BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0667
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
gi|158513701|sp|A5U052.2|RPOB_MYCTA RecName: Full=DNA-directed R... 2394 0.0
gi|15607807|ref|NP_215181.1| DNA-directed RNA polymerase subunit... 2394 0.0
gi|15840070|ref|NP_335107.1| DNA-directed RNA polymerase subunit... 2394 0.0
gi|340625686|ref|YP_004744138.1| DNA-directed RNA polymerase sub... 2393 0.0
gi|148821872|ref|YP_001286626.1| DNA-directed RNA polymerase sub... 2392 0.0
gi|254549627|ref|ZP_05140074.1| DNA-directed RNA polymerase subu... 2391 0.0
gi|326905112|gb|EGE52045.1| DNA-directed RNA polymerase subunit ... 2390 0.0
gi|313657472|ref|ZP_07814352.1| DNA-directed RNA polymerase subu... 2390 0.0
gi|253797608|ref|YP_003030609.1| DNA-directed RNA polymerase sub... 2389 0.0
gi|289749170|ref|ZP_06508548.1| DNA-directed RNA polymerase subu... 2388 0.0
gi|289573272|ref|ZP_06453499.1| DNA-directed RNA polymerase subu... 2388 0.0
gi|289552922|ref|ZP_06442132.1| DNA-directed RNA polymerase subu... 2387 0.0
gi|339630737|ref|YP_004722379.1| DNA-directed RNA polymerase sub... 2386 0.0
gi|297730145|ref|ZP_06959263.1| DNA-directed RNA polymerase subu... 2385 0.0
gi|468334|gb|AAA21416.1| RNA polymerase beta-subunit [Mycobacter... 2345 0.0
gi|183981015|ref|YP_001849306.1| DNA-directed RNA polymerase, be... 2268 0.0
gi|118616532|ref|YP_904864.1| DNA-directed RNA polymerase subuni... 2264 0.0
gi|15828010|ref|NP_302273.1| DNA-directed RNA polymerase subunit... 2253 0.0
gi|240167668|ref|ZP_04746327.1| DNA-directed RNA polymerase subu... 2251 0.0
gi|190149256|gb|ABW91171.2| RNA polymerase beta subunit [Mycobac... 2249 0.0
gi|167967486|ref|ZP_02549763.1| DNA-directed RNA polymerase subu... 2238 0.0
gi|339297337|gb|AEJ49447.1| DNA-directed RNA polymerase subunit ... 2234 0.0
gi|253740489|gb|ACT34878.1| RNA polymerase sigma factor [Mycobac... 2231 0.0
gi|41410228|ref|NP_963064.1| DNA-directed RNA polymerase subunit... 2228 0.0
gi|88909143|sp|Q73SE4.2|RPOB_MYCPA RecName: Full=DNA-directed RN... 2228 0.0
gi|254776938|ref|ZP_05218454.1| DNA-directed RNA polymerase subu... 2223 0.0
gi|118465939|ref|YP_883637.1| DNA-directed RNA polymerase subuni... 2219 0.0
gi|254822773|ref|ZP_05227774.1| DNA-directed RNA polymerase subu... 2214 0.0
gi|296168513|ref|ZP_06850329.1| DNA-directed RNA polymerase subu... 2213 0.0
gi|62720654|gb|AAX93863.1| RNA polymerase subunit B [Mycobacteri... 2206 0.0
gi|581334|emb|CAA78668.1| RNA polymerase beta subunit [Mycobacte... 2205 0.0
gi|342858843|ref|ZP_08715497.1| DNA-directed RNA polymerase subu... 2205 0.0
gi|259559669|gb|ACW83033.1| DNA-directed RNA polymerase subunit ... 2205 0.0
gi|34391555|gb|AAN65355.1| RpoB [Mycobacterium mageritense] >gi|... 2204 0.0
gi|34595745|gb|AAQ76595.1| RpoB [Mycobacterium goodii] 2201 0.0
gi|116488418|gb|AAQ76602.2| RpoB [Mycobacterium wolinskyi] 2198 0.0
gi|34595743|gb|AAQ76594.1| RpoB [Mycobacterium smegmatis] 2194 0.0
gi|118468129|ref|YP_885753.1| DNA-directed RNA polymerase subuni... 2192 0.0
gi|62720652|gb|AAX93862.1| RNA polymerase subunit B [Mycobacteri... 2189 0.0
gi|34595749|gb|AAQ76597.1| RpoB [Mycobacterium senegalense] 2188 0.0
gi|34391553|gb|AAN65354.1| RpoB [Mycobacterium septicum] 2188 0.0
gi|158513166|sp|A1T4J2.2|RPOB_MYCVP RecName: Full=DNA-directed R... 2187 0.0
gi|120402269|ref|YP_952098.1| DNA-directed RNA polymerase subuni... 2187 0.0
gi|34595757|gb|AAQ76601.1| RpoB [Mycobacterium farcinogenes] 2187 0.0
gi|34391563|gb|AAN65359.1| RpoB [Mycobacterium fortuitum] 2187 0.0
gi|34595747|gb|AAQ76596.1| RpoB [Mycobacterium porcinum] 2186 0.0
gi|34391549|gb|AAN65352.1| RpoB [Mycobacterium fortuitum] 2185 0.0
gi|34391565|gb|AAN65360.1| RpoB [Mycobacterium fortuitum] 2185 0.0
gi|34391551|gb|AAN65353.1| RpoB [Mycobacterium peregrinum] 2184 0.0
gi|126433605|ref|YP_001069296.1| DNA-directed RNA polymerase sub... 2182 0.0
>gi|158513701|sp|A5U052.2|RPOB_MYCTA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
Length=1177
Score = 2394 bits (6204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1172/1172 (100%), Positives = 1172/1172 (100%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 6 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 65
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 66 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 125
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 126 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 185
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 186 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 245
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 246 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 305
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 306 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 365
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 366 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 425
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 426 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 485
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 486 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 545
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 546 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 605
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 606 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 665
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 666 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 725
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 726 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 785
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 786 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 845
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 846 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 905
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 906 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 965
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 966 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1025
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1026 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1085
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1086 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1145
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1146 LREGEDEDLERAAANLGINLSRNESASVEDLA 1177
>gi|15607807|ref|NP_215181.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
H37Rv]
gi|31791851|ref|NP_854344.1| DNA-directed RNA polymerase subunit beta [Mycobacterium bovis
AF2122/97]
gi|121636588|ref|YP_976811.1| DNA-directed RNA polymerase subunit beta [Mycobacterium bovis
BCG str. Pasteur 1173P2]
25 more sequence titles
Length=1172
Score = 2394 bits (6204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1171/1172 (99%), Positives = 1172/1172 (100%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|15840070|ref|NP_335107.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
CDC1551]
gi|254363617|ref|ZP_04979663.1| DNA-directed RNA polymerase (beta chain) rpoB [Mycobacterium
tuberculosis str. Haarlem]
gi|289744390|ref|ZP_06503768.1| DNA-directed RNA polymerase beta subunit rpoB [Mycobacterium
tuberculosis 02_1987]
32 more sequence titles
Length=1178
Score = 2394 bits (6204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1172/1172 (100%), Positives = 1172/1172 (100%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 67 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 667 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 847 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 907 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 966
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 967 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1026
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1027 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1146
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1147 LREGEDEDLERAAANLGINLSRNESASVEDLA 1178
>gi|340625686|ref|YP_004744138.1| DNA-directed RNA polymerase subunit beta RPOB [Mycobacterium
canettii CIPT 140010059]
gi|340003876|emb|CCC43007.1| DNA-directed RNA polymerase (beta chain) RPOB (transcriptase
beta chain) (RNA polymerase beta subunit) [Mycobacterium canettii
CIPT 140010059]
Length=1172
Score = 2393 bits (6202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1170/1172 (99%), Positives = 1172/1172 (100%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVAT+EYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATVEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|148821872|ref|YP_001286626.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
F11]
gi|148720399|gb|ABR05024.1| DNA-directed RNA polymerase beta subunit rpoB [Mycobacterium
tuberculosis F11]
Length=1178
Score = 2392 bits (6198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1171/1172 (99%), Positives = 1171/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 67 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRL ALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLLALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 667 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 847 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 907 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 966
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 967 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1026
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1027 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1146
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1147 LREGEDEDLERAAANLGINLSRNESASVEDLA 1178
>gi|254549627|ref|ZP_05140074.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=1172
Score = 2391 bits (6197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1170/1172 (99%), Positives = 1171/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFM QNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMVQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|326905112|gb|EGE52045.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis W-148]
Length=1172
Score = 2390 bits (6194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1170/1172 (99%), Positives = 1171/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRL ALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLLALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|313657472|ref|ZP_07814352.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
KZN V2475]
Length=1172
Score = 2390 bits (6194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1170/1172 (99%), Positives = 1171/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFM QNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMYQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|253797608|ref|YP_003030609.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis KZN 1435]
gi|253319111|gb|ACT23714.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis KZN 1435]
Length=1178
Score = 2389 bits (6192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1170/1172 (99%), Positives = 1171/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 67 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFM QNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMYQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGP+IGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 487 ETPEGPSIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 667 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 847 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 907 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 966
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 967 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1026
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1027 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1146
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1147 LREGEDEDLERAAANLGINLSRNESASVEDLA 1178
>gi|289749170|ref|ZP_06508548.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis T92]
gi|289689757|gb|EFD57186.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis T92]
Length=1172
Score = 2388 bits (6190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1169/1172 (99%), Positives = 1170/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQ EAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQGREAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|289573272|ref|ZP_06453499.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis K85]
gi|289537703|gb|EFD42281.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis K85]
Length=1172
Score = 2388 bits (6188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1169/1172 (99%), Positives = 1171/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGM RMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMLRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVA+ESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|289552922|ref|ZP_06442132.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis KZN 605]
gi|289437554|gb|EFD20047.1| DNA-directed RNA polymerase subunit beta rpoB [Mycobacterium
tuberculosis KZN 605]
Length=1177
Score = 2387 bits (6186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1169/1172 (99%), Positives = 1169/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 6 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 65
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 66 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 125
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 126 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 185
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 186 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 245
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 246 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 305
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 306 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 365
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 366 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 425
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFM QNNPLSGLTHKRRLSA GPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 426 IKEFFGTSQLSQFMGQNNPLSGLTHKRRLSAPGPGGLSRERAGLEVRDVHPSHYGRMCPI 485
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 486 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 545
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 546 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 605
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 606 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 665
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 666 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 725
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 726 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 785
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 786 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 845
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 846 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 905
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 906 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 965
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 966 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1025
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1026 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1085
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGEN PEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1086 ELLTIKSDDTVGRVKVYEAIVKGENTPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1145
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1146 LREGEDEDLERAAANLGINLSRNESASVEDLA 1177
>gi|339630737|ref|YP_004722379.1| DNA-directed RNA polymerase subunit beta [Mycobacterium africanum
GM041182]
gi|339330093|emb|CCC25748.1| DNA-directed RNA polymerase (beta chain) RPOB (transcriptase
beta chain) [Mycobacterium africanum GM041182]
Length=1172
Score = 2386 bits (6183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1168/1172 (99%), Positives = 1170/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTM VPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMIVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGM RMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMLRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVA+ESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|297730145|ref|ZP_06959263.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
KZN R506]
Length=1172
Score = 2385 bits (6182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1168/1172 (99%), Positives = 1169/1172 (99%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+ADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFM QNNPLSGLTHKRRLSA GPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 421 IKEFFGTSQLSQFMGQNNPLSGLTHKRRLSAPGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
Sbjct 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGEN PEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1081 ELLTIKSDDTVGRVKVYEAIVKGENTPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
>gi|468334|gb|AAA21416.1| RNA polymerase beta-subunit [Mycobacterium tuberculosis]
Length=1177
Score = 2345 bits (6077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1162/1172 (99%), Positives = 1164/1172 (99%), Gaps = 1/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
Sbjct 67 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDA ++ESGVIEEVSADYITVMHDNGT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAA-TSSSQESGVIEEVSADYITVMHDNGT 665
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
Sbjct 666 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 725
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
Sbjct 726 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 785
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 786 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 845
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 846 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 905
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
Sbjct 906 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 965
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
NAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
Sbjct 966 HANAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1025
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1026 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1085
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1086 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1145
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESAS EDLA
Sbjct 1146 LREGEDEDLERAAANLGINLSRNESASFEDLA 1177
>gi|183981015|ref|YP_001849306.1| DNA-directed RNA polymerase, beta subunit, RpoB [Mycobacterium
marinum M]
gi|226699424|sp|B2HSJ3.1|RPOB_MYCMM RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|183174341|gb|ACC39451.1| DNA-directed RNA polymerase, beta subunit, RpoB [Mycobacterium
marinum M]
Length=1176
Score = 2268 bits (5876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1112/1172 (95%), Positives = 1134/1172 (97%), Gaps = 2/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 64
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 65 SQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 124
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 125 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 184
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW++E
Sbjct 185 FDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSNE 244
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 245 QIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 304
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVEVPVE
Sbjct 305 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEVPVE 364
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 365 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 424
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 425 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 484
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANS
Sbjct 485 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQANS 544
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 545 PIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 604
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GT
Sbjct 605 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGT 664
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLLVAIMPW
Sbjct 665 RHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAIMPW 724
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 725 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 784
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 785 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 844
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF
Sbjct 845 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF 904
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP+ LL A
Sbjct 905 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENLLSA 964
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFPYPVTVG
Sbjct 965 QPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPVTVG 1024
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1025 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1084
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1085 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1144
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1145 LREGEDEDLERAAANLGINLSRNESASVEDLA 1176
>gi|118616532|ref|YP_904864.1| DNA-directed RNA polymerase subunit beta [Mycobacterium ulcerans
Agy99]
gi|158512376|sp|A0PM24.1|RPOB_MYCUA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|118568642|gb|ABL03393.1| DNA-directed RNA polymerase, beta subunit, RpoB [Mycobacterium
ulcerans Agy99]
Length=1176
Score = 2264 bits (5866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1111/1172 (95%), Positives = 1133/1172 (97%), Gaps = 2/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 64
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 65 SQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 124
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMG FPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 125 MTYAAPLFVTAEFINNNTGEIKSQTVFMGGFPMMTEKGTFIINGTERVVVSQLVRSPGVY 184
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW++E
Sbjct 185 FDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSNE 244
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 245 QIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 304
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVEVPVE
Sbjct 305 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEVPVE 364
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 365 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 424
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 425 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 484
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANS
Sbjct 485 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQANS 544
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 545 PIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 604
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GT
Sbjct 605 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGT 664
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLLVAIMPW
Sbjct 665 RHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAIMPW 724
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 725 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 784
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 785 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 844
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF
Sbjct 845 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF 904
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP+ LL A
Sbjct 905 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENLLSA 964
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFPYPVTVG
Sbjct 965 QPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPVTVG 1024
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1025 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1084
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1085 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1144
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1145 LREGEDEDLERAAANLGINLSRNESASVEDLA 1176
>gi|15828010|ref|NP_302273.1| DNA-directed RNA polymerase subunit beta [Mycobacterium leprae
TN]
gi|221230487|ref|YP_002503903.1| DNA-directed RNA polymerase subunit beta [Mycobacterium leprae
Br4923]
gi|13432231|sp|P30760.2|RPOB_MYCLE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|254765297|sp|B8ZSC7.1|RPOB_MYCLB RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|13093563|emb|CAC30845.1| [beta] subunit of RNA polymerase [Mycobacterium leprae]
gi|219933594|emb|CAR71987.1| [beta] subunit of RNA polymerase [Mycobacterium leprae Br4923]
Length=1178
Score = 2253 bits (5838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1113/1172 (95%), Positives = 1135/1172 (97%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
L D QSKT SPS SRPQSS NNSVPGAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ECKDKD
Sbjct 67 SPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITVM D+GT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPW
Sbjct 667 RRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF
Sbjct 847 VIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP+ELL A
Sbjct 907 LPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLHA 966
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFPYPVTVG
Sbjct 967 APNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVG 1026
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1027 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1146
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESAS+EDLA
Sbjct 1147 LREGEDEDLERAAANLGINLSRNESASIEDLA 1178
>gi|240167668|ref|ZP_04746327.1| DNA-directed RNA polymerase subunit beta [Mycobacterium kansasii
ATCC 12478]
Length=1173
Score = 2251 bits (5832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1109/1176 (95%), Positives = 1137/1176 (97%), Gaps = 7/1176 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
+AD RQSKT ASP+ SRPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 1 MADFRQSKTDASPAQSRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
Query 61 SPRWRESAAERGD----VNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDEC 116
S RWR+SA RG+ +NP+GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDEC
Sbjct 61 SQRWRDSAIARGEAAGGINPIGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120
Query 117 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 176
KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS
Sbjct 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180
Query 177 PGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 236
PGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG
Sbjct 181 PGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240
Query 237 WTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 296
WTSE+I ERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK
Sbjct 241 WTSERITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300
Query 297 EKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 356
EKRYDLARVGRYKVNKKLGL+ PIT++TLTEEDVVATIEYLVRLHEGQ TMTVPGGVE
Sbjct 301 EKRYDLARVGRYKVNKKLGLNTNHPITTTTLTEEDVVATIEYLVRLHEGQATMTVPGGVE 360
Query 357 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 416
VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP
Sbjct 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 420
Query 417 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 476
VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR
Sbjct 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480
Query 477 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVA 536
MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV+DG+V+DEI YLTADEEDRHVVA
Sbjct 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVIDGLVTDEIHYLTADEEDRHVVA 540
Query 537 QANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 596
QANSPIDA+GRFVEPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDDA
Sbjct 541 QANSPIDAEGRFVEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600
Query 597 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMH 656
NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAE+SGVIEEVSADYITVM
Sbjct 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITVMA 660
Query 657 DNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVA 716
D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLLVA
Sbjct 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720
Query 717 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLA 776
IMPWEGHNYEDAIILSNRLVEED+LTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLA
Sbjct 721 IMPWEGHNYEDAIILSNRLVEEDILTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780
Query 777 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 836
DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG
Sbjct 781 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 840
Query 837 ESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 896
ESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKIL E
Sbjct 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILAQE 900
Query 897 DMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDE 956
DMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGW++ G PDWAA LP+
Sbjct 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWQI---AGSPDWAANLPEA 957
Query 957 LLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYP 1016
L A+PN IVSTPVFDGAQEAELQGLLS TLPNRDGDVLVD DGKA+LFDGRSGEPFPYP
Sbjct 958 LRSAEPNQIVSTPVFDGAQEAELQGLLSSTLPNRDGDVLVDGDGKAVLFDGRSGEPFPYP 1017
Query 1017 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1076
VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA
Sbjct 1018 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1077
Query 1077 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1136
YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG
Sbjct 1078 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1137
Query 1137 AAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1172
AAIELREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1138 AAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1173
>gi|190149256|gb|ABW91171.2| RNA polymerase beta subunit [Mycobacterium lepromatosis]
Length=1178
Score = 2249 bits (5828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1108/1172 (95%), Positives = 1133/1172 (97%), Gaps = 0/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
L D QSKT SPS SRPQSS NNSVPGAPNR+SFAKL EPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LPDFAQSKTGVSPSQSRPQSSPNNSVPGAPNRISFAKLHEPLEVPGLLDVQTDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SP WR +A RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 67 SPLWRAAATSRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVV+SQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVISQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTV GGVE+PVE
Sbjct 307 DLARVGRYKVNKKLGLHAGEQITSSTLTEEDVVATIEYLVRLHEGQSTMTVLGGVELPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID DG F+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDKDGCFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAG VV+AE+SGVIEEVSADYITVM D+GT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVIAEKSGVIEEVSADYITVMADDGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPW
Sbjct 667 RRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF
Sbjct 847 VIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGWK+D A G+PDWA LP+ELL A
Sbjct 907 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWKIDVAAGMPDWAVNLPEELLHA 966
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
+PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+VD DGKA+LFDGRSGEPFPYPVTVG
Sbjct 967 KPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVDGDGKAVLFDGRSGEPFPYPVTVG 1026
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1027 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA+IE
Sbjct 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGASIE 1146
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LRE EDEDLERAAANLGINLSRNESAS+EDLA
Sbjct 1147 LRESEDEDLERAAANLGINLSRNESASIEDLA 1178
>gi|167967486|ref|ZP_02549763.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
H37Ra]
Length=1096
Score = 2238 bits (5799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1095/1096 (99%), Positives = 1096/1096 (100%), Gaps = 0/1096 (0%)
Query 77 VGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINN 136
+GGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINN
Sbjct 1 MGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINN 60
Query 137 NTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSV 196
NTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSV
Sbjct 61 NTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSV 120
Query 197 KVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTL 256
KVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTL
Sbjct 121 KVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTL 180
Query 257 EKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL 316
EKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL
Sbjct 181 EKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL 240
Query 317 HVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVG 376
HVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVG
Sbjct 241 HVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVG 300
Query 377 ELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQ 436
ELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQ
Sbjct 301 ELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQ 360
Query 437 NNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSV 496
NNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSV
Sbjct 361 NNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSV 420
Query 497 YARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVR 556
YARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVR
Sbjct 421 YARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVR 480
Query 557 RKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSE 616
RKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSE
Sbjct 481 RKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSE 540
Query 617 APLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGT 676
APLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGT
Sbjct 541 APLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGT 600
Query 677 CANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLV 736
CANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLV
Sbjct 601 CANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLV 660
Query 737 EEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDIL 796
EEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDIL
Sbjct 661 EEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDIL 720
Query 797 VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELP 856
VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELP
Sbjct 721 VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELP 780
Query 857 AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV 916
AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV
Sbjct 781 AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV 840
Query 917 PRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQE 976
PRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQE
Sbjct 841 PRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQE 900
Query 977 AELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIH 1036
AELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIH
Sbjct 901 AELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIH 960
Query 1037 ARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKV 1096
ARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKV
Sbjct 961 ARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKV 1020
Query 1097 YEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANL 1156
YEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANL
Sbjct 1021 YEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANL 1080
Query 1157 GINLSRNESASVEDLA 1172
GINLSRNESASVEDLA
Sbjct 1081 GINLSRNESASVEDLA 1096
>gi|339297337|gb|AEJ49447.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis
CCDC5180]
Length=1096
Score = 2234 bits (5788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1093/1096 (99%), Positives = 1094/1096 (99%), Gaps = 0/1096 (0%)
Query 77 VGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINN 136
+GGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINN
Sbjct 1 MGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINN 60
Query 137 NTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSV 196
NTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSV
Sbjct 61 NTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSV 120
Query 197 KVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTL 256
KVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTL
Sbjct 121 KVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTL 180
Query 257 EKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL 316
EKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL
Sbjct 181 EKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL 240
Query 317 HVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVG 376
HVGEPITSSTL EEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVG
Sbjct 241 HVGEPITSSTLNEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVG 300
Query 377 ELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQ 436
ELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQ
Sbjct 301 ELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQ 360
Query 437 NNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSV 496
NNPLSGLTHKRRL ALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSV
Sbjct 361 NNPLSGLTHKRRLLALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSV 420
Query 497 YARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVR 556
YARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVR
Sbjct 421 YARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVR 480
Query 557 RKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSE 616
RKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSE
Sbjct 481 RKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSE 540
Query 617 APLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGT 676
APLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGT
Sbjct 541 APLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGT 600
Query 677 CANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLV 736
CANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLV
Sbjct 601 CANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLV 660
Query 737 EEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDIL 796
EEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDIL
Sbjct 661 EEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDIL 720
Query 797 VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELP 856
VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELP
Sbjct 721 VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELP 780
Query 857 AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV 916
AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV
Sbjct 781 AGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGV 840
Query 917 PRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQE 976
PRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQE
Sbjct 841 PRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQE 900
Query 977 AELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIH 1036
AELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIH
Sbjct 901 AELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIH 960
Query 1037 ARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKV 1096
ARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKV
Sbjct 961 ARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKV 1020
Query 1097 YEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANL 1156
YEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANL
Sbjct 1021 YEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANL 1080
Query 1157 GINLSRNESASVEDLA 1172
GINLSRNESASVEDLA
Sbjct 1081 GINLSRNESASVEDLA 1096
>gi|253740489|gb|ACT34878.1| RNA polymerase sigma factor [Mycobacterium haemophilum]
Length=1182
Score = 2231 bits (5781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1105/1174 (95%), Positives = 1131/1174 (97%), Gaps = 4/1174 (0%)
Query 3 DSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSP 62
D Q+KT SPS SRPQSSSNNSVPGAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIGSP
Sbjct 9 DFGQNKTDVSPSQSRPQSSSNNSVPGAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSP 68
Query 63 RWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMT 122
RWR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMT
Sbjct 69 RWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT 128
Query 123 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 182
YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD
Sbjct 129 YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD 188
Query 183 ETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI 242
ETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI
Sbjct 189 ETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI 248
Query 243 VERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 302
+ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL
Sbjct 249 IERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 308
Query 303 ARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETD 362
ARVGRYKVNKKLGLH GEPITSSTLTEE+VVATIEYLVRLHEGQ+TMTVPGGVEVPVETD
Sbjct 309 ARVGRYKVNKKLGLHAGEPITSSTLTEEEVVATIEYLVRLHEGQSTMTVPGGVEVPVETD 368
Query 363 DIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 422
DIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK
Sbjct 369 DIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 428
Query 423 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 482
EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET
Sbjct 429 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 488
Query 483 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPI 542
PEGP IGLIGS SVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQANSP
Sbjct 489 PEGPKIGLIGSWSVYARVNPFGFIETPYRKVVDGVVTDDIEYLTADEEDRHVVAQANSPT 548
Query 543 DADGR----FVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANR 598
+G F EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDDANR
Sbjct 549 KDNGAGAQVFAEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANR 608
Query 599 ALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDN 658
ALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAE+SGVIEEVSADYITVM D+
Sbjct 609 ALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITVMADD 668
Query 659 GTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIM 718
GTRRTYRMRKFARSNHGTCANQ PIVD+GDRVEAGQVIADGPCT++GEMALGKNLLVAIM
Sbjct 669 GTRRTYRMRKFARSNHGTCANQSPIVDSGDRVEAGQVIADGPCTENGEMALGKNLLVAIM 728
Query 719 PWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADL 778
PWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADL
Sbjct 729 PWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADL 788
Query 779 DERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGES 838
DERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKA EVRDTSLKV HGES
Sbjct 789 DERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAPEVRDTSLKVAHGES 848
Query 839 GKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDM 898
KVI IRVFSREDED+ PAGVNELV VYVAQKRKISDGDKLAGRHGNKGVIGKILP EDM
Sbjct 849 EKVIAIRVFSREDEDDFPAGVNELVGVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDM 908
Query 899 PFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELL 958
PFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGWK+D A G+P+WAA LP ELL
Sbjct 909 PFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWKIDVAGGMPEWAANLPAELL 968
Query 959 EAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVT 1018
A+PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+VD DGKA+LFDGRSGEPFPYPVT
Sbjct 969 HAEPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVDGDGKAVLFDGRSGEPFPYPVT 1028
Query 1019 VGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYT 1078
VGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYT
Sbjct 1029 VGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYT 1088
Query 1079 LQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAA 1138
LQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAA
Sbjct 1089 LQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAA 1148
Query 1139 IELREGEDEDLERAAANLGINLSRNESASVEDLA 1172
IELREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1149 IELREGEDEDLERAAANLGINLSRNESASVEDLA 1182
>gi|41410228|ref|NP_963064.1| DNA-directed RNA polymerase subunit beta [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|41399062|gb|AAS06680.1| RpoB [Mycobacterium avium subsp. paratuberculosis K-10]
Length=1198
Score = 2228 bits (5773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1102/1172 (95%), Positives = 1123/1172 (96%), Gaps = 3/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LAD RQSKT S S SS N SVPGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIG
Sbjct 30 LADFRQSKTDRPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIG 89
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
+PRWRE+A RGD P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 90 APRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 149
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 150 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 209
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 210 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 269
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 270 QITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 329
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLH GEPITSSTLTEEDVVATIEYLVRLHEGQ TMTVPGG+EVPVE
Sbjct 330 DLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVE 389
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 390 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 449
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 450 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 509
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+DEI YLTADEEDRHVVAQANS
Sbjct 510 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANS 569
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID GRF E RVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 570 PIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 629
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAE+SGVIEEVSADYITVM D+GT
Sbjct 630 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITVMADDGT 689
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKF RSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPW
Sbjct 690 RHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPW 749
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 750 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 809
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 810 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 869
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF
Sbjct 870 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPF 929
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D G P+WA LP+EL A
Sbjct 930 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWAVNLPEELRHA 986
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPN IVSTPVFDGA+E EL G+LSCTLPNRDG+V+VD DGKA+LFDGRSGEPFPYPVTVG
Sbjct 987 QPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFPYPVTVG 1046
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1047 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1106
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1107 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1166
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1167 LREGEDEDLERAAANLGINLSRNESASVEDLA 1198
>gi|88909143|sp|Q73SE4.2|RPOB_MYCPA RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|158512716|sp|A0QL49.2|RPOB_MYCA1 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
Length=1175
Score = 2228 bits (5773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1102/1172 (95%), Positives = 1123/1172 (96%), Gaps = 3/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LAD RQSKT S S SS N SVPGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIG
Sbjct 7 LADFRQSKTDRPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
+PRWRE+A RGD P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 67 APRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLH GEPITSSTLTEEDVVATIEYLVRLHEGQ TMTVPGG+EVPVE
Sbjct 307 DLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+DEI YLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID GRF E RVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAE+SGVIEEVSADYITVM D+GT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITVMADDGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKF RSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPW
Sbjct 667 RHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF
Sbjct 847 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D G P+WA LP+EL A
Sbjct 907 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWAVNLPEELRHA 963
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
QPN IVSTPVFDGA+E EL G+LSCTLPNRDG+V+VD DGKA+LFDGRSGEPFPYPVTVG
Sbjct 964 QPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFPYPVTVG 1023
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1024 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1083
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1084 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1143
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
LREGEDEDLERAAANLGINLSRNESASVEDLA
Sbjct 1144 LREGEDEDLERAAANLGINLSRNESASVEDLA 1175
>gi|254776938|ref|ZP_05218454.1| DNA-directed RNA polymerase subunit beta [Mycobacterium avium
subsp. avium ATCC 25291]
Length=1148
Score = 2223 bits (5760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1090/1150 (95%), Positives = 1111/1150 (97%), Gaps = 3/1150 (0%)
Query 23 NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEE 82
N SVPGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIG+PRWRE+A RGD P GGLEE
Sbjct 2 NGSVPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGAPRWREAAIARGDAEPKGGLEE 61
Query 83 VLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIK 142
VL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIK
Sbjct 62 VLDELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIK 121
Query 143 SQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSR 202
SQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+KTLHSVKVIPSR
Sbjct 122 SQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSR 181
Query 203 GAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTV 262
GAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM STLEKDNT
Sbjct 182 GAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSEIMMSTLEKDNTA 241
Query 263 GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPI 322
GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLH GEPI
Sbjct 242 GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEPI 301
Query 323 TSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQ 382
TSSTLTEEDVVATIEYLVRLHEGQ TMTVPGG+EVPVETDDIDHFGNRRLRTVGELIQNQ
Sbjct 302 TSSTLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQNQ 361
Query 383 IRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSG 442
IRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSG
Sbjct 362 IRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSG 421
Query 443 LTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNP 502
LTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNP
Sbjct 422 LTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNP 481
Query 503 FGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEV 562
FGFIETPYRKVVDGVV+DEI YLTADEEDRHVVAQANSPID GRF E RVLVRRKAGEV
Sbjct 482 FGFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDGKGRFAEARVLVRRKAGEV 541
Query 563 EYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGT 622
EYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGT
Sbjct 542 EYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGT 601
Query 623 GMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQCP 682
GMELRAAIDAGDVVVAE+SGVIEEVSADYITVM D+GTR TYRMRKF RSNHGTCANQ P
Sbjct 602 GMELRAAIDAGDVVVAEKSGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQSP 661
Query 683 IVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLT 742
IVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLT
Sbjct 662 IVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLT 721
Query 743 SIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKVTP 802
SIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEVRDGDILVGKVTP
Sbjct 722 SIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTP 781
Query 803 KGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNEL 862
KGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRED+DELPAGVNEL
Sbjct 782 KGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNEL 841
Query 863 VRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNI 922
VRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFL DGTPVDIILNTHGVPRRMNI
Sbjct 842 VRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNI 901
Query 923 GQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGL 982
GQILETHLGW A SGW +D G P+WA LP+EL AQPN IVSTPVFDGA+E EL G+
Sbjct 902 GQILETHLGWVAKSGWNID---GNPEWAVNLPEELRHAQPNQIVSTPVFDGAKEEELAGM 958
Query 983 LSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGP 1042
LSCTLPNRDG+V+VD DGKA+LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGP
Sbjct 959 LSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGP 1018
Query 1043 YSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVK 1102
YSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVK
Sbjct 1019 YSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVK 1078
Query 1103 GENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSR 1162
GENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSR
Sbjct 1079 GENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSR 1138
Query 1163 NESASVEDLA 1172
NESASVEDLA
Sbjct 1139 NESASVEDLA 1148
>gi|118465939|ref|YP_883637.1| DNA-directed RNA polymerase subunit beta [Mycobacterium avium
104]
gi|118167226|gb|ABK68123.1| DNA-directed RNA polymerase, beta subunit [Mycobacterium avium
104]
gi|336460550|gb|EGO39443.1| DNA-directed RNA polymerase, beta subunit [Mycobacterium avium
subsp. paratuberculosis S397]
Length=1144
Score = 2219 bits (5750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1087/1147 (95%), Positives = 1109/1147 (97%), Gaps = 3/1147 (0%)
Query 26 VPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLY 85
+PGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIG+PRWRE+A RGD P GGLEEVL
Sbjct 1 MPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGAPRWREAAIARGDAEPKGGLEEVLD 60
Query 86 ELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT 145
ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT
Sbjct 61 ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT 120
Query 146 VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAW 205
VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+KTLHSVKVIPSRGAW
Sbjct 121 VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAW 180
Query 206 LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTD 265
LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM STLEKDNT GTD
Sbjct 181 LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSEIMMSTLEKDNTAGTD 240
Query 266 EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSS 325
EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLH GEPITSS
Sbjct 241 EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEPITSS 300
Query 326 TLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRV 385
TLTEEDVVATIEYLVRLHEGQ TMTVPGG+EVPVETDDIDHFGNRRLRTVGELIQNQIRV
Sbjct 301 TLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQNQIRV 360
Query 386 GMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 445
GMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH
Sbjct 361 GMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH 420
Query 446 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 505
KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF
Sbjct 421 KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF 480
Query 506 IETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEVEYV 565
IETPYRKVVDGVV+DEI YLTADEEDRHVVAQANSPID GRF E RVLVRRKAGEVEYV
Sbjct 481 IETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDDKGRFAEARVLVRRKAGEVEYV 540
Query 566 PSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 625
PSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME
Sbjct 541 PSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 600
Query 626 LRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQCPIVD 685
LRAAIDAGDVVVAE+SGVIEEVSADYITVM D+GTR TYRMRKF RSNHGTCANQ PIVD
Sbjct 601 LRAAIDAGDVVVAEKSGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQSPIVD 660
Query 686 AGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 745
AGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH
Sbjct 661 AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH 720
Query 746 IEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 805
IEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE
Sbjct 721 IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE 780
Query 806 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRV 865
TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRED+DELPAGVNELVRV
Sbjct 781 TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRV 840
Query 866 YVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQI 925
YVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFL DGTPVDIILNTHGVPRRMNIGQI
Sbjct 841 YVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQI 900
Query 926 LETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLLSC 985
LETHLGW A SGW +D G P+WA LP+EL AQPN IVSTPVFDGA+E EL G+LSC
Sbjct 901 LETHLGWVAKSGWNID---GNPEWAVNLPEELRHAQPNQIVSTPVFDGAKEEELAGMLSC 957
Query 986 TLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1045
TLPNRDG+V+VD DGKA+LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM
Sbjct 958 TLPNRDGEVMVDGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSM 1017
Query 1046 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1105
ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN
Sbjct 1018 ITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1077
Query 1106 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRNES 1165
IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRNES
Sbjct 1078 IPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRNES 1137
Query 1166 ASVEDLA 1172
ASVEDLA
Sbjct 1138 ASVEDLA 1144
>gi|254822773|ref|ZP_05227774.1| DNA-directed RNA polymerase subunit beta [Mycobacterium intracellulare
ATCC 13950]
gi|226511029|gb|ABD96035.2| RpoB [Mycobacterium indicus pranii]
Length=1148
Score = 2214 bits (5737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1086/1151 (95%), Positives = 1112/1151 (97%), Gaps = 7/1151 (0%)
Query 26 VPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGD----VNPVGGLE 81
+PGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIG+PRWRE+AA RGD V PVGGLE
Sbjct 1 MPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGAPRWREAAAARGDGKPGVTPVGGLE 60
Query 82 EVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI 141
EVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI
Sbjct 61 EVLLELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI 120
Query 142 KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPS 201
KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+K LHSVKVIPS
Sbjct 121 KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKLLHSVKVIPS 180
Query 202 RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNT 261
RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM STLEKDNT
Sbjct 181 RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSEIMMSTLEKDNT 240
Query 262 VGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEP 321
GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLH GEP
Sbjct 241 AGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEP 300
Query 322 ITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQN 381
ITSSTLTEEDVVATIEYLVRLHEGQ TMTVPGG+EVPVETDDIDHFGNRRLRTVGELIQN
Sbjct 301 ITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQN 360
Query 382 QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS 441
QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS
Sbjct 361 QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS 420
Query 442 GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN 501
GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN
Sbjct 421 GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN 480
Query 502 PFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGE 561
PFGFIETPYRKVVDGVV+DEI YLTADEEDRHVVAQANSPIDA GRF E RVLVRRKAGE
Sbjct 481 PFGFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDAKGRFEESRVLVRRKAGE 540
Query 562 VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG 621
VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG
Sbjct 541 VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG 600
Query 622 TGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQC 681
TGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GTR TYRMRKF RSNHGTCANQ
Sbjct 601 TGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQS 660
Query 682 PIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL 741
PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL
Sbjct 661 PIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL 720
Query 742 TSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKVT 801
TSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEVRDGDILVGKVT
Sbjct 721 TSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVT 780
Query 802 PKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNE 861
PKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRED+DELPAGVNE
Sbjct 781 PKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNE 840
Query 862 LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMN 921
LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFL DGTPVDIILNTHGVPRRMN
Sbjct 841 LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMN 900
Query 922 IGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQG 981
IGQILETHLGW A SGW ++ G PDWA LP+EL AQP+ IVSTPVFDGA+E EL G
Sbjct 901 IGQILETHLGWVAKSGWNIE---GSPDWAVNLPEELRHAQPDQIVSTPVFDGAKEEELAG 957
Query 982 LLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG 1041
+LSCTLPNRDG+V+VD DGK++LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG
Sbjct 958 MLSCTLPNRDGEVMVDGDGKSVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG 1017
Query 1042 PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV 1101
PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV
Sbjct 1018 PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV 1077
Query 1102 KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLS 1161
KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLS
Sbjct 1078 KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLS 1137
Query 1162 RNESASVEDLA 1172
RNESASVEDLA
Sbjct 1138 RNESASVEDLA 1148
>gi|296168513|ref|ZP_06850329.1| DNA-directed RNA polymerase subunit beta [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896691|gb|EFG76328.1| DNA-directed RNA polymerase subunit beta [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=1149
Score = 2213 bits (5735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1152 (95%), Positives = 1112/1152 (97%), Gaps = 8/1152 (0%)
Query 26 VPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLY 85
+PGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIGSPRWRE+AA RGDV PVGGLEEVL
Sbjct 1 MPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGSPRWREAAAARGDVKPVGGLEEVLD 60
Query 86 ELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT 145
ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT
Sbjct 61 ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT 120
Query 146 VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAW 205
VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+K LHSVKVIPSRGAW
Sbjct 121 VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKLLHSVKVIPSRGAW 180
Query 206 LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTD 265
LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM TLEKDNT GTD
Sbjct 181 LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIHERFGFSEIMMGTLEKDNTAGTD 240
Query 266 EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSS 325
EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLH GEPITSS
Sbjct 241 EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEPITSS 300
Query 326 TLTEEDVVATIEYLVRLHEGQT-----TMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQ 380
TLTEEDVVATIEYLVRLH +T MTVPGG+EVPVETDDIDHFGNRRLRTVGELIQ
Sbjct 301 TLTEEDVVATIEYLVRLHHARTDGHPAVMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQ 360
Query 381 NQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPL 440
NQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPL
Sbjct 361 NQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPL 420
Query 441 SGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV 500
SGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV
Sbjct 421 SGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV 480
Query 501 NPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAG 560
NPFGFIETPYRKVVDGVV+DEI YLTADEEDRHVVAQANSPIDA GRF E RVLVRRKAG
Sbjct 481 NPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDASGRFEESRVLVRRKAG 540
Query 561 EVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLV 620
EVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLV
Sbjct 541 EVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLV 600
Query 621 GTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQ 680
GTGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GTR TYRMRKF RSNHGTCANQ
Sbjct 601 GTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQ 660
Query 681 CPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDV 740
PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDV
Sbjct 661 SPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDV 720
Query 741 LTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKV 800
LTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEVRDGDILVGKV
Sbjct 721 LTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKV 780
Query 801 TPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVN 860
TPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRED+DELPAGVN
Sbjct 781 TPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVN 840
Query 861 ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRM 920
ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKIL EDMPFL DGTPVDIILNTHGVPRRM
Sbjct 841 ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILAQEDMPFLPDGTPVDIILNTHGVPRRM 900
Query 921 NIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQ 980
NIGQILETHLGW A SGW ++ G PDWAA LP++LL AQPNAIVSTPVFDGA+EAELQ
Sbjct 901 NIGQILETHLGWVAKSGWNIE---GSPDWAANLPEDLLHAQPNAIVSTPVFDGAREAELQ 957
Query 981 GLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARST 1040
GLLSCTLPNRD +V+VD DGKA+LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARST
Sbjct 958 GLLSCTLPNRDNEVMVDGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARST 1017
Query 1041 GPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAI 1100
GPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAI
Sbjct 1018 GPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAI 1077
Query 1101 VKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINL 1160
VKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINL
Sbjct 1078 VKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINL 1137
Query 1161 SRNESASVEDLA 1172
SRNESASVEDLA
Sbjct 1138 SRNESASVEDLA 1149
>gi|62720654|gb|AAX93863.1| RNA polymerase subunit B [Mycobacterium barrassiae]
Length=1167
Score = 2206 bits (5716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1173 (93%), Positives = 1120/1173 (96%), Gaps = 13/1173 (1%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA SRQSK+A +NNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SFEWLIG
Sbjct 7 LAGSRQSKSAVV---------TNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIG 57
Query 61 SPRWRESAAERGD-VNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDK 119
S RWRE+A RGD + PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDK
Sbjct 58 SDRWRENAKLRGDAIEPVGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 117
Query 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 179
DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV
Sbjct 118 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 177
Query 180 YFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTS 239
YFDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+
Sbjct 178 YFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 237
Query 240 EQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 299
EQIVERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR
Sbjct 238 EQIVERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 297
Query 300 YDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPV 359
YDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLH+G TMT PGGVEVPV
Sbjct 298 YDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGVEVPV 357
Query 360 ETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVA 419
E DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVA
Sbjct 358 EVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVA 417
Query 420 AIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCP 479
AIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCP
Sbjct 418 AIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCP 477
Query 480 IETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQAN 539
IETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+D+I YLTADEEDRHVVAQAN
Sbjct 478 IETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVKDGVVTDDIEYLTADEEDRHVVAQAN 537
Query 540 SPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRA 599
SP D GRF+E RVLVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDANRA
Sbjct 538 SPTDEKGRFLEERVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRA 597
Query 600 LMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNG 659
LMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+G
Sbjct 598 LMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDG 657
Query 660 TRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMP 719
TR TYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAIMP
Sbjct 658 TRHTYRMRKFARSNHGTCANQRPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMP 717
Query 720 WEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLD 779
WEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLD
Sbjct 718 WEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLD 777
Query 780 ERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG 839
ERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG
Sbjct 778 ERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG 837
Query 840 KVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMP 899
KVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMP
Sbjct 838 KVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMP 897
Query 900 FLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLE 959
FL DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GWK+D G PDWAA LP+E+LE
Sbjct 898 FLPDGTPVDIILNTHGVPRRMNIGQILETHLGWAAKAGWKID---GSPDWAANLPEEMLE 954
Query 960 AQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTV 1019
+PN IVSTPVFDGA+EAELQGLLS TLPNRDGD LVD DGKA LFDGRSGEPFPYPVTV
Sbjct 955 VEPNTIVSTPVFDGAREAELQGLLSATLPNRDGDTLVDGDGKAQLFDGRSGEPFPYPVTV 1014
Query 1020 GYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL 1079
GYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL
Sbjct 1015 GYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL 1074
Query 1080 QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI 1139
QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI
Sbjct 1075 QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI 1134
Query 1140 ELREGEDEDLERAAANLGINLSRNESASVEDLA 1172
E+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1135 EMRDGDDEDLERAAANLGINLSRNESASVEDLA 1167
>gi|581334|emb|CAA78668.1| RNA polymerase beta subunit [Mycobacterium leprae]
Length=1179
Score = 2205 bits (5714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1099/1173 (94%), Positives = 1120/1173 (96%), Gaps = 1/1173 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
L D QSKT SPS SRPQSS NNSVPGAPNR+SFAKLREPLEVPGLLDVQTDSFEWLIG
Sbjct 7 LPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDSFEWLIG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
SP WR +AA RGD+ PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPV+ECKDKD
Sbjct 67 SPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKST+KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGLH GE ITSSTLTEEDVVATIEYLVRLHEGQ+TMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID GR VRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PIDEAGRSSSRACWVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSE PLVGTGMELRAAIDAG VVVAE+SGVIEEVSADYITVM D+GT
Sbjct 607 MGANMQRQAVPLVRSERPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
RRTYRMRKFARSNHGTCANQ PIVDAGDRVEAGQVIADGPCT++GEMALGKNLLVAI
Sbjct 667 RRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAINAV 726
Query 721 EGHNY-EDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLD 779
G EDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLD
Sbjct 727 GGSTTNEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLD 786
Query 780 ERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG 839
ERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG
Sbjct 787 ERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESG 846
Query 840 KVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMP 899
KVIGIRVFS ED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMP
Sbjct 847 KVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMP 906
Query 900 FLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLE 959
FL DGTPVDIILNTHGVPRRMN+GQILETHLGW A SGWK+D A G+PDWA LP+ELL
Sbjct 907 FLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLPEELLH 966
Query 960 AQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTV 1019
A PN IVSTPVFDGA+E ELQGLLS TLPNRDGDV+V DGKA+LFDGRSGEPFPYPVTV
Sbjct 967 AAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTV 1026
Query 1020 GYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL 1079
GYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL
Sbjct 1027 GYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTL 1086
Query 1080 QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI 1139
QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI
Sbjct 1087 QELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI 1146
Query 1140 ELREGEDEDLERAAANLGINLSRNESASVEDLA 1172
ELREGEDEDLERAAANLGINLSRNESAS+EDLA
Sbjct 1147 ELREGEDEDLERAAANLGINLSRNESASIEDLA 1179
>gi|342858843|ref|ZP_08715497.1| DNA-directed RNA polymerase subunit beta [Mycobacterium colombiense
CECT 3035]
gi|342133084|gb|EGT86287.1| DNA-directed RNA polymerase subunit beta [Mycobacterium colombiense
CECT 3035]
Length=1148
Score = 2205 bits (5713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1081/1151 (94%), Positives = 1110/1151 (97%), Gaps = 7/1151 (0%)
Query 26 VPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDV----NPVGGLE 81
+PGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIG+PRWRE+A RG+ PVGGLE
Sbjct 1 MPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGAPRWREAAMARGETAAGATPVGGLE 60
Query 82 EVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI 141
EVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI
Sbjct 61 EVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI 120
Query 142 KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPS 201
KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+K LHSVKVIPS
Sbjct 121 KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKLLHSVKVIPS 180
Query 202 RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNT 261
RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSEIM STLEKDNT
Sbjct 181 RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSEIMMSTLEKDNT 240
Query 262 VGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEP 321
GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL+VG P
Sbjct 241 AGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLNVGAP 300
Query 322 ITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQN 381
ITSSTLTEEDVVATIEYLVRLHEGQ TMTVPGG EVPVETDDIDHFGNRRLRTVGELIQN
Sbjct 301 ITSSTLTEEDVVATIEYLVRLHEGQATMTVPGGTEVPVETDDIDHFGNRRLRTVGELIQN 360
Query 382 QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS 441
QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS
Sbjct 361 QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS 420
Query 442 GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN 501
GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN
Sbjct 421 GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN 480
Query 502 PFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGE 561
PFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANSPID GRF E RVLVRRKAGE
Sbjct 481 PFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQANSPIDDKGRFEESRVLVRRKAGE 540
Query 562 VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG 621
VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG
Sbjct 541 VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG 600
Query 622 TGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQC 681
TGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GTR TYRMRKF RSNHGTCANQ
Sbjct 601 TGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQS 660
Query 682 PIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL 741
PIVDAG+RVEAGQVIADGPCT++GEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL
Sbjct 661 PIVDAGERVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL 720
Query 742 TSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKVT 801
TSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEVRDGDILVGKVT
Sbjct 721 TSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVT 780
Query 802 PKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNE 861
PKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRED+DELPAGVNE
Sbjct 781 PKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNE 840
Query 862 LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMN 921
LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFL DGTPVDIILNTHGVPRRMN
Sbjct 841 LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMN 900
Query 922 IGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQG 981
IGQILETHLGW A SGW ++ G P+WA LP++L AQP+ IVSTPVFDGA+E ELQG
Sbjct 901 IGQILETHLGWVAKSGWNIE---GSPEWAVNLPEQLRHAQPDQIVSTPVFDGAKEEELQG 957
Query 982 LLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG 1041
+LSCTLPNRDG+V+V+ DGKA+LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG
Sbjct 958 MLSCTLPNRDGEVMVNGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG 1017
Query 1042 PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV 1101
PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV
Sbjct 1018 PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV 1077
Query 1102 KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLS 1161
KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLS
Sbjct 1078 KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLS 1137
Query 1162 RNESASVEDLA 1172
RNESASVEDLA
Sbjct 1138 RNESASVEDLA 1148
>gi|259559669|gb|ACW83033.1| DNA-directed RNA polymerase subunit beta [Mycobacterium sp. DSM
3803]
Length=1178
Score = 2205 bits (5713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1075/1172 (92%), Positives = 1122/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A +++NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+G
Sbjct 15 LAVSSQSKSA--------NATTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S RWR++A +RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 67 SDRWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIM TLEKD+T GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVV+GVV+D+I YLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
P DADGRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PTDADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVV++++GVIEEVSADY+TVM D+GT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTVMADDGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT++GEMALGKNLLVAIMPW
Sbjct 667 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 847 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW ++ A G PDWA++LP+ LL A
Sbjct 907 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLPEGLLSA 966
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGAQE EL GLL TLPNRDG+V+VD DGKA LFDGRSGEPFPYPVTVG
Sbjct 967 PADSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFPYPVTVG 1026
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1027 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1146
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1147 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1178
>gi|34391555|gb|AAN65355.1| RpoB [Mycobacterium mageritense]
gi|34391557|gb|AAN65356.1| RpoB [Mycobacterium mageritense]
Length=1178
Score = 2204 bits (5710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1172 (92%), Positives = 1122/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A +++NNSVPGAPNRVS+AKLREPLEVPGLLDVQTDSFEWL+G
Sbjct 15 LAVSSQSKSA--------NATTNNSVPGAPNRVSYAKLREPLEVPGLLDVQTDSFEWLVG 66
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S RWR++A +RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 67 SDRWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 126
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 127 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 186
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDETIDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
Sbjct 187 FDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 246
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QIVERFGFSEIM TLEKD+T GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 247 QIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 306
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 307 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 366
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 367 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 426
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 427 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPI 486
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVV+GVV+D+I YLTADEEDRHVVAQANS
Sbjct 487 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVAQANS 546
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
P DADGRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 547 PTDADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 606
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVV++++GVIEEVSADY+TVM D+GT
Sbjct 607 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTVMADDGT 666
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQVIADGPCT++GEMALGKNLLVAIMPW
Sbjct 667 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLLVAIMPW 726
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 727 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 786
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 787 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 846
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 847 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 906
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW ++ A G PDWA++LP+ LL A
Sbjct 907 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLPEGLLSA 966
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGAQE EL GLL TLPNRDG+V+VD DGKA LFDGRSGEPFPYPVTVG
Sbjct 967 PADSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFPYPVTVG 1026
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1027 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1086
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1087 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1146
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1147 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1178
>gi|34595745|gb|AAQ76595.1| RpoB [Mycobacterium goodii]
Length=1169
Score = 2201 bits (5702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1070/1162 (93%), Positives = 1117/1162 (97%), Gaps = 0/1162 (0%)
Query 11 ASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAE 70
A S S+ + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+GS RWR++A +
Sbjct 8 AVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQAAID 67
Query 71 RGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVT 130
RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKA VDECKDKDMTYAAPLFVT
Sbjct 68 RGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAPLFVT 127
Query 131 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTD 190
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+
Sbjct 128 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTE 187
Query 191 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSE 250
KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQIVERFGFSE
Sbjct 188 KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSE 247
Query 251 IMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
IM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV
Sbjct 248 IMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 307
Query 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
NKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE DDIDHFGNR
Sbjct 308 NKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDDIDHFGNR 367
Query 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 430
RLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
Sbjct 368 RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 427
Query 431 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 490
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL
Sbjct 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 487
Query 491 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVE 550
IGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQANSP D +GRF E
Sbjct 488 IGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPTDENGRFTE 547
Query 551 PRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
Sbjct 548 ERVMVRKKGGEVEFVSAGQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Query 611 PLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFA 670
PLVRSEAPLVGTGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GTR++YR+RKFA
Sbjct 608 PLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQSYRLRKFA 667
Query 671 RSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAII 730
RSNHGTCANQ PIVDAG RVEAGQVIADGPCT +GEMALGKNLLVAIMPWEGHNYEDAII
Sbjct 668 RSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHNYEDAII 727
Query 731 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEV 790
LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEV
Sbjct 728 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 787
Query 791 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 850
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE
Sbjct 788 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 847
Query 851 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 910
D+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL DGTPVDII
Sbjct 848 DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDII 907
Query 911 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 970
LNTHGVPRRMNIGQILETHLGW A +GW +D A GVPDWA++LP+EL A ++IV+TPV
Sbjct 908 LNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYTAPSDSIVATPV 967
Query 971 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1030
FDGAQE EL GLL TLPNRDG+V+V+ADGKA LFDGRSGEPFPYPVTVGYMYI+KLHHL
Sbjct 968 FDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFPYPVTVGYMYILKLHHL 1027
Query 1031 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1090
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
Sbjct 1028 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1087
Query 1091 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE 1150
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDLE
Sbjct 1088 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLE 1147
Query 1151 RAAANLGINLSRNESASVEDLA 1172
RAAANLGINLSRNESASVEDLA
Sbjct 1148 RAAANLGINLSRNESASVEDLA 1169
>gi|116488418|gb|AAQ76602.2| RpoB [Mycobacterium wolinskyi]
Length=1169
Score = 2198 bits (5696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1070/1162 (93%), Positives = 1113/1162 (96%), Gaps = 0/1162 (0%)
Query 11 ASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAE 70
A S S + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+GS WR+ A +
Sbjct 8 AVSSQSTANAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSDEWRQKAID 67
Query 71 RGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVT 130
RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVT
Sbjct 68 RGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVT 127
Query 131 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTD 190
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+
Sbjct 128 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTE 187
Query 191 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSE 250
KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQIVERFGFSE
Sbjct 188 KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSE 247
Query 251 IMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
IM TLEKD+T GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV
Sbjct 248 IMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 307
Query 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
NKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE DDIDHFGNR
Sbjct 308 NKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDDIDHFGNR 367
Query 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 430
RLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
Sbjct 368 RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 427
Query 431 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 490
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGL
Sbjct 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGL 487
Query 491 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVE 550
IGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQANSPIDADGRF E
Sbjct 488 IGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPIDADGRFTE 547
Query 551 PRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
Sbjct 548 DRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Query 611 PLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFA 670
PLVRSEAPLVGTGMELRAAIDAGDVVV+E++GV+EEVSADY+TVM D+GTR TYRMRKFA
Sbjct 608 PLVRSEAPLVGTGMELRAAIDAGDVVVSEKTGVVEEVSADYVTVMADDGTRHTYRMRKFA 667
Query 671 RSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAII 730
RSNHGTCANQ PIVDAG RVE+GQVIADGPCT +GEMALGKNLLVAIMPWEGHNYEDAII
Sbjct 668 RSNHGTCANQRPIVDAGQRVESGQVIADGPCTQNGEMALGKNLLVAIMPWEGHNYEDAII 727
Query 731 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEV 790
LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEV
Sbjct 728 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 787
Query 791 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 850
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE
Sbjct 788 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 847
Query 851 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 910
D+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL DGTPVDII
Sbjct 848 DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDII 907
Query 911 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 970
LNTHGVPRRMNIGQILETHLGW A +GW +D A G PDWA++LP++L A ++IVSTPV
Sbjct 908 LNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPDWASKLPEQLYSAPADSIVSTPV 967
Query 971 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1030
FDGAQE ELQGLL TLPNRDG+V+VDADGKA LFDGRSGEPFPYPVTVGYMYI+KLHHL
Sbjct 968 FDGAQEGELQGLLGSTLPNRDGEVMVDADGKATLFDGRSGEPFPYPVTVGYMYILKLHHL 1027
Query 1031 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1090
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
Sbjct 1028 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1087
Query 1091 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE 1150
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+D DLE
Sbjct 1088 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDADLE 1147
Query 1151 RAAANLGINLSRNESASVEDLA 1172
RAAANLGINLSRNESASVEDLA
Sbjct 1148 RAAANLGINLSRNESASVEDLA 1169
>gi|34595743|gb|AAQ76594.1| RpoB [Mycobacterium smegmatis]
Length=1169
Score = 2194 bits (5685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1066/1162 (92%), Positives = 1115/1162 (96%), Gaps = 0/1162 (0%)
Query 11 ASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAE 70
A S S+ + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+GS RWR++A +
Sbjct 8 AVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQAAID 67
Query 71 RGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVT 130
RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKA VDECKDKDMTYAAPLFVT
Sbjct 68 RGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAPLFVT 127
Query 131 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTD 190
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+
Sbjct 128 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTE 187
Query 191 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSE 250
KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQIVERFGFSE
Sbjct 188 KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSE 247
Query 251 IMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
IM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV
Sbjct 248 IMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 307
Query 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
NKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT+MTVPGGVEVPVE DDIDHFGNR
Sbjct 308 NKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDDIDHFGNR 367
Query 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 430
RLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
Sbjct 368 RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 427
Query 431 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 490
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL
Sbjct 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 487
Query 491 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVE 550
IGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVAQANSP D +GRF E
Sbjct 488 IGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDENGRFTE 547
Query 551 PRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
Sbjct 548 DRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Query 611 PLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFA 670
PLVRSEAPLVGTGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GTR++YR+RKFA
Sbjct 608 PLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQSYRLRKFA 667
Query 671 RSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAII 730
RSNHGTCANQ PIVDAG RVEAGQVIADGPCT +GEMALGKNLLVAIMPWEGHNYEDAII
Sbjct 668 RSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHNYEDAII 727
Query 731 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEV 790
LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEV
Sbjct 728 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 787
Query 791 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 850
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE
Sbjct 788 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 847
Query 851 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 910
D+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL DGTPVDII
Sbjct 848 DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDII 907
Query 911 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 970
LNTHGVPRRMNIGQILETHLGW A +GW +D A GVPDWA++LP+EL A ++ V+TPV
Sbjct 908 LNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADSTVATPV 967
Query 971 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1030
FDGAQE EL GLL TLPNRDG+V+V+ADGKA LFDGRSGEPFPYPVTVGYMYI+KLHHL
Sbjct 968 FDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFPYPVTVGYMYILKLHHL 1027
Query 1031 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1090
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
Sbjct 1028 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1087
Query 1091 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE 1150
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDLE
Sbjct 1088 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLE 1147
Query 1151 RAAANLGINLSRNESASVEDLA 1172
RAAANLGINLSRNESASVEDLA
Sbjct 1148 RAAANLGINLSRNESASVEDLA 1169
>gi|118468129|ref|YP_885753.1| DNA-directed RNA polymerase subunit beta [Mycobacterium smegmatis
str. MC2 155]
gi|41017600|sp|P60281.1|RPOB_MYCS2 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|38174793|emb|CAE53837.1| RNA polymerase, beta subunit [Mycobacterium smegmatis]
gi|118169416|gb|ABK70312.1| DNA-directed RNA polymerase, beta subunit [Mycobacterium smegmatis
str. MC2 155]
Length=1169
Score = 2192 bits (5681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1066/1162 (92%), Positives = 1115/1162 (96%), Gaps = 0/1162 (0%)
Query 11 ASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAE 70
A S S+ + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWL+GS RWR++A +
Sbjct 8 AVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDRWRQAAID 67
Query 71 RGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVT 130
RG+ NPVGGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKA VDECKDKDMTYAAPLFVT
Sbjct 68 RGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYAAPLFVT 127
Query 131 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTD 190
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+
Sbjct 128 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTE 187
Query 191 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSE 250
KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQIVERFGFSE
Sbjct 188 KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSE 247
Query 251 IMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
IM TLEKD T GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV
Sbjct 248 IMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 307
Query 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
NKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT+MTVPGGVEVPVE DDIDHFGNR
Sbjct 308 NKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDDIDHFGNR 367
Query 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 430
RLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
Sbjct 368 RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 427
Query 431 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 490
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL
Sbjct 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 487
Query 491 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVE 550
IGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVAQANSP D +GRF E
Sbjct 488 IGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDENGRFTE 547
Query 551 PRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
Sbjct 548 DRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Query 611 PLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFA 670
PLVRSEAPLVGTGMELRAAIDAGDVVVA+++GVIEEVSADYITVM D+GTR++YR+RKFA
Sbjct 608 PLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQSYRLRKFA 667
Query 671 RSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAII 730
RSNHGTCANQ PIVDAG RVEAGQVIADGPCT +GEMALGKNLLVAIMPWEGHNYEDAII
Sbjct 668 RSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHNYEDAII 727
Query 731 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEV 790
LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEV
Sbjct 728 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 787
Query 791 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 850
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE
Sbjct 788 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 847
Query 851 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 910
D+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL DGTPVDII
Sbjct 848 DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDII 907
Query 911 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 970
LNTHGVPRRMNIGQILETHLGW A +GW +D A GVPDWA++LP+EL A ++ V+TPV
Sbjct 908 LNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPADSTVATPV 967
Query 971 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1030
FDGAQE EL GLL TLPNRDG+V+VDADGK+ LFDGRSGEPFPYPVTVGYMYI+KLHHL
Sbjct 968 FDGAQEGELAGLLGSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMYILKLHHL 1027
Query 1031 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1090
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
Sbjct 1028 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1087
Query 1091 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE 1150
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDLE
Sbjct 1088 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLE 1147
Query 1151 RAAANLGINLSRNESASVEDLA 1172
RAAANLGINLSRNESASVEDLA
Sbjct 1148 RAAANLGINLSRNESASVEDLA 1169
>gi|62720652|gb|AAX93862.1| RNA polymerase subunit B [Mycobacterium conceptionense]
Length=1170
Score = 2189 bits (5672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1068/1172 (92%), Positives = 1117/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G
Sbjct 7 LAVSSQSKSA--------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVG 58
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S WR+ A +RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 59 SDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 118
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 119 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 178
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 179 FDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 238
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 239 QITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 298
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 299 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 358
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 359 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 418
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 419 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPI 478
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQANS
Sbjct 479 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANS 538
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 539 PIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 598
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVV+E++GV+EEVSADYITVM D+G+
Sbjct 599 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGS 658
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPW
Sbjct 659 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPW 718
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 719 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 778
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 779 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 838
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 839 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 898
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A G P+WA++LP++L A
Sbjct 899 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSA 958
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGA+E EL GLL TLPNRDGDV+VD+DGKA LFDGRSGEPFPYPVTVG
Sbjct 959 PVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFPYPVTVG 1018
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMY++KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1019 YMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1078
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1079 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1138
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1139 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1170
>gi|34595749|gb|AAQ76597.1| RpoB [Mycobacterium senegalense]
Length=1170
Score = 2188 bits (5670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1067/1172 (92%), Positives = 1116/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G
Sbjct 7 LAVSSQSKSA--------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVG 58
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S WR+ A +RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 59 SDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 118
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 119 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 178
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 179 FDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 238
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 239 QITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 298
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 299 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 358
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 359 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 418
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 419 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPI 478
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQANS
Sbjct 479 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANS 538
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID DGRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 539 PIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 598
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDV+V+E++GV+EEVSADYITVM D+G+
Sbjct 599 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGS 658
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPW
Sbjct 659 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPW 718
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 719 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 778
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 779 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 838
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 839 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 898
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A G P+WA++LP++L A
Sbjct 899 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSA 958
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGA+E EL GLL TLPNRDGDV+V+ADGKA LFDGRSGEPFPYPVTVG
Sbjct 959 PVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVG 1018
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1019 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1078
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1079 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1138
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1139 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1170
>gi|34391553|gb|AAN65354.1| RpoB [Mycobacterium septicum]
Length=1185
Score = 2188 bits (5670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1162 (92%), Positives = 1113/1162 (96%), Gaps = 0/1162 (0%)
Query 11 ASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAE 70
A S S +++NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G+ WR+ A +
Sbjct 24 AVSSQSTANANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGADGWRQKAVD 83
Query 71 RGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVT 130
RG+ NP GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVT
Sbjct 84 RGETNPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVT 143
Query 131 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTD 190
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD++IDKST+
Sbjct 144 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDDSIDKSTE 203
Query 191 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSE 250
KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQIVERFGFSE
Sbjct 204 KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSE 263
Query 251 IMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
IM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV
Sbjct 264 IMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 323
Query 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
NKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE DDIDHFGNR
Sbjct 324 NKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDDIDHFGNR 383
Query 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 430
RLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
Sbjct 384 RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 443
Query 431 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 490
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGL
Sbjct 444 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGL 503
Query 491 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVE 550
IGSLSVYARVNPFGFIETPYRKVVDGVVSD+I YLTADEEDRHVVAQANSPIDADG F E
Sbjct 504 IGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVAQANSPIDADGSFTE 563
Query 551 PRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
Sbjct 564 DRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 623
Query 611 PLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFA 670
PLVRSEAPLVGTGMELRAAIDAGDV+V+E++GV+EEVSADYITVM D+G+R TYRMRKFA
Sbjct 624 PLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGSRHTYRMRKFA 683
Query 671 RSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAII 730
RSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPWEGHNYEDAII
Sbjct 684 RSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEGHNYEDAII 743
Query 731 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEV 790
LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEV
Sbjct 744 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 803
Query 791 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 850
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE
Sbjct 804 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 863
Query 851 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 910
D+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF+ DGTPVDII
Sbjct 864 DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFMPDGTPVDII 923
Query 911 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 970
LNTHGVPRRMNIGQILETHLGW A +GW +D A+G P+WA+RLPD L A ++IVSTPV
Sbjct 924 LNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLPDGLHSAPVDSIVSTPV 983
Query 971 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1030
FDGA+E EL GLL TLPNRDGDV+V+ADGKA LFDGRSGEPFPYPVTVGYMYI+KLHHL
Sbjct 984 FDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYMYILKLHHL 1043
Query 1031 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1090
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
Sbjct 1044 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1103
Query 1091 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE 1150
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDLE
Sbjct 1104 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLE 1163
Query 1151 RAAANLGINLSRNESASVEDLA 1172
RAAANLGINLSRNESASVEDLA
Sbjct 1164 RAAANLGINLSRNESASVEDLA 1185
>gi|158513166|sp|A1T4J2.2|RPOB_MYCVP RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
Length=1167
Score = 2187 bits (5668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/1154 (92%), Positives = 1111/1154 (97%), Gaps = 0/1154 (0%)
Query 19 QSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVG 78
+S++NNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SFEWLIG+ W + AA+RGDV+P G
Sbjct 14 ESTTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIGAEDWFQRAADRGDVDPKG 73
Query 79 GLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNT 138
GL+EVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVTAEFINNNT
Sbjct 74 GLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNT 133
Query 139 GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKV 198
GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE+IDKST+KTLHSVKV
Sbjct 134 GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDESIDKSTEKTLHSVKV 193
Query 199 IPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEK 258
IP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQIVERFGFSEIM STLEK
Sbjct 194 IPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMSTLEK 253
Query 259 DNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHV 318
DNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL+V
Sbjct 254 DNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLNV 313
Query 319 GEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGEL 378
G+PITSSTLTEEDVVATIEYLVRLH+G TMT PGG EVPVE DDIDHFGNRRLRTVGEL
Sbjct 314 GQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGSEVPVEVDDIDHFGNRRLRTVGEL 373
Query 379 IQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNN 438
IQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNN
Sbjct 374 IQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNN 433
Query 439 PLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYA 498
PLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGLIGSLSVYA
Sbjct 434 PLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGLIGSLSVYA 493
Query 499 RVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRK 558
RVNPFGFIETPYRKV DGVV+D+I YLTADEEDRHVVAQANSP+D DG F E RVLVRRK
Sbjct 494 RVNPFGFIETPYRKVTDGVVTDQIDYLTADEEDRHVVAQANSPLDGDGHFEEERVLVRRK 553
Query 559 AGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAP 618
GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAP
Sbjct 554 GGEVEFVSAAEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAP 613
Query 619 LVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCA 678
LVGTGMELRAAIDAGDVVV E++GV+EEVSADYITVM D+GTR TYRMRKFARSNHGTCA
Sbjct 614 LVGTGMELRAAIDAGDVVVTEKAGVVEEVSADYITVMADDGTRHTYRMRKFARSNHGTCA 673
Query 679 NQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEE 738
NQ PIVDAG RVE+GQV+ADGPCT++GEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEE
Sbjct 674 NQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEE 733
Query 739 DVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVG 798
DVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGI+RIGAEVRDGDILVG
Sbjct 734 DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIGAEVRDGDILVG 793
Query 799 KVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAG 858
KVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRED+DELPAG
Sbjct 794 KVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAG 853
Query 859 VNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPR 918
VNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL DGTPVDIILNTHGVPR
Sbjct 854 VNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPR 913
Query 919 RMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAE 978
RMNIGQILETHLGW A +GW +D A G P+WAA+LP+++L A ++IV+TPVFDGAQE E
Sbjct 914 RMNIGQILETHLGWVAKAGWNIDVAAGTPEWAAKLPEQMLSAPADSIVATPVFDGAQEGE 973
Query 979 LQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHAR 1038
LQGLL TLPNRDG+ +V+ADGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHAR
Sbjct 974 LQGLLGSTLPNRDGETMVNADGKATLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHAR 1033
Query 1039 STGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1098
STGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE
Sbjct 1034 STGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1093
Query 1099 AIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGI 1158
AIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDLERAAANLGI
Sbjct 1094 AIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLERAAANLGI 1153
Query 1159 NLSRNESASVEDLA 1172
NLSRNESASVEDLA
Sbjct 1154 NLSRNESASVEDLA 1167
>gi|120402269|ref|YP_952098.1| DNA-directed RNA polymerase subunit beta [Mycobacterium vanbaalenii
PYR-1]
gi|119955087|gb|ABM12092.1| DNA-directed RNA polymerase subunit beta [Mycobacterium vanbaalenii
PYR-1]
Length=1161
Score = 2187 bits (5668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/1154 (92%), Positives = 1111/1154 (97%), Gaps = 0/1154 (0%)
Query 19 QSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVG 78
+S++NNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SFEWLIG+ W + AA+RGDV+P G
Sbjct 8 ESTTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIGAEDWFQRAADRGDVDPKG 67
Query 79 GLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNT 138
GL+EVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVTAEFINNNT
Sbjct 68 GLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNT 127
Query 139 GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKV 198
GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE+IDKST+KTLHSVKV
Sbjct 128 GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDESIDKSTEKTLHSVKV 187
Query 199 IPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEK 258
IP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQIVERFGFSEIM STLEK
Sbjct 188 IPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMSTLEK 247
Query 259 DNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHV 318
DNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL+V
Sbjct 248 DNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLNV 307
Query 319 GEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGEL 378
G+PITSSTLTEEDVVATIEYLVRLH+G TMT PGG EVPVE DDIDHFGNRRLRTVGEL
Sbjct 308 GQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGSEVPVEVDDIDHFGNRRLRTVGEL 367
Query 379 IQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNN 438
IQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNN
Sbjct 368 IQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNN 427
Query 439 PLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYA 498
PLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGLIGSLSVYA
Sbjct 428 PLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGLIGSLSVYA 487
Query 499 RVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRK 558
RVNPFGFIETPYRKV DGVV+D+I YLTADEEDRHVVAQANSP+D DG F E RVLVRRK
Sbjct 488 RVNPFGFIETPYRKVTDGVVTDQIDYLTADEEDRHVVAQANSPLDGDGHFEEERVLVRRK 547
Query 559 AGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAP 618
GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAP
Sbjct 548 GGEVEFVSAAEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAP 607
Query 619 LVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCA 678
LVGTGMELRAAIDAGDVVV E++GV+EEVSADYITVM D+GTR TYRMRKFARSNHGTCA
Sbjct 608 LVGTGMELRAAIDAGDVVVTEKAGVVEEVSADYITVMADDGTRHTYRMRKFARSNHGTCA 667
Query 679 NQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEE 738
NQ PIVDAG RVE+GQV+ADGPCT++GEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEE
Sbjct 668 NQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEE 727
Query 739 DVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVG 798
DVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGI+RIGAEVRDGDILVG
Sbjct 728 DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIGAEVRDGDILVG 787
Query 799 KVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAG 858
KVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRED+DELPAG
Sbjct 788 KVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAG 847
Query 859 VNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPR 918
VNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL DGTPVDIILNTHGVPR
Sbjct 848 VNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPR 907
Query 919 RMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAE 978
RMNIGQILETHLGW A +GW +D A G P+WAA+LP+++L A ++IV+TPVFDGAQE E
Sbjct 908 RMNIGQILETHLGWVAKAGWNIDVAAGTPEWAAKLPEQMLSAPADSIVATPVFDGAQEGE 967
Query 979 LQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHAR 1038
LQGLL TLPNRDG+ +V+ADGKA LFDGRSGEPFPYPVTVGYMYI+KLHHLVDDKIHAR
Sbjct 968 LQGLLGSTLPNRDGETMVNADGKATLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHAR 1027
Query 1039 STGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1098
STGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE
Sbjct 1028 STGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1087
Query 1099 AIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGI 1158
AIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDLERAAANLGI
Sbjct 1088 AIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLERAAANLGI 1147
Query 1159 NLSRNESASVEDLA 1172
NLSRNESASVEDLA
Sbjct 1148 NLSRNESASVEDLA 1161
>gi|34595757|gb|AAQ76601.1| RpoB [Mycobacterium farcinogenes]
Length=1170
Score = 2187 bits (5667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1066/1172 (91%), Positives = 1116/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G
Sbjct 7 LAVSSQSKSA--------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVG 58
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S WR+ A +RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 59 SDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 118
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 119 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 178
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 179 FDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 238
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 239 QITERFGFSEIMMVTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 298
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 299 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 358
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 359 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 418
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 419 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPI 478
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQAN+
Sbjct 479 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANT 538
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID DGRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 539 PIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 598
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDV+V+E++GV+EEVSADYITVM D+G+
Sbjct 599 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGS 658
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPW
Sbjct 659 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPW 718
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 719 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 778
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 779 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 838
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 839 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 898
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A G P+WA++LP++L A
Sbjct 899 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSA 958
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGA+E EL GLL TLPNRDGDV+V+ADGKA LFDGRSGEPFPYPVTVG
Sbjct 959 PVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVG 1018
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1019 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1078
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1079 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1138
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1139 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1170
>gi|34391563|gb|AAN65359.1| RpoB [Mycobacterium fortuitum]
Length=1208
Score = 2187 bits (5667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1069/1172 (92%), Positives = 1117/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G
Sbjct 45 LAVSSQSKSA--------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVG 96
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
+ WR+ A +RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 97 ADGWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 156
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 157 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 216
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 217 FDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 276
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 277 QITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 336
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 337 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 396
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 397 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 456
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 457 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPI 516
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I YLTADEEDRHVVAQANS
Sbjct 517 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVAQANS 576
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PIDADGRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 577 PIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 636
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDV+V+E++GV+EEVSADYITVM D+G+
Sbjct 637 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGS 696
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPW
Sbjct 697 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPW 756
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 757 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 816
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 817 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 876
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 877 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 936
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A G P+WA+RLP++L A
Sbjct 937 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASRLPEQLYSA 996
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGA+E EL GLL TLPNRDGDV+V+ADGKA LFDGRSGEPFPYPVTVG
Sbjct 997 PVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVG 1056
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1057 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1116
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1117 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1176
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1177 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1208
>gi|34595747|gb|AAQ76596.1| RpoB [Mycobacterium porcinum]
Length=1169
Score = 2186 bits (5664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1063/1162 (92%), Positives = 1112/1162 (96%), Gaps = 0/1162 (0%)
Query 11 ASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAE 70
A S S +++NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+GS WR+ A +
Sbjct 8 AVSSQSTANANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGSDEWRQKAVD 67
Query 71 RGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVT 130
RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVT
Sbjct 68 RGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVT 127
Query 131 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTD 190
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE+IDKST+
Sbjct 128 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDESIDKSTE 187
Query 191 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSE 250
KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+EQI ERFGFSE
Sbjct 188 KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSE 247
Query 251 IMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
IM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV
Sbjct 248 IMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 307
Query 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
NKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE DDIDHFGNR
Sbjct 308 NKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVEVDDIDHFGNR 367
Query 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 430
RLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
Sbjct 368 RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 427
Query 431 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 490
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGL
Sbjct 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIETPEGPNIGL 487
Query 491 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVE 550
IGSLSVYARVNPFGFIETPYRKV+DGVVSD+I YLTADEEDRHVVAQANSPID DGRF E
Sbjct 488 IGSLSVYARVNPFGFIETPYRKVIDGVVSDQIDYLTADEEDRHVVAQANSPIDNDGRFTE 547
Query 551 PRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
Sbjct 548 DRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Query 611 PLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFA 670
PLVRSEAPLVGTGMELRAAIDAGDVVV+E++GV+EEVSADYITVM D+G+R TYRMRKFA
Sbjct 608 PLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGSRHTYRMRKFA 667
Query 671 RSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAII 730
RSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPWEGHNYEDAII
Sbjct 668 RSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEGHNYEDAII 727
Query 731 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEV 790
LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEV
Sbjct 728 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 787
Query 791 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 850
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE
Sbjct 788 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 847
Query 851 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 910
D+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFL DGTPVDII
Sbjct 848 DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDII 907
Query 911 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 970
LNTHGVPRRMNIGQILETHLGW A +GW +D A G P+WA++LP++L A ++IVSTPV
Sbjct 908 LNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSAPVDSIVSTPV 967
Query 971 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1030
FDGA+E EL GLL TLPNRDGDV+VD+DGKA LFDGRSGEPFPYPVTVGYMY++KLHHL
Sbjct 968 FDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFPYPVTVGYMYMLKLHHL 1027
Query 1031 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1090
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
Sbjct 1028 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1087
Query 1091 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE 1150
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDLE
Sbjct 1088 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLE 1147
Query 1151 RAAANLGINLSRNESASVEDLA 1172
RAAANLGINLSRNESASVEDLA
Sbjct 1148 RAAANLGINLSRNESASVEDLA 1169
>gi|34391549|gb|AAN65352.1| RpoB [Mycobacterium fortuitum]
Length=1170
Score = 2185 bits (5662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1172 (91%), Positives = 1116/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G
Sbjct 7 LAVSSQSKSA--------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVG 58
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
+ WR+ A +RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 59 ADEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 118
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 119 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 178
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 179 FDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 238
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 239 QITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 298
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 299 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 358
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 359 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 418
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 419 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPI 478
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQANS
Sbjct 479 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANS 538
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID DGRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 539 PIDPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 598
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDV+V+E++G++EEVSADYITVM D+G+
Sbjct 599 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITVMADDGS 658
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPW
Sbjct 659 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPW 718
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 719 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 778
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 779 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 838
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 839 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 898
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A G P+WA++LP++L A
Sbjct 899 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSA 958
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGA+E EL GLL TLPNRDGDV+V+ADGKA LFDGRSGEPFPYPVTVG
Sbjct 959 PVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVG 1018
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1019 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1078
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1079 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1138
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1139 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1170
>gi|34391565|gb|AAN65360.1| RpoB [Mycobacterium fortuitum]
Length=1177
Score = 2185 bits (5662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1172 (91%), Positives = 1116/1172 (96%), Gaps = 8/1172 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A + +NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G
Sbjct 14 LAVSSQSKSA--------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVG 65
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
S WR+ A +RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 66 SDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 125
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 126 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 185
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 186 FDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 245
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 246 QITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 305
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE
Sbjct 306 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 365
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DD+DHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 366 VDDMDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 425
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 426 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPI 485
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVAQANS
Sbjct 486 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANS 545
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
PID DGRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 546 PIDPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 605
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDV+V+E++G++EEVSADYITVM D+G+
Sbjct 606 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITVMADDGS 665
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPW
Sbjct 666 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPW 725
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 726 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 785
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 786 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 845
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 846 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 905
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW +D A G P+WA++LP++L A
Sbjct 906 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQLYSA 965
Query 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020
++IVSTPVFDGA+E EL GLL TLPNRDGDV+V+ADGKA LFDGRSGEPFPYPVTVG
Sbjct 966 PVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVG 1025
Query 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080
YMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
Sbjct 1026 YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1085
Query 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
Sbjct 1086 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1145
Query 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172
+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1146 MRDGDDEDLERAAANLGINLSRNESASVEDLA 1177
>gi|34391551|gb|AAN65353.1| RpoB [Mycobacterium peregrinum]
Length=1169
Score = 2184 bits (5658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1063/1162 (92%), Positives = 1112/1162 (96%), Gaps = 0/1162 (0%)
Query 11 ASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAE 70
A S S +++NNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+WL+G+ WR+ A +
Sbjct 8 AVSSQSTANANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFDWLVGADGWRQKAVD 67
Query 71 RGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVT 130
RG+ +P GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKDMTYAAPLFVT
Sbjct 68 RGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVT 127
Query 131 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTD 190
AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE+IDKST+
Sbjct 128 AEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDESIDKSTE 187
Query 191 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSE 250
KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI ERFGFSE
Sbjct 188 KTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSE 247
Query 251 IMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
IM TLEKD+T G DEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV
Sbjct 248 IMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 307
Query 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
NKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT+MTVPGGVEVPVE DDIDHFGNR
Sbjct 308 NKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDDIDHFGNR 367
Query 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 430
RLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
Sbjct 368 RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL 427
Query 431 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGL 490
SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPIETPEGPNIGL
Sbjct 428 SQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNIGL 487
Query 491 IGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVE 550
IGSLSVYARVNPFGFIETPYRKVVDGVVSD+I YLTADEEDRHVVAQANSPID DGRF E
Sbjct 488 IGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVAQANSPIDTDGRFTE 547
Query 551 PRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV
Sbjct 548 DRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Query 611 PLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFA 670
PLVRSEAPLVGTGMELRAAIDAGDV+V+E++GV+EEVSADYITVM D+G+R TYRMRKFA
Sbjct 608 PLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMADDGSRHTYRMRKFA 667
Query 671 RSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAII 730
RSNHGTCANQ PIVDAG RVEAGQV+ADGPCT++GEMALGKNLLVAIMPWEGHNYEDAII
Sbjct 668 RSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVAIMPWEGHNYEDAII 727
Query 731 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEV 790
LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDERGIVRIGAEV
Sbjct 728 LSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 787
Query 791 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 850
RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE
Sbjct 788 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 847
Query 851 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 910
D+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF+ DGTPVDII
Sbjct 848 DDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFMPDGTPVDII 907
Query 911 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 970
LNTHGVPRRMNIGQILETHLGW A +GW +D A+G P+WA+RLPD L A ++IVSTPV
Sbjct 908 LNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLPDGLHSAPVDSIVSTPV 967
Query 971 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1030
FDGA+E EL GLL TLPNRDGDV+V+ADGKA LFDGRSGEPFPYPVTVGYMYI+KLHHL
Sbjct 968 FDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYPVTVGYMYILKLHHL 1027
Query 1031 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1090
VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT
Sbjct 1028 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDT 1087
Query 1091 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLE 1150
VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE+R+G+DEDL+
Sbjct 1088 VGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLD 1147
Query 1151 RAAANLGINLSRNESASVEDLA 1172
RAAANLGINLSRNESASVEDLA
Sbjct 1148 RAAANLGINLSRNESASVEDLA 1169
>gi|126433605|ref|YP_001069296.1| DNA-directed RNA polymerase subunit beta [Mycobacterium sp. JLS]
gi|158513447|sp|A3PV78.1|RPOB_MYCSJ RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|126233405|gb|ABN96805.1| DNA-directed RNA polymerase subunit beta [Mycobacterium sp. JLS]
Length=1172
Score = 2182 bits (5654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1067/1174 (91%), Positives = 1116/1174 (96%), Gaps = 10/1174 (0%)
Query 1 LADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60
LA S QSK+A ++ +NNSVPGAPNR+SFAKLREPLEVPGLLDVQT+SF+WLIG
Sbjct 7 LAVSSQSKSA--------KAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFDWLIG 58
Query 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120
+ WR+ A RGDVNP GGLEEVL ELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD
Sbjct 59 ADSWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 118
Query 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
Sbjct 119 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 178
Query 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240
FDE+IDKST+KTLHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWT+E
Sbjct 179 FDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNE 238
Query 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300
QI ERFGFSEIM STLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
Sbjct 239 QITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 298
Query 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360
DLARVGRYKVNKKLGL+ +PITSSTLTEEDVVATIEYLVRLHEGQ TMTVPGGVEVPVE
Sbjct 299 DLARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHEGQATMTVPGGVEVPVE 358
Query 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420
DDIDHFGNRRLRTVGELIQNQIRVG+SRMERVVRERMTTQDVEAITPQTLINIRPVVAA
Sbjct 359 VDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 418
Query 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGRMCPI
Sbjct 419 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPI 478
Query 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVAQANS
Sbjct 479 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANS 538
Query 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600
P+D +G F E RVLVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
Sbjct 539 PLDDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 598
Query 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVV+E++GV+EEVSADYITVM D+GT
Sbjct 599 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGT 658
Query 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720
R TYRMRKFARSNHGTCANQ PIVDAG RVEAGQV+ADGPCT +GEMALGKNLLVAIMPW
Sbjct 659 RHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVAIMPW 718
Query 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE
Sbjct 719 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 778
Query 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
Sbjct 779 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 838
Query 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900
VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
Sbjct 839 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 898
Query 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVD--AAKGVPDWAARLPDELL 958
L DGTPVDIILNTHGVPRRMNIGQILETHLGW A +GW ++ A GVPDWA +LP+EL
Sbjct 899 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLPEELY 958
Query 959 EAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVT 1018
A ++IV+TPVFDGA+E EL GLL+ TLPNRDGDV+V+ DGKA LFDGRSGEPFPYPVT
Sbjct 959 SAPSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFPYPVT 1018
Query 1019 VGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYT 1078
VGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYT
Sbjct 1019 VGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYT 1078
Query 1079 LQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAA 1138
LQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAA
Sbjct 1079 LQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAA 1138
Query 1139 IELREGEDEDLERAAANLGINLSRNESASVEDLA 1172
IE+R+G+DEDLERAAANLGINLSRNESASVEDLA
Sbjct 1139 IEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1172
Lambda K H
0.316 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2981526619770
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40