BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0639 Length=238 Score E Sequences producing significant alignments: (Bits) Value gi|308375217|ref|ZP_07443128.2| transcription antitermination pr... 479 2e-133 gi|15607779|ref|NP_215153.1| transcription antitermination prote... 477 6e-133 gi|240169413|ref|ZP_04748072.1| transcription antitermination pr... 422 2e-116 gi|289749142|ref|ZP_06508520.1| transcription antitermination pr... 412 3e-113 gi|183980992|ref|YP_001849283.1| transcription antitermination p... 405 2e-111 gi|118616514|ref|YP_904846.1| transcription antitermination prot... 403 1e-110 gi|41410209|ref|NP_963045.1| transcription antitermination prote... 395 3e-108 gi|15828020|ref|NP_302283.1| transcription antitermination prote... 390 9e-107 gi|342858862|ref|ZP_08715516.1| transcription antitermination pr... 389 2e-106 gi|296168428|ref|ZP_06850308.1| transcription antitermination pr... 387 1e-105 gi|254823017|ref|ZP_05228018.1| transcription antitermination pr... 384 8e-105 gi|333989302|ref|YP_004521916.1| transcription antitermination p... 381 4e-104 gi|145225693|ref|YP_001136371.1| transcription antitermination p... 362 3e-98 gi|315446044|ref|YP_004078923.1| transcription antitermination p... 362 3e-98 gi|336441164|gb|AEI54807.1| transcription antitermination protei... 359 1e-97 gi|336441158|gb|AEI54804.1| transcription antitermination protei... 359 2e-97 gi|111018977|ref|YP_701949.1| transcription antitermination prot... 352 2e-95 gi|336441162|gb|AEI54806.1| transcription antitermination protei... 352 4e-95 gi|120402246|ref|YP_952075.1| transcription antitermination prot... 348 4e-94 gi|226361072|ref|YP_002778850.1| transcription antitermination p... 347 1e-93 gi|336441166|gb|AEI54808.1| transcription antitermination protei... 345 4e-93 gi|169630973|ref|YP_001704622.1| transcription antitermination p... 345 4e-93 gi|108797896|ref|YP_638093.1| transcription antitermination prot... 345 4e-93 gi|118467542|ref|YP_885732.1| transcription antitermination prot... 343 1e-92 gi|312141016|ref|YP_004008352.1| transcription antitermination p... 340 1e-91 gi|325675347|ref|ZP_08155031.1| transcription antitermination pr... 340 1e-91 gi|126433559|ref|YP_001069250.1| transcription antitermination p... 339 2e-91 gi|336441160|gb|AEI54805.1| transcription antitermination protei... 334 6e-90 gi|54027090|ref|YP_121332.1| transcription antitermination prote... 333 2e-89 gi|226305205|ref|YP_002765163.1| transcription antitermination p... 331 6e-89 gi|302523949|ref|ZP_07276291.1| transcription termination/antite... 326 2e-87 gi|333918077|ref|YP_004491658.1| transcription antitermination p... 324 8e-87 gi|331699210|ref|YP_004335449.1| NusG antitermination factor [Ps... 324 9e-87 gi|256380624|ref|YP_003104284.1| NusG antitermination factor [Ac... 322 3e-86 gi|300782525|ref|YP_003762816.1| transcription antiterminator Nu... 321 7e-86 gi|343925625|ref|ZP_08765142.1| transcription antitermination pr... 319 2e-85 gi|296138474|ref|YP_003645717.1| NusG antitermination factor [Ts... 317 9e-85 gi|325003301|ref|ZP_08124413.1| NusG antitermination factor [Pse... 314 6e-84 gi|257054435|ref|YP_003132267.1| transcription antitermination p... 314 8e-84 gi|317509041|ref|ZP_07966672.1| transcription termination/antite... 308 4e-82 gi|326382994|ref|ZP_08204683.1| transcription antitermination pr... 308 5e-82 gi|262201104|ref|YP_003272312.1| transcription termination/antit... 304 8e-81 gi|296395107|ref|YP_003659991.1| NusG antitermination factor [Se... 303 1e-80 gi|134103300|ref|YP_001108961.1| putative transcription antiterm... 302 2e-80 gi|284992892|ref|YP_003411446.1| NusG antitermination factor [Ge... 296 1e-78 gi|258651255|ref|YP_003200411.1| NusG antitermination factor [Na... 296 2e-78 gi|317125904|ref|YP_004100016.1| transcription antitermination p... 287 1e-75 gi|271962615|ref|YP_003336811.1| transcription antiterminator-li... 281 5e-74 gi|269128551|ref|YP_003301921.1| NusG antitermination factor [Th... 280 1e-73 gi|72163058|ref|YP_290715.1| transcription antitermination prote... 279 3e-73 >gi|308375217|ref|ZP_07443128.2| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu007] gi|308376463|ref|ZP_07438920.2| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu008] gi|308347108|gb|EFP35959.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu007] gi|308351051|gb|EFP39902.1| transcription antitermination protein nusG [Mycobacterium tuberculosis SUMu008] Length=241 Score = 479 bits (1232), Expect = 2e-133, Method: Compositional matrix adjust. Identities = 238/238 (100%), Positives = 238/238 (100%), Gaps = 0/238 (0%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN Sbjct 4 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 63 Query 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW Sbjct 64 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 123 Query 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV Sbjct 124 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 183 Query 181 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI Sbjct 184 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 241 >gi|15607779|ref|NP_215153.1| transcription antitermination protein NusG [Mycobacterium tuberculosis H37Rv] gi|15840042|ref|NP_335079.1| transcription antitermination protein NusG [Mycobacterium tuberculosis CDC1551] gi|31791823|ref|NP_854316.1| transcription antitermination protein NusG [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=238 Score = 477 bits (1227), Expect = 6e-133, Method: Compositional matrix adjust. Identities = 237/238 (99%), Positives = 238/238 (100%), Gaps = 0/238 (0%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 +TTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN Sbjct 1 MTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 Query 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW Sbjct 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 Query 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV Sbjct 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 Query 181 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI Sbjct 181 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 >gi|240169413|ref|ZP_04748072.1| transcription antitermination protein NusG [Mycobacterium kansasii ATCC 12478] Length=238 Score = 422 bits (1086), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 223/238 (94%), Positives = 229/238 (97%), Gaps = 0/238 (0%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 +TTFDGDTSAGEAVDL EA Q+ APAEEVDPAAALKAELRSKPGDWYV+HSYAGYEN Sbjct 1 MTTFDGDTSAGEAVDLQEATTAQEVEAPAEEVDPAAALKAELRSKPGDWYVIHSYAGYEN 60 Query 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW Sbjct 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 Query 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 AAVRNTPGVTGFVGATSRPSAL+LDDVVKFLLPRG+ +KAAKGAASTAA AEAGGLERPV Sbjct 121 AAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGAAKKAAKGAASTAAVAEAGGLERPV 180 Query 181 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTF QVSKI Sbjct 181 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFSQVSKI 238 >gi|289749142|ref|ZP_06508520.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T92] gi|289689729|gb|EFD57158.1| transcription antitermination protein nusG [Mycobacterium tuberculosis T92] Length=205 Score = 412 bits (1058), Expect = 3e-113, Method: Compositional matrix adjust. Identities = 204/205 (99%), Positives = 205/205 (100%), Gaps = 0/205 (0%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 +TTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN Sbjct 1 MTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 Query 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW Sbjct 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 Query 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV Sbjct 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 Query 181 VEVDYEVGESVTVMDGPFATLPATI 205 VEVDYEVGESVTVMDGPFATLPATI Sbjct 181 VEVDYEVGESVTVMDGPFATLPATI 205 >gi|183980992|ref|YP_001849283.1| transcription antitermination protein, NusG [Mycobacterium marinum M] gi|183174318|gb|ACC39428.1| transcription antitermination protein, NusG [Mycobacterium marinum M] Length=237 Score = 405 bits (1042), Expect = 2e-111, Method: Compositional matrix adjust. Identities = 216/238 (91%), Positives = 222/238 (94%), Gaps = 1/238 (0%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 +TTFDGDTSAGEAVDL E D PAEEVDPA ALKAELRSKPG+WYVVHSYAGYEN Sbjct 1 MTTFDGDTSAGEAVDLQEPGIPADVEVPAEEVDPAVALKAELRSKPGEWYVVHSYAGYEN 60 Query 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW Sbjct 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 Query 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 AAVRNTPGVTGFVGATSRPSAL LDDVVKFLLPRG+ +K AK AASTAA AEAGGLERPV Sbjct 121 AAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAK-AASTAAVAEAGGLERPV 179 Query 181 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 +EVDYEVGESVTVMDGPFATLPATI+EVNAEQQKLKVLVSIFGRETPVELTF QVSKI Sbjct 180 LEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVELTFNQVSKI 237 >gi|118616514|ref|YP_904846.1| transcription antitermination protein NusG [Mycobacterium ulcerans Agy99] gi|118568624|gb|ABL03375.1| transcription antitermination protein, NusG [Mycobacterium ulcerans Agy99] Length=237 Score = 403 bits (1036), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 215/238 (91%), Positives = 221/238 (93%), Gaps = 1/238 (0%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYEN 60 +TTFDGD SAGEAVDL E D PAEEVDPA ALKAELRSKPG+WYVVHSYAGYEN Sbjct 1 MTTFDGDASAGEAVDLQEPGIPADVEVPAEEVDPAVALKAELRSKPGEWYVVHSYAGYEN 60 Query 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW Sbjct 61 KVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSW 120 Query 121 AAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV 180 AAVRNTPGVTGFVGATSRPSAL LDDVVKFLLPRG+ +K AK AASTAA AEAGGLERPV Sbjct 121 AAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGAAKKTAK-AASTAAVAEAGGLERPV 179 Query 181 VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 +EVDYEVGESVTVMDGPFATLPATI+EVNAEQQKLKVLVSIFGRETPVELTF QVSKI Sbjct 180 LEVDYEVGESVTVMDGPFATLPATINEVNAEQQKLKVLVSIFGRETPVELTFNQVSKI 237 >gi|41410209|ref|NP_963045.1| transcription antitermination protein NusG [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466107|ref|YP_883656.1| transcription antitermination protein NusG [Mycobacterium avium 104] gi|254776958|ref|ZP_05218474.1| transcription antitermination protein NusG [Mycobacterium avium subsp. avium ATCC 25291] gi|41399043|gb|AAS06661.1| NusG [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167394|gb|ABK68291.1| transcription termination/antitermination factor NusG [Mycobacterium avium 104] gi|336460569|gb|EGO39462.1| transcription termination/antitermination factor NusG [Mycobacterium avium subsp. paratuberculosis S397] Length=256 Score = 395 bits (1014), Expect = 3e-108, Method: Compositional matrix adjust. Identities = 215/256 (84%), Positives = 225/256 (88%), Gaps = 18/256 (7%) Query 1 VTTFDGDTSAGEAVDL------------------TEANAFQDAAAPAEEVDPAAALKAEL 42 +TTFDGD SAG+AVDL A + + PAEEVDPAAALKAEL Sbjct 1 MTTFDGDPSAGDAVDLRETDEATEAADEAAETTEDAAESAETQGEPAEEVDPAAALKAEL 60 Query 43 RSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNR 102 RSKPGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNR Sbjct 61 RSKPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNR 120 Query 103 KVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAK 162 KVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSAL+LDDVVKFLLPRG+T+K AK Sbjct 121 KVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALSLDDVVKFLLPRGATKKVAK 180 Query 163 GAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIF 222 GAASTAAAAEAGGLERP +EVDYEVGESVTVMDGPFATLPATISEVN EQQKLKVLVSIF Sbjct 181 GAASTAAAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIF 240 Query 223 GRETPVELTFGQVSKI 238 GRETPVELTF QVSK+ Sbjct 241 GRETPVELTFSQVSKL 256 >gi|15828020|ref|NP_302283.1| transcription antitermination protein NusG [Mycobacterium leprae TN] gi|221230497|ref|YP_002503913.1| transcription antitermination protein NusG [Mycobacterium leprae Br4923] gi|18202753|sp|Q9CBK0.1|NUSG_MYCLE RecName: Full=Transcription antitermination protein nusG gi|13093573|emb|CAC30860.1| transcription antitermination protein nusG [Mycobacterium leprae] gi|219933604|emb|CAR72002.1| transcription antitermination protein nusG [Mycobacterium leprae Br4923] Length=228 Score = 390 bits (1002), Expect = 9e-107, Method: Compositional matrix adjust. Identities = 197/211 (94%), Positives = 202/211 (96%), Gaps = 0/211 (0%) Query 28 PAEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTE 87 PA EVDPAAALKAELRSKPGDWYV+HSYAGYENKVKANLETRVQNLDVGD IFQVEVPTE Sbjct 18 PAAEVDPAAALKAELRSKPGDWYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTE 77 Query 88 EVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDV 147 EVTEIKNGQR+ VNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDV Sbjct 78 EVTEIKNGQRRLVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDV 137 Query 148 VKFLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISE 207 VKFLLP GS +K AKGA STAAAAEAGGLER ++EVDYEVGESVTVMDGPFATLPATISE Sbjct 138 VKFLLPSGSAKKDAKGAVSTAAAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISE 197 Query 208 VNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VNAEQQKLKVLVSIFGRETPVELTF QVSKI Sbjct 198 VNAEQQKLKVLVSIFGRETPVELTFSQVSKI 228 >gi|342858862|ref|ZP_08715516.1| transcription antitermination protein NusG [Mycobacterium colombiense CECT 3035] gi|342133103|gb|EGT86306.1| transcription antitermination protein NusG [Mycobacterium colombiense CECT 3035] Length=266 Score = 389 bits (999), Expect = 2e-106, Method: Compositional matrix adjust. Identities = 213/266 (81%), Positives = 222/266 (84%), Gaps = 28/266 (10%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAA----------------------------APAEEV 32 +TTFDGD SAG+AVDL E + A AEE Sbjct 1 MTTFDGDPSAGDAVDLKETDEAAQATDTSAGAEVTEATADEAAGETAEAAGASEETAEEA 60 Query 33 DPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 92 DPAAALKAELRSKPGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI Sbjct 61 DPAAALKAELRSKPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 120 Query 93 KNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLL 152 KNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSAL LDDVVKFLL Sbjct 121 KNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLL 180 Query 153 PRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQ 212 PRG+T+KAAKGAA+TAAAAE GGLERP +EVDYEVGESVTVMDGPFATLPATISEVN EQ Sbjct 181 PRGATKKAAKGAATTAAAAEVGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGEQ 240 Query 213 QKLKVLVSIFGRETPVELTFGQVSKI 238 QKLKVLVSIFGRETPVELTF QVSK+ Sbjct 241 QKLKVLVSIFGRETPVELTFSQVSKL 266 >gi|296168428|ref|ZP_06850308.1| transcription antitermination protein NusG [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896722|gb|EFG76357.1| transcription antitermination protein NusG [Mycobacterium parascrofulaceum ATCC BAA-614] Length=250 Score = 387 bits (993), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 217/250 (87%), Positives = 225/250 (90%), Gaps = 12/250 (4%) Query 1 VTTFDGDTSAGEAVDLTE------------ANAFQDAAAPAEEVDPAAALKAELRSKPGD 48 +TTFDGD+SAGEAVD+ E A A + EEVDPAAALKAELRSKPGD Sbjct 1 MTTFDGDSSAGEAVDVEERIEDAETTETTEAPAAEAPEESTEEVDPAAALKAELRSKPGD 60 Query 49 WYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 108 WYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY Sbjct 61 WYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGY 120 Query 109 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTA 168 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSAL LDDVVKFLLPRG+T+KAAKGAA+TA Sbjct 121 ILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFLLPRGATKKAAKGAATTA 180 Query 169 AAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPV 228 AAAEAGGLERP VEVDYEVGESVTVMDGPFATLPATISEVN EQQKLKVLVSIFGRETPV Sbjct 181 AAAEAGGLERPAVEVDYEVGESVTVMDGPFATLPATISEVNGEQQKLKVLVSIFGRETPV 240 Query 229 ELTFGQVSKI 238 ELTF QVSKI Sbjct 241 ELTFSQVSKI 250 >gi|254823017|ref|ZP_05228018.1| transcription antitermination protein NusG [Mycobacterium intracellulare ATCC 13950] Length=267 Score = 384 bits (985), Expect = 8e-105, Method: Compositional matrix adjust. Identities = 216/267 (81%), Positives = 225/267 (85%), Gaps = 29/267 (10%) Query 1 VTTFDGDTSAGEAVDL---TEANAFQDAAA--------------------------PAEE 31 +T+FDGD SAG+AVDL TEA D A PAEE Sbjct 1 MTSFDGDPSAGDAVDLKETTEAAEVSDDTATSEVSEATTDEATTDEAADAAGAPDEPAEE 60 Query 32 VDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTE 91 VDPA ALKAELRSKPGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTE Sbjct 61 VDPAVALKAELRSKPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTE 120 Query 92 IKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFL 151 IKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSAL LDDVVKFL Sbjct 121 IKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALTLDDVVKFL 180 Query 152 LPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAE 211 LPRG+T+KAAKGAA+TA AAEAGGLERP +EVDYEVGESVTVMDGPFATLPATISEVN E Sbjct 181 LPRGATKKAAKGAATTATAAEAGGLERPAIEVDYEVGESVTVMDGPFATLPATISEVNGE 240 Query 212 QQKLKVLVSIFGRETPVELTFGQVSKI 238 QQKLKVLVSIFGRETPVELTF QVSK+ Sbjct 241 QQKLKVLVSIFGRETPVELTFSQVSKL 267 >gi|333989302|ref|YP_004521916.1| transcription antitermination protein NusG [Mycobacterium sp. JDM601] gi|333485270|gb|AEF34662.1| transcription antitermination protein NusG [Mycobacterium sp. JDM601] Length=264 Score = 381 bits (979), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 202/269 (76%), Positives = 217/269 (81%), Gaps = 36/269 (13%) Query 1 VTTFDGDTSAGEAVDLTEANAFQDAAAPAE------------------------------ 30 +TTFDGDT AGE VD+ E APAE Sbjct 1 MTTFDGDTPAGEPVDVAETTE-----APAEAPADETLAAAEAAEGAETAEGTEAAEAEPA 55 Query 31 -EVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+DPAA LKAELR+KPGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV Sbjct 56 EELDPAATLKAELRTKPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 115 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSW+AVRNTPGVTGFVGATSRP++L LDDVVK Sbjct 116 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWSAVRNTPGVTGFVGATSRPTSLPLDDVVK 175 Query 150 FLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVN 209 FLLP+G+ +K +GAA+TAA GGLERPV+EVDYEVGESVTVMDGPFATLPA+ISEVN Sbjct 176 FLLPQGAAKKQGRGAAATAATTHDGGLERPVIEVDYEVGESVTVMDGPFATLPASISEVN 235 Query 210 AEQQKLKVLVSIFGRETPVELTFGQVSKI 238 AEQQKLKVLVSIFGRETPVELTF QVSKI Sbjct 236 AEQQKLKVLVSIFGRETPVELTFNQVSKI 264 >gi|145225693|ref|YP_001136371.1| transcription antitermination protein NusG [Mycobacterium gilvum PYR-GCK] gi|145218179|gb|ABP47583.1| transcription antitermination protein nusG [Mycobacterium gilvum PYR-GCK] Length=272 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 192/272 (71%), Positives = 211/272 (78%), Gaps = 34/272 (12%) Query 1 VTTFDGDTSAGEAVDL-----TEANAFQDA------AAPAE------------------- 30 +T+FDG+ +G+ VD+ T A A DA A PAE Sbjct 1 MTSFDGEAPSGDTVDIIDADDTNAEAGSDAVRSDEDAVPAEVADVVEGADAGESADETAP 60 Query 31 ----EVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPT 86 + DPA ALK ELR KPGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPT Sbjct 61 EEPEDEDPAVALKKELRLKPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPT 120 Query 87 EEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDD 146 EEVTEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDD Sbjct 121 EEVTEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDD 180 Query 147 VVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATIS 206 VVKFLLP + +K K A++ AAAE G ERPV+EVD+EVGESVTVMDGPFATLPA+IS Sbjct 181 VVKFLLPPAAAKKPGKATAASTAAAEVGATERPVIEVDFEVGESVTVMDGPFATLPASIS 240 Query 207 EVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 EVNAEQQKLKVLVSIFGRETPVELTF QV+KI Sbjct 241 EVNAEQQKLKVLVSIFGRETPVELTFNQVAKI 272 >gi|315446044|ref|YP_004078923.1| transcription antitermination protein nusG [Mycobacterium sp. Spyr1] gi|315264347|gb|ADU01089.1| transcription antitermination protein nusG [Mycobacterium sp. Spyr1] Length=272 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 187/239 (79%), Positives = 201/239 (85%), Gaps = 5/239 (2%) Query 5 DGDTSAGEAVDLTE---ANAFQDAAAPAE--EVDPAAALKAELRSKPGDWYVVHSYAGYE 59 D D E D+ E A D APAE + DPA ALK ELR KPGDWYV+HSYAGYE Sbjct 34 DEDAVPAEVADVVEGADAGESADETAPAEPEDEDPAVALKKELRLKPGDWYVIHSYAGYE 93 Query 60 NKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDS 119 NKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRM+L D+S Sbjct 94 NKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMELNDES 153 Query 120 WAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERP 179 W AVRNTPGVTGFVGATSRPS L+LDDVVKFLLP + +K K A++ AAAE G ERP Sbjct 154 WGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPPAAAKKPGKATAASTAAAEVGATERP 213 Query 180 VVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 V+EVD+EVGESVTVMDGPFATLPA+ISEVNAEQQKLKVLVSIFGRETPVELTF QV+KI Sbjct 214 VIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVELTFNQVAKI 272 >gi|336441164|gb|AEI54807.1| transcription antitermination protein NusG [Mycobacterium immunogenum] Length=266 Score = 359 bits (922), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 185/267 (70%), Positives = 209/267 (79%), Gaps = 30/267 (11%) Query 1 VTTFDGDTSAGEAVDLTEANAF------QDAAAPA-------------------EEVDPA 35 +TTFDGD +A E D + A D+AAP E+ DPA Sbjct 1 MTTFDGD-AASEPEDTADTAASVDVIDESDSAAPESTESTESSSEEPGAEVETDEDADPA 59 Query 36 AALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNG 95 A LKA+LR +PG+WYV+HSYAGYENKVKANL+TRVQNLDVGDYIFQ+EVPTEEVTEIKNG Sbjct 60 ATLKAQLRREPGEWYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEVTEIKNG 119 Query 96 QRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRG 155 QRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVVKFLLP+ Sbjct 120 QRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQT 179 Query 156 STRKAAKGA----ASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAE 211 +K AKG +TA++AEAG LERP +EVD+EVGESVTV DGPFATLPA+ISEVNAE Sbjct 180 PAKKPAKGGTATDTATASSAEAGALERPAIEVDFEVGESVTVTDGPFATLPASISEVNAE 239 Query 212 QQKLKVLVSIFGRETPVELTFGQVSKI 238 QQ+LKVLVSIFGRETPVEL F QV K+ Sbjct 240 QQRLKVLVSIFGRETPVELNFTQVEKL 266 >gi|336441158|gb|AEI54804.1| transcription antitermination protein NusG [Mycobacterium franklinii] Length=263 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 186/264 (71%), Positives = 208/264 (79%), Gaps = 27/264 (10%) Query 1 VTTFDGDTSAGEAVDLTEANAFQD-------AAAPA----------------EEVDPAAA 37 +TTFDGD ++ E D + A D +AAP E+ DPA Sbjct 1 MTTFDGDATS-EPEDTADTAASVDVIDEAEISAAPEPTESSSEESGAEVEADEDADPAVT 59 Query 38 LKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQR 97 LKA+LR +PG+WYVVHSYAGYENKVKANL+TRVQNLDVGDYIFQ+EVPTEEVTEIKNGQR Sbjct 60 LKAQLRREPGEWYVVHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEVTEIKNGQR 119 Query 98 KQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGST 157 KQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVVKFLLP+ Sbjct 120 KQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQTPA 179 Query 158 RKAAKGAA---STAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQK 214 +KA KG + S AAAE GGLERPV+EVD+EVGESVTV DGPFATLPA+ISEVNAEQQ+ Sbjct 180 KKATKGGSAETSGTAAAETGGLERPVIEVDFEVGESVTVTDGPFATLPASISEVNAEQQR 239 Query 215 LKVLVSIFGRETPVELTFGQVSKI 238 LKVLVSIFGRETPVEL F QV K+ Sbjct 240 LKVLVSIFGRETPVELNFTQVEKL 263 >gi|111018977|ref|YP_701949.1| transcription antitermination protein NusG [Rhodococcus jostii RHA1] gi|110818507|gb|ABG93791.1| transcription antitermination protein [Rhodococcus jostii RHA1] Length=264 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 177/234 (76%), Positives = 197/234 (85%), Gaps = 4/234 (1%) Query 7 DTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANL 66 + +A EAV EA + +A E DP A LKA LR PGDWYV+HSYAGYENKVKANL Sbjct 33 EATAEEAVTADEAVSADEAVTAEEPEDPVAELKAALRRAPGDWYVIHSYAGYENKVKANL 92 Query 67 ETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNT 126 ETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDL D+SW AVRNT Sbjct 93 ETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLNDESWGAVRNT 152 Query 127 PGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGG--LERPVVEVD 184 PGVTGFVGATSRPS L L++V+KFLLP+ +K A AA+T +A E GG +P++EVD Sbjct 153 PGVTGFVGATSRPSPLTLNEVIKFLLPQQEQKKQA--AAATVSAGETGGESFAKPLIEVD 210 Query 185 YEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 +EVGESVTVMDGPFATLPA+ISEVNAEQQKLKVLVSIFGRETPVEL+F QV+KI Sbjct 211 FEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVELSFTQVAKI 264 >gi|336441162|gb|AEI54806.1| transcription antitermination protein NusG [Mycobacterium chelonae] Length=264 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 174/211 (83%), Positives = 191/211 (91%), Gaps = 2/211 (0%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DPA LKA+LR +PG+WYVVHSYAGYENKVKANL+TRVQNLDVGDYIFQ+EVPTEEV Sbjct 54 EDADPAVTLKAQLRREPGEWYVVHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEV 113 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS LALDDVVK Sbjct 114 TEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLALDDVVK 173 Query 150 FLLPRGSTRKAAKGA--ASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISE 207 FLLP+ +K AKG+ + AAAAE GGLERPV+EVD+EVGESVTV DGPFATLPA+ISE Sbjct 174 FLLPQTPAKKPAKGSATETAAAAAETGGLERPVIEVDFEVGESVTVTDGPFATLPASISE 233 Query 208 VNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VNAEQQ+LKVLVSIFGRETPVEL F QV K+ Sbjct 234 VNAEQQRLKVLVSIFGRETPVELNFTQVEKL 264 >gi|120402246|ref|YP_952075.1| transcription antitermination protein NusG [Mycobacterium vanbaalenii PYR-1] gi|119955064|gb|ABM12069.1| transcription antitermination protein nusG [Mycobacterium vanbaalenii PYR-1] Length=266 Score = 348 bits (893), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 189/266 (72%), Positives = 209/266 (79%), Gaps = 28/266 (10%) Query 1 VTTFDGDTSAGEAVD---LTEANAFQDAAAPAEEV-----------------------DP 34 +T+FDG+ +G+ VD + E NA A A AE V DP Sbjct 1 MTSFDGEAPSGDTVDTIDVDETNAEVRAGADAEAVGSDEDAAPAEATDAAEGADEEDEDP 60 Query 35 AAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKN 94 A ALK ELR KPG+WYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKN Sbjct 61 AVALKMELRLKPGEWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKN 120 Query 95 GQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLL-- 152 GQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVVKFLL Sbjct 121 GQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPP 180 Query 153 PRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQ 212 A +A+ AA++EAGG+ERPV+EVD+EVGESVTVMDGPFATLPA+ISEVNAEQ Sbjct 181 AAAKKPGKAATSAAAAASSEAGGIERPVIEVDFEVGESVTVMDGPFATLPASISEVNAEQ 240 Query 213 QKLKVLVSIFGRETPVELTFGQVSKI 238 QKLKVLVSIFGRETPVELTF QV+KI Sbjct 241 QKLKVLVSIFGRETPVELTFNQVAKI 266 >gi|226361072|ref|YP_002778850.1| transcription antitermination protein NusG [Rhodococcus opacus B4] gi|226239557|dbj|BAH49905.1| transcription antitermination protein NusG [Rhodococcus opacus B4] Length=288 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/208 (82%), Positives = 185/208 (89%), Gaps = 4/208 (1%) Query 33 DPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 92 DP A LKA LR PGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI Sbjct 83 DPVAELKAALRRAPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 142 Query 93 KNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLL 152 KNGQRKQVNRKVLPGYILVRMDL D+SW AVRNTPGVTGFVGATSRPS L L++V+KFLL Sbjct 143 KNGQRKQVNRKVLPGYILVRMDLNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVIKFLL 202 Query 153 PRGSTRKAAKGAASTAAAAEAGG--LERPVVEVDYEVGESVTVMDGPFATLPATISEVNA 210 P+ +K A AA+T +A E GG +P++EVD+EVGESVTVMDGPFATLPA+ISEVNA Sbjct 203 PQQEQKKQA--AAATVSAGETGGETFAKPLIEVDFEVGESVTVMDGPFATLPASISEVNA 260 Query 211 EQQKLKVLVSIFGRETPVELTFGQVSKI 238 EQQKLKVLVSIFGRETPVEL+F QV+KI Sbjct 261 EQQKLKVLVSIFGRETPVELSFTQVAKI 288 >gi|336441166|gb|AEI54808.1| transcription antitermination protein NusG [Mycobacterium massiliense] Length=264 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 170/213 (80%), Positives = 191/213 (90%), Gaps = 4/213 (1%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DPAA LKA+LR +PG+WYV+HSYAGYENKVKANL+TRVQNLDVGDYIFQ+EVPTEEV Sbjct 52 EDADPAATLKAQLRREPGEWYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEV 111 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVVK Sbjct 112 TEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVK 171 Query 150 FLLPRGSTRK----AAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATI 205 FLLP+ +K AA A+T +++E GGLERPV+EVD+EVGESVTV DGPFATLPA+I Sbjct 172 FLLPQAPAKKPAKGAASADAATTSSSEPGGLERPVIEVDFEVGESVTVTDGPFATLPASI 231 Query 206 SEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 SEVNAEQQ+LKVLVSIFGRETPVEL F QV K+ Sbjct 232 SEVNAEQQRLKVLVSIFGRETPVELNFTQVEKL 264 >gi|169630973|ref|YP_001704622.1| transcription antitermination protein NusG [Mycobacterium abscessus ATCC 19977] gi|169242940|emb|CAM63968.1| Transcription antitermination protein NusG [Mycobacterium abscessus] gi|336441156|gb|AEI54803.1| transcription antitermination protein NusG [Mycobacterium abscessus] Length=264 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 171/213 (81%), Positives = 192/213 (91%), Gaps = 4/213 (1%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DPAA LKA+LR +PG+WYV+HSYAGYENKVKANL+TRVQNLDVGDYIFQ+EVPTEEV Sbjct 52 EDADPAATLKAQLRREPGEWYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEV 111 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVVK Sbjct 112 TEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVK 171 Query 150 FLLPRGSTRK----AAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATI 205 FLLP+ +K AA A+TA+++E GGLERPV+EVD+EVGESVTV DGPFATLPA+I Sbjct 172 FLLPQAPAKKPAKGAASADAATASSSEPGGLERPVIEVDFEVGESVTVTDGPFATLPASI 231 Query 206 SEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 SEVNAEQQ+LKVLVSIFGRETPVEL F QV K+ Sbjct 232 SEVNAEQQRLKVLVSIFGRETPVELNFTQVEKL 264 >gi|108797896|ref|YP_638093.1| transcription antitermination protein NusG [Mycobacterium sp. MCS] gi|119866991|ref|YP_936943.1| transcription antitermination protein NusG [Mycobacterium sp. KMS] gi|108768315|gb|ABG07037.1| transcription antitermination protein nusG [Mycobacterium sp. MCS] gi|119693080|gb|ABL90153.1| transcription antitermination protein nusG [Mycobacterium sp. KMS] Length=270 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 190/270 (71%), Positives = 209/270 (78%), Gaps = 32/270 (11%) Query 1 VTTFDGDTSAGEAVDLT--------------------------EANAFQDA-----AAPA 29 +T+F+GDT + E+VDL EA D+ AAP Sbjct 1 MTSFEGDTPSAESVDLVDTDETDTATTDPATEDADVAGGEVSEEAATPADSEPAAEAAPV 60 Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DPA ALK ELR KPGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV Sbjct 61 EDEDPAVALKKELRLKPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 120 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVVK Sbjct 121 TEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVK 180 Query 150 FLLPRGSTRKAAKGAASTAAAAEAGG-LERPVVEVDYEVGESVTVMDGPFATLPATISEV 208 FLLP + +K K A++ A AA + LERP + VD+EVGESVTVMDGPFATLPA+ISEV Sbjct 181 FLLPPAAAKKPGKAASTAAGAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISEV 240 Query 209 NAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 NAEQQKLKVLVSIFGRETPVELTF QVSKI Sbjct 241 NAEQQKLKVLVSIFGRETPVELTFNQVSKI 270 >gi|118467542|ref|YP_885732.1| transcription antitermination protein NusG [Mycobacterium smegmatis str. MC2 155] gi|118168829|gb|ABK69725.1| transcription antitermination protein NusG [Mycobacterium smegmatis str. MC2 155] Length=280 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 181/223 (82%), Positives = 198/223 (89%), Gaps = 2/223 (0%) Query 18 EANAFQDAAAPAEE-VDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVG 76 E++ + AAPA+E DPA ALK ELR KPGDWYV+HSYAGYENKVKANLETRVQNLDVG Sbjct 58 ESSEGEGEAAPADEDEDPAVALKKELRLKPGDWYVIHSYAGYENKVKANLETRVQNLDVG 117 Query 77 DYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGAT 136 DYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGAT Sbjct 118 DYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGAT 177 Query 137 SRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEA-GGLERPVVEVDYEVGESVTVMD 195 SRPS L+LDDVVKFLLP+G+ +K K AA+ A+AA LERP + VD+EVGESVTVMD Sbjct 178 SRPSPLSLDDVVKFLLPQGAAKKPGKAAAAAASAASTEATLERPEILVDFEVGESVTVMD 237 Query 196 GPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 GPFATLPA+ISEVNAEQQKLKVLVSIFGRETPVELTF QV+KI Sbjct 238 GPFATLPASISEVNAEQQKLKVLVSIFGRETPVELTFNQVAKI 280 >gi|312141016|ref|YP_004008352.1| transcription antitermination protein nusg [Rhodococcus equi 103S] gi|311890355|emb|CBH49673.1| transcription antitermination protein NusG [Rhodococcus equi 103S] Length=265 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/214 (79%), Positives = 183/214 (86%), Gaps = 11/214 (5%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 EEVDP A KA +R PGDWYV+HSYAGYENKVK NLETRVQNLDVGDYIFQVEVPTEEV Sbjct 58 EEVDPVAEFKAAMRRAPGDWYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEV 117 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L L++VVK Sbjct 118 TEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVK 177 Query 150 FLLPRGSTRK-----AAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPAT 204 FL+P+ +K AA G S AAAA +PV+EVD+EVGESVTVMDGPFATLPA+ Sbjct 178 FLMPQQGQKKPATAAAAAGDVSVAAAA------KPVIEVDFEVGESVTVMDGPFATLPAS 231 Query 205 ISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 ISEVNAEQQKLKVLVSIFGRETPVEL+F QV KI Sbjct 232 ISEVNAEQQKLKVLVSIFGRETPVELSFNQVQKI 265 >gi|325675347|ref|ZP_08155031.1| transcription antitermination protein NusG [Rhodococcus equi ATCC 33707] gi|325553318|gb|EGD22996.1| transcription antitermination protein NusG [Rhodococcus equi ATCC 33707] Length=265 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/214 (79%), Positives = 183/214 (86%), Gaps = 11/214 (5%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 EEVDP A KA +R PGDWYV+HSYAGYENKVK NLETRVQNLDVGDYIFQVEVPTEEV Sbjct 58 EEVDPVAEFKAAMRRAPGDWYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEV 117 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L L++VVK Sbjct 118 TEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLTLNEVVK 177 Query 150 FLLPRGSTRK-----AAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPAT 204 FL+P+ +K AA G S AAAA +PV+EVD+EVGESVTVMDGPFATLPA+ Sbjct 178 FLMPQQGQKKPATAAAAAGDVSVAAAA------KPVIEVDFEVGESVTVMDGPFATLPAS 231 Query 205 ISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 ISEVNAEQQKLKVLVSIFGRETPVEL+F QV KI Sbjct 232 ISEVNAEQQKLKVLVSIFGRETPVELSFNQVQKI 265 >gi|126433559|ref|YP_001069250.1| transcription antitermination protein NusG [Mycobacterium sp. JLS] gi|126233359|gb|ABN96759.1| transcription antitermination protein nusG [Mycobacterium sp. JLS] Length=271 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 187/271 (70%), Positives = 207/271 (77%), Gaps = 33/271 (12%) Query 1 VTTFDGDTSAGEAVDLTEAN------------AFQDAAAPAEEV---------------- 32 +T+F+GDT + E VDL + + A +DA EV Sbjct 1 MTSFEGDTPSAEGVDLVDTDETEATDTANTDPATEDADVAGGEVSEEAATEAPAEAAPVE 60 Query 33 ----DPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEE 88 DPA ALK ELR +PGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEE Sbjct 61 VEDEDPAVALKKELRLRPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEE 120 Query 89 VTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVV 148 VTEIKNGQRKQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVV Sbjct 121 VTEIKNGQRKQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVV 180 Query 149 KFLLPRGSTRKAAKGAASTAAAAEAGG-LERPVVEVDYEVGESVTVMDGPFATLPATISE 207 KFLLP + +K K A++ A AA + LERP + VD+EVGESVTVMDGPFATLPA+ISE Sbjct 181 KFLLPPAAAKKPGKAASTAAGAASSEATLERPEILVDFEVGESVTVMDGPFATLPASISE 240 Query 208 VNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VNAEQQKLKVLVSIFGRETPVELTF QVSKI Sbjct 241 VNAEQQKLKVLVSIFGRETPVELTFNQVSKI 271 >gi|336441160|gb|AEI54805.1| transcription antitermination protein NusG [Mycobacterium bolletii] Length=264 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 166/205 (81%), Positives = 186/205 (91%), Gaps = 4/205 (1%) Query 38 LKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQR 97 LKA+LR +PG+WYV+HSYAGYENKVKANL+TRVQNLDVGDYIFQ+EVPTEEVTEIKNGQR Sbjct 60 LKAQLRREPGEWYVIHSYAGYENKVKANLQTRVQNLDVGDYIFQIEVPTEEVTEIKNGQR 119 Query 98 KQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGST 157 KQVNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+LDDVVKFLLP+ Sbjct 120 KQVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLSLDDVVKFLLPQTPA 179 Query 158 RK----AAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQ 213 +K AA A+TA+++E GGLERPV+EVD+EVGESVTV DGPFATLPA+ISEVNAEQQ Sbjct 180 KKPAKGAASADAATASSSEPGGLERPVIEVDFEVGESVTVTDGPFATLPASISEVNAEQQ 239 Query 214 KLKVLVSIFGRETPVELTFGQVSKI 238 +LKVLVSIFGRETPVEL F QV K+ Sbjct 240 RLKVLVSIFGRETPVELNFTQVEKL 264 >gi|54027090|ref|YP_121332.1| transcription antitermination protein NusG [Nocardia farcinica IFM 10152] gi|54018598|dbj|BAD59968.1| putative transcription antitermination regulator [Nocardia farcinica IFM 10152] Length=273 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 165/215 (77%), Positives = 181/215 (85%), Gaps = 2/215 (0%) Query 26 AAP--AEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVE 83 AAP AE DP A +KA LR PGDWYV+HSYAGYENKVKANLETRVQNLD+ DYIFQVE Sbjct 59 AAPVDAEPADPVAEMKAALRRAPGDWYVIHSYAGYENKVKANLETRVQNLDLEDYIFQVE 118 Query 84 VPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALA 143 VPTEEVTEIKNGQRK VNRKVLPGYILVRM+L D+SW AVRNTPGVTGFVGATSRPS L+ Sbjct 119 VPTEEVTEIKNGQRKNVNRKVLPGYILVRMELNDESWGAVRNTPGVTGFVGATSRPSPLS 178 Query 144 LDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPA 203 +DDVVKFL+P +KA AA+ + +P +EVD+EVGESVTVMDGPFATLPA Sbjct 179 IDDVVKFLVPASQQKKAPAAAAAASTETSTDVAPKPAIEVDFEVGESVTVMDGPFATLPA 238 Query 204 TISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 +ISEVNAEQQKLKVLVSIFGRETPVEL F QV+KI Sbjct 239 SISEVNAEQQKLKVLVSIFGRETPVELAFTQVAKI 273 >gi|226305205|ref|YP_002765163.1| transcription antitermination protein NusG [Rhodococcus erythropolis PR4] gi|229490716|ref|ZP_04384554.1| transcription antitermination protein NusG [Rhodococcus erythropolis SK121] gi|226184320|dbj|BAH32424.1| transcription antitermination protein NusG [Rhodococcus erythropolis PR4] gi|229322536|gb|EEN88319.1| transcription antitermination protein NusG [Rhodococcus erythropolis SK121] Length=278 Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 176/240 (74%), Positives = 197/240 (83%), Gaps = 9/240 (3%) Query 5 DGDTSAGEAVDLTEANAFQDAAAPAEEV---DPAAALKAELRSKPGDWYVVHSYAGYENK 61 D D +A E V +++ D AAPA E+ DP A LKA LR PGDWYV+HSYAGYENK Sbjct 42 DADAAATEDV-ISDDAENSDEAAPAAELEVEDPVAELKAALRRAPGDWYVIHSYAGYENK 100 Query 62 VKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWA 121 VK NLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRM+L D+SW Sbjct 101 VKTNLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMELNDESWG 160 Query 122 AVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAA---AEAGGLER 178 AVRNTPGVTGFVGATSRPS L L++VVKFLLP+ +K AA+ AA +E+ G + Sbjct 161 AVRNTPGVTGFVGATSRPSPLTLNEVVKFLLPQQEQKKQQAAAAAVAAGEAPSESFG--K 218 Query 179 PVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 P++EVD+EVGESVTVMDGPFATLPA+ISEVN EQQKLKVLVSIFGRETPVEL F QV+KI Sbjct 219 PLIEVDFEVGESVTVMDGPFATLPASISEVNGEQQKLKVLVSIFGRETPVELNFNQVAKI 278 >gi|302523949|ref|ZP_07276291.1| transcription termination/antitermination factor NusG [Streptomyces sp. AA4] gi|302432844|gb|EFL04660.1| transcription termination/antitermination factor NusG [Streptomyces sp. AA4] Length=265 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 167/215 (78%), Positives = 182/215 (85%), Gaps = 8/215 (3%) Query 28 PAEEVD-PAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPT 86 PA E D P AAL+AEL++ PG+WYVVHSYAGYENKVK NLETR Q LDV DYIFQ+EVPT Sbjct 55 PAPEADDPVAALRAELKAAPGEWYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPT 114 Query 87 EEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDD 146 EEVTEIKNGQRKQV RKVLPGYILVRMDL D SW+AVRNTPGVTGFVGATSRPS L +D+ Sbjct 115 EEVTEIKNGQRKQVQRKVLPGYILVRMDLNDQSWSAVRNTPGVTGFVGATSRPSPLTVDE 174 Query 147 VVKFLLP---RGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPA 203 V+KFL P + + KAAKG S AAAA +G P VEVD+EVGESVTVMDGPFATLPA Sbjct 175 VLKFLAPQVEKEAPAKAAKGGES-AAAATSGA---PTVEVDFEVGESVTVMDGPFATLPA 230 Query 204 TISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 TISEVN + QKLKVLVSIFGRETPVEL+F QVSKI Sbjct 231 TISEVNVDGQKLKVLVSIFGRETPVELSFSQVSKI 265 >gi|333918077|ref|YP_004491658.1| transcription antitermination protein nusG [Amycolicicoccus subflavus DQS3-9A1] gi|333480298|gb|AEF38858.1| Transcription antitermination protein nusG [Amycolicicoccus subflavus DQS3-9A1] Length=245 Score = 324 bits (830), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 168/239 (71%), Positives = 187/239 (79%), Gaps = 12/239 (5%) Query 12 EAVDLTEANAFQDAAAPAE------------EVDPAAALKAELRSKPGDWYVVHSYAGYE 59 +AVDLTE +A A EVDP LKA+LR GDWYVVHSYAGYE Sbjct 7 DAVDLTEEDAVNAEGAAVVEADVEAAAADDIEVDPVEELKAKLRRAEGDWYVVHSYAGYE 66 Query 60 NKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDS 119 NKVK NLETR+QNLD GDYIFQ+EVPTEEVTEIKNGQRK VNRKVLPGYILVRM L D+S Sbjct 67 NKVKTNLETRIQNLDAGDYIFQIEVPTEEVTEIKNGQRKLVNRKVLPGYILVRMILNDES 126 Query 120 WAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERP 179 W VRNTPGVTGFVGATSRPS + +++VVKFLLP + +KA G A+ A E+G +P Sbjct 127 WGVVRNTPGVTGFVGATSRPSPITINEVVKFLLPPQARKKAPAGTAAGGAPQESGVAAKP 186 Query 180 VVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 +EVD+EVGESVTVMDGPFATLPA+ISEVNAEQQKLKVLVSIFGRETPVEL F QVSK+ Sbjct 187 AIEVDFEVGESVTVMDGPFATLPASISEVNAEQQKLKVLVSIFGRETPVELGFNQVSKL 245 >gi|331699210|ref|YP_004335449.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326953899|gb|AEA27596.1| NusG antitermination factor [Pseudonocardia dioxanivorans CB1190] Length=327 Score = 324 bits (830), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 162/209 (78%), Positives = 176/209 (85%), Gaps = 5/209 (2%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DPA L+ LR PGDWYVVHSYAGYENKVK+NLETRVQ LDV D+I+QVEVPTEEV Sbjct 124 EDTDPAEELREALRRAPGDWYVVHSYAGYENKVKSNLETRVQTLDVEDFIYQVEVPTEEV 183 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRKQV RKVLPGYILVRM+L D SW AVRNTPGVTGFVGATSRPS L++DDV+K Sbjct 184 TEIKNGQRKQVQRKVLPGYILVRMELNDQSWGAVRNTPGVTGFVGATSRPSPLSIDDVLK 243 Query 150 FLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVN 209 FLLP+ T A K AA AAA G + VEVD+EVGESVTVMDGPFATLPATI+EVN Sbjct 244 FLLPK--TEPAKKDAAKPGAAATPG---KAAVEVDFEVGESVTVMDGPFATLPATINEVN 298 Query 210 AEQQKLKVLVSIFGRETPVELTFGQVSKI 238 + QKLKVLVSIFGRETPVEL FGQVSKI Sbjct 299 VDAQKLKVLVSIFGRETPVELGFGQVSKI 327 >gi|256380624|ref|YP_003104284.1| NusG antitermination factor [Actinosynnema mirum DSM 43827] gi|255924927|gb|ACU40438.1| NusG antitermination factor [Actinosynnema mirum DSM 43827] Length=266 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 165/232 (72%), Positives = 186/232 (81%), Gaps = 11/232 (4%) Query 7 DTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANL 66 DT+ G+ VD+ E ++ A PA DPAA ++ LR PGDWYVVHSYAGYENKVK NL Sbjct 46 DTADGD-VDVVELDSTPIDAEPA---DPAAEMREALRRAPGDWYVVHSYAGYENKVKTNL 101 Query 67 ETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNT 126 ETR+Q LD+ DYIFQVEVPTEEVTEIKNGQRKQV RKVLPGYILVRM+L D SW+AVRNT Sbjct 102 ETRIQTLDMEDYIFQVEVPTEEVTEIKNGQRKQVQRKVLPGYILVRMELNDGSWSAVRNT 161 Query 127 PGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYE 186 PGVTGFVGATS+PS L +D+V+KFLLP+G AA A+T + VEVD+E Sbjct 162 PGVTGFVGATSKPSPLTVDEVLKFLLPQGKQEPAAGKKAATTPV-------KSTVEVDFE 214 Query 187 VGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VGESVTVMDGPFATLPATISEVNA+ QKLKVLVSIFGRETPVEL+F QVSKI Sbjct 215 VGESVTVMDGPFATLPATISEVNADGQKLKVLVSIFGRETPVELSFSQVSKI 266 >gi|300782525|ref|YP_003762816.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32] gi|299792039|gb|ADJ42414.1| transcription antiterminator NusG [Amycolatopsis mediterranei U32] gi|340523895|gb|AEK39100.1| transcription antiterminator NusG [Amycolatopsis mediterranei S699] Length=288 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 160/212 (76%), Positives = 177/212 (84%), Gaps = 5/212 (2%) Query 29 AEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEE 88 A++ DP A L++EL + PG+WYVVHSYAGYENKVK NLETR Q LDV DYIFQ+EVPTEE Sbjct 80 ADDEDPVAKLRSELLAAPGEWYVVHSYAGYENKVKTNLETRTQTLDVEDYIFQIEVPTEE 139 Query 89 VTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVV 148 VTEIKNGQRKQV RKVLPGYILVRMDL D SW+AVRNTPGVTGFVGATSRPS L +D+V+ Sbjct 140 VTEIKNGQRKQVQRKVLPGYILVRMDLNDASWSAVRNTPGVTGFVGATSRPSPLTVDEVL 199 Query 149 KFLLPRGSTRKAAKGAA--STAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATIS 206 KFL P+ + AK STA AA GG P VEVD+E+GESVTVMDGPFATLPATIS Sbjct 200 KFLAPKVESEAPAKSGKGESTATAAPLGG---PAVEVDFEIGESVTVMDGPFATLPATIS 256 Query 207 EVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 EVN + QKLKVLVSIFGRETPVEL+F QVSKI Sbjct 257 EVNIDGQKLKVLVSIFGRETPVELSFNQVSKI 288 >gi|343925625|ref|ZP_08765142.1| transcription antitermination protein NusG [Gordonia alkanivorans NBRC 16433] gi|343764415|dbj|GAA12068.1| transcription antitermination protein NusG [Gordonia alkanivorans NBRC 16433] Length=273 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 164/237 (70%), Positives = 189/237 (80%), Gaps = 0/237 (0%) Query 2 TTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYENK 61 T +GD + VD +A+ AP EEVDP L+ +LR PGDWYV+HSYAGYENK Sbjct 37 TAAEGDEAPATDVDSEDADETPAEEAPEEEVDPVEELRKQLRRAPGDWYVIHSYAGYENK 96 Query 62 VKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWA 121 VKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQ K+VNRKVLPGYILVRM+L D+SW Sbjct 97 VKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQPKKVNRKVLPGYILVRMELNDESWG 156 Query 122 AVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPVV 181 AVRNTPGVTGFVG TS+PS L+L++V++FL+PR +K AKG ++ A + Sbjct 157 AVRNTPGVTGFVGMTSKPSPLSLNEVLQFLMPRAEAKKPAKGGSAAEGVEAAAAAASNTI 216 Query 182 EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 EVD+EVGESVTVMDGPFATLPA+ISEVNAEQ+K+KVLVSIFGRETPVEL F QV KI Sbjct 217 EVDFEVGESVTVMDGPFATLPASISEVNAEQRKVKVLVSIFGRETPVELGFNQVEKI 273 >gi|296138474|ref|YP_003645717.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296026608|gb|ADG77378.1| NusG antitermination factor [Tsukamurella paurometabola DSM 20162] Length=276 Score = 317 bits (812), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 159/210 (76%), Positives = 177/210 (85%), Gaps = 4/210 (1%) Query 33 DPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 92 DP LKA+LR+ PGDWYV+H+YAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI Sbjct 66 DPVEELKAQLRTAPGDWYVIHTYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 125 Query 93 KNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLL 152 KNGQ+K+VNRKVLPGYILVRMDL D+SW AVRNTPGVTGFVG TS+PS L +++VVKFLL Sbjct 126 KNGQQKRVNRKVLPGYILVRMDLNDESWGAVRNTPGVTGFVGLTSKPSPLTMNEVVKFLL 185 Query 153 PRGSTRKAAKGAASTAAAAEAGGL----ERPVVEVDYEVGESVTVMDGPFATLPATISEV 208 P + K AK + A A A + P VEVD+EVGESVTVMDGPFATLPA+ISE+ Sbjct 186 PESARTKPAKDKGAAADGAAAASGGAVSQGPAVEVDFEVGESVTVMDGPFATLPASISEI 245 Query 209 NAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 NAEQ+KLKVLVSIFGRETPVEL F QV KI Sbjct 246 NAEQRKLKVLVSIFGRETPVELAFNQVEKI 275 >gi|325003301|ref|ZP_08124413.1| NusG antitermination factor [Pseudonocardia sp. P1] Length=308 Score = 314 bits (805), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 168/242 (70%), Positives = 189/242 (79%), Gaps = 6/242 (2%) Query 3 TFDG---DTSAGEAVDLTEANAFQDAAA--PAEEVDPAAALKAELRSKPGDWYVVHSYAG 57 T DG + +A A D ++ A + AA PAE+VDP L+A LR PGDWYVVHSYAG Sbjct 67 TLDGAGDEPAADAATDESDDTATDEPAADEPAEDVDPEEELRAALRRAPGDWYVVHSYAG 126 Query 58 YENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTD 117 YENKVK+NLETR Q LDV DYIFQVEVPTEEVTEIKNGQRK+V RKVLPGYILVRM+L D Sbjct 127 YENKVKSNLETRAQTLDVEDYIFQVEVPTEEVTEIKNGQRKKVQRKVLPGYILVRMELND 186 Query 118 DSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRG-STRKAAKGAASTAAAAEAGGL 176 SW AVRNTPGVTGFVGATS+PS L +++VVKFLLP+ + +K A+ AA A A Sbjct 187 QSWGAVRNTPGVTGFVGATSKPSPLTVNEVVKFLLPKTEAPKKEAEAGKPAAAGAAATTG 246 Query 177 ERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVS 236 VEVD+EVGESVTVMDGPFATLPA+ISEVN + QKLKVLVSIFGRETPVEL F QVS Sbjct 247 GSSTVEVDFEVGESVTVMDGPFATLPASISEVNIDAQKLKVLVSIFGRETPVELGFNQVS 306 Query 237 KI 238 KI Sbjct 307 KI 308 >gi|257054435|ref|YP_003132267.1| transcription antitermination protein nusG [Saccharomonospora viridis DSM 43017] gi|256584307|gb|ACU95440.1| transcription antitermination protein nusG [Saccharomonospora viridis DSM 43017] Length=267 Score = 314 bits (804), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 160/209 (77%), Positives = 174/209 (84%), Gaps = 3/209 (1%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DP A L+AEL S PGDWYVVHSYAGYEN+VK+N+ETR Q LDV DYIFQVEVPTEEV Sbjct 62 EDEDPVAKLRAELESLPGDWYVVHSYAGYENRVKSNIETRRQTLDVEDYIFQVEVPTEEV 121 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TEIKNGQRK V RKVLPGYILVRM++ D SW+AVRNTPGVTGFVGATSRPS L+LD+VVK Sbjct 122 TEIKNGQRKIVQRKVLPGYILVRMEMNDASWSAVRNTPGVTGFVGATSRPSPLSLDEVVK 181 Query 150 FLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVN 209 FL P+ KAA A AAE P VEVD+EVGESVTVMDGPFATLPATISEVN Sbjct 182 FLAPK--VEKAAPAKAKGEPAAEEQVAAGP-VEVDFEVGESVTVMDGPFATLPATISEVN 238 Query 210 AEQQKLKVLVSIFGRETPVELTFGQVSKI 238 + QKLKVLVSIFGRETPVEL+F QVSKI Sbjct 239 VDAQKLKVLVSIFGRETPVELSFNQVSKI 267 >gi|317509041|ref|ZP_07966672.1| transcription termination/antitermination factor NusG [Segniliparus rugosus ATCC BAA-974] gi|316252696|gb|EFV12135.1| transcription termination/antitermination factor NusG [Segniliparus rugosus ATCC BAA-974] Length=263 Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 156/209 (75%), Positives = 172/209 (83%), Gaps = 2/209 (0%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DPAAALKA+LR PG WYVVHSYAGYENKVK NLE RV NLDV DYIFQ+EVPTEEV Sbjct 57 EDEDPAAALKAKLRRAPGKWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEV 116 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVK 149 TE+KNGQRK VNRK+LPGYILVRMDL D+SW+ VRNTPGVTGFVG TSRP+ L LDDVVK Sbjct 117 TEVKNGQRKLVNRKILPGYILVRMDLNDESWSTVRNTPGVTGFVG-TSRPTPLTLDDVVK 175 Query 150 FLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVN 209 FLLPR +K A A + A + PV VDY+VGESVTV DGPFA L A+ISE+N Sbjct 176 FLLPRQEPKKTAPAAKAKQGDGFAAAI-APVALVDYQVGESVTVNDGPFANLAASISEIN 234 Query 210 AEQQKLKVLVSIFGRETPVELTFGQVSKI 238 AEQQKLKVLVSIFGRETPVEL+F QV+KI Sbjct 235 AEQQKLKVLVSIFGRETPVELSFNQVTKI 263 >gi|326382994|ref|ZP_08204683.1| transcription antitermination protein NusG [Gordonia neofelifaecis NRRL B-59395] gi|326198130|gb|EGD55315.1| transcription antitermination protein NusG [Gordonia neofelifaecis NRRL B-59395] Length=249 Score = 308 bits (788), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 154/209 (74%), Positives = 174/209 (84%), Gaps = 3/209 (1%) Query 33 DPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 92 DP A LKA+LR PG+WYV+HSYAGYENKVK NLETRVQNLDVGDYIFQVEVPTEEVTEI Sbjct 41 DPVAELKAQLRRLPGEWYVIHSYAGYENKVKTNLETRVQNLDVGDYIFQVEVPTEEVTEI 100 Query 93 KNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLL 152 KNGQ K+VNRKVLPGYILVRM+L D+SW+AVRNTPGVTGFVG TSRPS L++ +V++FL+ Sbjct 101 KNGQPKKVNRKVLPGYILVRMELNDESWSAVRNTPGVTGFVGMTSRPSPLSIKEVLQFLM 160 Query 153 PRGSTRKAAKGAASTAAAAEAGGLERP---VVEVDYEVGESVTVMDGPFATLPATISEVN 209 PR RKA A+ AA +VEVD+EVGESVTVMDGPFATLPA+ISEVN Sbjct 161 PRAEVRKAEAAKAAAAAGESVEAAAAAASNLVEVDFEVGESVTVMDGPFATLPASISEVN 220 Query 210 AEQQKLKVLVSIFGRETPVELTFGQVSKI 238 EQ+K+KVLVSIFGRETPVEL F QV K+ Sbjct 221 TEQRKVKVLVSIFGRETPVELGFNQVEKL 249 >gi|262201104|ref|YP_003272312.1| transcription termination/antitermination factor NusG [Gordonia bronchialis DSM 43247] gi|262084451|gb|ACY20419.1| transcription termination/antitermination factor NusG [Gordonia bronchialis DSM 43247] Length=299 Score = 304 bits (778), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 151/202 (75%), Positives = 169/202 (84%), Gaps = 1/202 (0%) Query 38 LKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQR 97 L+ +LR PGDWYV+HSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQ Sbjct 98 LRKQLRRAPGDWYVIHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQP 157 Query 98 KQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPR-GS 156 K+VNRKVLPGYILVRMDL DDSW AVRNTPGVTGFVG S+PS L+L++V++FL+PR + Sbjct 158 KKVNRKVLPGYILVRMDLNDDSWGAVRNTPGVTGFVGMNSKPSPLSLNEVLQFLMPRTEA 217 Query 157 TRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLK 216 + AA A A +EVD+EVGESVTVMDGPFATLPA+ISEVNAEQ+K+K Sbjct 218 KKPAAAKGAGAEGVEAAAAAATATIEVDFEVGESVTVMDGPFATLPASISEVNAEQRKVK 277 Query 217 VLVSIFGRETPVELTFGQVSKI 238 VLVSIFGRETPVEL F QV KI Sbjct 278 VLVSIFGRETPVELAFNQVEKI 299 >gi|296395107|ref|YP_003659991.1| NusG antitermination factor [Segniliparus rotundus DSM 44985] gi|296182254|gb|ADG99160.1| NusG antitermination factor [Segniliparus rotundus DSM 44985] Length=258 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 154/205 (76%), Positives = 170/205 (83%), Gaps = 2/205 (0%) Query 34 PAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIK 93 PA ALKA+LR PG WYVVHSYAGYENKVK NLE RV NLDV DYIFQ+EVPTEEVTE+K Sbjct 56 PAEALKAKLRRAPGKWYVVHSYAGYENKVKLNLENRVHNLDVADYIFQIEVPTEEVTEVK 115 Query 94 NGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLP 153 NGQRK VNRK+LPGYILVRMDL D+SW+ VRNTPGVTGFVG TSRP+ LAL+DVVKFLLP Sbjct 116 NGQRKLVNRKILPGYILVRMDLNDESWSTVRNTPGVTGFVG-TSRPTPLALNDVVKFLLP 174 Query 154 RGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQ 213 R +KAA A + A + V EVDY+VGESVTV DGPFA L A+ISE+NAEQQ Sbjct 175 RQEPKKAAAAAKTKQGDGFAAAIAS-VTEVDYQVGESVTVNDGPFANLAASISEINAEQQ 233 Query 214 KLKVLVSIFGRETPVELTFGQVSKI 238 KLKVLVSIFGRETPVEL+F QV+KI Sbjct 234 KLKVLVSIFGRETPVELSFNQVTKI 258 >gi|134103300|ref|YP_001108961.1| putative transcription antitermination regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004481|ref|ZP_06562454.1| putative transcription antitermination regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915923|emb|CAM06036.1| putative transcription antitermination regulator [Saccharopolyspora erythraea NRRL 2338] Length=283 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 156/205 (77%), Positives = 168/205 (82%), Gaps = 4/205 (1%) Query 34 PAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIK 93 P L+A LR PG+WYVVHSYAGYENKVK NLETR Q LDV DYIFQVEVPTEEVTEIK Sbjct 83 PVEELRAALRRAPGEWYVVHSYAGYENKVKTNLETRAQTLDVEDYIFQVEVPTEEVTEIK 142 Query 94 NGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLP 153 NGQRK V RKVLPGYILVRM+L D SW+AVRNTPGVTGF+GATS PS L++DDV+KFL P Sbjct 143 NGQRKLVQRKVLPGYILVRMELNDASWSAVRNTPGVTGFIGATSHPSPLSIDDVLKFLAP 202 Query 154 RGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQ 213 R K AK A AAA A VEVD+EVGES+TVMDGPFATLPATISEVNA+ Q Sbjct 203 RA--EKEAKPEAGKKAAAPAAAKPS--VEVDFEVGESITVMDGPFATLPATISEVNADAQ 258 Query 214 KLKVLVSIFGRETPVELTFGQVSKI 238 KLKVLVSIFGRETPVEL+F QVSKI Sbjct 259 KLKVLVSIFGRETPVELSFNQVSKI 283 >gi|284992892|ref|YP_003411446.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160] gi|284066137|gb|ADB77075.1| NusG antitermination factor [Geodermatophilus obscurus DSM 43160] Length=272 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 148/221 (67%), Positives = 174/221 (79%), Gaps = 5/221 (2%) Query 18 EANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGD 77 E++ D EE DPA A++ LRS+ GDWYV+HSYAGYENKVK NLE+R+Q+LD+ D Sbjct 57 ESSDLGDQTEDDEEADPAEAMRKVLRSQFGDWYVIHSYAGYENKVKTNLESRIQSLDMED 116 Query 78 YIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATS 137 YIFQ+EVPTEEVTEIKNG+R QVNRK LPGY+LVRMDL D+SW AVRNTPGVTGFVGATS Sbjct 117 YIFQIEVPTEEVTEIKNGKRTQVNRKKLPGYLLVRMDLNDESWGAVRNTPGVTGFVGATS 176 Query 138 RPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGP 197 RPS L++D+VV L P + + A ++ A A VD+EVGESVTVMDGP Sbjct 177 RPSPLSIDEVVSLLAPAATPQAARTTETTSTTTAAAP-----TTVVDFEVGESVTVMDGP 231 Query 198 FATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 FATLPATI+E+NAEQQKL+VLVSIFGRETPVEL+F QV KI Sbjct 232 FATLPATINEINAEQQKLQVLVSIFGRETPVELSFNQVQKI 272 >gi|258651255|ref|YP_003200411.1| NusG antitermination factor [Nakamurella multipartita DSM 44233] gi|258554480|gb|ACV77422.1| NusG antitermination factor [Nakamurella multipartita DSM 44233] Length=306 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/211 (72%), Positives = 173/211 (82%), Gaps = 11/211 (5%) Query 30 EEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEV 89 E+ DPA AL++ L+ G+WYVVHSYAGYENKVK NLETR+++LD+ DYIFQ+EVPTEEV Sbjct 105 EDEDPAEALRSALKRAAGEWYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEV 164 Query 90 TEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATS-RPSALALDDVV 148 TEIKNGQRKQV RKV PGYILVRMDLTD SW+AVRNTPGVTGFVGAT+ +PSAL +D+VV Sbjct 165 TEIKNGQRKQVQRKVYPGYILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVV 224 Query 149 KFLLPRGSTRKAAKGAASTAAAAEAGGLERPV-VEVDYEVGESVTVMDGPFATLPATISE 207 K L P RK A A + +A PV EVD+ +GESVTVMDGPFATLPATI+E Sbjct 225 KILTPTAP-RKPASVATTPGSA--------PVRTEVDFSIGESVTVMDGPFATLPATINE 275 Query 208 VNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 VNA+ QKLKVLVSIFGRETPVEL+F QV+KI Sbjct 276 VNADAQKLKVLVSIFGRETPVELSFSQVAKI 306 >gi|317125904|ref|YP_004100016.1| transcription antitermination protein nusG [Intrasporangium calvum DSM 43043] gi|315589992|gb|ADU49289.1| transcription antitermination protein nusG [Intrasporangium calvum DSM 43043] Length=292 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 140/217 (65%), Positives = 170/217 (79%), Gaps = 8/217 (3%) Query 23 QDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQV 82 +DA A A E DP AA KA+LRS+ GDW+VVHSYAGYEN+VKANLETR+Q L++ DYIF++ Sbjct 83 EDATAAAAEQDPVAAFKADLRSRAGDWFVVHSYAGYENRVKANLETRIQTLNMEDYIFEI 142 Query 83 EVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSAL 142 EVP EEVTEIKNGQ+K V R +PGY+LVRMDLTD+SW AVR+TPGVTGFVG +P L Sbjct 143 EVPMEEVTEIKNGQKKLVRRVRMPGYVLVRMDLTDESWGAVRHTPGVTGFVGNAHQPVPL 202 Query 143 ALDDVVKFLLPRGST-RKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATL 201 ++D+V L P + GA +AA ++P VD+EVGESVTVM+GPF TL Sbjct 203 SIDEVFTMLAPNLEVPTEGGSGAGRSAA-------KKPAAVVDFEVGESVTVMEGPFETL 255 Query 202 PATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238 PATISE+N++ QKLKVLVSIFGRETPVEL+FGQV+KI Sbjct 256 PATISEINSDTQKLKVLVSIFGRETPVELSFGQVAKI 292 >gi|271962615|ref|YP_003336811.1| transcription antiterminator-like protein [Streptosporangium roseum DSM 43021] gi|270505790|gb|ACZ84068.1| Transcription antiterminator-like protein [Streptosporangium roseum DSM 43021] Length=266 Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 133/208 (64%), Positives = 165/208 (80%), Gaps = 12/208 (5%) Query 31 EVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVT 90 +VDP K +LRS+ G+WYV+HSYAGYEN+VK+N+ETR Q+L++ DYIFQVEVPT VT Sbjct 71 DVDPVEEFKRQLRSQFGEWYVIHSYAGYENRVKSNIETRTQSLNMEDYIFQVEVPTHHVT 130 Query 91 EIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKF 150 E+K+G+R+ V +VLPGY+LVRMDLTD+SW+AVRNTPGVTGFVG +++PS L+LD+V K Sbjct 131 EVKSGKRQLVKERVLPGYVLVRMDLTDESWSAVRNTPGVTGFVGLSNKPSPLSLDEVAKL 190 Query 151 LLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNA 210 L P S A ++AA VD+E+GESVTVMDGPFATLPAT+SE++A Sbjct 191 LAPEPSEEVKKSTAKASAAT------------VDFEIGESVTVMDGPFATLPATVSEISA 238 Query 211 EQQKLKVLVSIFGRETPVELTFGQVSKI 238 E QKLKVLVSIFGRETPVEL+F QVSKI Sbjct 239 ESQKLKVLVSIFGRETPVELSFNQVSKI 266 >gi|269128551|ref|YP_003301921.1| NusG antitermination factor [Thermomonospora curvata DSM 43183] gi|268313509|gb|ACY99883.1| NusG antitermination factor [Thermomonospora curvata DSM 43183] Length=238 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/206 (66%), Positives = 158/206 (77%), Gaps = 11/206 (5%) Query 33 DPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEI 92 DP K ELR PG+WYVVHSYAGYEN+VKAN+ETR Q+L++ DYIFQVEVP EVTEI Sbjct 44 DPYEDFKRELRMLPGEWYVVHSYAGYENRVKANIETRTQSLNMEDYIFQVEVPQHEVTEI 103 Query 93 KNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLL 152 K G+R++VN K+LPGYILVRM+LTD+SWAAVRNTPGVTGFVG ++PS L+LD+V K L Sbjct 104 KQGKRQKVNEKMLPGYILVRMELTDESWAAVRNTPGVTGFVGLLNKPSPLSLDEVAKLLA 163 Query 153 PRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQ 212 P K + + V++EVGESVTVMDGPF TLPAT+SE+N EQ Sbjct 164 PPPEEEKGKAKEQTKVTST-----------VEFEVGESVTVMDGPFQTLPATVSEINVEQ 212 Query 213 QKLKVLVSIFGRETPVELTFGQVSKI 238 QKLKVLVSIFGRETPVEL+F QVSKI Sbjct 213 QKLKVLVSIFGRETPVELSFNQVSKI 238 >gi|72163058|ref|YP_290715.1| transcription antitermination protein NusG [Thermobifida fusca YX] gi|71916790|gb|AAZ56692.1| transcription antitermination protein nusG [Thermobifida fusca YX] Length=250 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 136/208 (66%), Positives = 163/208 (79%), Gaps = 11/208 (5%) Query 31 EVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVT 90 E+DP KAELR PG+WYVVH+YAGYEN+VKANLE R Q+L++ DYIFQVEVPT+EVT Sbjct 54 ELDPIEEFKAELRLLPGEWYVVHTYAGYENRVKANLENRTQSLNMEDYIFQVEVPTQEVT 113 Query 91 EIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKF 150 E+K+G+R+QV KVLPGY+LVRM+LTD+SWAAVR+TPGVTGFVG ++RP L+LD+V + Sbjct 114 EVKSGKRQQVTEKVLPGYVLVRMELTDESWAAVRHTPGVTGFVGLSNRPVPLSLDEVAEL 173 Query 151 LLPRGSTRKAAKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNA 210 L P T + + P EV+YE+GESVTVMDGPFATLPAT+SEVN Sbjct 174 LAPEPETEEEQAKKEAE-----------PRGEVEYEIGESVTVMDGPFATLPATVSEVNP 222 Query 211 EQQKLKVLVSIFGRETPVELTFGQVSKI 238 + QKLKVLVSIFGRETPVEL F QVSKI Sbjct 223 DTQKLKVLVSIFGRETPVELGFNQVSKI 250 Lambda K H 0.312 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 325878760174 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40