BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0658c
Length=238
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607798|ref|NP_215172.1| integral membrane protein [Mycobact... 444 4e-123
gi|15840061|ref|NP_335098.1| hypothetical protein MT0687 [Mycoba... 441 4e-122
gi|339630728|ref|YP_004722370.1| hypothetical protein MAF_06670 ... 440 9e-122
gi|289442054|ref|ZP_06431798.1| conserved membrane protein [Myco... 439 2e-121
gi|253797598|ref|YP_003030599.1| hypothetical protein TBMG_00669... 439 2e-121
gi|254549618|ref|ZP_05140065.1| putative integral membrane prote... 401 4e-110
gi|297633156|ref|ZP_06950936.1| hypothetical protein MtubK4_0348... 399 2e-109
gi|183980181|ref|YP_001848472.1| hypothetical protein MMAR_0147 ... 278 4e-73
gi|240168798|ref|ZP_04747457.1| putative integral membrane prote... 271 5e-71
gi|118470433|ref|YP_887778.1| integral membrane protein [Mycobac... 243 2e-62
gi|118619973|ref|YP_908305.1| hypothetical protein MUL_4950 [Myc... 236 2e-60
gi|331698508|ref|YP_004334747.1| abortive infection protein [Pse... 198 4e-49
gi|300783876|ref|YP_003764167.1| integral membrane protein [Amyc... 182 3e-44
gi|302525171|ref|ZP_07277513.1| integral membrane protein [Strep... 180 1e-43
gi|324999616|ref|ZP_08120728.1| abortive infection protein [Pseu... 180 2e-43
gi|134102491|ref|YP_001108152.1| integral membrane protein [Sacc... 179 4e-43
gi|256379922|ref|YP_003103582.1| abortive infection protein [Act... 172 4e-41
gi|257055026|ref|YP_003132858.1| putative metal-dependent membra... 171 8e-41
gi|134099045|ref|YP_001104706.1| integral membrane protein [Sacc... 142 3e-32
gi|291006857|ref|ZP_06564830.1| integral membrane protein [Sacch... 142 3e-32
gi|333919232|ref|YP_004492813.1| putative metal-dependent membra... 91.7 8e-17
gi|134102492|ref|YP_001108153.1| integral membrane protein [Sacc... 81.3 1e-13
gi|300783875|ref|YP_003764166.1| integral membrane protein [Amyc... 79.0 6e-13
gi|302525170|ref|ZP_07277512.1| predicted protein [Streptomyces ... 77.0 2e-12
gi|123968107|ref|YP_001008965.1| membrane-associated protease [P... 67.0 2e-09
gi|159903059|ref|YP_001550403.1| membrane-associated protease [P... 66.2 3e-09
gi|254525506|ref|ZP_05137558.1| possible membrane associated pro... 66.2 4e-09
gi|157412932|ref|YP_001483798.1| membrane-associated protease [P... 64.7 1e-08
gi|342932454|ref|ZP_08728701.1| CAAX amino terminal protease fam... 63.9 2e-08
gi|93005624|ref|YP_580061.1| abortive infection protein [Psychro... 63.2 3e-08
gi|33861073|ref|NP_892634.1| membrane-associated protease [Proch... 62.8 4e-08
gi|285808564|gb|ADC36085.1| hypothetical protein [uncultured bac... 62.4 6e-08
gi|229917841|ref|YP_002886487.1| Abortive infection protein [Exi... 62.0 7e-08
gi|116072899|ref|ZP_01470164.1| possible membrane associated pro... 61.6 1e-07
gi|71065348|ref|YP_264075.1| hypothetical protein Psyc_0788 [Psy... 61.6 1e-07
gi|87303751|ref|ZP_01086504.1| possible membrane associated prot... 61.6 1e-07
gi|126695880|ref|YP_001090766.1| membrane-associated protease [P... 61.2 1e-07
gi|145590419|ref|YP_001152421.1| abortive infection protein [Pyr... 60.5 2e-07
gi|148653532|ref|YP_001280625.1| abortive infection protein [Psy... 59.3 5e-07
gi|124025284|ref|YP_001014400.1| membrane-associated protease [P... 58.9 6e-07
gi|72383684|ref|YP_293039.1| metal-dependent membrane protease [... 58.9 6e-07
gi|257454431|ref|ZP_05619693.1| abortive infection protein [Enhy... 58.9 7e-07
gi|333369496|ref|ZP_08461609.1| abortive infection protein [Psyc... 57.8 1e-06
gi|78185223|ref|YP_377658.1| membrane associated protease [Synec... 57.0 2e-06
gi|284928805|ref|YP_003421327.1| putative metal-dependent membra... 57.0 2e-06
gi|257055025|ref|YP_003132857.1| CAAX amino terminal protease fa... 56.6 3e-06
gi|302870864|ref|YP_003839500.1| abortive infection protein [Cal... 55.8 5e-06
gi|312792400|ref|YP_004025323.1| abortive infection protein [Cal... 55.5 6e-06
gi|317127428|ref|YP_004093710.1| hypothetical protein Bcell_0697... 55.5 7e-06
gi|336425478|ref|ZP_08605499.1| hypothetical protein HMPREF0994_... 55.5 7e-06
>gi|15607798|ref|NP_215172.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|2143303|emb|CAB09376.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium tuberculosis
H37Rv]
Length=238
Score = 444 bits (1143), Expect = 4e-123, Method: Compositional matrix adjust.
Identities = 237/238 (99%), Positives = 238/238 (100%), Gaps = 0/238 (0%)
Query 1 VEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
+EAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA
Sbjct 1 MEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
Query 61 AGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
AGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA
Sbjct 61 AGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
Query 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA
Sbjct 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
Query 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP
Sbjct 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
>gi|15840061|ref|NP_335098.1| hypothetical protein MT0687 [Mycobacterium tuberculosis CDC1551]
gi|31791842|ref|NP_854335.1| integral membrane protein [Mycobacterium bovis AF2122/97]
gi|121636579|ref|YP_976802.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
57 more sequence titles
Length=238
Score = 441 bits (1134), Expect = 4e-122, Method: Compositional matrix adjust.
Identities = 236/238 (99%), Positives = 237/238 (99%), Gaps = 0/238 (0%)
Query 1 VEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
+EAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA
Sbjct 1 MEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
Query 61 AGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
AGLAILITRLRGNG RTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA
Sbjct 61 AGLAILITRLRGNGPRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
Query 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA
Sbjct 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
Query 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP
Sbjct 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
>gi|339630728|ref|YP_004722370.1| hypothetical protein MAF_06670 [Mycobacterium africanum GM041182]
gi|339330084|emb|CCC25739.1| putative conserved integral membrane protein [Mycobacterium africanum
GM041182]
Length=238
Score = 440 bits (1131), Expect = 9e-122, Method: Compositional matrix adjust.
Identities = 235/238 (99%), Positives = 236/238 (99%), Gaps = 0/238 (0%)
Query 1 VEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
+EAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA
Sbjct 1 MEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
Query 61 AGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
AGLAILITRLRGNG RTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPE NSA
Sbjct 61 AGLAILITRLRGNGPRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPETNSA 120
Query 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA
Sbjct 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
Query 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP
Sbjct 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
>gi|289442054|ref|ZP_06431798.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568596|ref|ZP_06448823.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289749161|ref|ZP_06508539.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289752704|ref|ZP_06512082.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
gi|289414973|gb|EFD12213.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289542350|gb|EFD45998.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689748|gb|EFD57177.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289693291|gb|EFD60720.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
Length=238
Score = 439 bits (1129), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 235/238 (99%), Positives = 236/238 (99%), Gaps = 0/238 (0%)
Query 1 VEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
+EAGRAD VAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA
Sbjct 1 MEAGRADIVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
Query 61 AGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
AGLAILITRLRGNG RTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA
Sbjct 61 AGLAILITRLRGNGPRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
Query 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA
Sbjct 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
Query 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP
Sbjct 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
>gi|253797598|ref|YP_003030599.1| hypothetical protein TBMG_00669 [Mycobacterium tuberculosis KZN
1435]
gi|289552912|ref|ZP_06442122.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
gi|297730136|ref|ZP_06959254.1| hypothetical protein MtubKR_03535 [Mycobacterium tuberculosis
KZN R506]
gi|313657463|ref|ZP_07814343.1| hypothetical protein MtubKV_03525 [Mycobacterium tuberculosis
KZN V2475]
gi|253319101|gb|ACT23704.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289437544|gb|EFD20037.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
gi|328457379|gb|AEB02802.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
Length=238
Score = 439 bits (1128), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 235/238 (99%), Positives = 236/238 (99%), Gaps = 0/238 (0%)
Query 1 VEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
+EAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA
Sbjct 1 MEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
Query 61 AGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
AGLAILITRL GNG RTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA
Sbjct 61 AGLAILITRLHGNGPRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSA 120
Query 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA
Sbjct 121 VVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFA 180
Query 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP
Sbjct 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
>gi|254549618|ref|ZP_05140065.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|339293693|gb|AEJ45804.1| hypothetical protein CCDC5079_0614 [Mycobacterium tuberculosis
CCDC5079]
gi|339297333|gb|AEJ49443.1| hypothetical protein CCDC5180_0606 [Mycobacterium tuberculosis
CCDC5180]
Length=218
Score = 401 bits (1031), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 216/218 (99%), Positives = 217/218 (99%), Gaps = 0/218 (0%)
Query 21 LVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLR 80
+VVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNG RTDLR
Sbjct 1 MVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNGPRTDLR 60
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFL 140
LRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFL
Sbjct 61 LRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFL 120
Query 141 VVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIA 200
VVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIA
Sbjct 121 VVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIA 180
Query 201 LARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
LARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP
Sbjct 181 LARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 218
>gi|297633156|ref|ZP_06950936.1| hypothetical protein MtubK4_03480 [Mycobacterium tuberculosis
KZN 4207]
Length=218
Score = 399 bits (1025), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 215/218 (99%), Positives = 216/218 (99%), Gaps = 0/218 (0%)
Query 21 LVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLR 80
+VVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRL GNG RTDLR
Sbjct 1 MVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLHGNGPRTDLR 60
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFL 140
LRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFL
Sbjct 61 LRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFL 120
Query 141 VVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIA 200
VVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIA
Sbjct 121 VVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIA 180
Query 201 LARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
LARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP
Sbjct 181 LARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 218
>gi|183980181|ref|YP_001848472.1| hypothetical protein MMAR_0147 [Mycobacterium marinum M]
gi|183173507|gb|ACC38617.1| conserved hypothetical secreted protein [Mycobacterium marinum
M]
Length=247
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/228 (69%), Positives = 197/228 (87%), Gaps = 0/228 (0%)
Query 8 TVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILI 67
T AP+HRWGLGAF++VELV+L++ST LA+V+ GP SA +++LA+AAPTV+AAGLA+ I
Sbjct 17 TAAPAHRWGLGAFVLVELVYLLSSTLLALVVASAGPRSAALISLAVAAPTVIAAGLAVFI 76
Query 68 TRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGG 127
T RGNG RTDLRL +WR +RLGL+FG GG++V++PAS++Y +I GP+ANSA+ ++FG
Sbjct 77 TMRRGNGPRTDLRLGGTWRDVRLGLVFGLGGLVVSVPASMLYASITGPDANSALYKVFGD 136
Query 128 VRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFA 187
VRASWPWA+ VF+VVVFV PLCEEI+YRGLLWGA++RRWG+W ALVV+T VFALAH EF
Sbjct 137 VRASWPWAVAVFIVVVFVGPLCEEILYRGLLWGALERRWGQWVALVVSTAVFALAHFEFT 196
Query 188 RAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAI 235
RAPLL+V+A+PIALAR YSGGL ASIV HQVTN LPG+VL+L LTG +
Sbjct 197 RAPLLLVIAVPIALARLYSGGLWASIVAHQVTNSLPGLVLMLILTGTM 244
>gi|240168798|ref|ZP_04747457.1| putative integral membrane protein [Mycobacterium kansasii ATCC
12478]
Length=251
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 163/225 (73%), Positives = 189/225 (84%), Gaps = 0/225 (0%)
Query 14 RWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGN 73
RWGLGAFL+V LV +AS + AVVL G GP+SAG+LALA+ APTV+AAGLA+LIT LRGN
Sbjct 27 RWGLGAFLLVGLVHFLASAAFAVVLGGRGPLSAGMLALAVGAPTVLAAGLAVLITTLRGN 86
Query 74 GLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWP 133
G RTDL+L WSW G+ LGL+FGFGG+ VT+PAS++Y + GP A SAV +FGGV+ASWP
Sbjct 87 GPRTDLKLHWSWHGVGLGLLFGFGGLFVTVPASVLYAKVAGPGAKSAVASVFGGVQASWP 146
Query 134 WALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLV 193
WA+ VF +VVFV PL EEII+RGLLWGAVDRR G WAAL VTTVVFALAHLE RAPLLV
Sbjct 147 WAVAVFALVVFVGPLGEEIIFRGLLWGAVDRRRGPWAALAVTTVVFALAHLELTRAPLLV 206
Query 194 VVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISLP 238
VVAIPIALAR YSGGLLASIV HQVTNLLPGI+L+L + G + +P
Sbjct 207 VVAIPIALARLYSGGLLASIVAHQVTNLLPGIILMLAVAGVMPMP 251
>gi|118470433|ref|YP_887778.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118171720|gb|ABK72616.1| probable conserved integral membrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=216
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/213 (61%), Positives = 163/213 (77%), Gaps = 1/213 (0%)
Query 21 LVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLR 80
++VE+V+L S + A+ P G++ + +A PTV+AA LA+LI R+RGNG RTD R
Sbjct 1 MLVEVVYLAVSGAFALAAARAEP-PVGLILVTIAVPTVLAASLAVLIARIRGNGARTDFR 59
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFL 140
LRWSWR L +G+ FGFGG+ VT+PA+ +Y +IVG + SAV +F GVRA+WP AL VF
Sbjct 60 LRWSWRELWIGIAFGFGGLFVTLPAAALYLSIVGSDTTSAVGEVFEGVRATWPLALAVFA 119
Query 141 VVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIA 200
V FVAP+CEEI+YRGLLWGA+++RWGR A +V+TVVFALAH E RAPLL+VVAIPIA
Sbjct 120 TVTFVAPVCEEIVYRGLLWGALEQRWGRIVAALVSTVVFALAHFEPVRAPLLLVVAIPIA 179
Query 201 LARFYSGGLLASIVTHQVTNLLPGIVLLLGLTG 233
+AR Y+ GLLA I HQVTNLLPG+VL+ GL G
Sbjct 180 VARLYTDGLLAGIAAHQVTNLLPGLVLMYGLMG 212
>gi|118619973|ref|YP_908305.1| hypothetical protein MUL_4950 [Mycobacterium ulcerans Agy99]
gi|118572083|gb|ABL06834.1| conserved hypothetical secreted protein [Mycobacterium ulcerans
Agy99]
Length=206
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/202 (67%), Positives = 171/202 (85%), Gaps = 0/202 (0%)
Query 34 LAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLRLRWSWRGLRLGLM 93
LA+V+ GP SA +++LA+AAPTV+AAGLA+ IT RGNG RTDLR+ +WR +RLGL+
Sbjct 2 LALVVASAGPRSAALISLAVAAPTVIAAGLAVFITMRRGNGPRTDLRMGGTWRDVRLGLV 61
Query 94 FGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEII 153
FG GG++V++ AS++Y +I GP+ANSA+ ++FG VRASWPWA+ VF+VVVFV PLCEEI+
Sbjct 62 FGLGGLVVSVAASMLYASITGPDANSALYKVFGDVRASWPWAVAVFIVVVFVGPLCEEIL 121
Query 154 YRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASI 213
YRGLLWGA++RRWG+W ALVV+T VFALAH EF RAPLL+V+A+PIALAR YSGGL ASI
Sbjct 122 YRGLLWGALERRWGQWVALVVSTAVFALAHFEFTRAPLLLVIAVPIALARLYSGGLWASI 181
Query 214 VTHQVTNLLPGIVLLLGLTGAI 235
HQVTN LPG+VL+L LTG +
Sbjct 182 AAHQVTNSLPGLVLMLILTGTM 203
>gi|331698508|ref|YP_004334747.1| abortive infection protein [Pseudonocardia dioxanivorans CB1190]
gi|326953197|gb|AEA26894.1| Abortive infection protein [Pseudonocardia dioxanivorans CB1190]
Length=391
Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/211 (55%), Positives = 148/211 (71%), Gaps = 3/211 (1%)
Query 13 HRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSA-GVLALALAAPTVVAAGLAILITRLR 71
HRWG A+L+ E VFL S L VL G G LA+ L PT+ +A +AI+ T++R
Sbjct 162 HRWGFPAYLLAEAVFLGVSALLGAVLITAGTAPGVGTLAVLLGVPTICSATVAIVATKVR 221
Query 72 GNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPE-ANSAVVRIFGGVRA 130
GNG + DL LRWSWR + +G +FG GG+L+T+PASLVY AIVG E ANSAV +F +RA
Sbjct 222 GNGPKIDLALRWSWRDVGIGALFGIGGLLLTVPASLVYIAIVGAENANSAVGDVFEHLRA 281
Query 131 SWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRW-GRWAALVVTTVVFALAHLEFARA 189
+ A++VFL+V V P+CEEI+YRGLLWGA ++ RW A +TT++FALAH EF R
Sbjct 282 TPAQAVLVFLLVALVGPICEEIVYRGLLWGATEKHGANRWLAFALTTIIFALAHFEFTRT 341
Query 190 PLLVVVAIPIALARFYSGGLLASIVTHQVTN 220
PLL+VVAIPI LAR +G + ASIV HQ+ N
Sbjct 342 PLLLVVAIPIGLARAVTGTITASIVAHQINN 372
>gi|300783876|ref|YP_003764167.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|299793390|gb|ADJ43765.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|340525270|gb|AEK40475.1| integral membrane protein [Amycolatopsis mediterranei S699]
Length=267
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/236 (46%), Positives = 151/236 (64%), Gaps = 9/236 (3%)
Query 11 PSHRWGLGAFLVVELVFLVASTSLAVVL--TGHGPVSAGVLALALAAPTVVAAGLAILIT 68
P HRWG GAFL+VE V L ++ ++V++ TG GP+ V+ L PT++AAG+A+LIT
Sbjct 32 PRHRWGFGAFLLVEGVLLASAAFVSVLVGNTGPGPLPMRVVLLGTMLPTMIAAGVAVLIT 91
Query 69 RLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGP-EANSAVVRIFGG 127
+RGNG +DLRL W W ++ G +G G++ T A+ ++T +VG A SA+ +
Sbjct 92 FVRGNGPLSDLRLEWRWADVKTGFRYGCVGLVFTTLAAYLWTRLVGDANATSAISALVED 151
Query 128 VRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDR------RWGRWAALVVTTVVFAL 181
R S ALV+F+ + + P+CEEIIYRGLLWGA ++ RWGR AA +++T VFA
Sbjct 152 RRMSVSAALVMFVYLWLLGPICEEIIYRGLLWGAAEQLQWRSERWGRVAAFLLSTAVFAA 211
Query 182 AHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAISL 237
+HLE R LL+V+A+PI L R +G L SIV HQV N LP + +LLG G S
Sbjct 212 SHLEPLRTTLLLVIAVPIGLVRLVTGRLPGSIVAHQVNNFLPALTILLGALGVASF 267
>gi|302525171|ref|ZP_07277513.1| integral membrane protein [Streptomyces sp. AA4]
gi|302434066|gb|EFL05882.1| integral membrane protein [Streptomyces sp. AA4]
Length=244
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/241 (47%), Positives = 151/241 (63%), Gaps = 12/241 (4%)
Query 8 TVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHG----PVSAGVLALALAAPTVVAAGL 63
T P HRWG GAFL+VE V L+AS + L+G P+ G + L PT++AAG+
Sbjct 5 TAFPPHRWGFGAFLLVEAV-LLASAAFIGALSGPTAAGRPLPIGTVLLGTMLPTMIAAGV 63
Query 64 AILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGP-EANSAVV 122
A+L+T LRGNG + DLRL W W + GL FG G+++T ++ V+T +VG +A SA+
Sbjct 64 AVLVTVLRGNGPKLDLRLEWRWADVWTGLKFGLLGLVLTSLSAYVWTQLVGTADATSAIS 123
Query 123 RIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDR------RWGRWAALVVTT 176
+ + S P A V+F + + P+CEEIIYRGLLWGAV+R RWGR AA +++T
Sbjct 124 ALVDDRKMSVPAAAVMFGYLWLLGPICEEIIYRGLLWGAVERLQWRSERWGRVAAFLLST 183
Query 177 VVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAIS 236
VFA +HLE R LL+V++IPI LAR +G L SIV H V N LP + +LLG G S
Sbjct 184 AVFAASHLEPLRTTLLLVISIPIGLARLSTGRLAGSIVAHAVNNFLPAVAILLGALGLAS 243
Query 237 L 237
Sbjct 244 F 244
>gi|324999616|ref|ZP_08120728.1| abortive infection protein [Pseudonocardia sp. P1]
Length=258
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/234 (48%), Positives = 145/234 (62%), Gaps = 6/234 (2%)
Query 4 GRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGL 63
G + P RWGL AFLVVE VFL +S + + + SAG + LA+A PTV+AA
Sbjct 26 GLDPSPTPRVRWGLWAFLVVEAVFLGSSALVGLAIDVD---SAGEVLLAIAVPTVLAALT 82
Query 64 AILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVR 123
I T RG+G DL LR+ W + GL+ G G+ VT+PA+ Y +VGP+ ++V
Sbjct 83 CIGWTLWRGDGPVADLGLRFRWEDVGAGLLIGIAGLFVTVPAAFGYLYLVGPDLTTSVGV 142
Query 124 IFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRW--GRWAALVVTTVVFAL 181
F G+R +WP AL V +V +AP+CEEI+YRGLLW AV +W RW +VTT VFA+
Sbjct 143 AFEGIRTTWPVALAVMFGIVVIAPVCEEIVYRGLLWNAV-AKWVANRWVVFLVTTAVFAV 201
Query 182 AHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAI 235
AHLE RAPLL VV +P+ +AR +G L A +V H V N LPG+ L L L G +
Sbjct 202 AHLELLRAPLLFVVTLPLGVARLLTGRLTAGVVAHAVNNFLPGLALALMLVGVV 255
>gi|134102491|ref|YP_001108152.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|291004118|ref|ZP_06562091.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|133915114|emb|CAM05227.1| probable conserved integral membrane protein [Saccharopolyspora
erythraea NRRL 2338]
Length=255
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/223 (47%), Positives = 140/223 (63%), Gaps = 4/223 (1%)
Query 11 PSHRWGLGAFLVVELVFLVASTSLAVV---LTGHGPVSAGVLALALAAPTVVAAGLAILI 67
P HRWG GAF + + VF++ S LA L G L L L PT++A +A++I
Sbjct 25 PVHRWGFGAFFLAQAVFVLVSVMLAAYFGSLHDEGSRFGVALVLMLMVPTLLAGAVAVVI 84
Query 68 TRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGG 127
T +RGNG R D L W W+ + GL G G++ T AS ++ + VGP+A S V + G
Sbjct 85 TMVRGNGPRVDFGLEWRWKDVTTGLGIGAIGLVTTTIASTIWLSWVGPDAQSTVSGLLDG 144
Query 128 VRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDR-RWGRWAALVVTTVVFALAHLEF 186
VR A+V+FL V +AP+CEE++YRGLLWGA++R RW R A V++T VFA+ HLE
Sbjct 145 VRLPPALAVVIFLHVWLIAPICEELLYRGLLWGAMERLRWSRVTAFVLSTAVFAIGHLEP 204
Query 187 ARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLL 229
R LL+V+AIPI +AR +G L AS+V HQV N LP + LLL
Sbjct 205 ERTLLLLVIAIPIGVARMVTGRLTASVVAHQVNNFLPAVGLLL 247
>gi|256379922|ref|YP_003103582.1| abortive infection protein [Actinosynnema mirum DSM 43827]
gi|255924225|gb|ACU39736.1| Abortive infection protein [Actinosynnema mirum DSM 43827]
Length=238
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/229 (42%), Positives = 144/229 (63%), Gaps = 3/229 (1%)
Query 4 GRADTVAPS-HRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAG 62
G A AP+ RWG GAFLVV+ VF++++ + G + + PT++AA
Sbjct 2 GFAPEPAPTGQRWGFGAFLVVQAVFVLSAVFITAAGREFGVDPVTFVLVGAMTPTLLAAA 61
Query 63 LAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPE-ANSAV 121
A+LIT+LRGNG DLRL W+W +++G G G+++T A+L ++ +VG + A SA+
Sbjct 62 TAVLITKLRGNGPFVDLRLEWNWADVKVGFKLGLLGLVLTYVAALTWSRLVGDQNATSAI 121
Query 122 VRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRR-WGRWAALVVTTVVFA 180
+ G A+ +F V F+ P+CEE+IYRGLLWGA++R+ W RWAA ++T +FA
Sbjct 122 GELVDGAALPLSAAIAMFCYVCFIGPVCEELIYRGLLWGAIERQGWSRWAAFTLSTAIFA 181
Query 181 LAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLL 229
+HLE R LL+V+++PI +AR + L AS+V H V N LPG+ +LL
Sbjct 182 ASHLEPIRTVLLIVISLPIGIARLITRRLTASVVAHVVNNFLPGLTMLL 230
>gi|257055026|ref|YP_003132858.1| putative metal-dependent membrane protease [Saccharomonospora
viridis DSM 43017]
gi|256584898|gb|ACU96031.1| predicted metal-dependent membrane protease [Saccharomonospora
viridis DSM 43017]
Length=280
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/237 (45%), Positives = 145/237 (62%), Gaps = 15/237 (6%)
Query 12 SHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLA-----LALAAPTVVAAGLAIL 66
+HRWG GAFL VE V L + + VL GP + L + PTV AA +A+
Sbjct 46 THRWGFGAFLFVEGVLLATAAFVGAVL---GPNTVESLPVRDVLIGTMTPTVFAALVALA 102
Query 67 ITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFG 126
IT+LRGNG DL L W W +++GL FG G++ T+ LV+T VG + ++ +R+
Sbjct 103 ITKLRGNGPAADLCLVWRWDDVKIGLKFGVLGLVCTVVGVLVWTRAVGEDNATSAIRMLV 162
Query 127 GVRA-SWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDR------RWGRWAALVVTTVVF 179
+ S A+ +FL + + P+CEEIIYRGLLWGA +R RWGR+AA V++T VF
Sbjct 163 EDKPMSMSAAVTMFLYLWLLGPICEEIIYRGLLWGAAERLGWGSERWGRFAAFVLSTAVF 222
Query 180 ALAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLGLTGAIS 236
A++HLE R LL+V+AIPI LAR +G LL SIV HQ+ N LP + +LL G ++
Sbjct 223 AVSHLEPLRTSLLLVIAIPIGLARLVTGRLLGSIVAHQMNNFLPALAILLTSLGVLT 279
>gi|134099045|ref|YP_001104706.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|133911668|emb|CAM01781.1| probable conserved integral membrane protein [Saccharopolyspora
erythraea NRRL 2338]
Length=228
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/195 (46%), Positives = 126/195 (65%), Gaps = 7/195 (3%)
Query 42 GPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRT-----DLRLRWSWRGLRLGLMFGF 96
G V A L +AL+ P V+AA +A+ T G G RT +L + W WR + GL+ G
Sbjct 30 GAVPAAPLLVALSVPGVLAALVALAGTAAFGAGPRTGRITRELAVCWRWRAVGHGLLIGV 89
Query 97 GGMLVTIPASLVYTAIVGP-EANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYR 155
G+++T+PA++++ VGP +A SA+ +F G + P A+ FLVV +AP+ EE+++R
Sbjct 90 AGLVLTLPAAVLWAQWVGPAQAESALGEVFHGRQFGIPVAVAGFLVVWLLAPIYEEVLFR 149
Query 156 GLLWGAVDR-RWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIV 214
G+LW A + RW W L VTTV+F+L+HLE RAPLL VV+IP+ LAR +G LL SIV
Sbjct 150 GVLWRAFEHWRWNMWGILAVTTVIFSLSHLEPLRAPLLAVVSIPVGLARLLTGNLLGSIV 209
Query 215 THQVTNLLPGIVLLL 229
HQV NLLP + + L
Sbjct 210 AHQVNNLLPALFVFL 224
>gi|291006857|ref|ZP_06564830.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
Length=231
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/195 (46%), Positives = 126/195 (65%), Gaps = 7/195 (3%)
Query 42 GPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRT-----DLRLRWSWRGLRLGLMFGF 96
G V A L +AL+ P V+AA +A+ T G G RT +L + W WR + GL+ G
Sbjct 33 GAVPAAPLLVALSVPGVLAALVALAGTAAFGAGPRTGRITRELAVCWRWRAVGHGLLIGV 92
Query 97 GGMLVTIPASLVYTAIVGP-EANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYR 155
G+++T+PA++++ VGP +A SA+ +F G + P A+ FLVV +AP+ EE+++R
Sbjct 93 AGLVLTLPAAVLWAQWVGPAQAESALGEVFHGRQFGIPVAVAGFLVVWLLAPIYEEVLFR 152
Query 156 GLLWGAVDR-RWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIV 214
G+LW A + RW W L VTTV+F+L+HLE RAPLL VV+IP+ LAR +G LL SIV
Sbjct 153 GVLWRAFEHWRWNMWGILAVTTVIFSLSHLEPLRAPLLAVVSIPVGLARLLTGNLLGSIV 212
Query 215 THQVTNLLPGIVLLL 229
HQV NLLP + + L
Sbjct 213 AHQVNNLLPALFVFL 227
>gi|333919232|ref|YP_004492813.1| putative metal-dependent membrane protease [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481453|gb|AEF40013.1| Predicted metal-dependent membrane protease [Amycolicicoccus
subflavus DQS3-9A1]
Length=307
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 93/246 (38%), Positives = 128/246 (53%), Gaps = 27/246 (10%)
Query 5 RADTVA----PSHRWGLGAFLVVELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVA 60
R+D A P RWGLGA VV V L A ++ P S +L LA+ PT A
Sbjct 62 RSDEAALRRQPGQRWGLGAAAVVLAVNLFGFVIGAFLV--EDPASPAIL-LAIILPTFSA 118
Query 61 AGLAILITRLRGNGLRTDL----RLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPE 116
A +A+LIT RGNG D ++R R GL FG G ++ I + + +V +
Sbjct 119 ALVAVLITFARGNGPVVDFGLPTKMREFTRQCATGLAFGGGAVVGGIILAFLLFLVVD-D 177
Query 117 ANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDR-RWGR------- 168
S+V+ G + S ALV++ V AP+ EE+I+RG+LWGA++R R+ R
Sbjct 178 VPSSVLEETGSMPVSVRIALVMW--VWIGAPIAEEVIFRGILWGALERYRFVRRRVGILV 235
Query 169 -----WAALVVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLP 223
W+ L VTTVVFAL H+EF R +L+ LAR Y+G +L+S V H V N LP
Sbjct 236 ALSSNWSVLAVTTVVFALWHVEFWRLAILLFAGAMFGLARLYTGSVLSSTVAHIVNNTLP 295
Query 224 GIVLLL 229
+L
Sbjct 296 AFSVLF 301
>gi|134102492|ref|YP_001108153.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|291004117|ref|ZP_06562090.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|133915115|emb|CAM05228.1| probable conserved integral membrane protein [Saccharopolyspora
erythraea NRRL 2338]
Length=327
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/228 (30%), Positives = 112/228 (50%), Gaps = 14/228 (6%)
Query 1 VEAGRADTVAPSHRWGLGAFLVVELVFLVASTSLAVVL----TGHGPVSAGVLALALAA- 55
+EA R ++A WG AF V F +A ++ V+ +G P L L
Sbjct 94 LEAARRGSLA----WGFAAFFVGYGAFYLAGQVVSAVMPSRESGFDPADPPALGPLLLLV 149
Query 56 --PTVVAAGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIV 113
P ++ + + + +RGNG+R D + R +++GL G +L++ L+ AI
Sbjct 150 FVPNLLLGLVPAIFSWVRGNGVRADFGIVPRLRDVKVGLACGGVALLLSFVLGLIMVAIN 209
Query 114 GPEANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDR-RWGRWAAL 172
G + + R+ G ++ W + L APL EE++ RG LWGA++ R R+A L
Sbjct 210 GQPPETGISRLMQGEKSVW--LFLFALFAFLGAPLTEELLMRGALWGALEHYRVPRYAIL 267
Query 173 VVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTN 220
++TT++FA H E R P+L V + + AR +G AS++ H N
Sbjct 268 LLTTLIFAFIHQEVWRTPVLFVGGLAMGAARMITGRTGASVIAHATNN 315
>gi|300783875|ref|YP_003764166.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|299793389|gb|ADJ43764.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|340525269|gb|AEK40474.1| integral membrane protein [Amycolatopsis mediterranei S699]
Length=241
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/161 (34%), Positives = 87/161 (55%), Gaps = 3/161 (1%)
Query 72 GNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPE--ANSAVVRIFGGVR 129
G GLRTD L +WR +R+GL G ++V +L+ A+ G + ++S + +
Sbjct 79 GEGLRTDFGLVPTWRDVRIGLACGVLALVVGYLLNLMLIAVYGADDVSDSPLTDLADTFD 138
Query 130 ASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAV-DRRWGRWAALVVTTVVFALAHLEFAR 188
W ++ ++V+ AP+ EE++ RG LW A+ R WA LV+T++VFA H E R
Sbjct 139 GDTVWLVLAAVIVIAGAPITEELLVRGTLWNALWFHRVPPWAVLVLTSLVFAQLHGEPTR 198
Query 189 APLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLL 229
L I + LAR+ SG + A ++ H NL P ++L +
Sbjct 199 TIALFGQGIAMGLARYLSGRVSAGVIAHAANNLPPAVLLFV 239
>gi|302525170|ref|ZP_07277512.1| predicted protein [Streptomyces sp. AA4]
gi|302434065|gb|EFL05881.1| predicted protein [Streptomyces sp. AA4]
Length=240
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/173 (36%), Positives = 84/173 (49%), Gaps = 4/173 (2%)
Query 62 GLAILITRLR-GNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVG-PEANS 119
GL I LR G+GL D LR R LR+GL G ++ + A+ G E +
Sbjct 67 GLGPAIASLRYGSGLERDFGLRVRGRDLRIGLACGLLALVAGFVLNAAEIAVFGGDEVSD 126
Query 120 AVVRIFGGVRASWP-WALVVFLVVVFVAPLCEEIIYRGLLWGAV-DRRWGRWAALVVTTV 177
+ + V P W + L +V PL EE++ RG LW A+ R W LV+T++
Sbjct 127 SPLTDLPDVSGDSPVWLIATALALVVAVPLTEELLLRGALWKALLHYRIPPWVVLVLTSL 186
Query 178 VFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLLG 230
VFAL H E R L + + LAR YSG AS++ H NL P ++L G
Sbjct 187 VFALLHGETTRTIALFGQGLVLGLARHYSGRTSASVLAHAANNLPPAVLLFTG 239
>gi|123968107|ref|YP_001008965.1| membrane-associated protease [Prochlorococcus marinus str. AS9601]
gi|123198217|gb|ABM69858.1| Possible membrane associated protease [Prochlorococcus marinus
str. AS9601]
Length=453
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/158 (28%), Positives = 80/158 (51%), Gaps = 4/158 (2%)
Query 67 ITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIP----ASLVYTAIVGPEANSAVV 122
I L G L++++ ++ ++ G G L +P SL+ +++ + S +
Sbjct 284 IKSLNGEFTFKKDYLQFNFLPIKYAIIQGIKGWLTIVPFVLLISLIMNSLIDNQNGSNPL 343
Query 123 RIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALA 182
++ ++F+ +APL EEII+RG+L + R +G + ++V+ +FALA
Sbjct 344 LEIVLNNNNYLSFFLLFVTTTLLAPLFEEIIFRGILLPTLSRDFGVISGIIVSAFIFALA 403
Query 183 HLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTN 220
HL P L V+ I +A+ R SG L +S++ H + N
Sbjct 404 HLSLGEMPPLFVLGIGLAITRIASGSLFSSVIMHSLWN 441
>gi|159903059|ref|YP_001550403.1| membrane-associated protease [Prochlorococcus marinus str. MIT
9211]
gi|159888235|gb|ABX08449.1| Possible membrane associated protease [Prochlorococcus marinus
str. MIT 9211]
Length=453
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/188 (28%), Positives = 93/188 (50%), Gaps = 10/188 (5%)
Query 41 HGPVSAGVLALALAAPTVVAAGLAILITRLRG-NGLRTDLR--LRWSWRGLRLGLMFGFG 97
H P L + + + L I +LR G+ +R ++W + + G+M
Sbjct 256 HSPTKES-LTVFVGYSAMTLPSLVIFRQQLRMLKGMEPPIRGWMQWGIKPVNKGVMQALQ 314
Query 98 GMLVTIPASLVYTAIVG-----PEANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEI 152
G L+ +P L+ + +VG P ++ ++ + + W + ++FL V +APL EE
Sbjct 315 GWLMVMPFVLLTSWLVGFFLEDPGGSNPLLEMVLSSKNYWALS-ILFLTTVVLAPLFEEF 373
Query 153 IYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLAS 212
I+RG L + + GR ++++ +VFALAHL P L+V+ I +AL R +G L
Sbjct 374 IFRGALLPVLVKSQGRAFGVILSALVFALAHLSIGELPPLLVLGIGLALLRISTGRLFPC 433
Query 213 IVTHQVTN 220
++ H + N
Sbjct 434 VIMHSLWN 441
>gi|254525506|ref|ZP_05137558.1| possible membrane associated protease [Prochlorococcus marinus
str. MIT 9202]
gi|221536930|gb|EEE39383.1| possible membrane associated protease [Prochlorococcus marinus
str. MIT 9202]
Length=453
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query 67 ITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIP----ASLVYTAIVGPEANSAVV 122
I L G L++++ ++ ++ G G L +P SL+ +++ + S +
Sbjct 284 IKSLHGQFTFKKDYLQFNFLPIKYSIIQGIKGWLTIVPFVLLISLIMNSLIDNQNGSNPL 343
Query 123 RIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALA 182
++ ++F+ +APL EEII+RG+L + R +G + ++V+ +FALA
Sbjct 344 LEIVLNNNNYLSFFLLFVTTTILAPLFEEIIFRGILLPTLSRDFGIISGIIVSAFIFALA 403
Query 183 HLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTN 220
HL P L V+ I + + R SG L +S++ H + N
Sbjct 404 HLSLGEMPPLFVLGIGLGITRIASGSLFSSVIMHSLWN 441
>gi|157412932|ref|YP_001483798.1| membrane-associated protease [Prochlorococcus marinus str. MIT
9215]
gi|157387507|gb|ABV50212.1| Possible membrane associated protease [Prochlorococcus marinus
str. MIT 9215]
Length=453
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/158 (26%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query 67 ITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIP----ASLVYTAIVGPEANSAVV 122
I L G L++++ ++ ++ G G L +P SL+ +++ + S +
Sbjct 284 IKSLHGQFTFKKDYLQFNFLPIKYSIIQGIKGWLTIVPFVLLISLIMNSLIDNQNGSNPL 343
Query 123 RIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALA 182
++ ++F+ +APL EEII+RG+L + + +G + ++V+ +FALA
Sbjct 344 LEIVLNNNNYLSFFLLFVTTTILAPLFEEIIFRGILLPTLSKDFGIISGIIVSAFIFALA 403
Query 183 HLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTN 220
HL P L V+ I + + R SG L +S++ H + N
Sbjct 404 HLSLGEMPPLFVLGIGLGITRIASGSLFSSVIMHSLWN 441
>gi|342932454|ref|ZP_08728701.1| CAAX amino terminal protease family protein [Streptococcus ictaluri
707-05]
Length=205
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/187 (33%), Positives = 96/187 (52%), Gaps = 11/187 (5%)
Query 51 LALAAPTVVAAGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYT 110
L LA +V A L +L R R ++ L ++W+ L +F ++ I +L+
Sbjct 18 LGLAYLVLVGASLMVLWRRFRTKEVKVTLHFSFTWKDLAYLGLFWLSARVIAIVGTLLNQ 77
Query 111 AIVGPE--ANSAVVRIFGG-VRASWP-WALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRW 166
AI G E AN A +++ + +P ++L+ FLV+ F+AP+ EE+ +RG + +D
Sbjct 78 AISGQETTANDAGLQVLAHFMTGGFPLFSLLYFLVIAFIAPIMEELAFRG--YPTLDLFK 135
Query 167 GR---WAALVVTTVVFALAHLEFARAPLLVV-VAIPIALARFYSGGLLASIVTHQVTNLL 222
G+ WAA +VT V+F+L H A + + + + LA G LL SI H + NL
Sbjct 136 GQFNVWAA-IVTLVIFSLPHATNAVEFITYAGMGVLLYLAYRRRGNLLDSIFLHILNNLP 194
Query 223 PGIVLLL 229
I LLL
Sbjct 195 AAIYLLL 201
>gi|93005624|ref|YP_580061.1| abortive infection protein [Psychrobacter cryohalolentis K5]
gi|92393302|gb|ABE74577.1| Abortive infection protein [Psychrobacter cryohalolentis K5]
Length=265
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/190 (27%), Positives = 100/190 (53%), Gaps = 18/190 (9%)
Query 42 GPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLV 101
G V+++++ V+ ++ L+ R+RG L+ L LR + +G++ G +L+
Sbjct 71 GSNDGTVVSISIMIGCVLLVAISALVIRVRGGNLKQYLVLRPFSLAVGMGMI---GLLLI 127
Query 102 TIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGA 161
+ S T ++ + V ++ V + W L++F +V+ VAP+ EE+I+RG+LW A
Sbjct 128 FMIGSQALTYMLDKSPLAFVDPLYQSVSSVW---LLIFAMVI-VAPIYEELIFRGILWSA 183
Query 162 VDRRW---------GRWAALVVTTVVFALAHLEFA--RAPLLVVVAIPIALARFYSGGLL 210
+ ++ G A +VT+++FA+ HL++ +VV+A+ AR SG L+
Sbjct 184 IAEQFTSPPDTEYRGAIVASLVTSLIFAVIHLQYGIYEISTIVVLALLFCYARIKSGSLI 243
Query 211 ASIVTHQVTN 220
++ H + N
Sbjct 244 LPMLLHIINN 253
>gi|33861073|ref|NP_892634.1| membrane-associated protease [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639805|emb|CAE18975.1| Possible membrane associated protease [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length=452
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/202 (26%), Positives = 98/202 (49%), Gaps = 9/202 (4%)
Query 23 VELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLRLR 82
+ LV LVAS +L++ LT + G L +A+ ++ + ++ + D +
Sbjct 244 ITLVELVAS-NLSIELTQSLKIFFGYLFMAIPPLLIIYYQIKSFEKKI---IFKKD-YFQ 298
Query 83 WSWRGLRLGLMFGFGGMLVTIP----ASLVYTAIVGPEANSAVVRIFGGVRASWPWALVV 138
+++ ++ GF G L+ IP SL+ +V + S + ++ +++
Sbjct 299 FNFLPIKDSFFQGFKGFLMIIPFVLLVSLIMNLLVDNQNGSNPLLEIVLNSNNYVSFVLL 358
Query 139 FLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIP 198
FL F+AP+ EE+I+RG+L + R +G + ++ +FALAHL L + I
Sbjct 359 FLTTTFLAPIFEEVIFRGVLLPILSREFGIILGITISAFIFALAHLSIGEMIPLFTLGIG 418
Query 199 IALARFYSGGLLASIVTHQVTN 220
+ RF SG L +S++ H + N
Sbjct 419 LGTTRFISGRLSSSVIMHSLWN 440
>gi|285808564|gb|ADC36085.1| hypothetical protein [uncultured bacterium 164]
Length=289
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/216 (29%), Positives = 103/216 (48%), Gaps = 32/216 (14%)
Query 24 ELVFLVASTSLAVVLTGHGPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDL---- 79
++V + ++ L G + A +L LALA +++TR + R L
Sbjct 75 QIVAFAKTDPTSIFLQIVGILPAHILTLALAW---------LIVTRFKRYSFRETLGWET 125
Query 80 -RLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVV 138
R RW W L GG +V AS V T PE + ++R+ RA+ +V
Sbjct 126 GRFRW-WHYCIL-----LGGFMVL--ASGVNTYF--PEQENELLRMLQSSRAA---VYIV 172
Query 139 FLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHL-----EFARAPLLV 193
+ F AP+ EE++YRG+L+ A RR+G A+ V T +FA+ H+ ++ LL
Sbjct 173 AFIATFTAPVVEEVVYRGVLYSAFQRRFGILASFVFVTFLFAIVHVPQYYPSYSTIFLLF 232
Query 194 VVAIPIALARFYSGGLLASIVTHQVTNLLPGIVLLL 229
++++ + R +G LL I+ H + N L +L+L
Sbjct 233 LLSLTLTSVRVKTGNLLPCIILHTLFNGLQSAMLIL 268
>gi|229917841|ref|YP_002886487.1| Abortive infection protein [Exiguobacterium sp. AT1b]
gi|229469270|gb|ACQ71042.1| Abortive infection protein [Exiguobacterium sp. AT1b]
Length=231
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/165 (30%), Positives = 86/165 (53%), Gaps = 13/165 (7%)
Query 67 ITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFG 126
+ + + G++++L W GL G++ +G ++V A+L+ TAI G S +
Sbjct 77 LKQYKAQGIQSNLNDTVKWIGL--GILMQYGLVIV---ANLIETAITGDLVESMNTQNIA 131
Query 127 GVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEF 186
+ P ++ L VV + P+ EEI++R +L+G ++ R+G W A V++++FAL H +
Sbjct 132 EMVEVIP---LMILPVVLLGPIIEEILFRHILFGNLNARFGFWIAFGVSSILFALIHQD- 187
Query 187 ARAPLLVVVAIPIALARFYSGG--LLASIVTHQVTNLLPGIVLLL 229
LV +A+ A + Y+ L+ I H N L +VL L
Sbjct 188 --NRFLVYIAMSFAFSYAYAKTRRLIVPIAIHAFNNALVMLVLFL 230
>gi|116072899|ref|ZP_01470164.1| possible membrane associated protease [Synechococcus sp. BL107]
gi|116064425|gb|EAU70186.1| possible membrane associated protease [Synechococcus sp. BL107]
Length=420
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/146 (33%), Positives = 76/146 (53%), Gaps = 8/146 (5%)
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPAS-----LVYTAIVGPEANSAVVRIFGGVRASWPWA 135
L+W WR + GG L+ P L+ + P ++ ++ + G + P A
Sbjct 267 LQWRWRPWPGAISSAVGGWLMVTPVVVATGWLLVRLVGDPGGSNPLLELVLGSQD--PLA 324
Query 136 LVVF-LVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVV 194
LV+ L V +APL EEII+RG L + +RWG +V++ ++FA+AH+ L V
Sbjct 325 LVLLGLTAVVLAPLFEEIIFRGALLPVLAKRWGTAVGVVLSALLFAMAHISIGELAPLTV 384
Query 195 VAIPIALARFYSGGLLASIVTHQVTN 220
+ I +AL R +G LL S++ H + N
Sbjct 385 LGIGLALVRVSTGRLLPSVLMHALWN 410
>gi|71065348|ref|YP_264075.1| hypothetical protein Psyc_0788 [Psychrobacter arcticus 273-4]
gi|71038333|gb|AAZ18641.1| hypothetical protein Psyc_0788 [Psychrobacter arcticus 273-4]
Length=265
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/190 (28%), Positives = 99/190 (53%), Gaps = 18/190 (9%)
Query 42 GPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLV 101
G V+++++ V+ ++ LI R+RG L+ L L + +G++ G +L+
Sbjct 71 GSNDGTVVSISIMIGCVLLVAISSLIIRMRGGNLKQYLALTPFSLAVGMGMI---GLLLI 127
Query 102 TIPASLVYTAIVGPEANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGA 161
+ S T ++ + V ++ V + W L+VF +V+ VAP+ EE+I+RG+LW A
Sbjct 128 FMIGSQALTYLLDKSPLAFVDPLYQSVSSVW---LLVFAMVI-VAPIYEELIFRGILWSA 183
Query 162 VDRRW---------GRWAALVVTTVVFALAHLEFA--RAPLLVVVAIPIALARFYSGGLL 210
+ ++ G A +VT+++FA+ HL++ +VV+A+ AR SG L+
Sbjct 184 LAEQFAASSDTEYRGAIVASLVTSLIFAVIHLQYGIYEISTIVVLALIFCYARIKSGSLI 243
Query 211 ASIVTHQVTN 220
++ H + N
Sbjct 244 LPMLLHIINN 253
>gi|87303751|ref|ZP_01086504.1| possible membrane associated protease [Synechococcus sp. WH 5701]
gi|87281716|gb|EAQ73691.1| possible membrane associated protease [Synechococcus sp. WH 5701]
Length=351
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/146 (33%), Positives = 76/146 (53%), Gaps = 8/146 (5%)
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPAS-----LVYTAIVGPEANSAVVRIFGGVRASWPWA 135
L+W WR + GG L+ P L+ + P ++ ++ + G + P A
Sbjct 198 LQWRWRPWPGAISSAVGGWLMVTPVVVATGWLLVRLVGDPGGSNPLLELVLGSQD--PLA 255
Query 136 LVVF-LVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVV 194
LV+ L V +APL EEII+RG L + +RWG +V++ ++FA+AH+ L V
Sbjct 256 LVLLGLTAVVLAPLFEEIIFRGALLPVLAKRWGTAVGVVLSALLFAMAHISIGELAPLTV 315
Query 195 VAIPIALARFYSGGLLASIVTHQVTN 220
+ I +AL R +G LL S++ H + N
Sbjct 316 LGIGLALVRVSTGRLLPSVLMHALWN 341
>gi|126695880|ref|YP_001090766.1| membrane-associated protease [Prochlorococcus marinus str. MIT
9301]
gi|126542923|gb|ABO17165.1| Possible membrane associated protease [Prochlorococcus marinus
str. MIT 9301]
Length=453
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (39%), Positives = 46/75 (62%), Gaps = 0/75 (0%)
Query 146 APLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALARFY 205
APL EEII+RG+L + R +G + ++++ +FALAHL P L V+ I + + R
Sbjct 367 APLFEEIIFRGILLPTLSRNFGVISGIIISAFIFALAHLSLGEMPPLFVLGIGLGITRIA 426
Query 206 SGGLLASIVTHQVTN 220
SG L +S++ H + N
Sbjct 427 SGSLFSSVIMHSLWN 441
>gi|145590419|ref|YP_001152421.1| abortive infection protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282187|gb|ABP49769.1| Abortive infection protein [Pyrobaculum arsenaticum DSM 13514]
Length=196
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/81 (47%), Positives = 53/81 (66%), Gaps = 3/81 (3%)
Query 143 VFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAH-LEFARAPLLVVVAIPIAL 201
VF+APL EE+I+RG+L+ V RRWG A V +++VFAL H L A P+ +VA+ +A
Sbjct 111 VFLAPLVEEVIFRGILFEEVRRRWGPAPAYVASSLVFALLHRLGLAAVPIF-IVALALAF 169
Query 202 ARFYSGGLLASIVTHQVTNLL 222
A ++ GL ASI+ H N L
Sbjct 170 A-YHKWGLPASIMLHATQNTL 189
>gi|148653532|ref|YP_001280625.1| abortive infection protein [Psychrobacter sp. PRwf-1]
gi|148572616|gb|ABQ94675.1| Abortive infection protein [Psychrobacter sp. PRwf-1]
Length=272
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/93 (36%), Positives = 58/93 (63%), Gaps = 8/93 (8%)
Query 134 WALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRW----GRWAALVVTTVVFALAHLEFARA 189
W L+ +VV AP+ EE+++RG+LW A ++ G W A +VT+++FA+ HL++A
Sbjct 171 WLLIAVMVVA--APIYEEVMFRGILWKATKEQFEGETGVWVASLVTSILFAIIHLQYAFY 228
Query 190 PLLVV--VAIPIALARFYSGGLLASIVTHQVTN 220
+ V+ +A+ ++ AR SG L+ I+ H + N
Sbjct 229 EMSVIFLLALLLSYARAKSGSLMLPILIHMMNN 261
>gi|124025284|ref|YP_001014400.1| membrane-associated protease [Prochlorococcus marinus str. NATL1A]
gi|123960352|gb|ABM75135.1| Possible membrane associated protease [Prochlorococcus marinus
str. NATL1A]
Length=448
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/154 (30%), Positives = 81/154 (53%), Gaps = 6/154 (3%)
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPASLV----YTAIVGPEANSA-VVRIFGGVRASWPWA 135
L+W R ++ GL G L+ +P L+ I+G + S ++ + G +P
Sbjct 294 LQWKIRPIKEGLFKSISGWLMIMPLVLLIGWLMNEIIGDQGGSNPLLELVLGSDEFFPLF 353
Query 136 LVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVV 195
L++ VV +AP+ EE+++RG+L + + G+ + ++++ ++FALAHL P L V+
Sbjct 354 LLLITTVV-LAPVFEELVFRGILLPVLVSKVGKASGVLLSALIFALAHLSVGELPPLFVL 412
Query 196 AIPIALARFYSGGLLASIVTHQVTNLLPGIVLLL 229
I + L R SG L + H + N + I LLL
Sbjct 413 GIGLGLMRLSSGRLFPCALMHSLWNGVTFISLLL 446
>gi|72383684|ref|YP_293039.1| metal-dependent membrane protease [Prochlorococcus marinus str.
NATL2A]
gi|72003534|gb|AAZ59336.1| metal-dependent membrane protease [Prochlorococcus marinus str.
NATL2A]
Length=448
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/154 (30%), Positives = 81/154 (53%), Gaps = 6/154 (3%)
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPASLV----YTAIVGPEANSA-VVRIFGGVRASWPWA 135
L+W R ++ GL G L+ +P L+ I+G + S ++ + G +P
Sbjct 294 LQWKIRPIKEGLFKSISGWLMIMPLVLLIGWLMNEIIGDQGGSNPLLELVLGSDEFFPLF 353
Query 136 LVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVV 195
L++ VV +AP+ EE+++RG+L + + G+ + ++++ ++FALAHL P L V+
Sbjct 354 LLLITTVV-LAPVFEELVFRGILLPVLVSKVGKASGVLLSALIFALAHLSVGELPPLFVL 412
Query 196 AIPIALARFYSGGLLASIVTHQVTNLLPGIVLLL 229
I + L R SG L + H + N + I LLL
Sbjct 413 GIGLGLMRLSSGRLFPCALMHSLWNGVTFISLLL 446
>gi|257454431|ref|ZP_05619693.1| abortive infection protein [Enhydrobacter aerosaccus SK60]
gi|257448197|gb|EEV23178.1| abortive infection protein [Enhydrobacter aerosaccus SK60]
Length=244
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/185 (27%), Positives = 89/185 (49%), Gaps = 14/185 (7%)
Query 41 HGPVSAGVLALALAAPTVVAAGLAILITRLRGNGLRTDLRLR-WSWRGLRLGLMFGFGGM 99
G + +++LAL + G L R + + ++ L L+ ++W L +
Sbjct 59 QGSENGTLMSLALGFTLAMVIGCVYLFIRFKNSRIKDYLALKPFTWYQL-----LQCSAL 113
Query 100 LVTIPASL-VYTAIVGPEANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLL 158
L+ + + + T +G E + + W L+V +VVF AP+ EE+I+RG +
Sbjct 114 LIVLNVIINLVTVWLGREPMMFMDNLAESAHPRW---LLVLAMVVF-APIYEEVIFRGFM 169
Query 159 W-GAVDRRWGRWAALVVTTVVFALAHLEFARAPLL--VVVAIPIALARFYSGGLLASIVT 215
W G + G W A V+T+++FA+ H+++ LL +A+ + R SG LL +V
Sbjct 170 WTGLASSKLGMWGASVLTSILFAVIHMQYGVVELLGIFCLAMLFSYGRIMSGSLLLPVVL 229
Query 216 HQVTN 220
H + N
Sbjct 230 HMMNN 234
>gi|333369496|ref|ZP_08461609.1| abortive infection protein [Psychrobacter sp. 1501(2011)]
gi|332971009|gb|EGK09981.1| abortive infection protein [Psychrobacter sp. 1501(2011)]
Length=297
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/97 (35%), Positives = 60/97 (62%), Gaps = 8/97 (8%)
Query 130 ASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRW----GRWAALVVTTVVFALAHL- 184
A+ W L++ +VV+ AP+ EE+++RG+LW AV ++ G W A +VT+++F++ HL
Sbjct 192 ANPKWLLILTMVVI--APIYEEVMFRGILWSAVREQFEGAKGVWVASLVTSILFSIIHLQ 249
Query 185 -EFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTN 220
EF ++ ++A+ ++ AR S L I+ H + N
Sbjct 250 YEFYEMSVIFLLALLLSYARARSNSLYLPIILHIINN 286
>gi|78185223|ref|YP_377658.1| membrane associated protease [Synechococcus sp. CC9902]
gi|78169517|gb|ABB26614.1| possible membrane associated protease [Synechococcus sp. CC9902]
Length=420
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/146 (31%), Positives = 74/146 (51%), Gaps = 8/146 (5%)
Query 81 LRWSWRGLRLGLMFGFGGMLVTIPAS-----LVYTAIVGPEANSAVVRIFGGVRASWPWA 135
L+W W+ + GG L+ P L+ + P ++ ++ + G + P A
Sbjct 267 LQWRWQPWPGAISSAIGGWLMVTPVVVATGWLLVRLVGDPGGSNPLLELVLGSQD--PLA 324
Query 136 LVVF-LVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVV 194
L + L V +APL EE I+RG L + +RWG +V++ ++FA+AH+ L V
Sbjct 325 LFLLGLTAVVLAPLFEETIFRGALLPVLAKRWGTAGGVVLSALLFAMAHISIGELAPLTV 384
Query 195 VAIPIALARFYSGGLLASIVTHQVTN 220
+ I +AL R +G LL S++ H + N
Sbjct 385 LGIGLALVRVSTGRLLPSVLMHALWN 410
>gi|284928805|ref|YP_003421327.1| putative metal-dependent membrane protease [cyanobacterium UCYN-A]
gi|284809264|gb|ADB94969.1| predicted metal-dependent membrane protease [cyanobacterium UCYN-A]
Length=517
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/141 (31%), Positives = 70/141 (50%), Gaps = 20/141 (14%)
Query 92 LMFGFGGMLVTIPASLVYTAIVGPEANSAVVRIFGGVRASWP-----------WALVVF- 139
+++G G LV +P+ L+ + I +GG S P +AL +F
Sbjct 370 IIWGISGYLVALPSVLIISLIND--------NFWGGKGGSNPLLSLVLENQDLFALAIFY 421
Query 140 LVVVFVAPLCEEIIYRGLLWGAVDRRWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPI 199
L AP EEII+RG L ++ R W A++V++++FA+AHL + L + I +
Sbjct 422 LTAAVAAPFYEEIIFRGFLLPSLTRYISPWGAIIVSSLIFAVAHLNISEILPLTTLGIIL 481
Query 200 ALARFYSGGLLASIVTHQVTN 220
+ SG LL+SI+ H + N
Sbjct 482 GVVYTRSGNLLSSILMHSLWN 502
>gi|257055025|ref|YP_003132857.1| CAAX amino terminal protease family [Saccharomonospora viridis
DSM 43017]
gi|256584897|gb|ACU96030.1| CAAX amino terminal protease family [Saccharomonospora viridis
DSM 43017]
Length=251
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/230 (31%), Positives = 109/230 (48%), Gaps = 15/230 (6%)
Query 2 EAGRADTVAPSHR--------WGLGAFLVVELVFLVASTSLAVVLTGH-----GPVSAGV 48
E AD +PS R WGL AF++ ++ + S L ++ G P G
Sbjct 7 EGSPADEGSPSIRDGLVLGAHWGLLAFIISLSLYYLLSLLLTGLVFGGLVSTWDPSDLGP 66
Query 49 LALALAAPTVVAAGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLV 108
L L P ++ + +R G+G+R D L + R +R+GL G +L +L+
Sbjct 67 LVLLAFLPNLLLGLGPVYASRKWGSGMRGDFGLLPTGRDVRVGLACGGFSLLTAYLLNLL 126
Query 109 YTAIVGPEA-NSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDR-RW 166
+ G E + + + + + W ++ +VVV VAPL EE+++RG LWG + R
Sbjct 127 LLQVYGSEYLSDSATNVLQNLMSGIGWLILAAIVVVVVAPLTEELLFRGALWGGLAYYRV 186
Query 167 GRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTH 216
W LV+T +VFA H E +R L I I AR +G + ASIV H
Sbjct 187 PPWVILVLTALVFAQVHGEPSRMLALFGQGIAIGAARMITGRVSASIVAH 236
>gi|302870864|ref|YP_003839500.1| abortive infection protein [Caldicellulosiruptor obsidiansis
OB47]
gi|302573723|gb|ADL41514.1| Abortive infection protein [Caldicellulosiruptor obsidiansis
OB47]
Length=257
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/87 (37%), Positives = 50/87 (58%), Gaps = 1/87 (1%)
Query 145 VAPLCEEIIYRGLLWGAVDR-RWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALAR 203
VAP EE I+RGL++G + + R + A+VV ++F L HL + + I +ALA
Sbjct 130 VAPFFEEFIFRGLIFGVMQKSRLNIFVAIVVQALLFGLIHLNLYQGIFAFFIGIFLALAL 189
Query 204 FYSGGLLASIVTHQVTNLLPGIVLLLG 230
+++G + +SIV H N L IV+L
Sbjct 190 YWTGSIWSSIVMHFTVNSLAVIVILFS 216
>gi|312792400|ref|YP_004025323.1| abortive infection protein [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312179540|gb|ADQ39710.1| Abortive infection protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length=257
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/87 (37%), Positives = 50/87 (58%), Gaps = 1/87 (1%)
Query 145 VAPLCEEIIYRGLLWGAVDR-RWGRWAALVVTTVVFALAHLEFARAPLLVVVAIPIALAR 203
VAP EE I+RGL++G + + R + A+VV ++F L HL + + I +ALA
Sbjct 130 VAPFFEEFIFRGLIFGVMQKNRLNIFVAIVVQALLFGLIHLNLYQGIFAFFIGIFLALAL 189
Query 204 FYSGGLLASIVTHQVTNLLPGIVLLLG 230
+++G + +SIV H N L IV+L
Sbjct 190 YWTGSIWSSIVMHFTVNSLAVIVILFS 216
>gi|317127428|ref|YP_004093710.1| hypothetical protein Bcell_0697 [Bacillus cellulosilyticus DSM
2522]
gi|315472376|gb|ADU28979.1| Abortive infection protein [Bacillus cellulosilyticus DSM 2522]
Length=249
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/127 (31%), Positives = 64/127 (51%), Gaps = 4/127 (3%)
Query 61 AGLAILITRLRGNGLRTDLRLRWSWRGLRLG--LMFGFGGMLVTIPASLVYTAIVGPEAN 118
G+AI++ L +R L+ +S++ L+ G +F ++ A + + E
Sbjct 74 EGIAIVLAILIFKSVRNFLKGAFSFKPLKQGKTYLFLLAAFVINFVAQFLIMNVFQLEDG 133
Query 119 SAVVRIFGGVRASWPWALVVFLVVVF--VAPLCEEIIYRGLLWGAVDRRWGRWAALVVTT 176
+ V F S+ W + FL + F V P+ EEI+YRGLL G + RR+ LVV++
Sbjct 134 TGQVDTFALGDISFHWLNIFFLYLGFTIVTPIKEEILYRGLLHGFLARRYHFLIGLVVSS 193
Query 177 VVFALAH 183
V+F L H
Sbjct 194 VIFGLLH 200
>gi|336425478|ref|ZP_08605499.1| hypothetical protein HMPREF0994_01505 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336012053|gb|EGN41979.1| hypothetical protein HMPREF0994_01505 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length=306
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/170 (30%), Positives = 88/170 (52%), Gaps = 12/170 (7%)
Query 51 LALAAPTVVAAGLAILITRLRGNGLRTDLRLRWSWRGLRLGLMFGFGGMLVTIPASLVYT 110
L LA P A LA+L +R + N + +L+ S + + F G P + +
Sbjct 44 LILAVP----AFLAVLTSREKPNRVLGFHKLKVSSVFMIILYTFLMG------PLTTLLN 93
Query 111 AIVGPEANSAVVRIFGGVRASWPWALVVFLVVVFVAPLCEEIIYRGLLWGAVDRRWGRWA 170
AI ++AVV I G V + P+ L FL+ VF P+CEE+ +RG+++ +
Sbjct 94 AISMLFVDNAVVSISGEV-LNLPFLLTFFLMAVF-GPVCEELCFRGVVYRGYLKSGNVVG 151
Query 171 ALVVTTVVFALAHLEFARAPLLVVVAIPIALARFYSGGLLASIVTHQVTN 220
A+++++++F L H+ F +AP + + +A+ +G L +SI+ H V N
Sbjct 152 AVLLSSLLFGLMHMNFNQAPYAFAIGVSMAVLVEATGSLWSSILMHVVFN 201
Lambda K H
0.329 0.143 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 325878760174
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40