BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0664
Length=90
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607804|ref|NP_215178.1| hypothetical protein Rv0664 [Mycoba... 175 2e-42
gi|340625682|ref|YP_004744134.1| hypothetical protein MCAN_06631... 173 8e-42
gi|150864085|ref|XP_001382781.2| filamentous growth, cell polari... 35.0 3.3
>gi|15607804|ref|NP_215178.1| hypothetical protein Rv0664 [Mycobacterium tuberculosis H37Rv]
gi|31791848|ref|NP_854341.1| hypothetical protein Mb0683 [Mycobacterium bovis AF2122/97]
gi|121636585|ref|YP_976808.1| hypothetical protein BCG_0713 [Mycobacterium bovis BCG str. Pasteur
1173P2]
56 more sequence titles
Length=90
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 1 MEKSRCHAVAHGGGCAGSAKSHKSGGRCGQGRGAGDSHGTRGAGRRYRAASAPHPLAVGA 60
MEKSRCHAVAHGGGCAGSAKSHKSGGRCGQGRGAGDSHGTRGAGRRYRAASAPHPLAVGA
Sbjct 1 MEKSRCHAVAHGGGCAGSAKSHKSGGRCGQGRGAGDSHGTRGAGRRYRAASAPHPLAVGA 60
Query 61 HLRDELAKRSADPRLTDELNDLAGHTLDDL 90
HLRDELAKRSADPRLTDELNDLAGHTLDDL
Sbjct 61 HLRDELAKRSADPRLTDELNDLAGHTLDDL 90
>gi|340625682|ref|YP_004744134.1| hypothetical protein MCAN_06631 [Mycobacterium canettii CIPT
140010059]
gi|340003872|emb|CCC43003.1| hypothetical protein MCAN_06631 [Mycobacterium canettii CIPT
140010059]
Length=90
Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/90 (99%), Positives = 89/90 (99%), Gaps = 0/90 (0%)
Query 1 MEKSRCHAVAHGGGCAGSAKSHKSGGRCGQGRGAGDSHGTRGAGRRYRAASAPHPLAVGA 60
MEKSRCHAVAHGGGCAGSAKSHKSGGRCGQGRGAGDSHGT GAGRRYRAASAPHPLAVGA
Sbjct 1 MEKSRCHAVAHGGGCAGSAKSHKSGGRCGQGRGAGDSHGTWGAGRRYRAASAPHPLAVGA 60
Query 61 HLRDELAKRSADPRLTDELNDLAGHTLDDL 90
HLRDELAKRSADPRLTDELNDLAGHTLDDL
Sbjct 61 HLRDELAKRSADPRLTDELNDLAGHTLDDL 90
>gi|150864085|ref|XP_001382781.2| filamentous growth, cell polarity and elongation [Scheffersomyces
stipitis CBS 6054]
gi|149385341|gb|ABN64752.2| filamentous growth, cell polarity and elongation [Scheffersomyces
stipitis CBS 6054]
Length=457
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 23/71 (33%), Positives = 32/71 (46%), Gaps = 5/71 (7%)
Query 14 GCAGSAKSHKSGGRCGQGRGAGDSHGTRGAGRRYRAASAPHPLAVGAHLRDELAKRSADP 73
G A S G CG +G+ G G G + A + L V +E KRSADP
Sbjct 350 GAAASCSGGADGITCGMNWASGNWDGIYGLGEQTSALEVMNALIV-----EEPLKRSADP 404
Query 74 RLTDELNDLAG 84
+ D+++ AG
Sbjct 405 EVADKIDYNAG 415
Lambda K H
0.315 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129182109240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40