BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0666

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607806|ref|NP_215180.1|  hypothetical protein Rv0666 [Mycoba...   110    5e-23
gi|340625684|ref|YP_004744136.1|  hypothetical protein MCAN_06651...  90.5    7e-17


>gi|15607806|ref|NP_215180.1| hypothetical protein Rv0666 [Mycobacterium tuberculosis H37Rv]
 gi|31791850|ref|NP_854343.1| hypothetical protein Mb0685 [Mycobacterium bovis AF2122/97]
 gi|121636587|ref|YP_976810.1| hypothetical protein BCG_0715 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 52 more sequence titles
 Length=57

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 56/57 (99%), Positives = 57/57 (100%), Gaps = 0/57 (0%)

Query  1   VTPRTDEGAAAPCLMPDVTMPVKRGDARGALGVGPALFVVSVSSSLVRARSCRCTAD  57
           +TPRTDEGAAAPCLMPDVTMPVKRGDARGALGVGPALFVVSVSSSLVRARSCRCTAD
Sbjct  1   MTPRTDEGAAAPCLMPDVTMPVKRGDARGALGVGPALFVVSVSSSLVRARSCRCTAD  57


>gi|340625684|ref|YP_004744136.1| hypothetical protein MCAN_06651 [Mycobacterium canettii CIPT 
140010059]
 gi|340003874|emb|CCC43005.1| putative membrane protein [Mycobacterium canettii CIPT 140010059]
Length=57

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 54/57 (95%), Positives = 56/57 (99%), Gaps = 0/57 (0%)

Query  1   VTPRTDEGAAAPCLMPDVTMPVKRGDARGALGVGPALFVVSVSSSLVRARSCRCTAD  57
           +TPRT+EGAAAPCLMPDVTMPVKR DARGALGVGPALFVVSVSSSLVRARSCRCTAD
Sbjct  1   MTPRTEEGAAAPCLMPDVTMPVKRDDARGALGVGPALFVVSVSSSLVRARSCRCTAD  57



Lambda     K      H
   0.321    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128599645896




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40