BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0661c
Length=145
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607801|ref|NP_215175.1| hypothetical protein Rv0661c [Mycob... 285 2e-75
gi|167967493|ref|ZP_02549770.1| hypothetical protein MtubH3_0543... 279 9e-74
gi|333989224|ref|YP_004521838.1| hypothetical protein JDM601_058... 171 3e-41
gi|258593755|emb|CBE70096.1| conserved protein of unknown functi... 57.0 1e-06
gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 ... 51.6 4e-05
gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736... 51.2 5e-05
gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851... 50.1 1e-04
gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycoba... 48.1 5e-04
gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [K... 45.4 0.003
gi|337278769|ref|YP_004618240.1| hypothetical protein Rta_11360 ... 40.0 0.100
gi|85713897|ref|ZP_01044886.1| hypothetical protein NB311A_07073... 38.9 0.27
gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [P... 37.0 1.1
gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Det... 36.2 1.6
gi|220934529|ref|YP_002513428.1| peptidase S49 [Thioalkalivibrio... 35.8 2.1
gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfo... 35.8 2.4
gi|158336541|ref|YP_001517715.1| hypothetical protein AM1_3405 [... 35.0 4.0
gi|77556075|gb|ABA98871.1| retrotransposon protein, putative, un... 34.3 5.5
gi|334346465|ref|YP_004555017.1| diguanylate cyclase with PAS/PA... 33.9 8.2
gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosi... 33.9 9.2
gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531... 33.5 9.9
>gi|15607801|ref|NP_215175.1| hypothetical protein Rv0661c [Mycobacterium tuberculosis H37Rv]
gi|15840064|ref|NP_335101.1| hypothetical protein MT0690 [Mycobacterium tuberculosis CDC1551]
gi|31791845|ref|NP_854338.1| hypothetical protein Mb0680c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=145
Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA
Sbjct 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
Query 61 AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP 120
AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP
Sbjct 61 AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP 120
Query 121 AFADLSDVVHVIPDAAGMVSLLGDR 145
AFADLSDVVHVIPDAAGMVSLLGDR
Sbjct 121 AFADLSDVVHVIPDAAGMVSLLGDR 145
>gi|167967493|ref|ZP_02549770.1| hypothetical protein MtubH3_05437 [Mycobacterium tuberculosis
H37Ra]
gi|254549621|ref|ZP_05140068.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|339293694|gb|AEJ45805.1| hypothetical protein CCDC5079_0615 [Mycobacterium tuberculosis
CCDC5079]
gi|339297334|gb|AEJ49444.1| hypothetical protein CCDC5180_0607 [Mycobacterium tuberculosis
CCDC5180]
Length=143
Score = 279 bits (714), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 3 VLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAA 62
+LDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAA
Sbjct 1 MLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAA 60
Query 63 LGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAF 122
LGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAF
Sbjct 61 LGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAF 120
Query 123 ADLSDVVHVIPDAAGMVSLLGDR 145
ADLSDVVHVIPDAAGMVSLLGDR
Sbjct 121 ADLSDVVHVIPDAAGMVSLLGDR 143
>gi|333989224|ref|YP_004521838.1| hypothetical protein JDM601_0584 [Mycobacterium sp. JDM601]
gi|333485192|gb|AEF34584.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/148 (63%), Positives = 112/148 (76%), Gaps = 8/148 (5%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
MIVLDTTVLVYAKGA+H R+PCRDL+AA+A +RI ATTT EVIQEFVH+RARRR R+DA
Sbjct 1 MIVLDTTVLVYAKGADHRFREPCRDLIAAVAADRIEATTTPEVIQEFVHIRARRRGRNDA 60
Query 61 AALGRVTMPNCSRRYSPSIEATS---KRGLTLFETTPGLEACDAVLAAVAASAGATALVS 117
A LGR + + +P + +RGLT+FETTP + A D+VLAAVA SAGA LVS
Sbjct 61 ATLGR----SYAELLAPLLTVAGDHLERGLTMFETTPSVGAVDSVLAAVAKSAGAV-LVS 115
Query 118 ADPAFADLSDVVHVIPDAAGMVSLLGDR 145
AD AF+DL D+ HV+PD AG+ LLGD
Sbjct 116 ADGAFSDLPDITHVVPDTAGVAGLLGDN 143
>gi|258593755|emb|CBE70096.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=143
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/134 (29%), Positives = 62/134 (47%), Gaps = 1/134 (0%)
Query 4 LDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAAL 63
LDT + +YA G EHP++ PC ++ +A + + A T AEV+QE ++ + L
Sbjct 5 LDTNIFMYAAGREHPMKGPCVAILRRVALDELEALTNAEVLQEILYRYRAIEEGERGLHL 64
Query 64 GRVTMPNCSRRYSPSIEATSKRGLTLFETTPGL-EACDAVLAAVAASAGATALVSADPAF 122
R+ + P A +R L + + DAV AA A + G ++S D F
Sbjct 65 ARLAVDQVGGEILPVTLADMQRAFDLVARYRAMITSRDAVHAATALNHGLKHIISVDSHF 124
Query 123 ADLSDVVHVIPDAA 136
+ ++ V P A
Sbjct 125 DVIEGIIRVDPRKA 138
>gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
gi|289595943|ref|YP_003482639.1| PilT protein domain protein [Aciduliprofundum boonei T469]
gi|197622986|gb|EDY35553.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
gi|289533730|gb|ADD08077.1| PilT protein domain protein [Aciduliprofundum boonei T469]
Length=141
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/128 (26%), Positives = 58/128 (46%), Gaps = 2/128 (1%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
MI +DT++ +YA G EHP ++P L+ IA I A EV+QE H + +
Sbjct 1 MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG 60
Query 61 AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP 120
L + + R YS I + + R + + E + + DA+ A + + + D
Sbjct 61 IQLAKNIISLVPRIYSIEI-SDAIRAMDILERY-DITSRDAIHMAFMLNRNIKEVCTYDR 118
Query 121 AFADLSDV 128
F + ++
Sbjct 119 HFFRIEEI 126
>gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
gi|197622885|gb|EDY35453.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
Length=141
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/128 (26%), Positives = 58/128 (46%), Gaps = 2/128 (1%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
MI +DT++ +YA G EHP ++P L+ IA I A EV+QE H + +
Sbjct 1 MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG 60
Query 61 AALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADP 120
L + + R YS I + + R + + E + + DA+ A + + + D
Sbjct 61 IQLAKNIISLVPRIYSIEI-SDAIRAMDILERY-DITSRDAIHIAFMLNRNIKEVCTYDR 118
Query 121 AFADLSDV 128
F + ++
Sbjct 119 HFFRIEEI 126
>gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851 [Mycobacterium canettii CIPT
140010059]
gi|340006046|emb|CCC45216.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=126
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (32%), Positives = 56/125 (45%), Gaps = 6/125 (4%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV--HVRARRRDRS 58
MI +DT V +YA G +HPLR P R+ + + + T+AEV+QE + +V R
Sbjct 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEVMQELLNAYVPVGRNSTL 60
Query 59 DAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSA 118
D+A +T+ P A TL PGL A D + A G T + +
Sbjct 61 DSA----LTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTF 116
Query 119 DPAFA 123
D A
Sbjct 117 DHTLA 121
>gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycobacterium tuberculosis H37Rv]
gi|15842406|ref|NP_337443.1| hypothetical protein MT2932 [Mycobacterium tuberculosis CDC1551]
gi|31794040|ref|NP_856533.1| hypothetical protein Mb2888 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=126
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/125 (31%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV--HVRARRRDRS 58
MI +DT V +YA G +HPLR P R+ + + + T+AE +QE + +V R
Sbjct 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
Query 59 DAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSA 118
D+A +T+ P A TL PGL A D + A G T + +
Sbjct 61 DSA----LTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTF 116
Query 119 DPAFA 123
D A
Sbjct 117 DHTLA 121
>gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
gi|256687502|gb|ACV05304.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus
sedentarius DSM 20547]
Length=137
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/121 (33%), Positives = 61/121 (51%), Gaps = 3/121 (2%)
Query 2 IVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAA 61
+ +D+T+L++A G +H +R P R + A A +A + E QEF+ R R+ A
Sbjct 4 VFIDSTILLHAAGGDHAMRAPSRRWLEAAASGGMALHASVEAGQEFLFHRLRKSTPEQAT 63
Query 62 ALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPA 121
A + + + + P E +R + L T L DA+ AA A +AG T +VSAD
Sbjct 64 A--QFGLIDGLITWHPFDEEVLRRSVAL-AATGALGGRDAMHAATALAAGFTEIVSADRD 120
Query 122 F 122
F
Sbjct 121 F 121
>gi|337278769|ref|YP_004618240.1| hypothetical protein Rta_11360 [Ramlibacter tataouinensis TTB310]
gi|334729845|gb|AEG92221.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=153
Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/127 (28%), Positives = 53/127 (42%), Gaps = 1/127 (0%)
Query 2 IVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAA 61
+ DT + +Y GA C +L+ A A +RI T + E + + D A
Sbjct 17 VYFDTNIFIYVLGASQRYAALCLELLQACARQRILGCTGDVTLAELLVKPLQANDAQAVA 76
Query 62 ALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPA 121
A+ + + + S +R L GL+ A+ A A AGAT LVS D
Sbjct 77 AVRELLVEDGSIALHSHSRKAFERAAAL-RARHGLKMVHALQLATALEAGATCLVSNDRQ 135
Query 122 FADLSDV 128
F L+D+
Sbjct 136 FPSLADI 142
>gi|85713897|ref|ZP_01044886.1| hypothetical protein NB311A_07073 [Nitrobacter sp. Nb-311A]
gi|85699023|gb|EAQ36891.1| hypothetical protein NB311A_07073 [Nitrobacter sp. Nb-311A]
Length=151
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/121 (34%), Positives = 56/121 (47%), Gaps = 8/121 (6%)
Query 2 IVLDTTVLVYAKGAEH-PLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
+ LDT +L YA+G RD +LV + E AA +V+ E +V R+ RS A
Sbjct 3 VALDTNILAYAEGVNGVEKRDIVLELVRNLPQE--AAIVPVQVLGELFNVLTRKAGRSRA 60
Query 61 AALGRVTMPNCSRRYSPSIEATSKRGLTL--FETTPGLEACDAVLAAVAASAGATALVSA 118
A R + R P +E + LT T L DA++ +VAA AG L+S
Sbjct 61 EA--REALLGW-RDTFPVVETAPEVMLTAADLATDHHLSIWDAIILSVAAQAGCRLLLSE 117
Query 119 D 119
D
Sbjct 118 D 118
>gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146275224|dbj|BAF60973.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=145
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/132 (29%), Positives = 51/132 (39%), Gaps = 22/132 (16%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
MI+ DT VLVYA + P R V A+ + I + +V+ EF + R
Sbjct 1 MILTDTNVLVYAINTDAPQHTASRKFVEAVQQKNIDSVLPVQVLLEFYAIVTDHR----- 55
Query 61 AALGRVTMP----------NCSRRYSPSIEATSKRGLTLFE---TTPGLEACDAVLAAVA 107
RVT P N R P I+ K L E T G + DA L A
Sbjct 56 ----RVTRPLEPETAWKQVNALRAIFPVIDGGLKSFDLLKEISLKTKGADIFDAYLVAQM 111
Query 108 ASAGATALVSAD 119
+ G + L + +
Sbjct 112 KACGVSLLCTYN 123
>gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167453|gb|EEG76268.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
Length=140
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/140 (22%), Positives = 58/140 (42%), Gaps = 14/140 (10%)
Query 2 IVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQE--FVHVRARRRDRSD 59
+ +DT + +YA EH + C +++ ++A + A T EV QE + + +RD
Sbjct 3 VFIDTNIPMYAASKEHHFKASCVEILRSVAAGHLNAFTDTEVFQEIMYRYFSINQRD--- 59
Query 60 AAALGRVTMPNCSRRYSPSIEATSKRGLTLFE------TTPGLEACDAVLAAVAASAGAT 113
G + S+ S+ A + + L T L D + AV +
Sbjct 60 ---FGLRVFDSFSKIMDGSVLAIEHQDMLLARKLISNPTYSALSPRDTIHLAVMLNHRIK 116
Query 114 ALVSADPAFADLSDVVHVIP 133
+++AD F ++ + + P
Sbjct 117 RIITADRGFENIHGIQVIYP 136
>gi|220934529|ref|YP_002513428.1| peptidase S49 [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995839|gb|ACL72441.1| peptidase S49 [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length=311
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/93 (36%), Positives = 43/93 (47%), Gaps = 7/93 (7%)
Query 50 VRARRRDRSDAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAAS 109
+R RD++ A + RV P S S I +R TP AV++ V AS
Sbjct 87 LRQAFRDKNTVAVMLRVNSPGGSPVQSAYINNELRRLKAEHPDTP----VYAVISDVGAS 142
Query 110 AGATALVSADPAFADLSDVVHVIP---DAAGMV 139
G A+VSAD +AD S VV I D G+V
Sbjct 143 GGYYAVVSADYIYADASSVVGSIGVRMDGFGLV 175
>gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfobacterium sp.]
Length=150
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (33%), Positives = 27/55 (50%), Gaps = 5/55 (9%)
Query 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADER-----IAATTTAEVIQEFVHV 50
M +DT ++VYA P + V + +ER +A A+V+ EFVHV
Sbjct 1 MFAIDTNLIVYAHNIASPFHKRAKQFVERVMNERNAEGQLAVCLPAQVLMEFVHV 55
>gi|158336541|ref|YP_001517715.1| hypothetical protein AM1_3405 [Acaryochloris marina MBIC11017]
gi|158306782|gb|ABW28399.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length=140
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/124 (29%), Positives = 56/124 (46%), Gaps = 15/124 (12%)
Query 2 IVLDTTVLVYAKGAEHPL-RDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDA 60
++LDT +++ P D C+ L AIADE++A TA I + ++ R+ +
Sbjct 3 VLLDTNIILDFFLERKPFFEDVCK-LFDAIADEQVAGFVTASSITDIFYICRRQTQSLEE 61
Query 61 AALGRVT----MPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALV 116
A +T + C YS +E K GL FE DAV A A + A++
Sbjct 62 AKQLLITTLSLLEICPVDYSI-LEIALKSGLADFE--------DAVQIACAEAQNLDAII 112
Query 117 SADP 120
+ +P
Sbjct 113 TRNP 116
>gi|77556075|gb|ABA98871.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length=668
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/123 (27%), Positives = 51/123 (42%), Gaps = 19/123 (15%)
Query 5 DTTVLVYAKGAEHPLRD------PCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRS 58
D V +Y KGA RD P D++ +AD ++A + +V++E S
Sbjct 235 DIPVPLYEKGAAE--RDEAINALPLTDIIGPLADHQVATSLKVKVVKE----------AS 282
Query 59 DAAALGRVTMPNCSRRYSPSIE-ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVS 117
DAA +P R++S +E S+ G L E L L +A G + +
Sbjct 283 DAATTSGGNVPTKPRKFSSGLEDRMSELGNNLSEIRGSLRVTYTGLHQLAGECGVKSTIP 342
Query 118 ADP 120
+P
Sbjct 343 VNP 345
>gi|334346465|ref|YP_004555017.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium chlorophenolicum
L-1]
gi|334103087|gb|AEG50511.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium chlorophenolicum
L-1]
Length=593
Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/66 (32%), Positives = 31/66 (47%), Gaps = 0/66 (0%)
Query 20 RDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSI 79
R+ C LV A+ DER T I++ +AR+R AAAL +T + R + +
Sbjct 391 REWCEMLVRAVVDERGMPTGLVSTIRDMSRHKARQRALQQAAALDSLTGADTRRAFLEKL 450
Query 80 EATSKR 85
E R
Sbjct 451 EEEMSR 456
>gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosis CPHL_A]
gi|289420410|gb|EFD17611.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=131
Score = 33.9 bits (76), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/126 (31%), Positives = 62/126 (50%), Gaps = 9/126 (7%)
Query 1 MIVLDTTVLVYAKGAEHPLR-DPCRDLVAAIAD-ERIAATTTAEVIQEFVH--VRARRRD 56
MI++D+ + +Y GA HP + D R L +A++ ER+ T AEV+QE H V +RR+
Sbjct 1 MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERL--VTDAEVLQEICHRYVAIKRRE 58
Query 57 RSDAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALV 116
A + + + + ++ L ++T L A DA+ AV A T L+
Sbjct 59 AIQPAFDATIGVVDEVLPIERTDVEHARDALLRYQT---LSARDALHIAVMAHHDITRLM 115
Query 117 SADPAF 122
S D F
Sbjct 116 SFDRGF 121
>gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531 [Mycobacterium canettii CIPT
140010059]
gi|340005036|emb|CCC44185.1| conserved hypothetical [Mycobacterium canettii CIPT 140010059]
Length=131
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/126 (31%), Positives = 62/126 (50%), Gaps = 9/126 (7%)
Query 1 MIVLDTTVLVYAKGAEHPLR-DPCRDLVAAIAD-ERIAATTTAEVIQEFVH--VRARRRD 56
MI++D+ + +Y GA HP + D R L +A++ ER+ T AEV+QE H V +RR+
Sbjct 1 MILVDSNIPMYLVGAPHPHKLDAQRLLESALSGGERL--VTDAEVLQEICHRYVAIKRRE 58
Query 57 RSDAAALGRVTMPNCSRRYSPSIEATSKRGLTLFETTPGLEACDAVLAAVAASAGATALV 116
A + + + + ++ L ++T L A DA+ AV A T L+
Sbjct 59 AIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQT---LSARDALHIAVMAHHDITQLM 115
Query 117 SADPAF 122
S D F
Sbjct 116 SFDRGF 121
Lambda K H
0.320 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128154014136
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40