BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0665

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607805|ref|NP_215179.1|  hypothetical protein Rv0665 [Mycoba...   211    3e-53
gi|340625683|ref|YP_004744135.1|  hypothetical protein MCAN_06641...   201    2e-50
gi|288917699|ref|ZP_06412062.1|  PilT protein domain protein [Fra...  58.9    3e-07
gi|336179974|ref|YP_004585349.1|  PilT protein domain-containing ...  57.0    1e-06
gi|194320087|pdb|3DBO|B  Chain B, Crystal Structure Of A Member O...  56.6    1e-06
gi|15607767|ref|NP_215141.1|  hypothetical protein Rv0627 [Mycoba...  56.6    1e-06
gi|340625625|ref|YP_004744077.1|  hypothetical protein MCAN_06011...  55.8    2e-06
gi|15607735|ref|NP_215109.1|  hypothetical protein Rv0595c [Mycob...  55.8    2e-06
gi|289756674|ref|ZP_06516052.1|  conserved hypothetical protein [...  55.8    2e-06
gi|15839998|ref|NP_335035.1|  hypothetical protein MT0625 [Mycoba...  55.8    2e-06
gi|256372766|ref|YP_003110590.1|  hypothetical protein Afer_2016 ...  55.5    2e-06
gi|86742786|ref|YP_483186.1|  PilT protein-like protein [Frankia ...  55.1    3e-06
gi|158312409|ref|YP_001504917.1|  PilT domain-containing protein ...  55.1    4e-06
gi|284046267|ref|YP_003396607.1|  PilT protein domain protein [Co...  54.3    6e-06
gi|41408125|ref|NP_960961.1|  hypothetical protein MAP2027c [Myco...  54.3    6e-06
gi|254820582|ref|ZP_05225583.1|  hypothetical protein MintA_11676...  53.1    1e-05
gi|254774872|ref|ZP_05216388.1|  hypothetical protein MaviaA2_093...  50.1    1e-04
gi|145595623|ref|YP_001159920.1|  PilT domain-containing protein ...  49.3    2e-04
gi|240169379|ref|ZP_04748038.1|  hypothetical protein MkanA1_0870...  46.2    0.002
gi|86738864|ref|YP_479264.1|  PilT protein-like protein [Frankia ...  44.7    0.005
gi|288916357|ref|ZP_06410736.1|  PilT protein domain protein [Fra...  43.5    0.009
gi|240171945|ref|ZP_04750604.1|  PilT protein-like [Mycobacterium...  43.5    0.011
gi|297159809|gb|ADI09521.1|  PilT-like protein [Streptomyces bing...  41.2    0.045
gi|337768282|emb|CCB76995.1|  PilT protein-like [Streptomyces cat...  40.0    0.12 
gi|289749125|ref|ZP_06508503.1|  conserved hypothetical protein [...  39.7    0.14 
gi|145226167|ref|YP_001136821.1|  PilT domain-containing protein ...  37.7    0.53 
gi|333989901|ref|YP_004522515.1|  PilT protein-like protein [Myco...  37.7    0.59 
gi|37521951|ref|NP_925328.1|  plasmid stability protein StbB-like...  36.2    1.5  
gi|284045166|ref|YP_003395506.1|  PilT protein domain protein [Co...  35.4    2.9  
gi|37522180|ref|NP_925557.1|  leucyl aminopeptidase [Gloeobacter ...  35.4    3.1  
gi|300711554|ref|YP_003737368.1|  phenylalanyl-tRNA synthetase su...  33.9    7.7  
gi|152968335|ref|YP_001364119.1|  PilT protein domain-containing ...  33.5    9.4  


>gi|15607805|ref|NP_215179.1| hypothetical protein Rv0665 [Mycobacterium tuberculosis H37Rv]
 gi|15840068|ref|NP_335105.1| hypothetical protein MT0693 [Mycobacterium tuberculosis CDC1551]
 gi|31791849|ref|NP_854342.1| hypothetical protein Mb0684 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=112

 Score =  211 bits (537),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 111/112 (99%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  1    VTEGEVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRAD  60
            +TEGEVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRAD
Sbjct  1    MTEGEVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRAD  60

Query  61   TLALARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAEIKV  112
            TLALARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAEIKV
Sbjct  61   TLALARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAEIKV  112


>gi|340625683|ref|YP_004744135.1| hypothetical protein MCAN_06641 [Mycobacterium canettii CIPT 
140010059]
 gi|340003873|emb|CCC43004.1| putative uncharacterized protein mb0684 [Mycobacterium canettii 
CIPT 140010059]
Length=137

 Score =  201 bits (512),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 106/108 (99%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    VTEGEVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRAD  60
            +TEGEVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLG+LNAGDSATRSRRAD
Sbjct  1    MTEGEVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGVLNAGDSATRSRRAD  60

Query  61   TLALARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            TLALARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA
Sbjct  61   TLALARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108


>gi|288917699|ref|ZP_06412062.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288350914|gb|EFC85128.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=127

 Score = 58.9 bits (141),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 42/102 (42%), Positives = 58/102 (57%), Gaps = 5/102 (4%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTL-ALART  67
            G+LDTSV +A +    +A +P  +A+SV++I EL  G+L A  S TR+ R   L AL R 
Sbjct  4    GILDTSVLVATD----VAPIPGELAISVISIAELHFGVLVAKTSETRANRLARLSALQRR  59

Query  68   ADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAE  109
             D +P+ +AV  S  RL A     G +   +  D LIAATA 
Sbjct  60   FDPLPLDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAH  101


>gi|336179974|ref|YP_004585349.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334860954|gb|AEH11428.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=127

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 42/102 (42%), Positives = 57/102 (56%), Gaps = 5/102 (4%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTL-ALART  67
            G+LDTSV +A +    +A +P  +A+SV++I ELQ G+L A     R+ R   L AL R 
Sbjct  4    GILDTSVLVATD----VAPIPGELAVSVISIAELQFGVLVARTPEARANRLARLSALQRR  59

Query  68   ADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAE  109
             D +PV +AV  S  RL A     G +   +  D LIAATA 
Sbjct  60   FDPLPVDDAVADSYGRLAARVVEIGRQPRARTMDLLIAATAH  101


>gi|194320087|pdb|3DBO|B Chain B, Crystal Structure Of A Member Of The Vapbc Family Of 
Toxin- Antitoxin Systems, Vapbc-5, From Mycobacterium Tuberculosis
Length=150

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 40/102 (40%), Positives = 60/102 (59%), Gaps = 4/102 (3%)

Query  9    GLLDTSVFIARESGGAIAD--LPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALAR  66
            G+LDTSVFIA ESG  + +  +P+RVA +V+T+ EL++G+L A  +  R++R  TL    
Sbjct  23   GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  82

Query  67   TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
              + +PV +      ARL      +G  R V++ D  IAA A
Sbjct  83   DMETLPVDDDAARMWARLRIHLAESG--RRVRINDLWIAAVA  122


>gi|15607767|ref|NP_215141.1| hypothetical protein Rv0627 [Mycobacterium tuberculosis H37Rv]
 gi|31791809|ref|NP_854302.1| hypothetical protein Mb0643 [Mycobacterium bovis AF2122/97]
 gi|121636546|ref|YP_976769.1| hypothetical protein BCG_0673 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 74 more sequence titles
 Length=135

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 40/102 (40%), Positives = 60/102 (59%), Gaps = 4/102 (3%)

Query  9    GLLDTSVFIARESGGAIAD--LPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALAR  66
            G+LDTSVFIA ESG  + +  +P+RVA +V+T+ EL++G+L A  +  R++R  TL    
Sbjct  8    GVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA  67

Query  67   TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
              + +PV +      ARL      +G  R V++ D  IAA A
Sbjct  68   DMETLPVDDDAARMWARLRIHLAESG--RRVRINDLWIAAVA  107


>gi|340625625|ref|YP_004744077.1| hypothetical protein MCAN_06011 [Mycobacterium canettii CIPT 
140010059]
 gi|340003815|emb|CCC42941.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=130

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 44/104 (43%), Positives = 60/104 (58%), Gaps = 10/104 (9%)

Query  10   LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGLLNAGDSATRSRRADTLAL  64
            L DTSVFI  E   A    P+R A     +SV+T+GEL+LG+L A      +RR  T  L
Sbjct  7    LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63

Query  65   ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            A+  + + + EAV  + A LV+  RAA +R  V + D+ IAATA
Sbjct  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATA  105


>gi|15607735|ref|NP_215109.1| hypothetical protein Rv0595c [Mycobacterium tuberculosis H37Rv]
 gi|31791777|ref|NP_854270.1| hypothetical protein Mb0611c [Mycobacterium bovis AF2122/97]
 gi|121636513|ref|YP_976736.1| hypothetical protein BCG_0641c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 47 more sequence titles
 Length=130

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 44/104 (43%), Positives = 60/104 (58%), Gaps = 10/104 (9%)

Query  10   LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGLLNAGDSATRSRRADTLAL  64
            L DTSVFI  E   A    P+R A     +SV+T+GEL+LG+L A      +RR  T  L
Sbjct  7    LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63

Query  65   ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            A+  + + + EAV  + A LV+  RAA +R  V + D+ IAATA
Sbjct  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATA  105


>gi|289756674|ref|ZP_06516052.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289712238|gb|EFD76250.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=130

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 44/104 (43%), Positives = 60/104 (58%), Gaps = 10/104 (9%)

Query  10   LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGLLNAGDSATRSRRADTLAL  64
            L DTSVFI  E   A    P+R A     +SV+T+GEL+LG+L A      +RR  T  L
Sbjct  7    LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  63

Query  65   ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            A+  + + + EAV  + A LV+  RAA +R  V + D+ IAATA
Sbjct  64   AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATA  105


>gi|15839998|ref|NP_335035.1| hypothetical protein MT0625 [Mycobacterium tuberculosis CDC1551]
 gi|167969018|ref|ZP_02551295.1| hypothetical protein MtubH3_13717 [Mycobacterium tuberculosis 
H37Ra]
 gi|254230934|ref|ZP_04924261.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 27 more sequence titles
 Length=131

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 44/104 (43%), Positives = 60/104 (58%), Gaps = 10/104 (9%)

Query  10   LLDTSVFIARESGGAIADLPERVA-----LSVMTIGELQLGLLNAGDSATRSRRADTLAL  64
            L DTSVFI  E   A    P+R A     +SV+T+GEL+LG+L A      +RR  T  L
Sbjct  8    LADTSVFIGIE---ATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQL  64

Query  65   ARTADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            A+  + + + EAV  + A LV+  RAA +R  V + D+ IAATA
Sbjct  65   AQRFEPLGIDEAVSEAWALLVSKLRAAKLR--VPINDSWIAATA  106


>gi|256372766|ref|YP_003110590.1| hypothetical protein Afer_2016 [Acidimicrobium ferrooxidans DSM 
10331]
 gi|256009350|gb|ACU54917.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=112

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 43/105 (41%), Positives = 59/105 (57%), Gaps = 6/105 (5%)

Query  10   LLDTSVFIARESG---GAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALAR  66
            LLDTS F+A ESG   GA+  + +   +SV+T+ EL LG+L A D    +R A   A+  
Sbjct  4    LLDTSFFVATESGRPLGAMEGVTD-TEVSVVTVAELTLGVLMANDDDRPARVATLSAVES  62

Query  67   TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAEIK  111
            T D +PV   V    AR+ A   A   RR V + D L+AATA ++
Sbjct  63   TWDPLPVDAEVARQFARVAAVLHAE--RRRVPILDVLVAATAMVE  105


>gi|86742786|ref|YP_483186.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86569648|gb|ABD13457.1| PilT protein-like [Frankia sp. CcI3]
Length=127

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 41/102 (41%), Positives = 56/102 (55%), Gaps = 5/102 (4%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTL-ALART  67
            G+LDTSV +A +    +  LP  +A+SV++I ELQ G+L A     R+ R   L A+ R 
Sbjct  4    GVLDTSVLVATD----VTPLPGELAVSVISIAELQFGILVARTPQARATRLARLSAIQRR  59

Query  68   ADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAE  109
             D +PV +AV  S  RL A     G +   +  D LIAATA 
Sbjct  60   FDPLPVDDAVADSYGRLAARVVEVGRQPRARTMDLLIAATAH  101


>gi|158312409|ref|YP_001504917.1| PilT domain-containing protein [Frankia sp. EAN1pec]
 gi|158107814|gb|ABW10011.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=127

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 39/102 (39%), Positives = 57/102 (56%), Gaps = 5/102 (4%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLA-LART  67
            G+LDTSV +A +    +  +P  +A+SV++I ELQ G+L A     R+ R   L+ + R 
Sbjct  4    GVLDTSVLVATD----VTPIPGELAVSVISIAELQFGILVAKTPQARATRLARLSTIQRR  59

Query  68   ADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAE  109
             D +P+ +AV  S  RL A    AG +   +  D LIAATA 
Sbjct  60   FDPLPIDDAVADSYGRLAARVVEAGRQPRARTMDLLIAATAH  101


>gi|284046267|ref|YP_003396607.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283950488|gb|ADB53232.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=127

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 46/99 (47%), Positives = 65/99 (66%), Gaps = 1/99 (1%)

Query  10   LLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALARTAD  69
            L DTSVF+A+ESG  + +LP+R+A+SV+T  EL+LG+L A D+ATR+RR +TLA  R+A 
Sbjct  5    LADTSVFVAQESGRTLGELPDRIAVSVVTAAELELGVLRARDAATRARRLNTLARVRSAY  64

Query  70   QIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
             +   +A   S    +AD    G  R ++  D  IAATA
Sbjct  65   PLLPIDAETASCFAGIAD-EELGQGRRLRRHDVWIAATA  102


>gi|41408125|ref|NP_960961.1| hypothetical protein MAP2027c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396480|gb|AAS04344.1| hypothetical protein MAP_2027c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336461800|gb|EGO40658.1| putative nucleic acid-binding protein, contains PIN domain [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=135

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 41/102 (41%), Positives = 57/102 (56%), Gaps = 4/102 (3%)

Query  9    GLLDTSVFIARESGGAI--ADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALAR  66
            G+LDTSVFIA ESG  +  A +P+ VA +V+T+ EL  G+L A  S  R++R  TL    
Sbjct  8    GVLDTSVFIASESGRQLDEARIPDEVATTVVTLAELHAGVLAATTSNVRAQRLATLESIA  67

Query  67   TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
              + +PV +  +   ARL      AG  R ++  D  IAA A
Sbjct  68   DMEMLPVDDDAVRMWARLRIHLAEAG--RRMRANDLWIAAIA  107


>gi|254820582|ref|ZP_05225583.1| hypothetical protein MintA_11676 [Mycobacterium intracellulare 
ATCC 13950]
Length=135

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 40/102 (40%), Positives = 57/102 (56%), Gaps = 4/102 (3%)

Query  9    GLLDTSVFIARESGGAI--ADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALAR  66
            G+LDTSVFIA ESG  +  A +P++V  +V+T+ EL +G+L A  S  R++R  TL    
Sbjct  8    GVLDTSVFIATESGRPLDAALIPDQVGTTVVTLAELHVGVLAASTSDIRAQRLATLESIA  67

Query  67   TADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
              + +PV +      ARL       G R  V++ D  IAA A
Sbjct  68   DIEALPVDDDAARMWARLRIHLAETGQR--VRINDLWIAAIA  107


>gi|254774872|ref|ZP_05216388.1| hypothetical protein MaviaA2_09395 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=127

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 39/101 (39%), Positives = 54/101 (54%), Gaps = 4/101 (3%)

Query  10   LLDTSVFIARESGGAI--ADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALART  67
            +LDTSVFIA ESG  +  A +P+ VA +V+T+ EL  G+L A  S  R++R  TL     
Sbjct  1    MLDTSVFIASESGRHLDEARIPDEVATTVITLAELHAGVLAATTSDVRAQRLATLESIAD  60

Query  68   ADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
             + +PV +      ARL      AG  R ++  D  IA  A
Sbjct  61   MEMLPVDDDAARMWARLRIHLAEAG--RRMRANDLWIAGIA  99


>gi|145595623|ref|YP_001159920.1| PilT domain-containing protein [Salinispora tropica CNB-440]
 gi|145304960|gb|ABP55542.1| PilT protein domain protein [Salinispora tropica CNB-440]
Length=127

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 36/97 (38%), Positives = 54/97 (56%), Gaps = 5/97 (5%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTL-ALART  67
            G+LDTS+ IA +    +  +P  +A+SV ++ ELQ G+L A  +  R+ R   L A+ R 
Sbjct  4    GILDTSILIATD----VTPIPGELAISVTSLAELQFGVLAAKTADARAGRLARLSAIQRR  59

Query  68   ADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALI  104
             D +P+ EAV  S ARL A     G +   ++ D LI
Sbjct  60   FDPLPIDEAVADSYARLAARVVEIGRQPRARVMDLLI  96


>gi|240169379|ref|ZP_04748038.1| hypothetical protein MkanA1_08703 [Mycobacterium kansasii ATCC 
12478]
Length=126

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (58%), Gaps = 2/75 (2%)

Query  34   LSVMTIGELQLGLLNAGDSATRSRRADTLALARTADQIPVSEAVMISLARLVADCRAAGV  93
            L  +T+GEL+LG+L A      +RR  T  LA+  + + V E V  + A LV+  RAA +
Sbjct  29   LPKLTLGELRLGVLQAPGPEAAARRLSTYQLAQRFEPLSVDERVSEAWALLVSKLRAAHL  88

Query  94   RRSVKLTDALIAATA  108
            R  +   D+ IAATA
Sbjct  89   REPI--NDSWIAATA  101


>gi|86738864|ref|YP_479264.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86565726|gb|ABD09535.1| PilT protein-like [Frankia sp. CcI3]
Length=157

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 39/118 (34%), Positives = 55/118 (47%), Gaps = 11/118 (9%)

Query  1    VTEGEVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLN---------AGD  51
            +T   V  GLLDT++ I R     +A+LP+ +A+SV+T+ EL  G              +
Sbjct  3    MTSEPVRQGLLDTNILILRRWVN-VAELPDEMAISVVTLAELSAGPHQVRRNDEQDLYDE  61

Query  52   SATRSRRADTLALARTA-DQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
               R+RR + L  A    D IP          RL A   AAG +   +  D +IAATA
Sbjct  62   HEERARRMEILQRAENEFDPIPFDAEAARVYGRLTAAVVAAGRKPRRRTADLMIAATA  119


>gi|288916357|ref|ZP_06410736.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288352336|gb|EFC86534.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=155

 Score = 43.5 bits (101),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 38/110 (35%), Positives = 52/110 (48%), Gaps = 11/110 (10%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLN---------AGDSATRSRRA  59
            GLLDT++ I R      A+LP+ +A+S +T+ EL  G              +   R+RR 
Sbjct  9    GLLDTNILILRRWIDP-AELPDEMAISAVTLAELSAGPHQVRRNDDQDLYDEHEERARRM  67

Query  60   DTLALARTA-DQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            +TL  A    D IP          RL A   AAG R   ++ D +IAATA
Sbjct  68   ETLQRAENEFDPIPFDAEAARVYGRLSAAVVAAGRRPRRRVADLMIAATA  117


>gi|240171945|ref|ZP_04750604.1| PilT protein-like [Mycobacterium kansasii ATCC 12478]
Length=131

 Score = 43.5 bits (101),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 35/102 (35%), Positives = 49/102 (49%), Gaps = 1/102 (0%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALART-  67
            GLLDTSV I       +A LP+ +A+S +T+ EL  G L A      +RR   L    + 
Sbjct  4    GLLDTSVVIDWHDPAIVAALPDEMAISAITVAELAAGPLLATTPIEAARRQARLQEVESR  63

Query  68   ADQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAE  109
             + +P   A + S   +VA     G +   +  D LIAATA 
Sbjct  64   LEPLPFDGAAVRSYGLIVAAVVHEGRKPRSRFADMLIAATAH  105


>gi|297159809|gb|ADI09521.1| PilT-like protein [Streptomyces bingchenggensis BCW-1]
Length=152

 Score = 41.2 bits (95),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 36/114 (32%), Positives = 52/114 (46%), Gaps = 11/114 (9%)

Query  5    EVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLL---------NAGDSATR  55
            E   GLLDT++ I R+      +LP  VA+S +T+ EL  G           +  + A R
Sbjct  4    EYAQGLLDTNIMILRKWLNP-DELPAEVAISAITLAELSAGPHEVRRNEEQDDYDEHAER  62

Query  56   SRRADTLALARTA-DQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            +RR D L  A    D IP          R+ A   +AG +   ++ D +IAA A
Sbjct  63   ARRMDVLQRAENEFDPIPFDAEAARIYGRICAAVISAGRKPRRRIADLMIAAVA  116


>gi|337768282|emb|CCB76995.1| PilT protein-like [Streptomyces cattleya NRRL 8057]
Length=152

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 36/114 (32%), Positives = 53/114 (47%), Gaps = 11/114 (9%)

Query  5    EVGVGLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLL---------NAGDSATR  55
            E   GLLDT++ I R      A+LP  +A+S +T+ EL  G           +  + A R
Sbjct  4    EYERGLLDTNIMILRRWVDP-AELPAEMAISAITLAELSAGPHEVRRNEEQDDYDEYAER  62

Query  56   SRRADTLALARTA-DQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            +RR D L  A    D IP       +  R+ A   +AG +   ++ D +IAA A
Sbjct  63   ARRLDVLQRAENEFDPIPFDAEAARAYGRICAAVISAGGKPRRRVADLMIAAIA  116


>gi|289749125|ref|ZP_06508503.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689712|gb|EFD57141.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=108

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 28/81 (35%), Positives = 45/81 (56%), Gaps = 2/81 (2%)

Query  28   LPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALARTADQIPVSEAVMISLARLVAD  87
            +P+RVA +V+T+ EL++G+L A  +  R++R  TL      + +PV +      ARL   
Sbjct  2    IPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARMWARLRIH  61

Query  88   CRAAGVRRSVKLTDALIAATA  108
               +G  R V++ D  IAA A
Sbjct  62   LAESG--RRVRINDLWIAAVA  80


>gi|145226167|ref|YP_001136821.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218630|gb|ABP48033.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=126

 Score = 37.7 bits (86),  Expect = 0.53, Method: Compositional matrix adjust.
 Identities = 37/102 (37%), Positives = 56/102 (55%), Gaps = 5/102 (4%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALARTA  68
             +LDTSV IA +    +A +   +A+S +T+ EL  G+L A +S  R+ R   L L + +
Sbjct  3    AILDTSVVIAAD----VAPVEGELAVSAVTLAELHFGVLVAKESKVRAERLRRLLLLQRS  58

Query  69   -DQIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATAE  109
             D +P+ EAV  S  ++ A    AG +   +  D LIAATA 
Sbjct  59   FDALPLDEAVAASYGQIAAAVVDAGRQPRARSMDLLIAATAH  100


>gi|333989901|ref|YP_004522515.1| PilT protein-like protein [Mycobacterium sp. JDM601]
 gi|333485869|gb|AEF35261.1| PilT protein-like protein [Mycobacterium sp. JDM601]
Length=74

 Score = 37.7 bits (86),  Expect = 0.59, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  9   GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALARTA  68
           GLLDTSV I       +A LP+ VA+S +T  EL  G L A  +   +RR   L  A   
Sbjct  7   GLLDTSVVIDWHDPKVVAALPDEVAISAITAAELAAGPLLATSAVEAARRQARLDFAGLN  66

Query  69  DQI  71
           D I
Sbjct  67  DLI  69


>gi|37521951|ref|NP_925328.1| plasmid stability protein StbB-like protein [Gloeobacter violaceus 
PCC 7421]
 gi|35212950|dbj|BAC90323.1| glr2382 [Gloeobacter violaceus PCC 7421]
Length=149

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 34/91 (38%), Positives = 45/91 (50%), Gaps = 14/91 (15%)

Query  29   PERVALSVMTIGELQLGLLNAGDSATRSRRADTLA-------LARTADQI-PVSEAVMIS  80
            PE   LS +T+GEL  G+    +    S+R +TL        L   AD+I PV   V   
Sbjct  31   PEACYLSALTVGELGRGI----ERMPASKRKETLKAWLHGQLLVTYADRIWPVDTDVAHC  86

Query  81   LARLVADCRAAGVRRSVKLTDALIAATAEIK  111
             A L A   A G  R++ L D+LIAATA + 
Sbjct  87   WAELSAALEAVG--RTLPLFDSLIAATAVVH  115


>gi|284045166|ref|YP_003395506.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283949387|gb|ADB52131.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=139

 Score = 35.4 bits (80),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 34/102 (34%), Positives = 48/102 (48%), Gaps = 3/102 (2%)

Query  9    GLLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALARTA  68
            G+LDTS  I          LP    ++ +T+ EL +G L A D   R+ R   L  A  A
Sbjct  8    GVLDTSTVILLPRIVDPQTLPVEPLITAVTLAELSVGPLVASDERERAARQAHLQQAE-A  66

Query  69   D--QIPVSEAVMISLARLVADCRAAGVRRSVKLTDALIAATA  108
            D   +P   A   +  R+ A  R  G + + +  DA+IAATA
Sbjct  67   DFVPLPFDAAAARAFGRVAASLRRDGRKPAARSYDAMIAATA  108


>gi|37522180|ref|NP_925557.1| leucyl aminopeptidase [Gloeobacter violaceus PCC 7421]
 gi|56404565|sp|Q7NHC6.1|AMPA_GLOVI RecName: Full=Probable cytosol aminopeptidase; AltName: Full=Leucine 
aminopeptidase; Short=LAP; AltName: Full=Leucyl aminopeptidase
 gi|35213180|dbj|BAC90552.1| leucine aminopeptidase [Gloeobacter violaceus PCC 7421]
Length=504

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 29/95 (31%), Positives = 39/95 (42%), Gaps = 0/95 (0%)

Query  10   LLDTSVFIARESGGAIADLPERVALSVMTIGELQLGLLNAGDSATRSRRADTLALARTAD  69
            L D  VF  +    AI DL       V+ +G    GLL   +   R  RA   A      
Sbjct  363  LADALVFSEKLGVDAIVDLATLTGACVVALGNDIAGLLTENEELARQIRAAGEASGEKFW  422

Query  70   QIPVSEAVMISLARLVADCRAAGVRRSVKLTDALI  104
            Q+P+ E+    +  +VAD R  G R    +T AL 
Sbjct  423  QLPMEESYFEGMKSVVADMRNTGSREGGTITAALF  457


>gi|300711554|ref|YP_003737368.1| phenylalanyl-tRNA synthetase subunit alpha [Halalkalicoccus jeotgali 
B3]
 gi|299125237|gb|ADJ15576.1| phenylalanyl-tRNA synthetase subunit alpha [Halalkalicoccus jeotgali 
B3]
Length=499

 Score = 33.9 bits (76),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 28/71 (40%), Positives = 38/71 (54%), Gaps = 2/71 (2%)

Query  39   IGELQLGLLNAGDSATRSRRADTLALARTADQIPVSEAVMISLARLVADCRAAGVRRSVK  98
             GE+  G L+A  +A R   A+  ALA  A + P+++AV+  LAR     R     RSV 
Sbjct  120  YGEIDSGELSA--TAGREEDAEADALALIAAEEPITDAVLDDLARRDLVSRRESTVRSVT  177

Query  99   LTDALIAATAE  109
            LTDA + A  E
Sbjct  178  LTDAGVTALME  188


>gi|152968335|ref|YP_001364119.1| PilT protein domain-containing protein [Kineococcus radiotolerans 
SRS30216]
 gi|151362852|gb|ABS05855.1| PilT protein domain protein [Kineococcus radiotolerans SRS30216]
Length=125

 Score = 33.5 bits (75),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 29/78 (38%), Positives = 43/78 (56%), Gaps = 1/78 (1%)

Query  32   VALSVMTIGELQLGLLNAGDSATRSRRADTLALARTA-DQIPVSEAVMISLARLVADCRA  90
            VA+SV+T  EL  G+  A +   R+ R       R+A D +PV+ +V+ + A + A   A
Sbjct  21   VAVSVLTFAELLTGVHAAPEGPVRTVRRVRFERLRSAFDPLPVTASVLGAYADIDAAEVA  80

Query  91   AGVRRSVKLTDALIAATA  108
            AG +   +  D LIAATA
Sbjct  81   AGRKPRRRRVDLLIAATA  98



Lambda     K      H
   0.318    0.132    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128047486336




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40