVVAAPGSGADLTSPLAALPSGASFG 834 RTSYS LVR +E + V SE ADE V+ + A + L SP+ P GA+FG Sbjct 778 RTSYSGLVRDAEQQSAGVASEHEESQLADESVDPVPMPAAAAPDALPSPMEGFPVGATFG 837 Query 835 SLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPE-LARALLPMHDTPLGP 893 SLVHAVLE ADP A DL AEL ++R P+W VD P+ LA A+LPMH TPLGP Sbjct 838 SLVHAVLEEADPHAADLHAELAGRIREQLPFWRVDA-----TPDALATAMLPMHATPLGP 892 Query 894 AAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYA 953 LTLR +G DRLRELDFE+PLAGGD R +V LA++ LL +HLP DDPL YA Sbjct 893 LVPGLTLRDLGRGDRLRELDFEIPLAGGD-RAAPREVRLAELAPLLRAHLPADDPLLAYA 951 Query 954 DRLGSAGLGDQPLRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFE 1005 DRL LG Q LRGYL GSIDVVLR+P R++VVDYKTN LGD T+A YG + Sbjct 952 DRLEQPLLGGQSLRGYLTGSIDVVLRVPDGGSHRFVVVDYKTNRLGDPDQPATSAQYGRD 1011 Query 1006 RLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAG 1065 +L AMLHSDYPLQALLY VVLHR+LRWR YAP HLGGV+YL++RGMCG TPV G Sbjct 1012 QLGAAMLHSDYPLQALLYSVVLHRYLRWRLPGYAPETHLGGVVYLYLRGMCGPETPVVDG 1071 Query 1066 HPAGVFTWNPPTALVVALSDLLD 1088 HPAGVF+W+ P+ALVVALSDLLD Sbjct 1072 HPAGVFSWSLPSALVVALSDLLD 1094 >gi|289760753|ref|ZP_06520131.1| exodeoxyribonuclease V beta chain [Mycobacterium tuberculosis GM 1503] gi|289708259|gb|EFD72275.1| exodeoxyribonuclease V beta chain [Mycobacterium tuberculosis GM 1503] Length=547 Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/547 (99%), Positives = 541/547 (99%), Gaps = 0/547 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHA HRGVA +FQA QLAG+ R Sbjct 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHALHRGVAPLFQAPQLAGLDLR 540 Query 541 VLSQRGG 547 V+S RGG Sbjct 541 VMSHRGG 547 >gi|298524119|ref|ZP_07011528.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298493913|gb|EFI29207.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=499 Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/499 (99%), Positives = 499/499 (100%), Gaps = 0/499 (0%) Query 596 LDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQ 655 +DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQ Sbjct 1 MDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDGGAQ 60 Query 656 RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQV 715 RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQV Sbjct 61 RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQV 120 Query 716 PDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTT 775 PDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTT Sbjct 121 PDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTT 180 Query 776 WRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGS 835 WRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGS Sbjct 181 WRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGS 240 Query 836 LVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAA 895 LVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAA Sbjct 241 LVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAA 300 Query 896 AALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADR 955 AALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADR Sbjct 301 AALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADR 360 Query 956 LGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSD 1015 LGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSD Sbjct 361 LGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSD 420 Query 1016 YPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNP 1075 YPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNP Sbjct 421 YPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNP 480 Query 1076 PTALVVALSDLLDRGRLQS 1094 PTALVVALSDLLDRGRLQS Sbjct 481 PTALVVALSDLLDRGRLQS 499 >gi|298524120|ref|ZP_07011529.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis 94_M4241A] gi|298493914|gb|EFI29208.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis 94_M4241A] Length=543 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/503 (99%), Positives = 503/503 (100%), Gaps = 0/503 (0%) Query 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR Sbjct 1 MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60 Query 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT Sbjct 61 ELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA Sbjct 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA Sbjct 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 Query 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG Sbjct 241 LEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRG 300 Query 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR Sbjct 301 GDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360 Query 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV Sbjct 361 LASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPV 420 Query 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG Sbjct 421 VAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSG 480 Query 481 LVRAAACTMFFGETAESLAAEGD 503 LVRAAACTMFFGETAESLAAEG+ Sbjct 481 LVRAAACTMFFGETAESLAAEGE 503 >gi|119714519|ref|YP_921484.1| exodeoxyribonuclease V subunit beta [Nocardioides sp. JS614] gi|119535180|gb|ABL79797.1| exodeoxyribonuclease V, beta subunit [Nocardioides sp. JS614] Length=1111 Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/1128 (52%), Positives = 696/1128 (62%), Gaps = 67/1128 (5%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F + PLP T +LEASAGTGKT+ + L+TRY+AE A LD++L++TF RAAS+ELR Sbjct 7 FAITDPLP--AGTVLLEASAGTGKTWTIGALLTRYVAEGVARLDQLLVVTFGRAASQELR 64 Query 64 ERVRGQIVEAVGALQGDAPPSG--------------ELVEHLLRGSDAERAQKRSRLRDA 109 ERVR Q+VEA L GD P +G ELV L ER + R+ +A Sbjct 65 ERVRAQLVEAERVL-GDDPVAGDSGDPGDPGDPGDSELVTLLRSWGADERRRGHRRVTEA 123 Query 110 LANFDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQET 169 LA FDAATIATTH+FC VL SLGVAGD + L E L DLV E VDD YL F + Sbjct 124 LAGFDAATIATTHQFCSMVLDSLGVAGDTDSRARLVEDLDDLVKETVDDLYLRAFA--DA 181 Query 170 DPELTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQG 229 +P T+ EA+A+A A V DP A+L P + + A ++ FA V EL+RRK RL Sbjct 182 EPAFTHDEAMAIARAAVGDPQARLEPAGADRSTIAGRKVSFADAVRTELDRRKRRLGILS 241 Query 230 FNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIG 289 ++DLL +LA AL S A RMR RWRIVLVDEFQDTDP+QW VL+RAFS H+ ++LIG Sbjct 242 YDDLLSQLADALAQPGSAAAQRMRARWRIVLVDEFQDTDPVQWEVLDRAFSGHATMVLIG 301 Query 290 DPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVV 349 DPKQAIY FRGGD+ TYL+AA TA R TL VN RSD L+ ++QT+L A LG IVV Sbjct 302 DPKQAIYAFRGGDVTTYLRAAETAQTRQTLAVNRRSDGPLLAAVQTLLAGAELGDERIVV 361 Query 350 RGTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALL 409 AHH RLA AP P PFRLRVV+R T G G + + + +R H+ DLA DV LL Sbjct 362 HDVTAHHGESRLAGAPVPHPFRLRVVRRDTFGRRGGSTLTVGQVRPHVARDLALDVRRLL 421 Query 410 ASGATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCL 469 ASGAT+ G P+ D+AVI H D R AL E G+PA+ G VFA+ AA +WL L Sbjct 422 ASGATWCGEPIRPRDVAVISYRHADLATVREALLEVGVPAVIAGGGSVFATPAAIEWLTL 481 Query 470 LEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVF 529 LEA + P RS VR+AA T FFG TA L A GD LTD VA TLR W + RG+AAV Sbjct 482 LEALEQPHRSTRVRSAALTCFFGHTAVELDARGDDLTDEVADTLRGWVELFAGRGLAAVL 541 Query 530 QAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQ---AKAG 586 +AA +AG+ RVL++ GG+R LTDL HI + LHE R GLP L WLR Q +AG Sbjct 542 EAANVAGLPERVLAEIGGDRRLTDLRHIGEALHEVTLVARHGLPSLLTWLRGQVTEGRAG 601 Query 587 AGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDD-GTRCL 645 G E RRLDSDAAAVQ++T+ +KGL++P+VY+P +R V L+HDD GTRCL Sbjct 602 RG-VERTRRLDSDAAAVQLVTIHASKGLEYPVVYVPALADRFVPKPTRPLFHDDGGTRCL 660 Query 646 YIGG---KDGGAQ--RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGG 700 +GG DG A RR + E A + LRL YVA TRA+SQVVAWWAPT + V Sbjct 661 DVGGARSDDGWADHCRRWAD-----EEAGEWLRLLYVATTRAKSQVVAWWAPTKNAVASP 715 Query 701 LSRLLR--GRRP-GQSQVPDRCTPRVTDEQA-WAVFAQWEAAGGPSVEESVIGARSSLEK 756 L R+L G P G+ P V D+ A +F++W GGPS E+ I A + Sbjct 716 LHRMLMRDGDGPDGEMSASVPAAPAVPDDDAVVTLFSRWRERGGPS-PEAAIHADPGADP 774 Query 757 PVP-VPGFEVRHFHRRIDTTWRRTSYSDLVR---GSEAVTVTSEPAAGGRADE--VEIAV 810 P P P R F R IDT WRR SYS L R + A V SEP G+ DE AV Sbjct 775 PRPATPDLAARTFTRTIDTEWRRASYSSLSRVEVAAPAGAVVSEPEITGKEDEALAPEAV 834 Query 811 VAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDV 870 AP +D+ SP+A LP GA+FGSLVHAVLE DP A DL AEL + WW VD+ Sbjct 835 PVAPLLASDVPSPMAGLPVGATFGSLVHAVLEHTDPEAVDLRAELLGHIDEQLGWWPVDL 894 Query 871 DHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDV 930 D ELA AL+ + D+PLGP AA TLRQ+ + DRLRE++FE+PL G Sbjct 895 DRE----ELADALVAVCDSPLGPLAAGTTLRQVTLGDRLREMEFELPLGDG--------- 941 Query 931 SLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLV 987 L D+ LL HLP DP+ Y L LG+Q LRGYL GS+DVVLRL G RYLV Sbjct 942 LLGDLRPLLERHLPPGDPVRAYTAHL-DGPLGEQTLRGYLTGSVDVVLRLRSEAGPRYLV 1000 Query 988 VDYKTNHLGD-----TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPAR 1042 VDYKTN LG TA Y L AM HSDYPLQALLYV VLHRFLRWRQ Y P + Sbjct 1001 VDYKTNWLGPTDEPLTAHSYASVALDAAMGHSDYPLQALLYVAVLHRFLRWRQPGYDPEQ 1060 Query 1043 HLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLLDRG 1090 HLGGVLYL++RGMCG TP G P GVF W PP ALV LSDLLD G Sbjct 1061 HLGGVLYLYLRGMCGPDTPSVDGAPCGVFAWRPPVALVEELSDLLDGG 1108 >gi|258654033|ref|YP_003203189.1| exodeoxyribonuclease V subunit beta [Nakamurella multipartita DSM 44233] gi|258557258|gb|ACV80200.1| exodeoxyribonuclease V, beta subunit [Nakamurella multipartita DSM 44233] Length=1139 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/1133 (49%), Positives = 684/1133 (61%), Gaps = 57/1133 (5%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+ GPLPR TT+LEASAGTGKT A+ LVTRY+AE A D++L+ITF RAAS+ELR Sbjct 12 FDACGPLPR--GTTLLEASAGTGKTHAIGDLVTRYIAEGVARPDQLLVITFGRAASQELR 69 Query 64 ERVRGQIV--EAVGALQGDAPPSGELVEHLLRGS----DAERAQ---KRSRLRDALANFD 114 ERVR +V E A A + V LL G D + AQ +R RLR ALA +D Sbjct 70 ERVRDHLVRAERALADPAAARAGADPVHALLAGGPGAHDVDEAQVGRRRDRLRAALAGYD 129 Query 115 AATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELT 174 A+TI TTH+FC VL LGVAGD DVEL ++L DL+ ++VDD Y+A F R++ P Sbjct 130 ASTILTTHQFCQFVLTGLGVAGDADPDVELVDTLDDLIVQVVDDLYIAAFARRDLPPVFD 189 Query 175 YAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLL 234 ALALA VVDDP A L PPDP+P S A R++F V E+E RK + R G++DLL Sbjct 190 RDTALALARRVVDDPQALLAPPDPDPISPANWRIKFGQRVRREVEERKRQRRILGYDDLL 249 Query 235 IRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQA 294 RLATAL AD+PAR+RMR RW VLVDEFQDTDP+QW++L+RAFS H+ ++LIGDPKQ+ Sbjct 250 GRLATALAPADAPARERMRRRWSFVLVDEFQDTDPVQWQILDRAFSGHATMVLIGDPKQS 309 Query 295 IYGFRGGDIHTYLKAAGTAD-ARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTD 353 IY FRGGD+ TYL AA TA AR TL NWR+D LV +LQ +L + TLG +IVVR Sbjct 310 IYAFRGGDVPTYLAAAHTAGPARATLDRNWRTDPPLVTALQVLLHELTLGSPEIVVRPVV 369 Query 354 AHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGA 413 + G RL AP AP RLRV++R + +PI+ R I DLAAD+A LL +GA Sbjct 370 SALPGPRLHGAPSAAPLRLRVLRRDQVNCGAGELIPIDRARELIARDLAADLAELLGAGA 429 Query 414 TFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 TF +P+ A +AVIV HK AR + AL GIPA+ G + VF ++AA W+ LLEA Sbjct 430 TFDHKPLQAGHVAVIVGTHKQARTVQTALIRVGIPAVVAGSSSVFQTEAADQWVTLLEAL 489 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQ 533 + P R+ VRAAA T F G +A LAA G+ TD ++ + WA RGVAA+ + Sbjct 490 EQPHRAARVRAAALTAFVGWSAADLAARGEEATDELSVLISGWAGVLATRGVAALLEVVG 549 Query 534 L-AGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAG--PP 590 + G+ RVL + GGER LTDL H+ QLL AA ++ LG+ L +WLRR+ Sbjct 550 VETGLPARVLGRVGGERLLTDLRHVGQLLQTAAVQDSLGVAALAEWLRRRRADDRLDVTA 609 Query 591 EHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSD-DILLYHDDGTRCLYIGG 649 + RRL++DAAA Q++T+ +KGLQ+P+VYLPFAF+R + D+LL H DG R L IGG Sbjct 610 DRVRRLETDAAACQVVTLHASKGLQYPVVYLPFAFDRWYNDEPDVLLLHQDGHRVLDIGG 669 Query 650 KDG-GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGR 708 D G RR + L E A + LR YV LTRAQSQVV WWAPT + GL R+L G Sbjct 670 PDTPGRGRRRDQAL--AEEAGEALRHLYVGLTRAQSQVVTWWAPTKNTRTSGLHRVLFGD 727 Query 709 RPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEE-SVIGARSSLEKPVPVPGFEVRH 767 R VPD +DE A W+ G +E+ V AR V Sbjct 728 RDFDGGVPDSVK-VPSDEAARTRLDGWQQRGALVLEQVGVSAARPPAADAPRPDELAVAV 786 Query 768 FHRRIDTT-WRRTSYSDLVR--------GSEAVTVTSEPAAGGRADEVEIA--------- 809 HR ++ WRR SYS L G++A V + G + E+A Sbjct 787 LHRDLELQRWRRVSYSSLSAAGSSGLLIGADAGPVAGDLGVGSEPEHPELADEDGALAAP 846 Query 810 -----VVAAPGSGADLT-SPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHA 863 VA P + T SP+A LP GA+FG+LVHAV ET DP A DL A++ A+ Sbjct 847 AGAPDPVADPMAALRATLSPMADLPVGATFGTLVHAVFETTDPRAADLPAQVRARCAEQV 906 Query 864 PWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGD- 922 +D LA AL+P+ T LGP A LTL +G RDRL EL+FE+PLAGGD Sbjct 907 ARVGFPLD----PDTLAAALVPVLRTSLGPLAGGLTLADLGTRDRLTELEFELPLAGGDR 962 Query 923 LRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPG 982 G PD+ L D+ ++ HLP DPL+ YADRL + + PLRGYL GS+D VLRLPG Sbjct 963 AAGPVPDLVLGDLAPVIRRHLPAADPLAGYADRLAAPSFAELPLRGYLTGSLDAVLRLPG 1022 Query 983 QRYLVVDYKTNHLGD-------TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQ 1035 RYLV DYKTN LGD + DY + AM SDYPLQA+LY V LHRFLRWRQ Sbjct 1023 PRYLVADYKTNWLGDFDSGAPLSLWDYRPAAMDAAMAGSDYPLQAMLYTVALHRFLRWRQ 1082 Query 1036 RDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLLD 1088 Y P RH+ GVLYLFVRGM G TP G P GVF W PP L+ A+SDLLD Sbjct 1083 PGYHPGRHIAGVLYLFVRGMAGPDTPEIDGRPCGVFGWAPPVELITAVSDLLD 1135 >gi|41410190|ref|NP_963026.1| hypothetical protein MAP4092c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399024|gb|AAS06642.1| hypothetical protein MAP_4092c [Mycobacterium avium subsp. paratuberculosis K-10] Length=619 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/619 (65%), Positives = 464/619 (75%), Gaps = 17/619 (2%) Query 481 LVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540 +VRAAA TMFFGETAE+LAA GDALTDR+A TLREWA H+R RGVAA+F+AAQL GM R Sbjct 1 MVRAAAATMFFGETAETLAAGGDALTDRIAQTLREWAGHSRERGVAAIFEAAQLLGMSNR 60 Query 541 VLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDA 600 VL +GG R +TDLAH+ QLL E AHRE LP LRDWLRRQ +G PE NRRLDSDA Sbjct 61 VLGWQGGARHMTDLAHLTQLLGEVAHREHHNLPALRDWLRRQRDERSGAPERNRRLDSDA 120 Query 601 AAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHD-DGTRCLYIGGKDGGAQRRTV 659 AAVQIMTVFV+KGLQ+PIVYLPFAF+RN D++L+HD DGTRCL++GGKD +TV Sbjct 121 AAVQIMTVFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKD-SPDFKTV 179 Query 660 EGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRC 719 E L R E A D+ RLTYVALTRAQ+QVVAWW+P + E NGGLSRLLRGRRPG+ VPDRC Sbjct 180 ERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEPVVPDRC 239 Query 720 TP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPG-FEVRHFHRRIDTTWR 777 P +++D A A +WEAAGGP +EESV L VPVP E RHFHR IDT WR Sbjct 240 EPAKISDADALARLREWEAAGGPVIEESVPAPAPPLSG-VPVPARLENRHFHRGIDTGWR 298 Query 778 RTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLV 837 RTSYS L+R ++ V SEP A G DEV ++A S D+ SP+A LP+GA+FG+LV Sbjct 299 RTSYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVASPMADLPAGATFGTLV 358 Query 838 HAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAA 897 HAVL+TADP APDLAAEL A++R H+ WW V A ++A A++PMHDTPLGP A Sbjct 359 HAVLQTADPFAPDLAAELTARIREHSVWWPV----AATPEDMAAAMVPMHDTPLGPLAGG 414 Query 898 LTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLG 957 LTLR+IG+ DRL ELDFE+PLAGGD R P+V LAD+ LL +HLP DD L+ YADRL Sbjct 415 LTLRRIGLSDRLCELDFELPLAGGDRRSAPPEVRLADLSPLLRAHLPADDVLACYADRLT 474 Query 958 SAGLGDQPLRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFERLTE 1009 LG +PLRGYL GSID VLR+P G RYLVVDYKTN LGD TAADY R+ E Sbjct 475 DRSLGAEPLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYDRPRMVE 534 Query 1010 AMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAG 1069 AMLHSDYPLQALLY VLHRFLRWR Y P RHLGG+LYLFVRGMCG TPV GHP+G Sbjct 535 AMLHSDYPLQALLYSAVLHRFLRWRLAGYEPDRHLGGILYLFVRGMCGPDTPVRDGHPSG 594 Query 1070 VFTWNPPTALVVALSDLLD 1088 VF W PP++L+ ALSDLLD Sbjct 595 VFDWRPPSSLITALSDLLD 613 >gi|331697795|ref|YP_004334034.1| exodeoxyribonuclease V subunit beta [Pseudonocardia dioxanivorans CB1190] gi|326952484|gb|AEA26181.1| exodeoxyribonuclease V, beta subunit [Pseudonocardia dioxanivorans CB1190] Length=1137 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/1139 (46%), Positives = 650/1139 (58%), Gaps = 70/1139 (6%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F++ GPLP G TTVLEASAGTGKT+ +A L RY+AE ATL E++L+TF R A+ ELR Sbjct 15 FDVCGPLPATGATTVLEASAGTGKTYTIAALAARYVAEGIATLAELMLVTFGREATHELR 74 Query 64 ERVRGQIVEAVGALQGDAPPSGE---LVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ERVR ++ A AL A ++ HL A A +R RLR A+A FDAATIAT Sbjct 75 ERVRERLTAAERALADPAAARVAADGVLRHLAAADAATVALRRERLRLAVAEFDAATIAT 134 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETD-PELTYAEAL 179 TH+FC +L LGV GD D ES+ DLV E+VDD Y+ + + P AEAL Sbjct 135 THQFCQRMLAGLGVLGDADPDALFVESVDDLVEEVVDDFYVRKYAAAGAERPAFGRAEAL 194 Query 180 ALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLAT 239 LA AVV DP A++ P D +PGS AA R FA V E++RRK + ++D+L RL Sbjct 195 QLARAVVGDPQARIEPVDADPGSPAATRRSFAEAVRREVDRRKRAAKLYSYDDMLTRLDA 254 Query 240 ALEAADSPARD-----RMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQA 294 AL P R R+R R+R+VLVDEFQDTDP+QWR+L AF H+ L+LIGDPKQA Sbjct 255 ALS---DPVRGDAAAARLRSRYRVVLVDEFQDTDPVQWRILSAAFHGHTTLVLIGDPKQA 311 Query 295 IYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDA 354 IY FRG D+ +YL+AA A R+TL N+RSDRA+++++ + A LG IVV +A Sbjct 312 IYAFRGADVVSYLQAATDAGERFTLDRNFRSDRAVLDAVDALFHGAALGDPRIVVHHVEA 371 Query 355 HHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGAT 414 G L + AP R+RVV LG ++A R + D+AA +AALLASGA+ Sbjct 372 ARPGRSLRGSTCDAPLRVRVVGTQRLGRLFHRLGRVDAARPQVAADVAAQIAALLASGAS 431 Query 415 FAG-----RPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCL 469 R V+ D+AV+V + A L EAG+PA+ TG VF + A +WL L Sbjct 432 VVPADGVERAVLPGDVAVLVRTNDQAELVLRTLREAGVPAVVTGTRSVFTTPVAGEWLTL 491 Query 470 LEAFDAPQRSGLVRAAACTMFFGETAESLAA-EGDALTDRVAGTLREWADHARHRGVAAV 528 LEA + P +RAAA T F G T L + DA+ + + LR+WA R RGVAA+ Sbjct 492 LEALEQPHSGLRLRAAALTCFAGLTVTDLCGDDADAVVETLGDDLRDWAGALRGRGVAAL 551 Query 529 FQAAQL-AGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGA 587 +A + R+L++ G+R LTDL HI Q LH AA +E LG L +WLRR+ + Sbjct 552 LEAVSARRRLAERLLARTDGDRTLTDLRHIGQALHHAATQEHLGPSALVEWLRRRIEEAG 611 Query 588 GPP--EHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDD--GTR 643 E +RRL+SDA AVQI+TV +KG ++PIV +PFA++RNV+ + H+ R Sbjct 612 SDTGAERSRRLESDADAVQIVTVHRSKGQEYPIVAVPFAWDRNVQEPTLARLHEGPRQER 671 Query 644 CLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSR 703 L +GG G +G + E A ++LRL YVALTRA+SQ++ WW P L R Sbjct 672 VLDVGGP-SGPHFLERQGAHLAEEAGEDLRLLYVALTRARSQLLTWWVPATTTSKSALHR 730 Query 704 LLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAG-GPSVEESVIGARSSLEKPV---- 758 +L G G + P R T V + A AG GP V+ + + P Sbjct 731 MLAGGA-GPGETP-RETCAVPPDPGPVFDALVRRAGTGPDGSPHVVVEQVGDDVPAPWSP 788 Query 759 ---PVPGFEVRHFHRRIDTTWRRTSYSDLV-----RGSEAVTVTSEPAAGGRADEVEIAV 810 PVP + F R ID WRRTSYS L G+ V SEP G ADE Sbjct 789 PARPVPPLDAARFDRDIDLDWRRTSYSALTAAAHDAGAHTPAVVSEPEDPGIADE----- 843 Query 811 VAAPG----------SGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVR 860 A PG + + SP+A LP G +FG+LVHAVLE+AD A DL EL A+ R Sbjct 844 PAEPGPLLFTAADPAAAQAVPSPMADLPMGTAFGTLVHAVLESADTTAADLRGELAARAR 903 Query 861 RHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAG 920 VD ELA AL+P+ TP+GP L + DRL ELDFE+PLAG Sbjct 904 AELARRPAAVD----PDELAAALVPVVRTPMGPLVGGAALADVAPADRLSELDFELPLAG 959 Query 921 GDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL 980 GD G SP LADV LL HLP DDPL Y D L + L +Q LRGYL GSID VLR+ Sbjct 960 GDRPGPSP--VLADVARLLRRHLPADDPLVGYPDHLDAPLLAEQALRGYLTGSIDAVLRV 1017 Query 981 PGQRYLVVDYKTNHLGD---------TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFL 1031 G RY+VVDYKTN LG T+A YG LT+AM + YPLQALLY V LHR+L Sbjct 1018 -GGRYVVVDYKTNWLGPAGPDGHVPLTSAHYGAAALTQAMTSAHYPLQALLYGVALHRYL 1076 Query 1032 RWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLLDRG 1090 RWR Y P HLGG LYLF+RGMCG TP G PAGVF+W P AL+ LS LLD G Sbjct 1077 RWRLPGYDPGTHLGGSLYLFLRGMCGPDTPAADGVPAGVFSWAPRPALITDLSRLLDEG 1135 >gi|336460588|gb|EGO39481.1| hypothetical protein MAPs_39440 [Mycobacterium avium subsp. paratuberculosis S397] Length=611 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/611 (65%), Positives = 456/611 (75%), Gaps = 17/611 (2%) Query 489 MFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGE 548 MFFGETAE+LAA GDALTDR+A TLREWA H+R RGVAA+F+AAQL GM RVL +GG Sbjct 1 MFFGETAETLAAGGDALTDRIAQTLREWAGHSRERGVAAIFEAAQLLGMSNRVLGWQGGA 60 Query 549 RDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTV 608 R +TDLAH+ QLL E AHRE LP LRDWLRRQ +G PE NRRLDSDAAAVQIMTV Sbjct 61 RHMTDLAHLTQLLGEVAHREHHNLPALRDWLRRQRDERSGAPERNRRLDSDAAAVQIMTV 120 Query 609 FVAKGLQFPIVYLPFAFNRNVRSDDILLYHD-DGTRCLYIGGKDGGAQRRTVEGLNRVEA 667 FV+KGLQ+PIVYLPFAF+RN D++L+HD DGTRCL++GGKD +TVE L R E Sbjct 121 FVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKD-SPDFKTVERLGRKED 179 Query 668 AHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTP-RVTDE 726 A D+ RLTYVALTRAQ+QVVAWW+P + E NGGLSRLLR RRPG+ VPDRC P +++D Sbjct 180 ASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRVRRPGEPVVPDRCEPAKISDA 239 Query 727 QAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPG-FEVRHFHRRIDTTWRRTSYSDLV 785 A A +WEAAGGP +EESV L VPVP E RHFHR IDT WRRTSYS L+ Sbjct 240 DALARLREWEAAGGPVIEESVPAPAPPLSG-VPVPARLENRHFHRGIDTGWRRTSYSGLI 298 Query 786 RGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETAD 845 R ++ V SEP A G DEV ++A S D+ SP+A LP+GA+FG+LVHAVL+TAD Sbjct 299 RQAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVASPMADLPAGATFGTLVHAVLQTAD 358 Query 846 PAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGV 905 P APDLAAEL A++R H+ WW V A ++A A++PMHDTPLGP A LTLR+IG+ Sbjct 359 PFAPDLAAELTARIREHSVWWPV----AATPEDMAAAMVPMHDTPLGPLAGGLTLRRIGL 414 Query 906 RDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQP 965 DRL ELDFE+PLAGGD R P+V LAD+ LL +HLP DD L+ YADRL LG +P Sbjct 415 SDRLCELDFELPLAGGDRRSAPPEVRLADLAPLLRAHLPADDVLACYADRLTDRSLGAEP 474 Query 966 LRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFERLTEAMLHSDYP 1017 LRGYL GSID VLR+P G RYLVVDYKTN LGD TAADY R+ EAMLHSDYP Sbjct 475 LRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYDRPRMVEAMLHSDYP 534 Query 1018 LQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPT 1077 LQALLY VLHRFLRWR Y P RHLGG+LYLFVRGMCG TP+ GHP+GVF W PP+ Sbjct 535 LQALLYSAVLHRFLRWRLAGYEPDRHLGGILYLFVRGMCGPDTPMRDGHPSGVFDWRPPS 594 Query 1078 ALVVALSDLLD 1088 +L+ ALSDLLD Sbjct 595 SLITALSDLLD 605 >gi|334336344|ref|YP_004541496.1| exodeoxyribonuclease V, beta subunit [Isoptericola variabilis 225] gi|334106712|gb|AEG43602.1| exodeoxyribonuclease V, beta subunit [Isoptericola variabilis 225] Length=1121 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/1127 (48%), Positives = 655/1127 (59%), Gaps = 66/1127 (5%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F++ G LP TTVLEASAGTGKTF +A L TRY+AE A L E+LL+TF RAA+ ELR Sbjct 15 FDVCGELPT--GTTVLEASAGTGKTFTIAALATRYVAEGVAELPELLLVTFGRAATSELR 72 Query 64 ERVRGQIVEAVGALQG-DAPPSGE-LVEHLLRGSDAERAQKRSRLRDALANFDAATIATT 121 +RVR ++V AL+ DA S + +V HL DAE A +R RL AL+ FDAATIATT Sbjct 73 DRVRDRLVRTERALRSPDARESADAVVRHLADCDDAELALRRERLTRALSQFDAATIATT 132 Query 122 HEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALAL 181 H FC +L +LG A D D LTDLV E+VDD YL + Q +P L ++A + Sbjct 133 HGFCQQMLTTLGTAADVDPDARFVPDLTDLVDEVVDDLYLQRYADQ-AEPVLRPSDARRV 191 Query 182 ALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATAL 241 A + DP A+L P +PGS A R FA +V++E++RRK R F+DL RL AL Sbjct 192 AAEAMSDPQARLEPATADPGSPAGHRYAFARDVVDEVDRRKRERRLLDFDDLQTRLRDAL 251 Query 242 EAADSPARDRMRERWRIV--LVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFR 299 R R R LVDEFQDTDP+QW +L AF H L+LIGDPKQAIY FR Sbjct 252 ADPAGGPAAAARVRARYAVVLVDEFQDTDPVQWEILRTAFHGHRTLVLIGDPKQAIYAFR 311 Query 300 GGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGH 359 GGD+ TYL A A TLG +WRSD L+ L+TVLR A LG IVVR A H G Sbjct 312 GGDVVTYLAARADATTTATLGRSWRSDAPLLRGLETVLRGAALGDERIVVRPLQAQHMGR 371 Query 360 RLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAG-- 417 RL AP R+R V R LG GT + I A+R + D+AADV L S G Sbjct 372 RLDGG---APVRIRHVTREPLGVRGTRNAAIGAVRELVYADVAADVVRQLRSTRLRDGEA 428 Query 418 -RPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAP 476 RP+ D+AV+ + DA A R+AL AG+PA+ +G + VF + AA+DWL LL A + P Sbjct 429 WRPLQPGDVAVLARRNADAAAVRDALVAAGVPAVVSGLSSVFGTPAAQDWLTLLGALEQP 488 Query 477 QRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAG 536 G A A T F G A LA DA D ++ T+R WA +GVAA+ +A G Sbjct 489 GHHGRAAALALTPFVGWDAARLATATDAERDELSDTVRAWARALADKGVAALLEAVAAGG 548 Query 537 MGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQ-AKAGAG-PPEHNR 594 + R+L GER LTD+ H+ Q LH AA RLG L DWLRR+ A+AG E +R Sbjct 549 VAERLLRTAAGERTLTDVRHVGQALHLAAVEGRLGPAALTDWLRRRIAEAGEDYAEERSR 608 Query 595 RLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNR---NVRSDDILLYHDD-GTRCLYIGGK 650 RL++DAAAVQ++TV +KGL+FP+VY+PFA++R + R L +HDD G R L++GG+ Sbjct 609 RLETDAAAVQVVTVHASKGLEFPVVYVPFAWDRYEDSRRPPVALRFHDDLGARILHVGGQ 668 Query 651 DGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRP 710 D + +E + E ++LRL YVALTRA +QVV WWAP+ + G LSR+L G Sbjct 669 DDVHHKAALE-RHLAEDRGEDLRLLYVALTRAANQVVTWWAPSNNSGRGALSRVLLGDHA 727 Query 711 GQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPV---------P 761 Q P P+ TDE A AA +V + AR P PV P Sbjct 728 PGMQPPGHV-PQPTDEAVAQRLAALAAASDGTVAVETVTAR-----PEPVRWTAPAESRP 781 Query 762 GFEVRHFHRRIDTTWRRTSYSDLVRGS-EAVTVTSEPAAGGRADEVEIAVVAAPGSGAD- 819 V F RR+D WRRTSYS L + E V SEP G DEV++A+ A + AD Sbjct 782 DLGVARFDRRLDLAWRRTSYSGLTAAAHEHPGVASEPEEPGVQDEVDVALRGA--ARADH 839 Query 820 ----LTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQL 875 + SPLA +P+GA+FG+LVH VLE D APDL AE+ + VD Sbjct 840 PARAVVSPLADMPAGAAFGTLVHEVLEHVDTTAPDLRAEIARRCAEAGAARMPGVDDD-- 897 Query 876 APELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDL-RGRSPDVSLAD 934 ELA AL + D+PLGP A TLR++ DRL EL+FE+PLAGGD RG S L D Sbjct 898 --ELAAALEVVLDSPLGPLAGGRTLREVRPADRLAELEFELPLAGGDTPRGAS---RLDD 952 Query 935 VGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL--------PGQRYL 986 V LL HL DDP +PY D L + LG+ LRGYL GSID VLR+ G RYL Sbjct 953 VAALLRRHLAPDDPFAPYPDLLEA--LGESRLRGYLTGSIDAVLRVRSVDVGPDGGPRYL 1010 Query 987 VVDYKTNHLGD-----TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPA 1041 VVDYKTN LG TA Y E + EAM+ + YPLQ LLY+ LHRFLRWRQ Y P Sbjct 1011 VVDYKTNRLGVPDEPLTAWHYRPEAMAEAMMRAHYPLQLLLYLAALHRFLRWRQPGYDPD 1070 Query 1042 RHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLLD 1088 HL G LYLFVRGMCG +TPV PAGV W PP LV ALS LLD Sbjct 1071 VHLAGGLYLFVRGMCGPSTPVFDDGPAGVMAWRPPAGLVAALSALLD 1117 >gi|333920629|ref|YP_004494210.1| exodeoxyribonuclease V subunit beta [Amycolicicoccus subflavus DQS3-9A1] gi|333482850|gb|AEF41410.1| Exodeoxyribonuclease V, beta subunit [Amycolicicoccus subflavus DQS3-9A1] Length=1093 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/1111 (46%), Positives = 627/1111 (57%), Gaps = 57/1111 (5%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+L GPLP TTVLEASAGTGKT+A+ GL RY+AE A+L E+LL+TF+RAA++ELR Sbjct 2 FDLTGPLP--DGTTVLEASAGTGKTYAIVGLAARYVAEGRASLSELLLVTFSRAATQELR 59 Query 64 ERVRGQIVEAVGALQGDAPPSGE---LVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ER R ++ E AL + L+ HL G+ + ++R RL AL++FDAATIAT Sbjct 60 ERTRERLTETAYALADAHAAAAHDDPLIRHLATGTLEDVRERRDRLTHALSDFDAATIAT 119 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH FC +L SLG+AG++ V ES+ DL E++DD YL ++ Q P ++ A A A Sbjct 120 THSFCQRMLDSLGLAGEHEPHVTFTESIDDLAAEVIDDLYLKHYAGQSA-PPISLAAARA 178 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 ALA + D A+L P + + GS + FA E+ERRK + F+DLLI L Sbjct 179 AALAAIRDRQARLAPFNADDGSAPWHLVAFAEAARGEIERRKRIAGIRTFDDLLILLRDT 238 Query 241 L--EAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L + A +R+R ++R+VLVDEFQDTDP+QW +L RAF HS LIL+GDPKQAIY F Sbjct 239 LADQVHGDTACERVRRQYRLVLVDEFQDTDPVQWEILSRAFHGHSTLILVGDPKQAIYAF 298 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG ++ +YL AA A LGVNWRSD L+ +L + A LGHADIVV AHH Sbjct 299 RGAEVLSYLDAARQASNHRQLGVNWRSDAGLIAALDHLYGRAALGHADIVVGSVTAHHTK 358 Query 359 HRLASAPRPAPFRLRVVKRHTLGYDG-TAHVPIEALRRHIPDDLAADVAALLASGATFA- 416 R+ P RLR + R G G T PI LR + DLAADVA LL SG + Sbjct 359 SRIEET---VPLRLRYLPRTGSGPLGRTGFPPIGRLRARVARDLAADVARLLRSGRRVSL 415 Query 417 ---GRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 RPV DIA++V R+ L +P++ G VF + +A WL LL A Sbjct 416 GPEDRPVAPNDIAILVRKWAHIPYIRDELDRLAVPSVLAGGASVFTTPSATQWLWLLHAL 475 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQ-AA 532 + P R G VR AA T G E L E A ++G LR WA+ G AAV + A Sbjct 476 EQPHRPGRVRLAALTPLLGYRPEQLDDEAMA---GLSGHLRAWAELFSTAGFAAVSERIA 532 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRR--QAKAGAGPP 590 G R+LS GERDLTDL HIAQLL+EAA GL L WL R Q G Sbjct 533 AHTGFDARLLSHESGERDLTDLRHIAQLLNEAALENSYGLSALTRWLTRRIQDPNSGGGS 592 Query 591 EHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN--RNVRSDDILLYHDDGTRCLYIG 648 + ++RLDS+AAAVQI+T+ +KGLQFPIVY+P+ ++ ++ +LL+ DDG R L IG Sbjct 593 DRSQRLDSEAAAVQIVTIHGSKGLQFPIVYVPYGWDGAKDPYPSSLLLHDDDGRRILDIG 652 Query 649 GKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGR 708 GK+ R NR E A + LRL YVALTRAQ Q V WWAP + L RLL GR Sbjct 653 GKESPDFFRHRTRCNR-EDAGEELRLLYVALTRAQCQAVLWWAPAYGTETAPLQRLLMGR 711 Query 709 RPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGP--SVEESVIGARSSLE---KPVPVPGF 763 ++ P D A + W A SVE + G +L P PV Sbjct 712 SSDSTE-PALPAKVPEDHIAAQILEDWGGAAAQYISVEAAGKGGGPALSWEPAPEPVREL 770 Query 764 EVRHFHRRIDTTWRRTSYSDLV-RGSEAVTVTSEPAAGGRADE--VEIAVVAAPGSGADL 820 FHR +D WRRTSYS L+ + V+SEP +DE E +V+ G L Sbjct 771 AAAEFHRSLDAKWRRTSYSALIATAHDPAGVSSEPEEPVISDEPDAEPHLVSDRGGAPSL 830 Query 821 TSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAP-EL 879 + LPSGA FG+LVH +LET D + DL AEL + R + H+++ P L Sbjct 831 ---MNDLPSGAVFGTLVHEILETVDTSTGDLPAELHNRCRD-----AIRRRHSEVEPAAL 882 Query 880 ARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELL 939 A AL + TPLG TL I D L EL FE PLAGGD S V+L + LL Sbjct 883 ATALHAVMTTPLGYG----TLADIRPGDLLPELSFEFPLAGGDT-PVSDRVTLQRIARLL 937 Query 940 ASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGD-- 997 +H+P DDPL+ Y L + + PLRG+L GSID VLR+PG RY+V DYKTN LG Sbjct 938 HNHVPADDPLASYHRVLTT--VKAPPLRGFLTGSIDAVLRVPGPRYIVADYKTNRLGRGD 995 Query 998 -TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMC 1056 T Y E + MLH+ YPLQALLY V LHR+LRWRQ Y P HLG V YLFVRGM Sbjct 996 LTVGHYTPEAMAAEMLHAHYPLQALLYCVALHRYLRWRQPHYEPEVHLGTVQYLFVRGMI 1055 Query 1057 GAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 G TP GH GVF W PP LVV LSD+L Sbjct 1056 GPDTP--PGH--GVFEWKPPARLVVQLSDML 1082 >gi|111018834|ref|YP_701806.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1] gi|110818364|gb|ABG93648.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1] Length=1103 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/1119 (46%), Positives = 648/1119 (58%), Gaps = 68/1119 (6%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+LLGPLP EGTT VLEASAGTGKT+A+ GL R++AE L ++LL+TF+RAA++ELR Sbjct 7 FDLLGPLP-EGTT-VLEASAGTGKTYAIVGLAARFVAEGGVDLSQLLLVTFSRAATQELR 64 Query 64 ERVR---GQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ER R G A+ + +L+ HL E +R RL AL++FDAATI T Sbjct 65 ERTRERFGSAAAALADPAAARLSADQLIRHLAEADTGEVTLRRRRLLQALSDFDAATIVT 124 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH FC +L LG+AG+ D L E+ DL TE++ D YL + R E+ P T AEA A Sbjct 125 THSFCQRMLDGLGIAGERDPDTVLVEAADDLTTEVIADLYLRAYSRVESAP-FTPAEATA 183 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 A A + DP A L P D G+ A R+ FA V E+ERRK + + F+DL + L Sbjct 184 AARAAIFDPQAVLAPEDTR-GTPAGDRVAFAEAVRAEVERRKRAVGLRDFDDLPMLLHRV 242 Query 241 LEAAD--SPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L + + A R+RER+ +VLVDEFQDTDP+QW +L R F ++L+GDPKQAIY F Sbjct 243 LSDPEHGAAACRRVRERYGVVLVDEFQDTDPLQWDILRRTFHGSGTVVLVGDPKQAIYAF 302 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG ++ +YL A +AD L NWRSD+ L++ L+ + A LGH +IVV D Sbjct 303 RGAEVLSYLDAVRSADRHQELTTNWRSDQELLDGLEYLHGGAALGHPEIVVHRVDGARPK 362 Query 359 HRLASAPRPAPFRLRVVKRHTLG-YDGTAHVPIEALRRHIPDDLAADVAALLASGATF-- 415 RL A AP RLR + R G + + + + LR+ I DLAADV ALL GAT Sbjct 363 SRLTGA---APLRLRYLPRTGAGPINKSGYPAVGPLRKRIAADLAADVVALLDGGATLDV 419 Query 416 --AGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 R V DIAV+V + +AL AG+P++ G VF + AA+ WL +L+A Sbjct 420 GGDTRLVEPGDIAVLVRTNAQITLVHDALDRAGVPSVLAGGASVFTTPAAQHWLWILQAI 479 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQ-AA 532 + P RS VR AA T G TAE L A GD + V G LRE G AA+F+ + Sbjct 480 EQPHRSDRVRLAALTPLLGHTAEELDARGDDIVAEVGGQLRELGAVFAQSGFAALFERLS 539 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAK-AGAGPPE 591 +A + R+L GER LTDL H+AQLL+ AA + LGL + WL + K +G + Sbjct 540 AVAALEARLLRVAAGERALTDLRHVAQLLNGAAVEQSLGLTAVTRWLTERMKDPSSGGVD 599 Query 592 HNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN--RNVRSDDILLYHDDGTRCLYIG- 648 +RRLDSDAAAVQI TV +KGL+FP+VYLP+A++ + + +LL+ DDG R L +G Sbjct 600 RSRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAKISKPSKLLLHDDDGRRILDVGG 659 Query 649 -GKDGGAQRRTVEGLNR--VEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLL 705 G G A RR NR E A + LRL YVA+TRA +V WWAP F L R++ Sbjct 660 PGSPGYADRR-----NRHDAEEAGEELRLLYVAVTRAMCGLVVWWAPAFTTAGAPLHRMI 714 Query 706 RGRRPGQSQVPDRCT----PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLE-----K 756 GR+PGQ +VP + T P V + + W A +V +G+ + + Sbjct 715 LGRQPGQREVPQKVTVPEDPVVAER-----LSAWGTAAPETVTVEAVGSDPIVRVGWTPQ 769 Query 757 PVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGS-EAVTVTSEPAAGGRADEVEIAVVAAPG 815 P E F R +DT WRRTSYS L + +A V SE + DE + AP Sbjct 770 REPRGDLEAARFRRLLDTRWRRTSYSALTASAHDAPAVGSEAEVEEKTDEPAEPPLQAP- 828 Query 816 SGADLTSPLAA----LPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVD 871 AD+TS +A+ LP GA+FG+LVHAV E D AAPDL AE+ R D+D Sbjct 829 --ADITSGVASTMNELPGGATFGTLVHAVFEIVDTAAPDLDAEVLRCCRDVIASTLSDID 886 Query 872 HAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVS 931 AQ LA ALLP+ TPLG A A TL I D L ELDFE+PLAGGD S V Sbjct 887 PAQ----LATALLPVLRTPLG-AGAETTLADIAPADLLAELDFELPLAGGDT--PSLTVM 939 Query 932 LADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYK 991 L VGELL +HLP DDPL YAD + + L PLRGYL GSID VLRLPG RY+VVDYK Sbjct 940 LDGVGELLRTHLPVDDPLRSYADAVQT--LEPTPLRGYLTGSIDAVLRLPGPRYVVVDYK 997 Query 992 TNHL--GD-TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVL 1048 TN L GD T A Y E + M+ + YPLQALLY V LHR+LRWRQ +Y PA HLGGV Sbjct 998 TNRLAQGDLTTAHYTRESMAAEMVRAHYPLQALLYSVALHRYLRWRQPNYDPAVHLGGVQ 1057 Query 1049 YLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 YLFVRGM G TP GVF W PP AL+ LSDLL Sbjct 1058 YLFVRGMVGPDTPPG----CGVFDWAPPAALITELSDLL 1092 >gi|336118818|ref|YP_004573590.1| exodeoxyribonuclease V subunit beta [Microlunatus phosphovorus NM-1] gi|334686602|dbj|BAK36187.1| exodeoxyribonuclease V beta chain [Microlunatus phosphovorus NM-1] Length=1142 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/1150 (46%), Positives = 658/1150 (58%), Gaps = 88/1150 (7%) Query 2 DRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRE 61 D FE+ GPLP TTVLEASAGTGKT+ +A LV RY+AE A L +++++TF R A+ E Sbjct 18 DTFEICGPLPT--GTTVLEASAGTGKTYTIAALVARYVAEGLAELPQLMVVTFGRMATDE 75 Query 62 LRERVRGQIV----EAVGALQGDAP----PSGELVEHLLRGSD-AERAQKRSRLRDALAN 112 LR RVR ++V + AL+ P P + V LL D AE+ + R+ ALA+ Sbjct 76 LRVRVRERLVGLETQLAAALELTPPGLTVPEPDDVASLLIQVDPAEQTARHDRVSRALAD 135 Query 113 FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172 FD ATIATTHEFC +L LGV GD D E L +L E+ D YL + T Sbjct 136 FDTATIATTHEFCQRMLDDLGVLGDPEPDAVFVEHLAELTEEVARDVYLRRYAAAPTS-T 194 Query 173 LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232 LTYA+A+ LA VV +L P G++A R+ FA EV+ E+ RRK R R + ++D Sbjct 195 LTYADAVRLADDVVRAGPIRLVP-GLGAGARADERVEFAHEVIAEVRRRKARARYRTYDD 253 Query 233 LLIRLATAL--EAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGD 290 +L RL AL E + A +R+RER+ +VLVDEFQDTDP+QW +L RAF H L++IGD Sbjct 254 MLTRLQAALADEQHGALAAERLRERFHVVLVDEFQDTDPIQWDILRRAFHGHRTLVVIGD 313 Query 291 PKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVR 350 PKQAIY FRG D+++YL+ A A TLG +RSDRAL++ L ++ A+LG IVVR Sbjct 314 PKQAIYAFRGADVNSYLQVAREASQVATLGTCYRSDRALLDGLDLIMGGASLGDPKIVVR 373 Query 351 GTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLA 410 + H RL A AP R+RV+ R G + ++ LR + DL A+++ LL Sbjct 374 PVGSAHPVRRLTGA--GAPVRVRVLPRKLEGQEY-----VQRLRDRVAKDLVAEISQLLG 426 Query 411 SGATF-----AGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKD 465 SGA A RP+ A+D+AV+V + R+ALA AGIPA+ G VF+S AA+D Sbjct 427 SGAQLQLAGAASRPIGASDLAVLVRRNVAGEQIRDALAAAGIPAVLHGSDSVFSSAAARD 486 Query 466 WLCLLEAFDAPQRSGLVRAAACTMFFGETAESLA-AEGDALTDRVAGTLREWADHARHRG 524 WL LL+A + P R LVR A+ T G T LA A+ AL D ++ R W+ HRG Sbjct 487 WLRLLQALEQP-RQQLVREASLTSLVGWTFPRLARADETALAD-LSYDFRRWSRTLAHRG 544 Query 525 VAAVFQA----AQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLR 580 VAA+ +A L+G RVLSQ GER LTDL HIAQ LH ++LG GLR+WL Sbjct 545 VAALLEALGADTDLSG---RVLSQPDGERLLTDLRHIAQRLHAVMSGQQLGAAGLREWLA 601 Query 581 RQAKAGAGP--PEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDD---IL 635 A A E RRL +DAAAVQI+T+ +KGLQFPIVYLP A++ V SDD +L Sbjct 602 EAIDAAATDDVTEGLRRLATDAAAVQILTLHRSKGLQFPIVYLPEAWDCFVPSDDRGSVL 661 Query 636 LYHDD-----GTRCLYIGGK-DGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAW 689 H+ G L +GG+ G R + L E A ++LRL YV LTRAQ QVV W Sbjct 662 RLHEQDEHERGEEVLDVGGRYAAGRSERLRQAL--AEEAGEHLRLYYVGLTRAQCQVVTW 719 Query 690 WAPTFDEVNGGLSRLL-RGRRPGQSQVPDRCTPRVTDEQAWAVFAQWE----AAGGPSVE 744 WA + + L R R RR G + PD P W + +A SVE Sbjct 720 WADSRNTPTSALHRYWARSRRSGDVE-PD--YPVDLGPADWPLPRSTTPGDASAKLLSVE 776 Query 745 E-SVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVT----VTSEPAA 799 + + +GA L ++RHF R +DT WRRTSYS L + + VTSEP Sbjct 777 QVAALGATPQLRASKSPAALDIRHFTRELDTHWRRTSYSALTAAAHGLPSSPGVTSEPEL 836 Query 800 GGRADEVEIA---------VVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPD 850 DE + + AP L SP+ LP+GA FG+ VH VLE DP D Sbjct 837 LKEDDENLLGPDQTTGHAELAPAPDPADTLPSPMGQLPAGADFGTAVHGVLEVLDPTGDD 896 Query 851 LAAELEAQVRRHAPWWTVDVDHAQLAPE-LARALLPMHDTPLGPAAAALTLRQIGVRDRL 909 LAA A + H L+PE LA ALLP TPLGP A LTL ++ DRL Sbjct 897 LAAATLAATTEA----LAGLPHGALSPEQLAEALLPCLQTPLGPLADDLTLAELSPHDRL 952 Query 910 RELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGY 969 EL FE+PLAGGD R R+ DV LAD+ LLA HLP DDPL+ Y + L L ++ LRGY Sbjct 953 SELVFELPLAGGD-RPRA-DVRLADLAPLLARHLPADDPLTGYPELLTHPPLAEESLRGY 1010 Query 970 LAGSIDVVLRL---PGQRYLVVDYKTNHLGD------TAADYGFERLTEAMLHSDYPLQA 1020 L GSID VLR+ +RYLVVDYKTN LG T ADY + AM + YPLQA Sbjct 1011 LTGSIDAVLRVGPAESRRYLVVDYKTNWLGRGGPGELTVADYSPASMAAAMTAAHYPLQA 1070 Query 1021 LLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALV 1080 LLY V LHR LRWRQ Y P HLGGVLYLF+RGM G ATP P GVF+W PP AL+ Sbjct 1071 LLYQVALHRLLRWRQPGYDPETHLGGVLYLFLRGMAGPATPRIDDVPYGVFSWQPPAALI 1130 Query 1081 VALSDLLDRG 1090 LS+LLDRG Sbjct 1131 TELSELLDRG 1140 >gi|226304347|ref|YP_002764305.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4] gi|226183462|dbj|BAH31566.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4] Length=1105 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/1116 (45%), Positives = 630/1116 (57%), Gaps = 59/1116 (5%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+LLGPLP TTVLEASAGTGKT+A+ GL TR +AE A + ++LL+TF+RAA++ELR Sbjct 3 FDLLGPLPT--GTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR 60 Query 64 ERVRGQIVEAVGAL---QGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ER R + AL + +LV +L D E +R RL ALA FDA TI T Sbjct 61 ERARERFAGVSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH FC +L LG+AG+ D ES+ DL++E+V D YL+ + R ++ P + +ALA Sbjct 121 THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 +A V D A L P D E + R+ FAA E+ERRK + FNDLL L Sbjct 181 IARIAVGDGQAILEP-DGEEETAPGQRVLFAAAARLEVERRKRTKGIRDFNDLLTLLHGV 239 Query 241 LEAAD--SPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L + A R+RE++++VL+DEFQDTDP+QW +L AF H+ L+L+GDPKQAIY F Sbjct 240 LTDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAF 299 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG ++ +YL A ADA L NWRSD L+ +L+ + A LG+ IV +A H Sbjct 300 RGAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKK 359 Query 359 HRLASAPRPAPFRLRVVKRHTLGYDGTAHVP-IEALRRHIPDDLAADVAALLASGATFA- 416 RL+ P P R+R + R G + P + LR + DD+AADV LL S A A Sbjct 360 SRLSG---PVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVGLLGSDARLAV 416 Query 417 ---GRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 RPV D+AV+V HK R+AL G+P++ TG + VFA+ +A WL LL+A Sbjct 417 DGDPRPVEPGDVAVLVRTHKQVAMIRDALDAVGVPSVLTGGSSVFATPSATQWLWLLQAI 476 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQ-AA 532 + P RS VR A + FG TAE L +GD + +AG LR ++ G AAVF+ + Sbjct 477 EQPHRSDRVRLTALSPIFGRTAEELDVDGDNVVAELAGQLRSYSGLFARVGFAAVFERIS 536 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAK--AGAGPP 590 + +RVL+ GERD TDL H+AQLL A E GL L WL + K Sbjct 537 AETNLEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSAT 596 Query 591 EHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNR--NVRSDDILLYHDDGTRCLYIG 648 + +RRLDSDAAAVQI TV KGL+FPIVY+PF++ S LL+ DG R L +G Sbjct 597 DRSRRLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPDGRRILDVG 656 Query 649 GKDGGAQ--RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLR 706 G++G R+TV E A + LRL YVALTRAQ Q+V WWAP++ L RL+ Sbjct 657 GQEGPGHNARKTV---AEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLML 713 Query 707 GRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPG---- 762 GR PG ++ P R + D A A W AA + +G PV G Sbjct 714 GRTPGIAE-PARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPP--SPVQWSGAAAN 770 Query 763 ---FEVRHFHRRIDTTWRRTSYSDLVRGS-EAVTVT-SEPAAGGRADEVEIAV---VAAP 814 F R +DT WRRTSYS L G+ AVT T SE + DE E +V P Sbjct 771 VTELAAARFDRDLDTLWRRTSYSALTAGAHHAVTSTDSEVEDPEKDDEPEDSVDFGTVTP 830 Query 815 GSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQ 874 L SP+ LP+GA+FG+LVH VLE D AA DL AEL + +VD Sbjct 831 SPLEALPSPMNGLPAGAAFGTLVHEVLEVVDTAASDLRAELGIRCAEAVSVRAAEVD--- 887 Query 875 LAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLAD 934 + LA ALL + TPLG TL I +DRL ELDFE+PLAGGD S V+L Sbjct 888 -SEALADALLLVMQTPLGFG----TLATIAPKDRLPELDFELPLAGGD-DPVSMSVTLRG 941 Query 935 VGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNH 994 V ELL HLP DD L+ YAD L + P+RG+L GSID VLR+PG +++VDYKTN Sbjct 942 VSELLRRHLPPDDILASYADHLDR--VETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNR 999 Query 995 LGD---TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLF 1051 LG TAA+Y E + M+ S YPLQALLY V LHR+LRWR DY P RHLGG Y F Sbjct 1000 LGRGDLTAANYTRELMATEMMRSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQF 1059 Query 1052 VRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 VRGM G +P GVF W PP L V LSDLL Sbjct 1060 VRGMLGPDSPPE----CGVFEWKPPAQLTVELSDLL 1091 >gi|54024515|ref|YP_118757.1| putative RecB protein [Nocardia farcinica IFM 10152] gi|54016023|dbj|BAD57393.1| putative RecB protein [Nocardia farcinica IFM 10152] Length=1113 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/1123 (45%), Positives = 621/1123 (56%), Gaps = 72/1123 (6%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+ GPLPR TTVLEASAGTGKT A+ GL RY+AE + E+LL+TF+RAA++ELR Sbjct 17 FDPCGPLPR--GTTVLEASAGTGKTHAIVGLAVRYVAEAGVRIAELLLVTFSRAATQELR 74 Query 64 ERVRGQIVEAVGALQGDAPPSG-----ELVEHLLRGSDAERAQKRSRLRDALANFDAATI 118 ER R + V AL P S EL+ HL D E A +R+RL AL++FDA TI Sbjct 75 ERARDRFVAVAAALAD--PDSARAAGDELIAHLAAADDTEVALRRTRLLTALSDFDAGTI 132 Query 119 ATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEA 178 ATTH FC +L LG+AG+ L E++ DLV + DD YL + R + P EA Sbjct 133 ATTHSFCQRMLDELGLAGERDTAARLVETVDDLVVTVADDLYLHRYARAQ--PPFGRKEA 190 Query 179 LALALAVVDDPCAQLRPPDP-EPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRL 237 LALA V D A+L P D EPG + A AE ERRK R G D L Sbjct 191 HTLALAAVRDRHARLVPDDEDEPGERVAFAAAVRAET----ERRK---RLAGLRDFDDLL 243 Query 238 ATALEAADSP-----ARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292 + P A R+R R+R+ LVDEFQDTDP+QW +L R+F H+ L+L+GDPK Sbjct 244 VLLHDVLADPDHGEGACARVRARYRVALVDEFQDTDPLQWDILRRSFHGHTTLVLVGDPK 303 Query 293 QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352 QAIY FRG ++ +YL A AD+R L NWRSD L+ +L + A LGH +I V Sbjct 304 QAIYAFRGAEVLSYLDAVAHADSRKELTRNWRSDAGLLRALDHLQGGAALGHPEISVYPV 363 Query 353 DAHHAGHRLAS-APRPAPFRLRVVKRHTLGYDGTAHVP-IEALRRHIPDDLAADVAALLA 410 +A RL+ A P RLR + R G + P + R + DDLAAD+ LL Sbjct 364 EATRPWSRLSGPAELITPLRLRCLPRTGAGPLNKSGFPAVGRQRAKVADDLAADLVRLLE 423 Query 411 SGATFAG--------RPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQA 462 SGA RPV A DIAV+V R AL G+ ++ G T VF + + Sbjct 424 SGAEVTDGHGAGAVRRPVAAGDIAVLVRTRTQIDVVRAALDRVGVASVLAGGTSVFGTPS 483 Query 463 AKDWLCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARH 522 A WL +L A + P RS VR AA T G + G L RV+ LR+ A Sbjct 484 ATHWLWVLRALEQPHRSDRVRLAAATPILGYPPAEIDRGGADLVGRVSAQLRDAARLFAR 543 Query 523 RGVAAVFQ--AAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWL- 579 G AAV++ AAQ A + R+L GER LTDL HIAQLL + A + LGL L WL Sbjct 544 AGFAAVYERLAAQ-ARLAPRLLGIENGERTLTDLRHIAQLLDQVALADGLGLTALTRWLA 602 Query 580 -RRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN--RNVRSDDILL 636 R + A + +RRLD DAAAVQI TV +KGL+FPIVYLPFA++ +N +L Sbjct 603 DRVRDPASGAVADRSRRLDRDAAAVQIATVHASKGLEFPIVYLPFAWDNAKNPYPGSLLF 662 Query 637 YHDDGTRCLYIGGKD--GGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTF 694 + DDGTR L +GG D G AQR+ E A + LRL YVALTRA+ QVVAWWAP Sbjct 663 HDDDGTRVLDVGGPDAPGYAQRKL---RCEAEEAGEELRLLYVALTRAKCQVVAWWAPAH 719 Query 695 DEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSL 754 L R++ GR G VPDR P D A +F W G ++ + + ++ Sbjct 720 STAAAPLHRMILGRPEGGPHVPDRA-PVPADTAAVPMFTAWAEPAGAAISVTAVDTAEAV 778 Query 755 E----KPVPVPG-FEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPA-AGGRADEVEI 808 E + PV G F R +D WRRTSYS L G+ + +EP G DE E Sbjct 779 EIRRVRVEPVTGELAAARFDRSLDLLWRRTSYSALTAGAHDLVTDAEPEDVRGPGDEPET 838 Query 809 -AVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWT 867 A++ + S + LP GA FG+LVH VLE D APDLAAE+ + R A Sbjct 839 PALLTDEPAATAAPSLMNDLPYGAEFGTLVHGVLERIDTDAPDLAAEVRTRCREAAAELL 898 Query 868 VDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRS 927 D+DH LA ALL + TPLG TL I RDRL EL+FE+PL GGD + Sbjct 899 ADLDHGV----LATALLAVLRTPLGFG----TLADIAARDRLSELEFELPLGGGDTPA-A 949 Query 928 PDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLV 987 +L + EL+ +HL D LS Y D L AGL D LRGYL GSID VLRLPG +++V Sbjct 950 RAATLGAIAELVRAHLGPADDLSGYPDLL--AGLDDVTLRGYLTGSIDAVLRLPGPKFVV 1007 Query 988 VDYKTNHLGD---TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHL 1044 VDYKTN LG T Y ER+ ML S YPLQALLY V LHR+LRWR Y PARHL Sbjct 1008 VDYKTNRLGTGDLTVGHYTRERMAAEMLRSHYPLQALLYSVALHRYLRWRLPGYDPARHL 1067 Query 1045 GGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 GG YLFVRGM G TP GH GVF W+PP LV+ALSDLL Sbjct 1068 GGCRYLFVRGMIGPETP--PGH--GVFDWDPPVPLVLALSDLL 1106 >gi|229494476|ref|ZP_04388239.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis SK121] gi|229318838|gb|EEN84696.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis SK121] Length=1105 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/1118 (44%), Positives = 628/1118 (57%), Gaps = 63/1118 (5%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+LLGPLP TTVLEASAGTGKT+A+ GL TR +AE A + ++LL+TF+RAA++ELR Sbjct 3 FDLLGPLPT--GTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR 60 Query 64 ERVRGQIVEAVGAL---QGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ER R + AL + +LV +L D E +R RL ALA FDA TI T Sbjct 61 ERARERFAGVSAALVDPEAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITT 120 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH FC +L LG+AG+ D ES+ DL++E+V D YL+ + R ++ P + +ALA Sbjct 121 THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA 180 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 +A + V D A L P D E + R+ FAA E+ERRK + FNDLL L Sbjct 181 IARSAVGDGQAILEP-DGEEETAPGQRVLFAAAARLEVERRKRTKGIRDFNDLLTLLHGV 239 Query 241 LEAAD--SPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L + A R+RE++++VL+DEFQDTDP+QW +L AF H+ L+L+GDPKQAIY F Sbjct 240 LTDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAF 299 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG ++ +YL A ADA L NWRSD L+ +L+ + A LG+ IV +A H Sbjct 300 RGAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKK 359 Query 359 HRLASAPRPAPFRLRVVKRHTLGYDGTAHVP-IEALRRHIPDDLAADVAALLASGATFA- 416 RL P P R+R + R G + P + LR + DD+AADV ALL A A Sbjct 360 SRLFG---PVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVALLGGDARLAV 416 Query 417 ---GRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 RPV D+AV+V HK R+AL G+P++ TG + VFA+ +A WL LL+A Sbjct 417 DGDPRPVEPGDVAVLVRTHKHVAMIRDALDAVGVPSVLTGGSSVFATPSATQWLWLLQAI 476 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQ-AA 532 + P RS VR A + FG T+E L +GD + +AG LR ++ G AAVF+ + Sbjct 477 EQPHRSDRVRLTALSPIFGRTSEELDKDGDNVVAELAGQLRSYSGLFARVGFAAVFERIS 536 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAK--AGAGPP 590 + +RVL+ GERD TDL H+AQLL A E GL L WL + K Sbjct 537 AETNLEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSAT 596 Query 591 EHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNR--NVRSDDILLYHDDGTRCLYIG 648 + +RRLDSDAAAVQI TV KGL+FPIVY+PF++ S LL+ +G R L +G Sbjct 597 DRSRRLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPEGRRILDVG 656 Query 649 GKDGGAQ--RRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLR 706 G++G R+TV E A + LRL YVALTRAQ Q+V WWAP++ L RL+ Sbjct 657 GQEGPGYNARKTV---AEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLML 713 Query 707 GRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVP------- 759 GR PG ++ P R + D A A W AA + +G P P Sbjct 714 GRTPGIAE-PARVVKVLDDGTTAARLATWPAAASDVISVEPVGP----HPPSPVHWSRAA 768 Query 760 --VPGFEVRHFHRRIDTTWRRTSYSDLVRGS-EAVTVT-SEPAAGGRADEVEIAV---VA 812 V F R +DT WRRTSYS L G+ AVT T SE + DE E +V Sbjct 769 ADVTELAAARFDRDLDTLWRRTSYSALTAGAHHAVTTTGSEVEDPEKDDEPEDSVDLGSI 828 Query 813 APGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDH 872 P SP+ LP+GA+FG+LVH VLE D AA DL AEL + +VD Sbjct 829 TPSPLEAFPSPMNGLPAGAAFGTLVHEVLEVVDTAAADLRAELGMRCAEAVSVRAAEVD- 887 Query 873 AQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSL 932 + LA AL + TPLG TL I +DRL ELDFE+PLAGGD S V+L Sbjct 888 ---SEALADALYLVMQTPLGFG----TLATIAPKDRLPELDFELPLAGGD-DPVSMSVTL 939 Query 933 ADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKT 992 V ELL HLP DD L+ YAD L + P+RG+L GSID VLR+PG +++VDYKT Sbjct 940 RGVSELLRRHLPADDILASYADYLDR--VETSPMRGFLTGSIDAVLRIPGPSFVIVDYKT 997 Query 993 NHLGD---TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLY 1049 N +G TAA+Y E + M+ S YPLQALLY V LHR+LRWR DY P RHLGG Y Sbjct 998 NRIGRGDLTAANYTRELMATEMMRSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQY 1057 Query 1050 LFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 FVRGM G +P GVF W PP L V LSDLL Sbjct 1058 QFVRGMLGPDSPPE----CGVFEWKPPAQLTVELSDLL 1091 >gi|226360933|ref|YP_002778711.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4] gi|226239418|dbj|BAH49766.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4] Length=1103 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1121 (45%), Positives = 639/1121 (58%), Gaps = 72/1121 (6%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+LLGPLP EGTT VLEASAGTGKT+A+ GL R++AE L +LL+TF+RAA++ELR Sbjct 7 FDLLGPLP-EGTT-VLEASAGTGKTYAIVGLAARFVAEGGVDLSRLLLVTFSRAATQELR 64 Query 64 ERVR---GQIVEAVGALQGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ER R G A+ + ++ HL + E A +R RL AL++FDAATI T Sbjct 65 ERTRERFGSAAAALADPAAARLSADLVIRHLAEAAADEVALRRRRLLQALSDFDAATIVT 124 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH FC +L LG+AG+ D L E+ DL TE++ D YL +GR ++ P T AEA + Sbjct 125 THSFCQRMLDGLGIAGERDPDTVLVEAADDLTTEVIADLYLRAYGRADSAP-FTPAEATS 183 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 A A + DP A L P D G+ A R+ FA V E+ERRK + + F+DL + L Sbjct 184 AARAAIFDPQAVLAPEDAR-GTPAGDRVAFAEAVRAEVERRKRAVGLRDFDDLPMLLHRV 242 Query 241 LEAAD--SPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L + + A R+RER+ +VLVDEFQDTDP+QW +L R F + L+L+GDPKQAIY F Sbjct 243 LSDPEHGAAACRRVRERYGVVLVDEFQDTDPLQWDILRRTFHGNGTLVLVGDPKQAIYAF 302 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG ++ +YL A +AD L NWRSD+ L++ L+ + A LGH +IVV D Sbjct 303 RGAEVLSYLDAVRSADRHQELTTNWRSDQELLDGLEYLHGGAELGHPEIVVHRVDGARPK 362 Query 359 HRLASAPRPAPFRLRVVKRHTLG-YDGTAHVPIEALRRHIPDDLAADVAALLASGATF-- 415 RL A AP RLR + R G + + + + ALR+ I DLAAD+ ALL GAT Sbjct 363 SRLTGA---APLRLRYLPRTGAGPINKSGYPAVGALRKRIAADLAADLVALLDGGATLDV 419 Query 416 --AGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 R V DIAV+V + +AL AG+P++ G VF + AA+ WL +L+A Sbjct 420 GGTTRLVEPGDIAVLVRTNAQITVVHDALDRAGVPSVLAGGASVFTTPAAQHWLWILQAI 479 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQ 533 + P R+ VR AA T G TAE L A GD + V LRE G AA+F+ Sbjct 480 EQPHRADRVRLAALTPLLGHTAEELDAHGDDIVAEVGAQLRELGAVFAQSGFAALFERLS 539 Query 534 LAG-MGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWL-RRQAKAGAGPPE 591 G + R+L GER LTDL H+AQLL+ AA + LGL + WL R G + Sbjct 540 AVGALEARLLRVAAGERALTDLRHVAQLLNSAAVEQSLGLTAVTRWLTERMKDPTTGGVD 599 Query 592 HNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN--RNVRSDDILLYHDDGTRCLYIG- 648 +RRLDSDAAAVQI TV +KGL+FP+VYLP+A++ + + +LL+ DDG R L +G Sbjct 600 RSRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAKISKPSKLLLHDDDGRRILDVGG 659 Query 649 -GKDGGAQRRTVEGLNR--VEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLL 705 G G A RR NR E A + LRL YVA+TRA +V WWAP F L R++ Sbjct 660 PGSPGYADRR-----NRHDAEEAGEELRLLYVAVTRAMCGLVMWWAPAFTTPAAPLHRMI 714 Query 706 RGRRPGQSQVPDRCT----PRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVP 761 GR PGQ +VP + P V + + W A +V +G +P+P Sbjct 715 LGRLPGQREVPQKVIVPEDPIVAER-----LSAWGTAAPETVTVEAVGC-----EPIPRV 764 Query 762 GF----------EVRHFHRRIDTTWRRTSYSDLVRGS-EAVTVTSEPAAGGRADEVEIAV 810 G+ E F R +DT WRRTSYS L + +A V SE + DE + Sbjct 765 GWTPEREPSGDLEAARFRRLLDTRWRRTSYSALTASAHDAPAVGSEAEVEEKTDEPDEPP 824 Query 811 VAAP-GSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVD 869 + AP G A + S + LP GA+FG+LVHAV E D AAPDL E+ R D Sbjct 825 LHAPDGVTAGVPSTMNELPGGATFGTLVHAVFEIVDTAAPDLDDEVLRCCRDVIASTLSD 884 Query 870 VDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPD 929 VD AQ LA AL+P+ TPLG A A TL + D L ELDFE+PLAGGD S Sbjct 885 VDPAQ----LATALVPVLRTPLG-AGAERTLADLAPADLLAELDFELPLAGGDT--PSLT 937 Query 930 VSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVD 989 V L VG LL +HLP +DPL YAD + + L PLRGYL GSID VLRLPG RY+VVD Sbjct 938 VMLDGVGRLLRTHLPENDPLRSYADAVQT--LEPTPLRGYLTGSIDAVLRLPGPRYVVVD 995 Query 990 YKTNHL--GD-TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGG 1046 YKTN L GD T A Y + ML + YPLQALLY V LHR+LRWRQ Y P HLGG Sbjct 996 YKTNRLAQGDLTTAHYTRGSMAAEMLRAHYPLQALLYSVALHRYLRWRQPGYDPGLHLGG 1055 Query 1047 VLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 V YLFVRGM G TP GVF W PP AL+ LSDLL Sbjct 1056 VQYLFVRGMVGPDTPPG----CGVFDWAPPAALITELSDLL 1092 >gi|325673659|ref|ZP_08153350.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707] gi|325555680|gb|EGD25351.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707] Length=1106 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/1127 (45%), Positives = 631/1127 (56%), Gaps = 83/1127 (7%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+L PLP+ TTVLEASAGTGKT+A+ GL R++AE L ++LL+TF+RAA++ELR Sbjct 12 FDLFAPLPQ--GTTVLEASAGTGKTYAIVGLAARFVAEEGIDLSQLLLVTFSRAATKELR 69 Query 64 ERVRGQIVEAVGALQGDAP---PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ER R + A L A LV HL DAE A++R RL AL++FDA TI T Sbjct 70 ERTRERFASAAAGLADPAAARVSKDPLVAHLADTDDAEIARRRRRLMQALSDFDAGTIVT 129 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH FC +L LG+AGD D L E DLV+E++ D +L F ++ L A+A A Sbjct 130 THSFCQRMLDGLGIAGDRDPDAVLVEEAEDLVSEVIADLFLHRFACADSR-TLRPADARA 188 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 A A + DP + L P D E G++A + FA V +E +RRK + F+DL L Sbjct 189 AARAAIFDPQSVLAPEDAE-GTRAGDAVAFATAVRQETQRRKRLAGIRDFDDLPALLHGV 247 Query 241 LEAAD--SPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L + A R+R+R+R+VLVDEFQDTDP QW +L AF HS L+L+GDPKQAIY F Sbjct 248 LTDPEHGEAACRRVRDRYRVVLVDEFQDTDPQQWGILRAAFHGHSTLVLVGDPKQAIYAF 307 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG ++ +YL AAG+A + L NWRSD LV +L + A LGH DIVV A G Sbjct 308 RGAEVLSYLDAAGSAHSHQELTTNWRSDADLVAALGHLHGGAALGHRDIVVHPVSAAKQG 367 Query 359 HRLASAPRPAPFRLRVVKRHTLG-YDGTAHVPIEALRRHIPDDLAADVAALLASGATF-- 415 RL A AP RLR + R G + + + + ALR + D+AAD+ LL SGAT Sbjct 368 SRLQGA---APLRLRYLSRAGAGRLNNSGYPAVGALRSRVAADVAADIVELLGSGATLEL 424 Query 416 --AGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 RPV D+A++ + R AL G+P++ G T VF + AA WL +L+A Sbjct 425 NGVTRPVEPGDVAILAGTNAQIALVREALDRVGVPSVLAGGTSVFETPAATQWLQVLQAL 484 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQ-AA 532 + P R VR AA T G TA + A D + RV G LRE A G AA+F+ A Sbjct 485 EQPHRPDRVRLAALTPLIGWTAADVDARSDEVVARVGGQLRELATVFAQSGFAALFERLA 544 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLR---RQAKAGAGP 589 +G+ R+L+ GER LTDL HI QLL A E LGL L WL + K+G G Sbjct 545 AESGLEARLLTVASGERTLTDLRHIGQLLGAVAVDESLGLTALTGWLTDRIKDPKSGGG- 603 Query 590 PEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN--RNVRSDDILLYHDDGTRCLYI 647 + +RRLDSDAAAVQI TV +KGL++PIVY+PF ++ R + +LL+ + G R L I Sbjct 604 -DRSRRLDSDAAAVQIATVHASKGLEYPIVYVPFGWSTGRYADPNRLLLHDEHGRRILDI 662 Query 648 GGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRG 707 GG +G EAA ++LRL YVALTRAQ Q+V WWAP + L R+L G Sbjct 663 GG-EGSPGYGDRRRRRDAEAAGEDLRLLYVALTRAQCQLVLWWAPAYSTNEAPLHRMLFG 721 Query 708 RRPGQSQVPDRC----TPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGF 763 R PG+S VP + P V ++ +W A +VE +GA P+P P + Sbjct 722 REPGESDVPQKVGVPEDPMVAEQ-----LTRWAQAAPVTVEVQAVGA-----DPIPQPSW 771 Query 764 EVRH----------FHRRIDTTWRRTSYSDLVRGSE---AVTVTSEPAAGGRADEVEIAV 810 F R +D WRRTSY+ L + VT +E E + Sbjct 772 TPPQEETGELAAAVFRRELDAGWRRTSYTALTASAHEHPGVTSEAEEPEIEDEPEEPALI 831 Query 811 VAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDV 870 AAP G + S + +P GA FG+LVH +LE D AA DL EL R V Sbjct 832 TAAPVEG--IPSTMNDMPYGAVFGTLVHEILEHVDTAADDLETELVRHCRE-----AVAA 884 Query 871 DHAQLAP-ELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSP- 928 +Q+ P LA ALLP+ TPL A TL I RDRL ELDFE+PLAGGD P Sbjct 885 RMSQVDPVALADALLPVLRTPL---AGGGTLADITPRDRLPELDFELPLAGGD----DPA 937 Query 929 --DVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLP---GQ 983 V+L + +LL HLP DD L+PYADRL A L PLRGYL GSID VLRL G Sbjct 938 VLTVTLHRIVDLLRKHLPPDDVLAPYADRL--ATLDPTPLRGYLTGSIDAVLRLSGPDGP 995 Query 984 RYLVVDYKTNHLGD---TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAP 1040 R+++VDYKTN + T AD+ E + M+ S YPLQALLY V LHR+LRWR Y P Sbjct 996 RFVIVDYKTNRIAPGEVTTADFTREAMAGEMMRSHYPLQALLYAVALHRYLRWRLPGYTP 1055 Query 1041 ARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 HLGGV YLFVRGM G TP AGVF W+PP ALVV LSDLL Sbjct 1056 ETHLGGVQYLFVRGMVGPDTP----DGAGVFDWDPPAALVVELSDLL 1098 >gi|312139063|ref|YP_004006399.1| exodeoxyribonuclease v beta subunit recb [Rhodococcus equi 103S] gi|311888402|emb|CBH47714.1| exodeoxyribonuclease V beta subunit RecB [Rhodococcus equi 103S] Length=1103 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/1125 (45%), Positives = 633/1125 (57%), Gaps = 82/1125 (7%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+L PLP+ TTVLEASAGTGKT+A+ GL R++AE L ++LL+TF+RAA++ELR Sbjct 12 FDLFAPLPQ--GTTVLEASAGTGKTYAIVGLAARFVAEEDVDLSQLLLVTFSRAATKELR 69 Query 64 ERVRGQIVEAVGALQGDAPPSGE---LVEHLLRGSDAERAQKRSRLRDALANFDAATIAT 120 ER R + A L LV HL DAE A +R RL AL++FDA TI T Sbjct 70 ERTRERFASAAAGLADPIAARASEDPLVAHLADTDDAEIALRRRRLMQALSDFDAGTIVT 129 Query 121 THEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALA 180 TH FC +L LG+AG+ D L E DLV E++ D +L F R ++ L A+A A Sbjct 130 THSFCQRMLDGLGIAGERDPDAVLVEEAEDLVAEVIADLFLHRFARADSR-TLRPADARA 188 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 A A + DP + L P D E G++A + FA V +E +RRK + F+DL L Sbjct 189 AARAAIFDPQSVLAPEDAE-GTRAGDAVAFATAVRQETQRRKRLSGIRDFDDLPALLHGV 247 Query 241 LEAAD--SPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L + A R+R+R+R+VLVDEFQDTDP QW +L AF HS L+L+GDPKQAIY F Sbjct 248 LTDPEHGEAACRRVRDRYRVVLVDEFQDTDPQQWGILRAAFHGHSTLVLVGDPKQAIYAF 307 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG ++ +YL A G+A + L NWRSD LV +L + A LGH DIVV A Sbjct 308 RGAEVLSYLDAVGSAHSHQELTTNWRSDADLVAALGHLHGGAALGHRDIVVHPVSAAKQV 367 Query 359 HRLASAPRPAPFRLRVVKRHTLG-YDGTAHVPIEALRRHIPDDLAADVAALLASGATF-- 415 RL A AP RLR + R G + + + + ALR + D+AAD+ LL SGAT Sbjct 368 SRLHGA---APLRLRYLSRAGAGRLNNSGYPAVGALRSRVAADVAADIVELLGSGATLEL 424 Query 416 --AGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 RPV D+A++ + R AL G+P++ G T VF + AA WL +L+A Sbjct 425 NGVTRPVEPGDVAILAGTNAQIALVREALDRVGVPSVLAGGTSVFETPAATHWLQVLQAL 484 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQ-AA 532 + P R VR AA T G TA + A D + RV G LRE A G AA+F+ A Sbjct 485 EQPHRPDRVRLAALTPLIGWTAADVDARSDEVVARVGGQLRELATVFAQSGFAALFERLA 544 Query 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLR---RQAKAGAGP 589 +G+ R+L+ GER LTDL HI QLL A E LGL L WL + K+G G Sbjct 545 AESGLEARLLTVAAGERTLTDLRHIGQLLGAVAVDESLGLTALTGWLTDRIKDPKSGGG- 603 Query 590 PEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN--RNVRSDDILLYHDDGTRCLYI 647 + +RRLDSDAAAVQI TV +KGL++PIVY+PF ++ R + +LL+ + G R L I Sbjct 604 -DRSRRLDSDAAAVQIATVHASKGLEYPIVYVPFGWSTGRYADPNRLLLHDEHGRRILDI 662 Query 648 GGKDG---GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRL 704 GG+ G +RR + EAA ++LRL YVALTRAQ Q+V WWAP + L R+ Sbjct 663 GGEGSPGYGDRRRQRDA----EAAGEDLRLLYVALTRAQCQLVLWWAPAYSTNEAPLHRM 718 Query 705 LRGRRPGQSQVPDRC----TPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPV 760 L GR PG++ VP + P V ++ +W A +VE +GA P+P Sbjct 719 LFGREPGEADVPQKVGVPEDPMVAEQ-----LTRWAEAAPVTVEVQAVGA-----GPIPQ 768 Query 761 PGFEVRH----------FHRRIDTTWRRTSYSDLVRGS-EAVTVTSEPAAGGRADEVEIA 809 P + F R +D WRRTSY+ L + E VTSE DE E Sbjct 769 PSWTPPQEETGELAAAVFARVLDAGWRRTSYTALTASAHEHPGVTSEAEEPEIEDEPEEP 828 Query 810 VVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVD 869 + A + S + +P GA FG+LVH +LE D AA DL AEL R V Sbjct 829 ALIAAAPALGIPSTMNDMPYGAVFGTLVHEILEHVDTAAADLEAELVRHCRE-----AVA 883 Query 870 VDHAQLAP-ELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSP 928 +Q+ P LA ALLP+ TPL A TL I RDRL ELDFE+PLAGGD P Sbjct 884 ARMSQVDPVALADALLPVLRTPL---AGGGTLADITPRDRLPELDFELPLAGGD----DP 936 Query 929 ---DVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRY 985 V+L + +LL +HLP DD L+PYADRL A L PLRGYL GSID VLRL G R+ Sbjct 937 AVLTVTLHRIVDLLRNHLPADDVLAPYADRL--ATLEPTPLRGYLTGSIDAVLRLEGPRF 994 Query 986 LVVDYKTNHLGD---TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPAR 1042 ++VDYKTN + T AD+ E + M+ S YPLQALLY V LHR+LRWR Y PA Sbjct 995 VIVDYKTNRIAPGEVTTADFTRESMAGEMMRSHYPLQALLYAVALHRYLRWRLPGYDPAT 1054 Query 1043 HLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNPPTALVVALSDLL 1087 HLGGV YLFVRGM G TP AGVF W+P ALVV LSDLL Sbjct 1055 HLGGVQYLFVRGMVGPDTP----DGAGVFDWDPSAALVVELSDLL 1095 >gi|296130268|ref|YP_003637518.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109] gi|296022083|gb|ADG75319.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109] Length=1148 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/1153 (44%), Positives = 643/1153 (56%), Gaps = 83/1153 (7%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 FE+ GPLP TTVLEASAGTGKTF +A L RY+AE A L E+LL+TF R A+ ELR Sbjct 5 FEVCGPLP--AGTTVLEASAGTGKTFTIAALAARYVAEGHALLPELLLVTFGRTATSELR 62 Query 64 ERVRGQIVEAVGALQGDAPPSGE--LVEHLLRGSDAERAQKRSRLRDALANFDAATIATT 121 +RVR ++V AL+ A + + LV HL DAE A++R RL AL+ DAATI TT Sbjct 63 DRVRARLVATERALRDPAARTSDDVLVRHLADVDDAELARRRDRLTVALSQVDAATITTT 122 Query 122 HEFCGSVLKSLGV---AGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEA 178 H FC +L++LG G L + DL E+VDD YLA + + P LT A+A Sbjct 123 HGFCQQMLRALGTTTGGGVVEPGATLVPDVADLEAEVVDDLYLAAYAGAD-QPVLTVADA 181 Query 179 LALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLA 238 +A A V D A L P D PG+ R R A V E+ RR+ ++DLL L Sbjct 182 REVARAAVSDHAALLAPDDAPPGTAPDHRYRLARAVRHEVVRRRRAAHVVDYDDLLTLLR 241 Query 239 TALE--AADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIY 296 AL A + A +R+R +R+V+VDEFQDTD +QW++L AF H L+LIGDPKQAIY Sbjct 242 DALTDPATGAAAAERVRAPYRVVMVDEFQDTDQVQWQILRTAFHGHRTLVLIGDPKQAIY 301 Query 297 GFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHH 356 FRG D+HTYL+A G A TLG +WR+D +++ L ++ A LG IVV +A H Sbjct 302 AFRGADVHTYLEARGVA-TTATLGRSWRTDAPVLDGLAHLMGGAALGDPRIVVHPVEAAH 360 Query 357 AGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFA 416 RL P P +R V R +G G+A ++ +R + D+AA V L Sbjct 361 TERRLDGGP---PVLVRRVTRRAVGA-GSAAPKVDTVRSVVHRDVAARVVLTLTHSRLRD 416 Query 417 G---RPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAF 473 G RPV+ D+AV+ + DA A R ALA G+PA+ +G + VF + AA+DWL LL A Sbjct 417 GDAWRPVLPGDVAVLARRNADALAVREALAAVGVPAVVSGLSSVFTTAAARDWLVLLSAL 476 Query 474 DAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQ 533 A + V AAA T F G A LA DA + +A +R W+ +GVAA+ QA Sbjct 477 AATGDTARVAAAALTPFVGWDATRLAGASDAQREDLADRMRTWSHVLAGQGVAALLQATA 536 Query 534 LAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGA--GPPE 591 AG+ R+ ++ GER LTD+ H+ ++LH AA LG L +WLR + A E Sbjct 537 AAGLHERLAARVDGERVLTDVRHVGEVLHAAARDAGLGAAALTEWLRARIDEAAVDYAEE 596 Query 592 HNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNV-RSDDILLYH-DDGTRCLYIGG 649 +RRL++DAAAVQ++TV AKGL+FP+V +PFA++R V R +L YH DDGTR L++GG Sbjct 597 RSRRLETDAAAVQVVTVHAAKGLEFPVVMVPFAWDRWVPRDPSVLRYHDDDGTRRLHVGG 656 Query 650 KDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRR 709 + G ++ E A ++LRL YVALTRA SQVV WWAP+ +G + RL+ G R Sbjct 657 R-GSPGYDEARARHQAEEAGEDLRLAYVALTRASSQVVLWWAPSTVSASGAVGRLVLGAR 715 Query 710 PGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPG----FEV 765 PD P D+QA A F A G +V + A + + PV G EV Sbjct 716 DADGLPPD-TVPVPRDDQAAAGFDALAAGSGGTVVHETVDAAPPVVRWEPVRGEPGPLEV 774 Query 766 RHFHRRIDTTWRRTSYSDLVRGSEAV-----------TVTSE-----------------P 797 R +D TWRRTSYS + + VT E P Sbjct 775 ARLGRGVDLTWRRTSYSGITAAAHDAGPAGPSVPDRPGVTDEPEDPGIQDETDGPAPTPP 834 Query 798 AAGGRADEVEIAVVAAPGSGADLT-------SPLAALPSGASFGSLVHAVLETADPAAPD 850 G DE ++AV+AA L SPLA LP G +FG+LVH VLE D AA D Sbjct 835 PHAGAGDEPDLAVLAATTPDPALVAALRAVRSPLADLPGGTAFGTLVHHVLENVDTAAAD 894 Query 851 LAAELEAQVRRHAPWWTVDVDHAQLAPE-LARALLPMHDTPLGPAAAALTLRQIGVRDRL 909 L EL A+ A L P+ LA ALLP TP GP TL Q+ DRL Sbjct 895 LRGELRARCAEAA----GGGGGLGLDPDALADALLPSMHTPAGPLLGGRTLAQVPPHDRL 950 Query 910 RELDFEMPLAGGDLR--GRSPDVSLADVGELLASHLPGDDPLSPYADRLG--SAGLGDQP 965 ELD E+PLAGGDL GR P +LADV +LL +HL DDP + YA RL A G +P Sbjct 951 AELDLELPLAGGDLDPAGRRP-ATLADVADLLDAHLDPDDPFAAYAGRLRWLHADPGTRP 1009 Query 966 --LRGYLAGSIDVVLRLP---GQRYLVVDYKTNHLGD-----TAADYGFERLTEAMLHSD 1015 LRGYL GSID VLR+ RY+VVDYKTN L TA Y E + AML + Sbjct 1010 AALRGYLTGSIDAVLRVDVDGDTRYVVVDYKTNRLAPPDDPLTAWHYRPEAMRTAMLDAH 1069 Query 1016 YPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAGHPAGVFTWNP 1075 YPLQ LLY V LHRFLRWR Y P RHLGG +YLFVRGMCG TPV G P GV +W P Sbjct 1070 YPLQLLLYAVGLHRFLRWRLPGYDPDRHLGGGVYLFVRGMCGPDTPVVDGSPCGVVSWRP 1129 Query 1076 PTALVVALSDLLD 1088 P +LVV +S LLD Sbjct 1130 PASLVVGVSALLD 1142 >gi|336321365|ref|YP_004601333.1| Exodeoxyribonuclease V [Cellvibrio gilvus ATCC 13127] gi|336104946|gb|AEI12765.1| Exodeoxyribonuclease V [Cellvibrio gilvus ATCC 13127] Length=1153 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/1159 (44%), Positives = 625/1159 (54%), Gaps = 91/1159 (7%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F++ GPLP T VLEASAGTGKT+ +A L RY+AE L E++L+TF RAA+ ELR Sbjct 7 FDVRGPLPGV-ETVVLEASAGTGKTWTIASLAVRYVAELGVRLPELMLVTFGRAATTELR 65 Query 64 ERVRGQIVEAVGALQGDA--PPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATT 121 +RVRG++VE L+ S E+V L AE +R+RL ALA FDAATI TT Sbjct 66 DRVRGRLVEVERGLRSPVARTSSDEVVALLADADPAEVTARRTRLAAALAEFDAATITTT 125 Query 122 HEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALAL 181 H FC +L LG D D L + DL E+ DD YL + T P +T A + Sbjct 126 HGFCQQMLAMLGTTSDVDHDATLLPDVADLEAEVADDLYLRTYA-ATTTPLVTVDTAREV 184 Query 182 ALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATAL 241 A V D A L P D EPG+ R + A E+ RRK ++DLL L AL Sbjct 185 MHAAVSDHAAVLEPGDAEPGTAPHHRFKLAEVARAEMRRRKRAAGVVDYDDLLTLLRDAL 244 Query 242 -EAADSPARDRMRERWRIV-LVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFR 299 + PA V +VDEFQDTDP+QW++L AF L+LIGDPKQAIY FR Sbjct 245 VDPVTGPAARARVRAAFRVVMVDEFQDTDPVQWQILRSAFHGERTLVLIGDPKQAIYAFR 304 Query 300 GGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGH 359 G D+ TYL AA A R TL N R+D A++ L+ VL A LG IVV +A H G Sbjct 305 GADVTTYLVAAAEAR-RATLARNHRADPAVLAGLRPVLEGAALGDPRIVVHPVEAQHRGR 363 Query 360 RLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLAS-------- 411 RLA P P LR V R LG P+ A+R + D+AA V L + Sbjct 364 RLAGGP---PVVLRQVTRTALGTRPGRVPPVGAVRDLLYADVAAQVVETLTTCRVPDDGT 420 Query 412 -------------GATFAGR------PVVAADIAVIVEHHKDARACRNALAEAGIPAIYT 452 G AGR V +IAV+V ++DA+A + ALAEAG+PA+ + Sbjct 421 APHGTAADGTAPDGTALAGRHDPPLRAVRPGEIAVLVRRNRDAQAVQRALAEAGVPAVIS 480 Query 453 GDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGT 512 G VF +++A+ WL LL A P SGL AA T F G TA LA D DR+A Sbjct 481 GLASVFGTRSAQHWLTLLSALARPDDSGLAAGAALTPFLGWTAAELALADDRARDRLAER 540 Query 513 LREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGL 572 +R WA GVAA+ +AA GM RV++ GER+LTDL H+ + LH A E LG Sbjct 541 VRTWAATLASHGVAALLEAAAATGMRARVVAAVDGERELTDLRHVGEALHAVAVHESLGA 600 Query 573 PGLRDWLR-RQAKAGAG-PPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVR 630 L +WLR R +AG E +RRL +DAAAVQ++TV +KGLQFP+ +PFA++ V Sbjct 601 SALLEWLRARIEEAGRDYAEERSRRLQTDAAAVQVITVHASKGLQFPVTLVPFAWDTWVP 660 Query 631 SDD-ILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVE-AAHDNLRLTYVALTRAQSQVVA 688 S+ +L +H D R L++GG G+ + E A + LRLTYVALTRA+SQVV Sbjct 661 SEPAVLRFHRDDERTLHVGGP--GSPGYAAGAVAHAEDDAGEQLRLTYVALTRARSQVVV 718 Query 689 WWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEA-AGGPSVEESV 747 WWAP+ + LSRLL G R PD P TDE A FA+ A GG V + V Sbjct 719 WWAPSRNSERSPLSRLLLGAR-TPDGTPDAVVPVPTDEDATVRFAELAARTGGDLVLQVV 777 Query 748 IGARSSLEKPVPV---PGFEVRHFHRRIDTTWRRTSYSDLVRGS---EAVTVTSEPAAGG 801 R+ P P E+ R +D WRRTS++ L + +SEP G Sbjct 778 DAPRARARWSPPATARPALELARLDRTVDLLWRRTSFTGLTAAAYDHRPHAPSSEPDDPG 837 Query 802 RADEVEIAVV---AAPGSGA-------------DLTSPLAALPSGASFGSLVHAVLETAD 845 DE + V A P +G SPLA LP+G +FG+LVH VLE D Sbjct 838 VQDEPDGPVTGTSALPAAGPVTPAQDDEERVARACASPLADLPAGTAFGTLVHHVLEHVD 897 Query 846 PAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPE-LARALLPMHDTPLGPAAAALTLRQIG 904 APDL AE+ + P ++ +D PE LA LLP TPLGP TL + Sbjct 898 TTAPDLGAEVALRCAEADPGGSLGID-----PEVLAARLLPALRTPLGPLMGGRTLADVP 952 Query 905 VRDRLRELDFEMPLAGGDLR---GRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGL 961 DRL ELDFE+PLAGGD R GR +L V +LL +HL DDP + YA RL L Sbjct 953 PGDRLAELDFELPLAGGDDRAAPGRP--ATLRAVADLLRAHLTADDPFAGYAARLEDPEL 1010 Query 962 GDQPLRGYLAGSIDVVLRLP----GQRYLVVDYKTNHLGD-----TAADYGFERLTEAML 1012 PLRGYLAGSID VLR+P G Y+VVDYKTN LG TA Y L +AM+ Sbjct 1011 AGGPLRGYLAGSIDAVLRVPAPDGGHTYVVVDYKTNRLGPWDEPLTAWHYRPSTLVDAMV 1070 Query 1013 HSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAATPVTAG----HPA 1068 YPLQ LLY LHRFLRWR RDY PARHLGG LYLFVRGM G TPV G PA Sbjct 1071 EHHYPLQLLLYSAALHRFLRWRVRDYDPARHLGGALYLFVRGMTGPGTPVLDGPGGPSPA 1130 Query 1069 GVFTWNPPTALVVALSDLL 1087 GV W PP ALV LSDLL Sbjct 1131 GVLAWRPPAALVTDLSDLL 1149 >gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V beta subunit [Kineococcus radiotolerans SRS30216] gi|151359478|gb|ABS02481.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans SRS30216] Length=1125 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/1133 (45%), Positives = 618/1133 (55%), Gaps = 72/1133 (6%) Query 4 FELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELR 63 F+L GPLP TTVLEASAGTGKT+ +AGLVTRY+AE AT+D++L++TF RAA+ ELR Sbjct 11 FDLAGPLPV--ATTVLEASAGTGKTYTIAGLVTRYVAEGVATVDQLLVVTFGRAATAELR 68 Query 64 ERVRGQIVEAVGALQGDAPP--SGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATT 121 +RVR ++V AL A S + V L DA A+ R+RL +ALA FD AT+AT Sbjct 69 DRVRERLVATRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFDTATVATI 128 Query 122 HEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETD-PELTYAEALA 180 HEFC VL SLG A D L E + DLV E+ DD YL R P AL Sbjct 129 HEFCRQVLTSLGTAADVDPSATLVEDVDDLVEEVCDDLYLRFAVRPGAGVPPFDRPTALR 188 Query 181 LALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATA 240 +A A VD A++ PPD PGS +R+RFA V E+E RK R GF+DLL RL A Sbjct 189 IARAAVDRADARIEPPDTLPGSPENLRVRFALGVRREVEARKRSRRVLGFDDLLTRLRDA 248 Query 241 LE--AADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGF 298 L A A +R+R R+ +VLVDEFQDTD +QW VL AF L+LIGDPKQAIY F Sbjct 249 LTDPVAGPVACERLRRRYSVVLVDEFQDTDAVQWDVLRTAFHGQGPLVLIGDPKQAIYAF 308 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RG D+ +YL AAG A TL N RSD ++ +LR A LG IVVR DA HA Sbjct 309 RGADVRSYLDAAGVAGTTATLSTNHRSDPLVLAGTAALLRGAALGEQRIVVRPVDAAHAA 368 Query 359 HRL---ASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATF 415 L + AP PAP R+RV++R L G P+ R + D AA V A+L G Sbjct 369 AALVDGSGAPDPAPVRVRVLERDGLPTTGRGLPPVGEARAVVARDTAAQVVAVLREGLRV 428 Query 416 -----AGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLL 470 R + A D+AV+V A + L G+P + + VFA+ AA++W+ LL Sbjct 429 RPRDGGERDLEAGDVAVLVRTGAQAALVQEELRRRGVPCVLSRGPSVFATPAAQEWISLL 488 Query 471 EAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVF- 529 EA + P R+ VR A + F G +A L A GD TD ++ LREW RGVA F Sbjct 489 EAVEQPHRAPRVRRVALSSFVGRSAAELDAAGDRATDELSVQLREWGAVLTERGVAGAFA 548 Query 530 ---QAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLH-EAAHRERLGLPGLRDWLRRQAKA 585 +A +L G R+L GGER LTDL HIA++LH E+A G+ L WLR + + Sbjct 549 VVGEAHRLPG---RLLGVEGGERRLTDLRHIAEVLHRESALNPGGGVSSLLSWLRARVEE 605 Query 586 GAGPP--EHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNR---NVRSDDILLYH-D 639 AG E +RRLD+D AAVQI TV +KGL+F +V +PF ++ D + + H Sbjct 606 AAGDADRERSRRLDTDRAAVQIATVHTSKGLEFEVVCVPFGWDAPGGGGSKDRLPVAHAP 665 Query 640 DGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNG 699 DG R L++GG + E + LRL YVA+TRA S+++ WWAP+ + G Sbjct 666 DGPRALHVGGPGAPGYAAACRAAD-TEDLGEELRLLYVAVTRAVSRLLVWWAPSQNTEEG 724 Query 700 GLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKP-- 757 L RLL P VP+ P DE + A AGGP E+V L P Sbjct 725 ALHRLLLAEDP--LAVPE-SLPVPGDEVLSSRLASRFPAGGPVAVETV-----PLRTPED 776 Query 758 ------VPVPGFEVRHFHRRIDTTWRRTSYSDLVRG-----SEAVTVTSEPAAGGRADEV 806 P V F +D WRRTSYS L RG V + P DEV Sbjct 777 RLPAVAAPAAHLAVARFRGAVDLGWRRTSYSGLTRGVHDGPGAGHAVLAGPEVDVTDDEV 836 Query 807 ------EIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVR 860 A P SP+A LP+G FG+LVHAVLE DPA PD A L A R Sbjct 837 DLDAAGATAADDDPRGWRATVSPMADLPAGTGFGTLVHAVLEGFDPAVPDRTAHLAALAR 896 Query 861 RHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAG 920 Q A +LA AL P+ T LGP A L V DRL ELDFEMPLAG Sbjct 897 EQF--------DPQPAEDLALALGPVLRTGLGPLAGGAALEGFPVADRLAELDFEMPLAG 948 Query 921 GDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL 980 GD G + + DV LL HLP DP+ YAD L LG++ LRGYL GSID VLR Sbjct 949 GDAAGPA-GPRVGDVAGLLRRHLPPGDPVHRYADALEDPVLGEEGLRGYLTGSIDAVLRR 1007 Query 981 PGQRYLVVDYKTNHLGD-----TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQ 1035 +LVVDYKTN LG TA Y E L EA+L + YPLQALLY V LHRFLRWRQ Sbjct 1008 REGGFLVVDYKTNRLGAPGEILTAWHYRREALDEAVLAAHYPLQALLYCVALHRFLRWRQ 1067 Query 1036 RDYAPARHLGGVLYLFVRGMCGAATPVTA-GHPAGVFTWNPPTALVVALSDLL 1087 Y PA HLGGVLYLF+RGMCG P G P GV++W PP LVV LS+LL Sbjct 1068 PGYDPAVHLGGVLYLFLRGMCGPEVPAGEDGVPPGVWSWRPPAGLVVDLSELL 1120 >gi|309812345|ref|ZP_07706100.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185] gi|308433650|gb|EFP57527.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185] Length=1127 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/1136 (43%), Positives = 626/1136 (56%), Gaps = 89/1136 (7%) Query 3 RFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASREL 62 +F++ P+P TT++EASAGTGKT+ L+ LVTR +AE L+E+L++TF+RAAS+EL Sbjct 23 QFDVTAPIPH--GTTLIEASAGTGKTWTLSALVTRLVAEEGLPLEELLVVTFSRAASQEL 80 Query 63 RERVRGQIVEAVGAL-QGDAPPSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATT 121 RERVR Q+ + L Q G LV L A++ RL ALA+FD+A IAT Sbjct 81 RERVREQLERVLTRLRQAPHDDDGVLVAALRSDDPGVLAERCDRLARALASFDSALIATI 140 Query 122 HEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDP--ELTYAEAL 179 H+FC VLK LGVAGD+ + L E T L E++DD Y+A R+ DP +L++ A Sbjct 141 HQFCHDVLKGLGVAGDSDSFATLVEDTTGLRDEVIDDLYVA---RRAQDPSFDLSHERAR 197 Query 180 ALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLAT 239 + V+ + A L P + S+ AV + FA + E RRK R ++DLL+ L T Sbjct 198 FIGHCVLTNTGAALDAPADD--SQRAV-IDFAEALRNEYARRKRRAGILEYDDLLVDLRT 254 Query 240 ALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHS-ALILIGDPKQAIYGF 298 AL A S AR+RMR RW +VLVDEFQDTDP+QW V + AFS +LIL+GDPKQAIYGF Sbjct 255 ALRATPSIARERMRARWSVVLVDEFQDTDPVQWEVFQTAFSEAGRSLILVGDPKQAIYGF 314 Query 299 RGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAG 358 RGGD+HTYL+A+ TA+ R TL N+RSD LV++L ++ + TL IV A Sbjct 315 RGGDVHTYLRASQTAEHRSTLPTNYRSDGPLVDALGRLMGNVTLSPG-IVAHPVTADRET 373 Query 359 HRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGR 418 RL AP +R V L P R + DLA + LLASG TFA Sbjct 374 SRLVG--DAAPIEMRWVNGDPL--------PAAGARSAVAHDLAVRASELLASGTTFADA 423 Query 419 PVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQR 478 P+ +AV+ H R L AGIPA+ V S A WL LL A + P R Sbjct 424 PLAPHHMAVLARTHAQLLQVREQLRAAGIPAVMMSGDSVLRSSAGAWWLELLLALEQPHR 483 Query 479 SGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMG 538 + VRAA T G + A A D A + A G+ AV A + GM Sbjct 484 AQRVRAACLTPLIGWDVARIDALETADADESAELVHALAAQFDEGGIPAVMDALRARGML 543 Query 539 RRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEHNR--RL 596 R+L++ GGERD+TD+ H AQLL E G+ L W++ Q+ A A R RL Sbjct 544 ERLLARVGGERDVTDIEHCAQLLTERQLATGGGIAALVAWVQEQSAADAKVTADARLMRL 603 Query 597 DSDAAAVQIMTVFVAKGLQFPIVYLPFAFNR--NVRSDDILLYHDDGTRCLYIGGKDGGA 654 DSDA AV + T+ +KGLQ+P+V+ P +NR RS ++Y + G + G + Sbjct 604 DSDAQAVTLSTIHASKGLQYPVVFAPTLWNRWDKDRSVPDIVYTEAGRVVSFDPGVINAS 663 Query 655 QRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVN-GGLSRLLRGRRPGQS 713 + + EA+ + +RL YVA+TRAQS+VV WWAPT + L RLL G+ + Sbjct 664 R-------SHEEASGEEMRLAYVAMTRAQSKVVLWWAPTARSTSKSALHRLLFGQAADPA 716 Query 714 QVPDRCTPRVTD-----------------EQAWAVFAQWEAAGGPSVEESVIGARSSLEK 756 + + T R +D ++ + + W ++ E V GA K Sbjct 717 SLGELLTRRTSDKGSEVITTTEQNGLPRGDKLFEILQTWAEHRAFTLTEVVPGA-----K 771 Query 757 PVPV------PGFEVRHFH-RRIDTTWRRTSYSDLV----RGSEAVTVTSEP-AAGGRAD 804 P PV + F R +DT+WRRTSYS L R E V SEP A G + D Sbjct 772 PTPVHVAVSSDEMNLSRFDPRLVDTSWRRTSYSALSAAGERADELAGVVSEPDAVGAQLD 831 Query 805 -EVEIAVVAAPGS----GADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQV 859 +V++A+ AP + GAD SP+ P GA+FGSLVH VLE AD A DL AEL + Sbjct 832 PDVDLALPQAPSAPDVPGADALSPMHDQPLGATFGSLVHGVLEEADFQADDLDAELHRHI 891 Query 860 RRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLA 919 W DVD L AL + TP GP A + LR+I + DR+ E+DFE+PL Sbjct 892 VEQQLRWPADVD----VDALVEALRGVLATPFGPLADDVCLRRIAMSDRIAEMDFEIPLG 947 Query 920 GGDL-RGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVL 978 GGD R+ + ADV L HLP DDPL PYAD L ++ LG++ LRGYL GSID+ Sbjct 948 GGDTPHARATLRAFADV---LRRHLPEDDPLRPYADHLEASLLGEETLRGYLTGSIDLTF 1004 Query 979 RLPGQRYLVVDYKTNHLGD-----TAADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRW 1033 R G RY VVDYKTN LGD T + YG E L AM HS YPLQA+LY VVLHR+LRW Sbjct 1005 R-HGGRYFVVDYKTNRLGDPDAPLTLSAYGPEALAAAMNHSSYPLQAILYAVVLHRYLRW 1063 Query 1034 RQRDYAPARHLGGVLYLFVRGMCGAATPV-TAGHPAGVFTWNPPTALVVALSDLLD 1088 R Y P HLGGV+YL+VRGM GA TP P GVFTW PP ALVVALS ++D Sbjct 1064 RLPGYDPETHLGGVMYLYVRGMAGADTPRGDDDTPFGVFTWRPPAALVVALSAIID 1119 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2753750834910 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40