BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0661c

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607801|ref|NP_215175.1|  hypothetical protein Rv0661c [Mycob...   285    2e-75
gi|167967493|ref|ZP_02549770.1|  hypothetical protein MtubH3_0543...   279    9e-74
gi|333989224|ref|YP_004521838.1|  hypothetical protein JDM601_058...   171    3e-41
gi|258593755|emb|CBE70096.1|  conserved protein of unknown functi...  57.0    1e-06
gi|254167943|ref|ZP_04874791.1|  hypothetical protein ABOONEI_90 ...  51.6    4e-05
gi|254168119|ref|ZP_04874966.1|  hypothetical protein ABOONEI_736...  51.2    5e-05
gi|340627856|ref|YP_004746308.1|  hypothetical protein MCAN_28851...  50.1    1e-04
gi|15610000|ref|NP_217379.1|  hypothetical protein Rv2863 [Mycoba...  48.1    5e-04
gi|256824109|ref|YP_003148069.1|  nucleic acid-binding protein [K...  45.4    0.003
gi|337278769|ref|YP_004618240.1|  hypothetical protein Rta_11360 ...  40.0    0.100
gi|85713897|ref|ZP_01044886.1|  hypothetical protein NB311A_07073...  38.9    0.27 
gi|147679127|ref|YP_001213342.1|  nucleic acid-binding protein [P...  37.0    1.1  
gi|225181869|ref|ZP_03735305.1|  PilT protein domain protein [Det...  36.2    1.6  
gi|220934529|ref|YP_002513428.1|  peptidase S49 [Thioalkalivibrio...  35.8    2.1  
gi|308273612|emb|CBX30214.1|  unknown protein [uncultured Desulfo...  35.8    2.4  
gi|158336541|ref|YP_001517715.1|  hypothetical protein AM1_3405 [...  35.0    4.0  
gi|77556075|gb|ABA98871.1|  retrotransposon protein, putative, un...  34.3    5.5  
gi|334346465|ref|YP_004555017.1|  diguanylate cyclase with PAS/PA...  33.9    8.2  
gi|289447452|ref|ZP_06437196.1|  toxin [Mycobacterium tuberculosi...  33.9    9.2  
gi|340626846|ref|YP_004745298.1|  hypothetical protein MCAN_18531...  33.5    9.9  


>gi|15607801|ref|NP_215175.1| hypothetical protein Rv0661c [Mycobacterium tuberculosis H37Rv]
 gi|15840064|ref|NP_335101.1| hypothetical protein MT0690 [Mycobacterium tuberculosis CDC1551]
 gi|31791845|ref|NP_854338.1| hypothetical protein Mb0680c [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=145

 Score =  285 bits (729),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)

Query  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60
            MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA
Sbjct  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60

Query  61   AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP  120
            AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP
Sbjct  61   AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP  120

Query  121  AFADLSDVVHVIPDAAGMVSLLGDR  145
            AFADLSDVVHVIPDAAGMVSLLGDR
Sbjct  121  AFADLSDVVHVIPDAAGMVSLLGDR  145


>gi|167967493|ref|ZP_02549770.1| hypothetical protein MtubH3_05437 [Mycobacterium tuberculosis 
H37Ra]
 gi|254549621|ref|ZP_05140068.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|339293694|gb|AEJ45805.1| hypothetical protein CCDC5079_0615 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297334|gb|AEJ49444.1| hypothetical protein CCDC5180_0607 [Mycobacterium tuberculosis 
CCDC5180]
Length=143

 Score =  279 bits (714),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  3    VLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAA  62
            +LDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAA
Sbjct  1    MLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAA  60

Query  63   LGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAF  122
            LGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAF
Sbjct  61   LGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAF  120

Query  123  ADLSDVVHVIPDAAGMVSLLGDR  145
            ADLSDVVHVIPDAAGMVSLLGDR
Sbjct  121  ADLSDVVHVIPDAAGMVSLLGDR  143


>gi|333989224|ref|YP_004521838.1| hypothetical protein JDM601_0584 [Mycobacterium sp. JDM601]
 gi|333485192|gb|AEF34584.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143

 Score =  171 bits (433),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 93/148 (63%), Positives = 112/148 (76%), Gaps = 8/148 (5%)

Query  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60
            MIVLDTTVLVYAKGA+H  R+PCRDL+AA+A +RI ATTT EVIQEFVH+RARRR R+DA
Sbjct  1    MIVLDTTVLVYAKGADHRFREPCRDLIAAVAADRIEATTTPEVIQEFVHIRARRRGRNDA  60

Query  61   AALGRVTMPNCSRRYSPSIEATS---KRGLTLFETTPGLEACDAVLAAVAASAGATALVS  117
            A LGR    + +   +P +       +RGLT+FETTP + A D+VLAAVA SAGA  LVS
Sbjct  61   ATLGR----SYAELLAPLLTVAGDHLERGLTMFETTPSVGAVDSVLAAVAKSAGAV-LVS  115

Query  118  ADPAFADLSDVVHVIPDAAGMVSLLGDR  145
            AD AF+DL D+ HV+PD AG+  LLGD 
Sbjct  116  ADGAFSDLPDITHVVPDTAGVAGLLGDN  143


>gi|258593755|emb|CBE70096.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=143

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 38/134 (29%), Positives = 62/134 (47%), Gaps = 1/134 (0%)

Query  4    LDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAAL  63
            LDT + +YA G EHP++ PC  ++  +A + + A T AEV+QE ++      +      L
Sbjct  5    LDTNIFMYAAGREHPMKGPCVAILRRVALDELEALTNAEVLQEILYRYRAIEEGERGLHL  64

Query  64   GRVTMPNCSRRYSPSIEATSKRGLTLFETTPGL-EACDAVLAAVAASAGATALVSADPAF  122
             R+ +        P   A  +R   L      +  + DAV AA A + G   ++S D  F
Sbjct  65   ARLAVDQVGGEILPVTLADMQRAFDLVARYRAMITSRDAVHAATALNHGLKHIISVDSHF  124

Query  123  ADLSDVVHVIPDAA  136
              +  ++ V P  A
Sbjct  125  DVIEGIIRVDPRKA  138


>gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
 gi|289595943|ref|YP_003482639.1| PilT protein domain protein [Aciduliprofundum boonei T469]
 gi|197622986|gb|EDY35553.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
 gi|289533730|gb|ADD08077.1| PilT protein domain protein [Aciduliprofundum boonei T469]
Length=141

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 33/128 (26%), Positives = 58/128 (46%), Gaps = 2/128 (1%)

Query  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60
            MI +DT++ +YA G EHP ++P   L+  IA   I A    EV+QE  H     + +   
Sbjct  1    MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG  60

Query  61   AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP  120
              L +  +    R YS  I + + R + + E    + + DA+  A   +     + + D 
Sbjct  61   IQLAKNIISLVPRIYSIEI-SDAIRAMDILERY-DITSRDAIHMAFMLNRNIKEVCTYDR  118

Query  121  AFADLSDV  128
             F  + ++
Sbjct  119  HFFRIEEI  126


>gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
 gi|197622885|gb|EDY35453.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
Length=141

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 33/128 (26%), Positives = 58/128 (46%), Gaps = 2/128 (1%)

Query  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60
            MI +DT++ +YA G EHP ++P   L+  IA   I A    EV+QE  H     + +   
Sbjct  1    MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG  60

Query  61   AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP  120
              L +  +    R YS  I + + R + + E    + + DA+  A   +     + + D 
Sbjct  61   IQLAKNIISLVPRIYSIEI-SDAIRAMDILERY-DITSRDAIHIAFMLNRNIKEVCTYDR  118

Query  121  AFADLSDV  128
             F  + ++
Sbjct  119  HFFRIEEI  126


>gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851 [Mycobacterium canettii CIPT 
140010059]
 gi|340006046|emb|CCC45216.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=126

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 39/125 (32%), Positives = 56/125 (45%), Gaps = 6/125 (4%)

Query  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV--HVRARRRDRS  58
            MI +DT V +YA G +HPLR P R+ +    + +    T+AEV+QE +  +V   R    
Sbjct  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEVMQELLNAYVPVGRNSTL  60

Query  59   DAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSA  118
            D+A    +T+        P   A      TL    PGL A D +  A     G T + + 
Sbjct  61   DSA----LTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTF  116

Query  119  DPAFA  123
            D   A
Sbjct  117  DHTLA  121


>gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycobacterium tuberculosis H37Rv]
 gi|15842406|ref|NP_337443.1| hypothetical protein MT2932 [Mycobacterium tuberculosis CDC1551]
 gi|31794040|ref|NP_856533.1| hypothetical protein Mb2888 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=126

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 38/125 (31%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV--HVRARRRDRS  58
            MI +DT V +YA G +HPLR P R+ +    + +    T+AE +QE +  +V   R    
Sbjct  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60

Query  59   DAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSA  118
            D+A    +T+        P   A      TL    PGL A D +  A     G T + + 
Sbjct  61   DSA----LTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTF  116

Query  119  DPAFA  123
            D   A
Sbjct  117  DHTLA  121


>gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
 gi|256687502|gb|ACV05304.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus 
sedentarius DSM 20547]
Length=137

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 39/121 (33%), Positives = 61/121 (51%), Gaps = 3/121 (2%)

Query  2    IVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAA  61
            + +D+T+L++A G +H +R P R  + A A   +A   + E  QEF+  R R+     A 
Sbjct  4    VFIDSTILLHAAGGDHAMRAPSRRWLEAAASGGMALHASVEAGQEFLFHRLRKSTPEQAT  63

Query  62   ALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPA  121
            A  +  + +    + P  E   +R + L   T  L   DA+ AA A +AG T +VSAD  
Sbjct  64   A--QFGLIDGLITWHPFDEEVLRRSVAL-AATGALGGRDAMHAATALAAGFTEIVSADRD  120

Query  122  F  122
            F
Sbjct  121  F  121


>gi|337278769|ref|YP_004618240.1| hypothetical protein Rta_11360 [Ramlibacter tataouinensis TTB310]
 gi|334729845|gb|AEG92221.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=153

 Score = 40.0 bits (92),  Expect = 0.100, Method: Compositional matrix adjust.
 Identities = 35/127 (28%), Positives = 53/127 (42%), Gaps = 1/127 (0%)

Query  2    IVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAA  61
            +  DT + +Y  GA       C +L+ A A +RI   T    + E +    +  D    A
Sbjct  17   VYFDTNIFIYVLGASQRYAALCLELLQACARQRILGCTGDVTLAELLVKPLQANDAQAVA  76

Query  62   ALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPA  121
            A+  + + + S           +R   L     GL+   A+  A A  AGAT LVS D  
Sbjct  77   AVRELLVEDGSIALHSHSRKAFERAAAL-RARHGLKMVHALQLATALEAGATCLVSNDRQ  135

Query  122  FADLSDV  128
            F  L+D+
Sbjct  136  FPSLADI  142


>gi|85713897|ref|ZP_01044886.1| hypothetical protein NB311A_07073 [Nitrobacter sp. Nb-311A]
 gi|85699023|gb|EAQ36891.1| hypothetical protein NB311A_07073 [Nitrobacter sp. Nb-311A]
Length=151

 Score = 38.9 bits (89),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 40/121 (34%), Positives = 56/121 (47%), Gaps = 8/121 (6%)

Query  2    IVLDTTVLVYAKGAEH-PLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60
            + LDT +L YA+G      RD   +LV  +  E  AA    +V+ E  +V  R+  RS A
Sbjct  3    VALDTNILAYAEGVNGVEKRDIVLELVRNLPQE--AAIVPVQVLGELFNVLTRKAGRSRA  60

Query  61   AALGRVTMPNCSRRYSPSIEATSKRGLTL--FETTPGLEACDAVLAAVAASAGATALVSA  118
             A  R  +    R   P +E   +  LT     T   L   DA++ +VAA AG   L+S 
Sbjct  61   EA--REALLGW-RDTFPVVETAPEVMLTAADLATDHHLSIWDAIILSVAAQAGCRLLLSE  117

Query  119  D  119
            D
Sbjct  118  D  118


>gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum 
SI]
 gi|146275224|dbj|BAF60973.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum 
SI]
Length=145

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 37/132 (29%), Positives = 51/132 (39%), Gaps = 22/132 (16%)

Query  1    MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60
            MI+ DT VLVYA   + P     R  V A+  + I +    +V+ EF  +    R     
Sbjct  1    MILTDTNVLVYAINTDAPQHTASRKFVEAVQQKNIDSVLPVQVLLEFYAIVTDHR-----  55

Query  61   AALGRVTMP----------NCSRRYSPSIEATSKRGLTLFE---TTPGLEACDAVLAAVA  107
                RVT P          N  R   P I+   K    L E    T G +  DA L A  
Sbjct  56   ----RVTRPLEPETAWKQVNALRAIFPVIDGGLKSFDLLKEISLKTKGADIFDAYLVAQM  111

Query  108  ASAGATALVSAD  119
             + G + L + +
Sbjct  112  KACGVSLLCTYN  123


>gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167453|gb|EEG76268.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
Length=140

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 30/140 (22%), Positives = 58/140 (42%), Gaps = 14/140 (10%)

Query  2    IVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQE--FVHVRARRRDRSD  59
            + +DT + +YA   EH  +  C +++ ++A   + A T  EV QE  + +    +RD   
Sbjct  3    VFIDTNIPMYAASKEHHFKASCVEILRSVAAGHLNAFTDTEVFQEIMYRYFSINQRD---  59

Query  60   AAALGRVTMPNCSRRYSPSIEATSKRGLTLFE------TTPGLEACDAVLAAVAASAGAT  113
                G     + S+    S+ A   + + L        T   L   D +  AV  +    
Sbjct  60   ---FGLRVFDSFSKIMDGSVLAIEHQDMLLARKLISNPTYSALSPRDTIHLAVMLNHRIK  116

Query  114  ALVSADPAFADLSDVVHVIP  133
             +++AD  F ++  +  + P
Sbjct  117  RIITADRGFENIHGIQVIYP  136


>gi|220934529|ref|YP_002513428.1| peptidase S49 [Thioalkalivibrio sulfidophilus HL-EbGr7]
 gi|219995839|gb|ACL72441.1| peptidase S49 [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length=311

 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 33/93 (36%), Positives = 43/93 (47%), Gaps = 7/93 (7%)

Query  50   VRARRRDRSDAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAAS  109
            +R   RD++  A + RV  P  S   S  I    +R       TP      AV++ V AS
Sbjct  87   LRQAFRDKNTVAVMLRVNSPGGSPVQSAYINNELRRLKAEHPDTP----VYAVISDVGAS  142

Query  110  AGATALVSADPAFADLSDVVHVIP---DAAGMV  139
             G  A+VSAD  +AD S VV  I    D  G+V
Sbjct  143  GGYYAVVSADYIYADASSVVGSIGVRMDGFGLV  175


>gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfobacterium sp.]
Length=150

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 27/55 (50%), Gaps = 5/55 (9%)

Query  1   MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADER-----IAATTTAEVIQEFVHV  50
           M  +DT ++VYA     P     +  V  + +ER     +A    A+V+ EFVHV
Sbjct  1   MFAIDTNLIVYAHNIASPFHKRAKQFVERVMNERNAEGQLAVCLPAQVLMEFVHV  55


>gi|158336541|ref|YP_001517715.1| hypothetical protein AM1_3405 [Acaryochloris marina MBIC11017]
 gi|158306782|gb|ABW28399.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length=140

 Score = 35.0 bits (79),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 35/124 (29%), Positives = 56/124 (46%), Gaps = 15/124 (12%)

Query  2    IVLDTTVLVYAKGAEHPL-RDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA  60
            ++LDT +++       P   D C+ L  AIADE++A   TA  I +  ++  R+    + 
Sbjct  3    VLLDTNIILDFFLERKPFFEDVCK-LFDAIADEQVAGFVTASSITDIFYICRRQTQSLEE  61

Query  61   AALGRVT----MPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALV  116
            A    +T    +  C   YS  +E   K GL  FE        DAV  A A +    A++
Sbjct  62   AKQLLITTLSLLEICPVDYSI-LEIALKSGLADFE--------DAVQIACAEAQNLDAII  112

Query  117  SADP  120
            + +P
Sbjct  113  TRNP  116


>gi|77556075|gb|ABA98871.1| retrotransposon protein, putative, unclassified [Oryza sativa 
Japonica Group]
Length=668

 Score = 34.3 bits (77),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 32/123 (27%), Positives = 51/123 (42%), Gaps = 19/123 (15%)

Query  5    DTTVLVYAKGAEHPLRD------PCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRS  58
            D  V +Y KGA    RD      P  D++  +AD ++A +   +V++E           S
Sbjct  235  DIPVPLYEKGAAE--RDEAINALPLTDIIGPLADHQVATSLKVKVVKE----------AS  282

Query  59   DAAALGRVTMPNCSRRYSPSIE-ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVS  117
            DAA      +P   R++S  +E   S+ G  L E    L      L  +A   G  + + 
Sbjct  283  DAATTSGGNVPTKPRKFSSGLEDRMSELGNNLSEIRGSLRVTYTGLHQLAGECGVKSTIP  342

Query  118  ADP  120
             +P
Sbjct  343  VNP  345


>gi|334346465|ref|YP_004555017.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium chlorophenolicum 
L-1]
 gi|334103087|gb|AEG50511.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium chlorophenolicum 
L-1]
Length=593

 Score = 33.9 bits (76),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 21/66 (32%), Positives = 31/66 (47%), Gaps = 0/66 (0%)

Query  20   RDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSI  79
            R+ C  LV A+ DER   T     I++    +AR+R    AAAL  +T  +  R +   +
Sbjct  391  REWCEMLVRAVVDERGMPTGLVSTIRDMSRHKARQRALQQAAALDSLTGADTRRAFLEKL  450

Query  80   EATSKR  85
            E    R
Sbjct  451  EEEMSR  456


>gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosis CPHL_A]
 gi|289420410|gb|EFD17611.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=131

 Score = 33.9 bits (76),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 39/126 (31%), Positives = 62/126 (50%), Gaps = 9/126 (7%)

Query  1    MIVLDTTVLVYAKGAEHPLR-DPCRDLVAAIAD-ERIAATTTAEVIQEFVH--VRARRRD  56
            MI++D+ + +Y  GA HP + D  R L +A++  ER+   T AEV+QE  H  V  +RR+
Sbjct  1    MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERL--VTDAEVLQEICHRYVAIKRRE  58

Query  57   RSDAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALV  116
                A    + + +       +    ++  L  ++T   L A DA+  AV A    T L+
Sbjct  59   AIQPAFDATIGVVDEVLPIERTDVEHARDALLRYQT---LSARDALHIAVMAHHDITRLM  115

Query  117  SADPAF  122
            S D  F
Sbjct  116  SFDRGF  121


>gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531 [Mycobacterium canettii CIPT 
140010059]
 gi|340005036|emb|CCC44185.1| conserved hypothetical [Mycobacterium canettii CIPT 140010059]
Length=131

 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 39/126 (31%), Positives = 62/126 (50%), Gaps = 9/126 (7%)

Query  1    MIVLDTTVLVYAKGAEHPLR-DPCRDLVAAIAD-ERIAATTTAEVIQEFVH--VRARRRD  56
            MI++D+ + +Y  GA HP + D  R L +A++  ER+   T AEV+QE  H  V  +RR+
Sbjct  1    MILVDSNIPMYLVGAPHPHKLDAQRLLESALSGGERL--VTDAEVLQEICHRYVAIKRRE  58

Query  57   RSDAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALV  116
                A    + + +       +    ++  L  ++T   L A DA+  AV A    T L+
Sbjct  59   AIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQT---LSARDALHIAVMAHHDITQLM  115

Query  117  SADPAF  122
            S D  F
Sbjct  116  SFDRGF  121



Lambda     K      H
   0.320    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128154014136




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40