BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0662c

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840065|ref|NP_335102.1|  CopG family DNA-binding protein [My...   163    8e-39
gi|15607802|ref|NP_215176.1|  hypothetical protein Rv0662c [Mycob...   163    9e-39
gi|308231610|ref|ZP_07413109.2|  antitoxin [Mycobacterium tubercu...   161    3e-38
gi|340625680|ref|YP_004744132.1|  hypothetical protein MCAN_06611...   161    3e-38
gi|167967492|ref|ZP_02549769.1|  hypothetical protein MtubH3_0543...   157    5e-37
gi|333989223|ref|YP_004521837.1|  CopG family transcriptional reg...   117    7e-25
gi|269929124|ref|YP_003321445.1|  hypothetical protein Sthe_3223 ...  47.8    5e-04
gi|258593756|emb|CBE70097.1|  protein of unknown function [NC10 b...  41.2    0.053
gi|256824110|ref|YP_003148070.1|  hypothetical protein Ksed_02200...  38.9    0.27 
gi|169830612|ref|YP_001716594.1|  CopG/DNA-binding domain-contain...  37.0    1.1  
gi|344174770|emb|CCA86581.1|  conserved hypothetical protein, WD-...  35.8    2.0  
gi|302882309|ref|XP_003040065.1|  hypothetical protein NECHADRAFT...  35.8    2.3  
gi|284047181|ref|YP_003397521.1|  hypothetical protein Cwoe_5745 ...  35.4    3.0  
gi|225874393|ref|YP_002755852.1|  hypothetical protein ACP_2836 [...  35.0    3.7  
gi|37521109|ref|NP_924486.1|  hypothetical protein gsl1540 [Gloeo...  34.3    7.0  
gi|290954992|ref|YP_003486174.1|  MerR family transcriptional reg...  34.3    7.2  


>gi|15840065|ref|NP_335102.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|254230991|ref|ZP_04924318.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|13880212|gb|AAK44916.1| DNA-binding protein, CopG family [Mycobacterium tuberculosis 
CDC1551]
 gi|124600050|gb|EAY59060.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=126

 Score =  163 bits (413),  Expect = 8e-39, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  1    MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  60
            MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD
Sbjct  43   MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  102

Query  61   AADMSVPEPRELKQELEALRARRG  84
            AADMSVPEPRELKQELEALRARRG
Sbjct  103  AADMSVPEPRELKQELEALRARRG  126


>gi|15607802|ref|NP_215176.1| hypothetical protein Rv0662c [Mycobacterium tuberculosis H37Rv]
 gi|31791846|ref|NP_854339.1| hypothetical protein Mb0681c [Mycobacterium bovis AF2122/97]
 gi|121636583|ref|YP_976806.1| hypothetical protein BCG_0711c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 45 more sequence titles
 
gi|148660436|ref|YP_001281959.1| hypothetical protein MRA_0672 [Mycobacterium tuberculosis H37Ra]
 gi|148821866|ref|YP_001286620.1| hypothetical protein TBFG_10675 [Mycobacterium tuberculosis F11]
 gi|224989055|ref|YP_002643742.1| hypothetical protein JTY_0681 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253797602|ref|YP_003030603.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|254363612|ref|ZP_04979658.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289442059|ref|ZP_06431803.1| antitoxin [Mycobacterium tuberculosis T46]
 gi|289446219|ref|ZP_06435963.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289552916|ref|ZP_06442126.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289568601|ref|ZP_06448828.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289573266|ref|ZP_06453493.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289744385|ref|ZP_06503763.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749165|ref|ZP_06508543.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289752709|ref|ZP_06512087.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289756749|ref|ZP_06516127.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289760786|ref|ZP_06520164.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294992939|ref|ZP_06798630.1| CopG family DNA-binding protein [Mycobacterium tuberculosis 210]
 gi|297633160|ref|ZP_06950940.1| CopG family DNA-binding protein [Mycobacterium tuberculosis KZN 
4207]
 gi|297730140|ref|ZP_06959258.1| CopG family DNA-binding protein [Mycobacterium tuberculosis KZN 
R506]
 gi|298524154|ref|ZP_07011563.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|313657467|ref|ZP_07814347.1| CopG family DNA-binding protein [Mycobacterium tuberculosis KZN 
V2475]
 gi|339630732|ref|YP_004722374.1| hypothetical protein MAF_06710 [Mycobacterium africanum GM041182]
 gi|2143299|emb|CAB09384.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31617433|emb|CAD93543.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492230|emb|CAL70697.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134149126|gb|EBA41171.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504588|gb|ABQ72397.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148720393|gb|ABR05018.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224772168|dbj|BAH24974.1| hypothetical protein JTY_0681 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253319105|gb|ACT23708.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289414978|gb|EFD12218.1| antitoxin [Mycobacterium tuberculosis T46]
 gi|289419177|gb|EFD16378.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289437548|gb|EFD20041.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289537697|gb|EFD42275.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289542355|gb|EFD46003.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289684913|gb|EFD52401.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289689752|gb|EFD57181.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289693296|gb|EFD60725.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708292|gb|EFD72308.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289712313|gb|EFD76325.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298493948|gb|EFI29242.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326905118|gb|EGE52051.1| antitoxin [Mycobacterium tuberculosis W-148]
 gi|328457384|gb|AEB02807.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339330088|emb|CCC25743.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341600599|emb|CCC63269.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218487|gb|AEM99117.1| hypothetical protein MTCTRI2_0678 [Mycobacterium tuberculosis 
CTRI-2]
Length=122

 Score =  163 bits (412),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  1    MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  60
            MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD
Sbjct  39   MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  98

Query  61   AADMSVPEPRELKQELEALRARRG  84
            AADMSVPEPRELKQELEALRARRG
Sbjct  99   AADMSVPEPRELKQELEALRARRG  122


>gi|308231610|ref|ZP_07413109.2| antitoxin [Mycobacterium tuberculosis SUMu001]
 gi|308369986|ref|ZP_07419832.2| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|308370470|ref|ZP_07421634.2| antitoxin [Mycobacterium tuberculosis SUMu003]
 19 more sequence titles
 
gi|308371728|ref|ZP_07426003.2| antitoxin [Mycobacterium tuberculosis SUMu004]
 gi|308374069|ref|ZP_07434717.2| antitoxin [Mycobacterium tuberculosis SUMu006]
 gi|308375222|ref|ZP_07443152.2| antitoxin [Mycobacterium tuberculosis SUMu007]
 gi|308376466|ref|ZP_07438942.2| antitoxin [Mycobacterium tuberculosis SUMu008]
 gi|308378692|ref|ZP_07483536.2| antitoxin [Mycobacterium tuberculosis SUMu010]
 gi|308379836|ref|ZP_07487773.2| antitoxin [Mycobacterium tuberculosis SUMu011]
 gi|308396367|ref|ZP_07492279.2| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|332321919|sp|O06777.4|VAPB7_MYCTU RecName: Full=Putative antitoxin VapB7
 gi|308216665|gb|EFO76064.1| antitoxin [Mycobacterium tuberculosis SUMu001]
 gi|308325791|gb|EFP14642.1| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|308331809|gb|EFP20660.1| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|308335592|gb|EFP24443.1| antitoxin [Mycobacterium tuberculosis SUMu004]
 gi|308343078|gb|EFP31929.1| antitoxin [Mycobacterium tuberculosis SUMu006]
 gi|308346961|gb|EFP35812.1| antitoxin [Mycobacterium tuberculosis SUMu007]
 gi|308350939|gb|EFP39790.1| antitoxin [Mycobacterium tuberculosis SUMu008]
 gi|308359496|gb|EFP48347.1| antitoxin [Mycobacterium tuberculosis SUMu010]
 gi|308363400|gb|EFP52251.1| antitoxin [Mycobacterium tuberculosis SUMu011]
 gi|308367126|gb|EFP55977.1| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|323720885|gb|EGB29951.1| antitoxin [Mycobacterium tuberculosis CDC1551A]
Length=84

 Score =  161 bits (408),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  1   MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  60
           MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD
Sbjct  1   MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  60

Query  61  AADMSVPEPRELKQELEALRARRG  84
           AADMSVPEPRELKQELEALRARRG
Sbjct  61  AADMSVPEPRELKQELEALRARRG  84


>gi|340625680|ref|YP_004744132.1| hypothetical protein MCAN_06611 [Mycobacterium canettii CIPT 
140010059]
 gi|340003870|emb|CCC43001.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=122

 Score =  161 bits (407),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 83/84 (99%), Positives = 83/84 (99%), Gaps = 0/84 (0%)

Query  1    MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  60
            MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD
Sbjct  39   MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLD  98

Query  61   AADMSVPEPRELKQELEALRARRG  84
            AADM VPEPRELKQELEALRARRG
Sbjct  99   AADMPVPEPRELKQELEALRARRG  122


>gi|167967492|ref|ZP_02549769.1| hypothetical protein MtubH3_05432 [Mycobacterium tuberculosis 
H37Ra]
 gi|254549622|ref|ZP_05140069.1| CopG family DNA-binding protein [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|308373543|ref|ZP_07432749.2| antitoxin [Mycobacterium tuberculosis SUMu005]
 gi|308377485|ref|ZP_07479344.2| antitoxin [Mycobacterium tuberculosis SUMu009]
 gi|308337212|gb|EFP26063.1| antitoxin [Mycobacterium tuberculosis SUMu005]
 gi|308355535|gb|EFP44386.1| antitoxin [Mycobacterium tuberculosis SUMu009]
Length=82

 Score =  157 bits (397),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  3   MRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAA  62
           MRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAA
Sbjct  1   MRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAA  60

Query  63  DMSVPEPRELKQELEALRARRG  84
           DMSVPEPRELKQELEALRARRG
Sbjct  61  DMSVPEPRELKQELEALRARRG  82


>gi|333989223|ref|YP_004521837.1| CopG family transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333485191|gb|AEF34583.1| CopG family DNA-binding protein [Mycobacterium sp. JDM601]
Length=80

 Score =  117 bits (292),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 61/80 (77%), Positives = 67/80 (84%), Gaps = 0/80 (0%)

Query  5   LAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAADM  64
           + HRLQILLDDE HRR+TA ARERGV VA+VVREAIDRGL  P  RRKSAG+RLLDA DM
Sbjct  1   MEHRLQILLDDERHRRLTAAARERGVSVASVVREAIDRGLAGPVDRRKSAGQRLLDAPDM  60

Query  65  SVPEPRELKQELEALRARRG  84
            VP+P ELKQEL+ LR RRG
Sbjct  61  PVPDPAELKQELDELRGRRG  80


>gi|269929124|ref|YP_003321445.1| hypothetical protein Sthe_3223 [Sphaerobacter thermophilus DSM 
20745]
 gi|269788481|gb|ACZ40623.1| hypothetical protein Sthe_3223 [Sphaerobacter thermophilus DSM 
20745]
Length=106

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 33/77 (43%), Positives = 51/77 (67%), Gaps = 2/77 (2%)

Query  5   LAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAADM  64
           L HR+Q+LLDDE + ++   AR RG+ +  V+REAIDR L + +  R++A   +L A  M
Sbjct  8   LDHRVQVLLDDERYEKVAREARRRGISIGAVIREAIDR-LPTDSEARRAAIEAILAAEPM  66

Query  65  SVP-EPRELKQELEALR  80
            VP +P +L++EL+  R
Sbjct  67  PVPDDPADLRRELDTAR  83


>gi|258593756|emb|CBE70097.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
Length=95

 Score = 41.2 bits (95),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 28/76 (37%), Positives = 47/76 (62%), Gaps = 5/76 (6%)

Query  5   LAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDA-AD  63
           L  ++QILL DE HR +  + + RG P++ ++REA+   L+  A  R++A R+  +  A 
Sbjct  4   LTQKVQILLTDEQHRALLKLVKARGKPLSVLLREAVVDKLLIEA--RQAAKRKAFEEIAA  61

Query  64  MSVP--EPRELKQELE  77
           MS+P  E  E++ E+E
Sbjct  62  MSLPVAEWPEMEDEIE  77


>gi|256824110|ref|YP_003148070.1| hypothetical protein Ksed_02200 [Kytococcus sedentarius DSM 20547]
 gi|256687503|gb|ACV05305.1| hypothetical protein Ksed_02200 [Kytococcus sedentarius DSM 20547]
Length=88

 Score = 38.9 bits (89),  Expect = 0.27, Method: Compositional matrix adjust.
 Identities = 32/73 (44%), Positives = 39/73 (54%), Gaps = 11/73 (15%)

Query  9   LQILLDDECHRRITAV---ARERGVPVATVVREAIDRGLV-SPAGRRKSAGRRLL----D  60
           +Q+LLD+   RRIT +   A ERGV V+TVVR+AID         RR  A R  L    D
Sbjct  1   MQLLLDE---RRITLLRERATERGVSVSTVVRDAIDASFEDDDMARRAQAARDFLALTAD  57

Query  61  AADMSVPEPRELK  73
            A     EP +LK
Sbjct  58  NARHEAAEPADLK  70


>gi|169830612|ref|YP_001716594.1| CopG/DNA-binding domain-containing protein [Candidatus Desulforudis 
audaxviator MP104C]
 gi|169637456|gb|ACA58962.1| CopG domain protein DNA-binding domain protein [Candidatus Desulforudis 
audaxviator MP104C]
Length=89

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 28/79 (36%), Positives = 41/79 (52%), Gaps = 9/79 (11%)

Query  8   RLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAG-RRKSAGRRLLDAA----  62
           R Q+ L +E  RRI  +A +RGV +A ++REA+D    S A   R+   RR + AA    
Sbjct  10  RTQVQLTEEQVRRIQQLAADRGVSMAQLIREAVDLYTCSNAALSREEQVRRAIAAAGRFR  69

Query  63  ----DMSVPEPRELKQELE  77
               D+SV   + L +  E
Sbjct  70  SGLQDLSVEHDKYLAEAFE  88


>gi|344174770|emb|CCA86581.1| conserved hypothetical protein, WD-40 repeat-containing protein 
[Ralstonia syzygii R24]
Length=1214

 Score = 35.8 bits (81),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 23/70 (33%), Positives = 41/70 (59%), Gaps = 7/70 (10%)

Query  5    LAHRLQILLDDECHRRIT-AVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAAD  63
            L ++ +  L D C + ++ A A+    P A+ +R+ ID+ L++P+G R  A   ++D AD
Sbjct  281  LNYKPETALLDYCDKALSEATAKP---PRASALRDWIDQRLLTPSGLRAPA---MIDPAD  334

Query  64   MSVPEPRELK  73
             + P P+EL 
Sbjct  335  GNCPTPQELS  344


>gi|302882309|ref|XP_003040065.1| hypothetical protein NECHADRAFT_105463 [Nectria haematococca 
mpVI 77-13-4]
 gi|256720932|gb|EEU34352.1| hypothetical protein NECHADRAFT_105463 [Nectria haematococca 
mpVI 77-13-4]
Length=543

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 18/54 (34%), Positives = 28/54 (52%), Gaps = 4/54 (7%)

Query  18   HRRITAVAR----ERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAADMSVP  67
            H+R+T + R    + G P+   V E +   LV PAG  +   + L D AD ++P
Sbjct  68   HKRVTHLVRFLVNQHGYPLDAFVYECMMDALVDPAGSSRGVEKLLDDMADQNIP  121


>gi|284047181|ref|YP_003397521.1| hypothetical protein Cwoe_5745 [Conexibacter woesei DSM 14684]
 gi|283951402|gb|ADB54146.1| hypothetical protein Cwoe_5745 [Conexibacter woesei DSM 14684]
Length=107

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 20/37 (55%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  5   LAHRLQILLDDECHRRITAVARERGVPVATVVREAID  41
           L  RLQIL+     +R+   ARERGV V ++VREAID
Sbjct  19  LNERLQILVTPLQRQRLEREARERGVSVGSLVREAID  55


>gi|225874393|ref|YP_002755852.1| hypothetical protein ACP_2836 [Acidobacterium capsulatum ATCC 
51196]
 gi|225793202|gb|ACO33292.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 
51196]
Length=74

 Score = 35.0 bits (79),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 21/71 (30%), Positives = 35/71 (50%), Gaps = 0/71 (0%)

Query  8   RLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAADMSVP  67
           R  + LDD+    + + A  R +P+   V E + R +V PA  R+  G  + D    S P
Sbjct  2   RTTLALDDDVFEEVRSYAEARDLPLGRAVTELLRRAMVQPAPTRRVNGLLVFDLPADSSP  61

Query  68  EPRELKQELEA  78
              E+ ++LE+
Sbjct  62  VTDEMVRDLES  72


>gi|37521109|ref|NP_924486.1| hypothetical protein gsl1540 [Gloeobacter violaceus PCC 7421]
 gi|35212105|dbj|BAC89481.1| gsl1540 [Gloeobacter violaceus PCC 7421]
Length=99

 Score = 34.3 bits (77),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 15/34 (45%), Positives = 25/34 (74%), Gaps = 0/34 (0%)

Query  7   HRLQILLDDECHRRITAVARERGVPVATVVREAI  40
           +R QILL+ E HR++  +ARE+G  ++ V+RE +
Sbjct  4   YRAQILLEPEQHRQLAEIAREQGRTLSEVMREIV  37


>gi|290954992|ref|YP_003486174.1| MerR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260644518|emb|CBG67603.1| putative MerR-family transcriptional regulator [Streptomyces 
scabiei 87.22]
Length=540

 Score = 34.3 bits (77),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (64%), Gaps = 1/38 (2%)

Query  21  ITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRL  58
           I AVAR+ G+PV  V+R   DRG+V+P GR     RR 
Sbjct  22  IGAVARQVGLPV-KVIRHWSDRGVVAPVGRTAGGYRRY  58



Lambda     K      H
   0.323    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131923386480




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40