BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0660c

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840063|ref|NP_335100.1|  hypothetical protein MT0689 [Mycoba...   154    5e-36
gi|15607800|ref|NP_215174.1|  hypothetical protein Rv0660c [Mycob...   153    7e-36


>gi|15840063|ref|NP_335100.1| hypothetical protein MT0689 [Mycobacterium tuberculosis CDC1551]
 gi|167967494|ref|ZP_02549771.1| hypothetical protein MtubH3_05442 [Mycobacterium tuberculosis 
H37Ra]
 gi|254230988|ref|ZP_04924315.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 24 more sequence titles
 Length=83

 Score =  154 bits (388),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENA  60
           MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENA
Sbjct  3   MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENA  62

Query  61  LAEIADWGPAEDWADWADAAR  81
           LAEIADWGPAEDWADWADAAR
Sbjct  63  LAEIADWGPAEDWADWADAAR  83


>gi|15607800|ref|NP_215174.1| hypothetical protein Rv0660c [Mycobacterium tuberculosis H37Rv]
 gi|31791844|ref|NP_854337.1| hypothetical protein Mb0679c [Mycobacterium bovis AF2122/97]
 gi|121636581|ref|YP_976804.1| hypothetical protein BCG_0709c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 50 more sequence titles
 Length=81

 Score =  153 bits (387),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENA  60
           MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENA
Sbjct  1   MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENA  60

Query  61  LAEIADWGPAEDWADWADAAR  81
           LAEIADWGPAEDWADWADAAR
Sbjct  61  LAEIADWGPAEDWADWADAAR  81



Lambda     K      H
   0.320    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128409240708




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40