BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0668 Length=1316 Score E Sequences producing significant alignments: (Bits) Value gi|15607808|ref|NP_215182.1| DNA-directed RNA polymerase subunit... 2695 0.0 gi|306966688|ref|ZP_07479349.1| DNA-directed RNA polymerase subu... 2694 0.0 gi|15840071|ref|NP_335108.1| DNA-directed RNA polymerase subunit... 2692 0.0 gi|289442065|ref|ZP_06431809.1| DNA-directed RNA polymerase, bet... 2692 0.0 gi|121636589|ref|YP_976812.1| DNA-directed RNA polymerase subuni... 2692 0.0 gi|341600605|emb|CCC63275.1| DNA-directed RNA polymerase (beta' ... 2689 0.0 gi|224989061|ref|YP_002643748.1| DNA-directed RNA polymerase sub... 2689 0.0 gi|340625687|ref|YP_004744139.1| DNA-directed RNA polymerase sub... 2687 0.0 gi|289446226|ref|ZP_06435970.1| DNA-directed RNA polymerase subu... 2672 0.0 gi|289756755|ref|ZP_06516133.1| DNA-directed RNA polymerase subu... 2659 0.0 gi|254549628|ref|ZP_05140075.1| DNA-directed RNA polymerase subu... 2645 0.0 gi|41410229|ref|NP_963065.1| DNA-directed RNA polymerase subunit... 2631 0.0 gi|326905111|gb|EGE52044.1| DNA-directed RNA polymerase subunit ... 2630 0.0 gi|118467211|ref|YP_883636.1| DNA-directed RNA polymerase subuni... 2629 0.0 gi|296168514|ref|ZP_06850330.1| DNA-directed RNA polymerase subu... 2625 0.0 gi|254776937|ref|ZP_05218453.1| DNA-directed RNA polymerase subu... 2623 0.0 gi|254822772|ref|ZP_05227773.1| DNA-directed RNA polymerase subu... 2615 0.0 gi|342858842|ref|ZP_08715496.1| DNA-directed RNA polymerase subu... 2612 0.0 gi|183981016|ref|YP_001849307.1| DNA-directed RNA polymerase, be... 2610 0.0 gi|118616533|ref|YP_904865.1| DNA-directed RNA polymerase subuni... 2605 0.0 gi|240167669|ref|ZP_04746328.1| DNA-directed RNA polymerase subu... 2603 0.0 gi|581335|emb|CAA78669.1| RNA polymerase beta' subunit [Mycobact... 2587 0.0 gi|15828009|ref|NP_302272.1| DNA-directed RNA polymerase subunit... 2586 0.0 gi|333989323|ref|YP_004521937.1| DNA-directed RNA polymerase sub... 2563 0.0 gi|298524159|ref|ZP_07011568.1| DNA-directed RNA polymerase [Myc... 2511 0.0 gi|254363618|ref|ZP_04979664.1| DNA-directed RNA polymerase (bet... 2499 0.0 gi|289573273|ref|ZP_06453500.1| DNA-directed RNA polymerase subu... 2489 0.0 gi|108797944|ref|YP_638141.1| DNA-directed RNA polymerase subuni... 2487 0.0 gi|120402270|ref|YP_952099.1| DNA-directed RNA polymerase subuni... 2481 0.0 gi|118469768|ref|YP_885754.1| DNA-directed RNA polymerase subuni... 2481 0.0 gi|289760793|ref|ZP_06520171.1| DNA-directed RNA polymerase beta... 2477 0.0 gi|289749171|ref|ZP_06508549.1| DNA-directed RNA polymerase subu... 2474 0.0 gi|289752714|ref|ZP_06512092.1| DNA-directed RNA polymerase, bet... 2459 0.0 gi|289744391|ref|ZP_06503769.1| DNA-directed RNA polymerase beta... 2457 0.0 gi|145225672|ref|YP_001136350.1| DNA-directed RNA polymerase sub... 2456 0.0 gi|169630947|ref|YP_001704596.1| DNA-directed RNA polymerase sub... 2448 0.0 gi|336441070|gb|AEI54760.1| DNA-directed RNA polymerase subunit ... 2443 0.0 gi|336441068|gb|AEI54759.1| DNA-directed RNA polymerase subunit ... 2442 0.0 gi|336441060|gb|AEI54755.1| DNA-directed RNA polymerase subunit ... 2442 0.0 gi|336441066|gb|AEI54758.1| DNA-directed RNA polymerase subunit ... 2437 0.0 gi|336441064|gb|AEI54757.1| DNA-directed RNA polymerase subunit ... 2433 0.0 gi|336441062|gb|AEI54756.1| DNA-directed RNA polymerase subunit ... 2432 0.0 gi|54027072|ref|YP_121314.1| DNA-directed RNA polymerase subunit... 2430 0.0 gi|312140999|ref|YP_004008335.1| DNA-directed RNA polymerase bet... 2401 0.0 gi|111018958|ref|YP_701930.1| DNA-directed RNA polymerase subuni... 2383 0.0 gi|226361053|ref|YP_002778831.1| DNA-directed RNA polymerase sub... 2378 0.0 gi|226305223|ref|YP_002765181.1| DNA-directed RNA polymerase bet... 2358 0.0 gi|229490582|ref|ZP_04384420.1| DNA-directed RNA polymerase, bet... 2357 0.0 gi|262201132|ref|YP_003272340.1| DNA-directed RNA polymerase sub... 2356 0.0 gi|296138487|ref|YP_003645730.1| DNA-directed RNA polymerase sub... 2345 0.0 >gi|15607808|ref|NP_215182.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium tuberculosis H37Rv] gi|31791852|ref|NP_854345.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium bovis AF2122/97] gi|148660442|ref|YP_001281965.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium tuberculosis H37Ra] 44 more sequence titles Length=1316 Score = 2695 bits (6987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1315/1316 (99%), Positives = 1316/1316 (100%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|306966688|ref|ZP_07479349.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis SUMu009] gi|308355542|gb|EFP44393.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis SUMu009] Length=1316 Score = 2694 bits (6983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1314/1316 (99%), Positives = 1315/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGK PIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKVPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|15840071|ref|NP_335108.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium tuberculosis CDC1551] gi|13880219|gb|AAK44922.1| DNA-directed RNA polymerase, beta-prime subunit [Mycobacterium tuberculosis CDC1551] gi|323720890|gb|EGB29956.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis CDC1551A] Length=1316 Score = 2692 bits (6979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1314/1316 (99%), Positives = 1315/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVP DTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPEDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|289442065|ref|ZP_06431809.1| DNA-directed RNA polymerase, beta' subunit [Mycobacterium tuberculosis T46] gi|289414984|gb|EFD12224.1| DNA-directed RNA polymerase, beta' subunit [Mycobacterium tuberculosis T46] Length=1316 Score = 2692 bits (6978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1313/1316 (99%), Positives = 1314/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELE RAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEVRAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQE TRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQEATRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|121636589|ref|YP_976812.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|160175485|sp|A1KGE8.1|RPOC_MYCBP RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|121492236|emb|CAL70703.1| DNA-directed RNA polymerase (beta' chain) rpoC [Mycobacterium bovis BCG str. Pasteur 1173P2] Length=1316 Score = 2692 bits (6977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1314/1316 (99%), Positives = 1315/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRV FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|341600605|emb|CCC63275.1| DNA-directed RNA polymerase (beta' chain) rpoC [Mycobacterium bovis BCG str. Moreau RDJ] Length=1316 Score = 2689 bits (6969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1313/1316 (99%), Positives = 1314/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRV FKGIICERCGVEV RAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVPFKGIICERCGVEVARAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|224989061|ref|YP_002643748.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium bovis BCG str. Tokyo 172] gi|254765330|sp|C1AL01.1|RPOC_MYCBT RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|224772174|dbj|BAH24980.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium bovis BCG str. Tokyo 172] Length=1316 Score = 2689 bits (6969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1313/1316 (99%), Positives = 1314/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKR FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRAPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|340625687|ref|YP_004744139.1| DNA-directed RNA polymerase subunit beta' RPOC [Mycobacterium canettii CIPT 140010059] gi|340003877|emb|CCC43008.1| DNA-directed RNA polymerase (beta' chain) RPOC (transcriptase beta' chain) (RNA polymerase beta' subunit) [Mycobacterium canettii CIPT 140010059] Length=1316 Score = 2687 bits (6965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1311/1316 (99%), Positives = 1315/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAE+LR+VIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEALREVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPG+TGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGNTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGT AVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTGAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|289446226|ref|ZP_06435970.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis CPHL_A] gi|289419184|gb|EFD16385.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis CPHL_A] Length=1316 Score = 2672 bits (6925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1307/1316 (99%), Positives = 1308/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWL TRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLFGGVVPGDTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|289756755|ref|ZP_06516133.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis T85] gi|289712319|gb|EFD76331.1| DNA-directed RNA polymerase subunit beta [Mycobacterium tuberculosis T85] Length=1316 Score = 2659 bits (6892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1300/1316 (99%), Positives = 1302/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSA S Q + RSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAISLQMSVSYADRCDDQLRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|254549628|ref|ZP_05140075.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=1316 Score = 2645 bits (6856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1296/1316 (99%), Positives = 1298/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLM + QETT VLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMASRRRRWPPTRGCRRRRSQETTCVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|41410229|ref|NP_963065.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium avium subsp. paratuberculosis K-10] gi|60390510|sp|Q73SE3.1|RPOC_MYCPA RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|41399063|gb|AAS06681.1| RpoC [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460549|gb|EGO39442.1| DNA-directed RNA polymerase, beta'' subunit, predominant form [Mycobacterium avium subsp. paratuberculosis S397] Length=1316 Score = 2631 bits (6820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1282/1316 (98%), Positives = 1295/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEM VERKAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRD GEREMRQIRDRAQRELDRLEDIW+TFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAE LRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD GEY Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYS 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIEAELFG +GWQPGD Sbjct 601 PAAKDRPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRV+FNELLP+GYPFVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER PDGTLIRDPYIETSAYARTLGTDAVDEAGNVIV RG+DLGDPEIDALLAAGIT V Sbjct 901 LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|326905111|gb|EGE52044.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis W-148] Length=1317 Score = 2630 bits (6818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1294/1321 (98%), Positives = 1298/1321 (99%), Gaps = 9/1321 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAII DLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIIKDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSW-----LSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255 AAGRPVL G + W + + TRVLTDAAINCRSDKLNGLKENVIIG Sbjct 1201 AAGRPVLYGHPRRR----PWHRLVAVGGVVPGDPTRVLTDAAINCRSDKLNGLKENVIIG 1256 Query 1256 KLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDY 1315 KLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDY Sbjct 1257 KLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDY 1316 Query 1316 R 1316 R Sbjct 1317 R 1317 >gi|118467211|ref|YP_883636.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium avium 104] gi|160175475|sp|A0QL48.1|RPOC_MYCA1 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|118168498|gb|ABK69395.1| DNA-directed RNA polymerase, beta' subunit [Mycobacterium avium 104] Length=1316 Score = 2629 bits (6814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1281/1316 (98%), Positives = 1295/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEM VERKAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRD GEREMRQIRDRAQRELDRLEDIW+TFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAE LRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD GEY+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYR 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIEAELFG +GWQPGD Sbjct 601 PAAKDTPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRV+FNELLP+GYPFVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER PDGTLIRDPYIETSAYARTLGTDAVDEAGNVIV RG+DLGDPEIDALLAAGIT V Sbjct 901 LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|296168514|ref|ZP_06850330.1| DNA-directed RNA polymerase subunit beta prime [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896692|gb|EFG76329.1| DNA-directed RNA polymerase subunit beta prime [Mycobacterium parascrofulaceum ATCC BAA-614] Length=1316 Score = 2625 bits (6805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1278/1316 (98%), Positives = 1297/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVD+EMRHNELSTLEAEM VERKAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQ+RDRAQRELDRLEDIW+TFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEA+SLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEADSLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GE+Q Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDAALGEFQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIEAELFG +GWQPGD Sbjct 601 PAAKDQPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMA+TTLGRV+FNELLP+GYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMADTTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPSDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI+VE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGILVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER PDGTLIRDPYIETSAYARTLGTDAVDEAGNV+V RG+DLGDPEIDALLAAGITQV Sbjct 901 LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVVVARGEDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRV+LEDGERFYKITIVPDDG EEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVQLEDGERFYKITIVPDDGSEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|254776937|ref|ZP_05218453.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium avium subsp. avium ATCC 25291] Length=1316 Score = 2623 bits (6799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1279/1316 (98%), Positives = 1293/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEM VERKAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRD GEREMRQIRDRAQRELDRLEDIW+TFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAE LRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD GEY+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYR 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIEAELFG +GWQPGD Sbjct 601 PAAKDTPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRV+FNELLP+GYPFVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMA VLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMAGVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER PDGTLIRDPYIETSAYARTLGTDAVDEAGNVIV RG+DLGDPEIDALLAAGIT V Sbjct 901 LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCAICYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|254822772|ref|ZP_05227773.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium intracellulare ATCC 13950] Length=1316 Score = 2615 bits (6778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1270/1316 (97%), Positives = 1293/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEM VERKA+EDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAIEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQ+RDRAQRELDRLE+IW+TFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL+DR+GEYFTGAMGAESIQKLIENFDIDAEAE LRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELIDRFGEYFTGAMGAESIQKLIENFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GE++ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDAALGEFK 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMA+DRGVLSVRAKIKVRLTQLRPP EIEAELFG +GWQPGD Sbjct 601 PAAKDEPEVGVYSSPAEAIMASDRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRV+FNELLP+GYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER PDGTLIRDPYIETSAYARTLGTDAVDEAG V+V RG+DLGDPEI+ALLAAGITQV Sbjct 901 LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGKVVVARGEDLGDPEIEALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLE+GERFYKITIVPDDG EEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEEGERFYKITIVPDDGSEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSD DHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDNDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|342858842|ref|ZP_08715496.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium colombiense CECT 3035] gi|342133083|gb|EGT86286.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium colombiense CECT 3035] Length=1316 Score = 2612 bits (6770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1266/1316 (97%), Positives = 1294/1316 (99%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVD+EMRHNELSTLEAEM VERKA+EDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMMVERKAIEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQ+RDRAQRELDRLE+IW+TFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL+DR+GEYFTGAMGAESIQKLIENFDIDAEAESLRDVI+NGKGQKKLRALKRLKVVA Sbjct 241 YRELIDRFGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIKNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTEV GD GE++ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEVDGDKGEFK 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMA+DRGVLSVRAKIKVRLTQLRPP EIEAELFG +GWQPGD Sbjct 601 PAAKDEPEVGVYSSPAEAIMASDRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRV+FNELLP+GYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI+VE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIIVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER DGT+IRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+ALLAAGIT V Sbjct 901 LAERQADGTVIRDPYIETSAYARTLGADAVDEAGNVVVPRGEDLGDPEIEALLAAGITSV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRA+FEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRADFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|183981016|ref|YP_001849307.1| DNA-directed RNA polymerase, beta chain, RpoC [Mycobacterium marinum M] gi|226699499|sp|B2HSJ4.1|RPOC_MYCMM RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|183174342|gb|ACC39452.1| DNA-directed RNA polymerase, beta chain, RpoC [Mycobacterium marinum M] Length=1316 Score = 2610 bits (6764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1273/1316 (97%), Positives = 1287/1316 (98%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE LFGH+GWQPGD Sbjct 601 PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G Sbjct 661 AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV Sbjct 901 LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|118616533|ref|YP_904865.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium ulcerans Agy99] gi|160175538|sp|A0PM25.1|RPOC_MYCUA RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|118568643|gb|ABL03394.1| DNA-directed RNA polymerase, beta chain, RpoC [Mycobacterium ulcerans Agy99] Length=1316 Score = 2605 bits (6751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1270/1316 (97%), Positives = 1285/1316 (98%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRP+VQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPLVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE ELFGH+GWQPGD Sbjct 601 PAVQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDELFGHNGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G Sbjct 661 AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 781 ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV Sbjct 901 LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFY I IVPDDGGEEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYTIAIVPDDGGEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEAR AAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARVAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|240167669|ref|ZP_04746328.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium kansasii ATCC 12478] Length=1320 Score = 2603 bits (6746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1272/1320 (97%), Positives = 1293/1320 (98%), Gaps = 4/1320 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERKAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LA+LEAEGAKADARRKVRDGGEREMRQ+RDRAQRELDRLEDIW+TFTKLAPKQLIVDENL Sbjct 181 LAQLEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYFTGAMGAESIQKLIENFDIDAEAESLR+VIR+GKGQKKLRALKRLKVVA Sbjct 241 YRELQDRYGEYFTGAMGAESIQKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPML+EGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEAR+LMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRP EIEAELFG +GW PG+ Sbjct 601 PAAADRPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPSAEIEAELFGTNGWHPGE 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRV+FNELLP GYPFVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 PWIADTTLGRVLFNELLPPGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YE+RADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDRYEDRADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPSDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVE 900 Query 901 LAERAP--DG--TLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAG 956 LAER P DG TLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEIDALLAAG Sbjct 901 LAERQPGVDGQVTLIRDPYIETSAYARTLGIDAVDEAGNVVVARGEDLGDPEIDALLAAG 960 Query 957 ITQVKVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1016 ITQVKVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH Sbjct 961 ITQVKVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1020 Query 1017 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVV 1076 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVV Sbjct 1021 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVV 1080 Query 1077 YDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1136 YDK+SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR Sbjct 1081 YDKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1140 Query 1137 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAE 1196 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAE Sbjct 1141 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAE 1200 Query 1197 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1256 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK Sbjct 1201 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1260 Query 1257 LIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 LIPAGTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 LIPAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1320 >gi|581335|emb|CAA78669.1| RNA polymerase beta' subunit [Mycobacterium leprae] Length=1316 Score = 2587 bits (6705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1258/1316 (96%), Positives = 1289/1316 (98%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LA LEAEGAKADARRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGRYR 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|15828009|ref|NP_302272.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium leprae TN] gi|221230486|ref|YP_002503902.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium leprae Br4923] gi|13432232|sp|P30761.2|RPOC_MYCLE RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|254765331|sp|B8ZSC6.1|RPOC_MYCLB RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|13093562|emb|CAC30844.1| [beta]' subunit of RNA polymerase [Mycobacterium leprae] gi|219933593|emb|CAR71986.1| [beta]' subunit of RNA polymerase [Mycobacterium leprae Br4923] Length=1316 Score = 2586 bits (6704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1258/1316 (96%), Positives = 1289/1316 (98%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VDEEMRHNELSTLEAEM VERK+VEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LA LEAEGAKADARRK RDGGEREMRQ+R+RAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKL+++FDI+AEAESLR+VIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V GDTG Y+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPP +IEA FG +GW+PGD Sbjct 601 PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W+A+TTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LA R PDG+LIR+ YIETSAYARTLG +AVDEAGNVIV RG+DLGDPEIDALLAAGITQV Sbjct 901 LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFE+ENRRVVAE GEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|333989323|ref|YP_004521937.1| DNA-directed RNA polymerase subunit beta [Mycobacterium sp. JDM601] gi|333485291|gb|AEF34683.1| DNA-directed RNA polymerase beta chain RpoC [Mycobacterium sp. JDM601] Length=1316 Score = 2563 bits (6644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1239/1316 (95%), Positives = 1277/1316 (98%), Gaps = 0/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VE+KAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDTEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKAD RRKVRDGGEREMRQ+RDRAQRELDRL++IW TF KLAPKQLIVDE + Sbjct 181 LAELEAEGAKADVRRKVRDGGEREMRQLRDRAQRELDRLDNIWDTFVKLAPKQLIVDETV 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIE FDIDAEAESLRD I+NGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+ GDTGEY Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDTGEYT 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE+GVYSSPAEAIMA DRG LSVRAKIKVRL QLRPP E+E ELFG +GW+PGD Sbjct 601 PAAKDRPESGVYSSPAEAIMAVDRGALSVRAKIKVRLDQLRPPAEVETELFGENGWRPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWM ETTLGRVMFNELLP+GYPFVNKQMHKKVQA IINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMTETTLGRVMFNELLPVGYPFVNKQMHKKVQAVIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILD YEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDSYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVGQALR+HYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 781 ATEEVGQALRDHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI+VE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGILVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAE A DG+LIRDP+IETSAYARTL DAVDE GNV++ERG DLGDP I+ALL AGI+QV Sbjct 901 LAEVAADGSLIRDPFIETSAYARTLAVDAVDEKGNVVIERGHDLGDPSIEALLGAGISQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCAT TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEAR+PRGKAPIADV GRV+LE+G++FYKITIVPDDGGEEVVYDK+ Sbjct 1021 GEDITGGLPRVQELFEARIPRGKAPIADVAGRVQLEEGDKFYKITIVPDDGGEEVVYDKL 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 KRQRLRVFKHEDGSER+L+DGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLV+EVQ+ Sbjct 1081 PKRQRLRVFKHEDGSERLLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQQ 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE ENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFETENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1260 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR Sbjct 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 >gi|298524159|ref|ZP_07011568.1| DNA-directed RNA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|298493953|gb|EFI29247.1| DNA-directed RNA polymerase [Mycobacterium tuberculosis 94_M4241A] Length=1243 Score = 2511 bits (6507), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1227/1229 (99%), Positives = 1228/1229 (99%), Gaps = 0/1229 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQET 1229 AAGRPVLMGITKASLATDSWLSAASFQE Sbjct 1201 AAGRPVLMGITKASLATDSWLSAASFQEN 1229 >gi|254363618|ref|ZP_04979664.1| DNA-directed RNA polymerase (beta chain) rpoC [Mycobacterium tuberculosis str. Haarlem] gi|134149132|gb|EBA41177.1| DNA-directed RNA polymerase (beta chain) rpoC [Mycobacterium tuberculosis str. Haarlem] Length=1289 Score = 2499 bits (6476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1243/1288 (97%), Positives = 1247/1288 (97%), Gaps = 17/1288 (1%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVP DTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPEDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDSW-----LSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255 AA RP W + TRVLTDAAINCRSDKLNGLKENVIIG Sbjct 1201 AA-RP---SGADGHHERRRWPPTRGCRRRRSRRPTRVLTDAAINCRSDKLNGLKENVIIG 1256 Query 1256 KLIPAGTGINRYRNIAVQPTEEARAAAY 1283 KLIPAGT RY QP + R AA+ Sbjct 1257 KLIPAGT---RY-----QPLPQHRGAAH 1276 >gi|289573273|ref|ZP_06453500.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis K85] gi|289537704|gb|EFD42282.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis K85] Length=1242 Score = 2489 bits (6450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1218/1219 (99%), Positives = 1219/1219 (100%), Gaps = 0/1219 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKASLATDS 1219 AAGRPVLMGITKASLATDS Sbjct 1201 AAGRPVLMGITKASLATDS 1219 >gi|108797944|ref|YP_638141.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium sp. MCS] gi|119867040|ref|YP_936992.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium sp. KMS] gi|126433606|ref|YP_001069297.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium sp. JLS] 6 more sequence titles Length=1315 Score = 2487 bits (6445), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1202/1316 (92%), Positives = 1262/1316 (96%), Gaps = 1/1316 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT V++EMRHNELSTLEAEM VE+KAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESI+KLIENFDI+AEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT + GD GEY+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLTQLRPP +EAELF +GW+PG Sbjct 601 PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELF-ENGWKPGL 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW AETTLGRVMFNELLP+ YPF+N+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K+EILD YE AD +E+++QRGALNH ERN++LV+IW++ Sbjct 720 FHWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQD 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+AL EHYP DNPIITIV SGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER PDG+LIRDP++ETSA+ARTL TDAVD GNV++ERG DLGDP ID LLAAGI V Sbjct 900 LAERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCA++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPR KAPIADV+GRV+LE+GERFYKITIVPDDGGEEVVYDK+ Sbjct 1020 GEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDKL 1079 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRV KHEDGSE VLSDGDHVEVG QLMEGSADPHEVLRVQGPREVQIHLV EVQE Sbjct 1080 SKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQE 1139 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE+ENRRVVAEGGEP Sbjct 1140 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGEP 1199 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA Sbjct 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1259 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1260 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315 >gi|120402270|ref|YP_952099.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium vanbaalenii PYR-1] gi|160175540|sp|A1T4J3.1|RPOC_MYCVP RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|119955088|gb|ABM12093.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium vanbaalenii PYR-1] Length=1317 Score = 2481 bits (6430), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1202/1318 (92%), Positives = 1256/1318 (96%), Gaps = 3/1318 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+EMRHNELSTLEAEMAVERKA+EDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMAVERKAIEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 + ELE EGAK+D +RKVRDGGEREMRQ+RDRAQRELDRLE+IW+TFTKLAPKQLIVDE L Sbjct 181 MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDELL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYF GAMGAESI+KLIENFDIDAEAESLRD I+NGKGQKKLRALKRLKVVA Sbjct 241 YRELQDRYGEYFEGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+ GDTGE+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDTGEFT 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE+GVYSSPAEAIMA DRG LSVRAKI+VRLTQLRPP EIEAE F GW GD Sbjct 601 PAAKDQPESGVYSSPAEAIMALDRGALSVRAKIRVRLTQLRPPAEIEAERF-PDGWNMGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW AETTLGRV+FNELLP GYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 660 AWTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP K+EIL+ YE AD +EKQ+QRG LN DERNEALV+IW++ Sbjct 720 FYWATRSGVTVSMADVLVPPEKQEILERYEAEADSIEKQYQRGKLNKDERNEALVKIWQD 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVGQALR HYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC+TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAE+ DGTL+RD +IETSAYARTL TDAVD GNVIVERG DLGDP IDALLAAGIT+V Sbjct 900 LAEKQADGTLVRDQHIETSAYARTLATDAVDAKGNVIVERGHDLGDPAIDALLAAGITEV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 G DI GGLPRVQELFEAR+PR +APIADV+GR+RLE+ ++FYKITIVPDDGGEEVVYD Sbjct 1020 TGGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYD 1079 Query 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 K+S+RQRL+VFKH+DGSER+L+DGDHVEVGQQL+EGSADPHEVLRVQGPREVQIHLV+EV Sbjct 1080 KLSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEV 1139 Query 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +R EFE ENRRVVAEGG Sbjct 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGG 1199 Query 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLI Sbjct 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI 1259 Query 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 PAGTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1260 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317 >gi|118469768|ref|YP_885754.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium smegmatis str. MC2 155] gi|160175509|sp|A0QS66.1|RPOC_MYCS2 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|118171055|gb|ABK71951.1| DNA-directed RNA polymerase, beta' subunit [Mycobacterium smegmatis str. MC2 155] Length=1317 Score = 2481 bits (6429), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1204/1318 (92%), Positives = 1259/1318 (96%), Gaps = 3/1318 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVD+EMRHNELSTLEAEMAVE+KAVEDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRD GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYFTGAMGAESI+KLIENFDIDAEAESLR+VIR+GKGQKKLRALKRLKVVA Sbjct 241 YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT V G TGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 A+ D PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++EA+LF +GW+PGD Sbjct 601 AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW AETTLGRVMFNELLP YPFVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP+K+EIL+ +E AD +E+++QRGALNH ERNE+LV+IW++ Sbjct 720 FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+AL E YP DNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAER PDGTLIRD ++ETSA+ARTL TDAVD GNVI+ERG DLGDP IDALLAAGIT V Sbjct 900 LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC ++TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 G DI GGLPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD Sbjct 1020 TGGADIVGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079 Query 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 K+SKRQRLRV HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV Sbjct 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139 Query 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGG Sbjct 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199 Query 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI Sbjct 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259 Query 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317 >gi|289760793|ref|ZP_06520171.1| DNA-directed RNA polymerase beta subunit rpoC [Mycobacterium tuberculosis GM 1503] gi|289708299|gb|EFD72315.1| DNA-directed RNA polymerase beta subunit rpoC [Mycobacterium tuberculosis GM 1503] Length=1243 Score = 2477 bits (6420), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1211/1213 (99%), Positives = 1212/1213 (99%), Gaps = 0/1213 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITKA 1213 AAGRPVLMGITK Sbjct 1201 AAGRPVLMGITKG 1213 >gi|289749171|ref|ZP_06508549.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis T92] gi|289689758|gb|EFD57187.1| DNA-directed RNA polymerase subunit beta rpoC [Mycobacterium tuberculosis T92] Length=1233 Score = 2474 bits (6411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1209/1212 (99%), Positives = 1210/1212 (99%), Gaps = 0/1212 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELE RAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEVRAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPVLMGITK 1212 AAGRPVL GITK Sbjct 1201 AAGRPVLTGITK 1212 >gi|289752714|ref|ZP_06512092.1| DNA-directed RNA polymerase, beta-prime subunit [Mycobacterium tuberculosis EAS054] gi|289693301|gb|EFD60730.1| DNA-directed RNA polymerase, beta-prime subunit [Mycobacterium tuberculosis EAS054] Length=1206 Score = 2459 bits (6374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1203/1206 (99%), Positives = 1204/1206 (99%), Gaps = 0/1206 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELE RAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEVRAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 ASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 LASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAGRPV 1206 AAGRPV Sbjct 1201 AAGRPV 1206 >gi|289744391|ref|ZP_06503769.1| DNA-directed RNA polymerase beta subunit rpoC [Mycobacterium tuberculosis 02_1987] gi|289684919|gb|EFD52407.1| DNA-directed RNA polymerase beta subunit rpoC [Mycobacterium tuberculosis 02_1987] Length=1233 Score = 2457 bits (6367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1202/1203 (99%), Positives = 1203/1203 (100%), Gaps = 0/1203 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL Sbjct 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD Sbjct 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE Sbjct 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF Sbjct 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE Sbjct 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV Sbjct 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI Sbjct 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE Sbjct 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP Sbjct 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 Query 1201 AAG 1203 AAG Sbjct 1201 AAG 1203 >gi|145225672|ref|YP_001136350.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium gilvum PYR-GCK] gi|315446023|ref|YP_004078902.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium sp. Spyr1] gi|189043942|sp|A4T1P3.1|RPOC_MYCGI RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|145218158|gb|ABP47562.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium gilvum PYR-GCK] gi|315264326|gb|ADU01068.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium sp. Spyr1] Length=1316 Score = 2456 bits (6366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1192/1318 (91%), Positives = 1250/1318 (95%), Gaps = 4/1318 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+EMRHNELSTLEAEM VE+KA+EDQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVEKKAIEDQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 + ELE EGAK+D RRKVRDGGEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 MKELEEEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDELL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYF GAMGAESI+KLIE FDIDAEA+SLRD I+NGKGQKKLRALKRLKVVA Sbjct 241 YRELQDRYGEYFEGAMGAESIKKLIETFDIDAEADSLRDTIKNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVI+EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+ GD GE+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDKGEFT 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE+GVYSSPAEAIMA DRG LSVRAKI+VRLTQLRPP EIEAE F GW GD Sbjct 601 PAAKDQPESGVYSSPAEAIMAMDRGALSVRAKIRVRLTQLRPPAEIEAERF-PDGWNMGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW AETTLGRV+FNELLP GYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG Sbjct 660 AWTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP K+EIL+ YE AD +EKQ+QRG L+ ERNEALV+IW++ Sbjct 720 FYWATRSGVTVSMADVLVPPEKQEILERYEAAADSIEKQYQRGKLDKGERNEALVKIWQD 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVGQALR HYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC+TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAE D L+RD +IETSAYARTL TDAVD GNV+VERG DLGDP IDALLAAGIT+V Sbjct 900 LAELQGD-QLLRDQHIETSAYARTLATDAVDANGNVVVERGHDLGDPAIDALLAAGITEV 958 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCAT TGVCA CYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 959 KVRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1018 Query 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 G DI GGLPRVQELFEAR+PR +APIADV+GR+RLE+ ++FYKITIVPDDGGEEVVYD Sbjct 1019 TGGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYD 1078 Query 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 K+S+RQRL+VFKH+DGSER+L+DGDHVEVGQQL+EGSADPHEVLRVQGPREVQIHLV+EV Sbjct 1079 KLSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEV 1138 Query 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +R EFE ENRRVVAEGG Sbjct 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGG 1198 Query 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLI Sbjct 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI 1258 Query 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 PAGTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR Sbjct 1259 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316 >gi|169630947|ref|YP_001704596.1| DNA-directed RNA polymerase subunit beta' [Mycobacterium abscessus ATCC 19977] gi|226699498|sp|B1MH61.1|RPOC_MYCA9 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|169242914|emb|CAM63942.1| DNA-directed RNA polymerase beta' chain [Mycobacterium abscessus] Length=1319 Score = 2448 bits (6345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1185/1320 (90%), Positives = 1251/1320 (95%), Gaps = 5/1320 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDR+QRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAE++QKLI+NFD+DAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+PGD G + Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA D PE GVYSSPAEAIMA DRG LSVRA I+VRLTQ RPP E+EAELF +GWQPGD Sbjct 601 PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELF-ENGWQPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW+AETTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN ER +ALV+IW+E Sbjct 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL EHYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVV 899 Query 901 LAER--APDG--TLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAG 956 +AE+ PDG TLIRD +IETSAYARTL DAVD GNV+VERG DLGDP I+ LLAAG Sbjct 900 IAEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAG 959 Query 957 ITQVKVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1016 +T VKVRSVLTC T TGVCA CYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFH Sbjct 960 VTTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFH 1019 Query 1017 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVV 1076 QGGVG+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITIVPDDGGEEVV Sbjct 1020 QGGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVV 1079 Query 1077 YDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1136 YDK+SKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV Sbjct 1080 YDKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVN 1139 Query 1137 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAE 1196 EVQEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE+ENRRVVAE Sbjct 1140 EVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAE 1199 Query 1197 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1256 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK Sbjct 1200 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1259 Query 1257 LIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316 LIPAGTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG+ TGAAVPLDDYGYSDYR Sbjct 1260 LIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYSDYR 1319 >gi|336441070|gb|AEI54760.1| DNA-directed RNA polymerase subunit beta [Mycobacterium massiliense] Length=1316 Score = 2443 bits (6331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1183/1317 (90%), Positives = 1248/1317 (95%), Gaps = 5/1317 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VDEE+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITTVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDR+QRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAE++QKLI+NFD+DAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+PGD G + Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA D PE GVYSSPAEAIMA DRG LSVRA I+VRLTQ RPP E+EAELF +GWQPGD Sbjct 601 PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELF-ENGWQPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW+AETTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN ER +ALV+IW+E Sbjct 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL EHYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVV 899 Query 901 LAER--APDG--TLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAG 956 +AE+ PDG TLIRD +IETSAYARTL DAVD GNV+VERG DLGDP I+ LLAAG Sbjct 900 IAEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAG 959 Query 957 ITQVKVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1016 +T VKVRSVLTC T TGVCA CYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFH Sbjct 960 VTTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFH 1019 Query 1017 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVV 1076 QGGVG+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITIVPDDGGEEVV Sbjct 1020 QGGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVV 1079 Query 1077 YDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1136 YDK+SKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV Sbjct 1080 YDKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVN 1139 Query 1137 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAE 1196 EVQEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE+ENRRVVAE Sbjct 1140 EVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAE 1199 Query 1197 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1256 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK Sbjct 1200 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1259 Query 1257 LIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYS 1313 LIPAGTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG+ TGAAVPLDDYGYS Sbjct 1260 LIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYS 1316 >gi|336441068|gb|AEI54759.1| DNA-directed RNA polymerase subunit beta [Mycobacterium immunogenum] Length=1312 Score = 2442 bits (6330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1179/1313 (90%), Positives = 1246/1313 (95%), Gaps = 1/1313 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVD+E+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDR+QRELDRL++IW+TFTKLA KQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLATKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAE++QKLI+ FD+DAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAEAVQKLIQTFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+PGDTG + Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDTGAHV 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMA DRG LSVRA I+VRLTQ RPP E+EAELF +GWQPGD Sbjct 601 PAAKDQPEEGVYSSPAEAIMAMDRGALSVRAPIRVRLTQPRPPAEVEAELF-ENGWQPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW+AETTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN ER +ALV+IW+E Sbjct 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL EHYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ DGTLIRD +IETSAYARTL DAVD GNV+VERG DLGDP I+ LLAAG+T V Sbjct 900 IAEKQADGTLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAGVTTV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCA CYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 G+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITIVPDDGGEEVVYDK+ Sbjct 1020 GDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVVYDKL 1079 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV EVQE Sbjct 1080 SKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVNEVQE 1139 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +R EFE+ENRRVVAEGGEP Sbjct 1140 VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFESENRRVVAEGGEP 1199 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSD+LNGLKENVIIGKLIPA Sbjct 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDRLNGLKENVIIGKLIPA 1259 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYS 1313 GTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG+ TGAAVPLDDYGYS Sbjct 1260 GTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYS 1312 >gi|336441060|gb|AEI54755.1| DNA-directed RNA polymerase subunit beta [Mycobacterium abscessus] Length=1316 Score = 2442 bits (6328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1182/1317 (90%), Positives = 1248/1317 (95%), Gaps = 5/1317 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDR+QRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAE++QKLI+NFD+DAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+PGD G + Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA D PE GVYSSPAEAIMA DRG LSVRA I+VRLTQ RPP E+EAELF +GWQPGD Sbjct 601 PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELF-ENGWQPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW+AETTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN ER +ALV+IW+E Sbjct 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL EHYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVV 899 Query 901 LAER--APDG--TLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAG 956 +AE+ PDG TLIRD +IETSAYARTL DAVD GNV+VERG DLGDP I+ LLAAG Sbjct 900 IAEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAG 959 Query 957 ITQVKVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1016 +T VKVRSVLTC T TGVCA CYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFH Sbjct 960 VTTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFH 1019 Query 1017 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVV 1076 QGGVG+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITIVPDDGGEEVV Sbjct 1020 QGGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVV 1079 Query 1077 YDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1136 YDK+SKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV Sbjct 1080 YDKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVN 1139 Query 1137 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAE 1196 EVQEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE+ENRRVVAE Sbjct 1140 EVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAE 1199 Query 1197 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1256 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK Sbjct 1200 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1259 Query 1257 LIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYS 1313 LIPAGTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG+ TGAAVPLDDYGYS Sbjct 1260 LIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYS 1316 >gi|336441066|gb|AEI54758.1| DNA-directed RNA polymerase subunit beta [Mycobacterium chelonae] Length=1312 Score = 2437 bits (6315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1176/1313 (90%), Positives = 1245/1313 (95%), Gaps = 1/1313 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDR+QRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAE++QKLI+ FD+DAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAEAVQKLIQTFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLL+GKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLEGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAV LPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTEVPGDTG + Sbjct 541 MAVPLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEVPGDTGAHA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PETGVYSSPAEAIMA DRG LSVRA I+VRLTQ RPP E+EAELF +GWQPGD Sbjct 601 PAAKDQPETGVYSSPAEAIMALDRGALSVRAPIRVRLTQQRPPAEVEAELF-ENGWQPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW+AETTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN+ ER +ALV+IW+E Sbjct 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNNQERRDALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL EHYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ DGTLIRD +IETSAYARTL DAVD GNV+VERG DLGDP I+ LLAAG+T V Sbjct 900 IAEKQDDGTLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAGVTTV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCA CYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 G+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITI+PDDGGEEVVYDK+ Sbjct 1020 GDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIIPDDGGEEVVYDKL 1079 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV EVQE Sbjct 1080 SKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVNEVQE 1139 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +R EFE NRRVVAEG EP Sbjct 1140 VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETANRRVVAEGNEP 1199 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSD+LNGLKENVIIGKLIPA Sbjct 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDRLNGLKENVIIGKLIPA 1259 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYS 1313 GTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG+ TGAAVPLDDYGYS Sbjct 1260 GTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYS 1312 >gi|336441064|gb|AEI54757.1| DNA-directed RNA polymerase subunit beta [Mycobacterium bolletii] Length=1314 Score = 2433 bits (6306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1179/1315 (90%), Positives = 1245/1315 (95%), Gaps = 5/1315 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDR+QRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAE++QKLI+NFD+DAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFD GRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDTGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+PGD G + Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA D PE GVYSSPAEAIMA DRG LSVRA I+VRLTQ RPP E+EAELF +GWQPGD Sbjct 601 PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELF-ENGWQPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW+AETTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN ER +ALV+IW+E Sbjct 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL EHYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVV 899 Query 901 LAER--APDG--TLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAG 956 +AE+ PDG TLIRD +IETSAYARTL DAVD GNV+VERG DLGDP I+ LLAAG Sbjct 900 IAEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAG 959 Query 957 ITQVKVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1016 +T VKVRSVLTC T TGVCA CYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFH Sbjct 960 VTTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFH 1019 Query 1017 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVV 1076 QGGVG+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITIVPDDGGEEVV Sbjct 1020 QGGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVV 1079 Query 1077 YDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1136 YDK+SKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV Sbjct 1080 YDKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVN 1139 Query 1137 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAE 1196 EVQEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE+ENRRVVAE Sbjct 1140 EVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAE 1199 Query 1197 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1256 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK Sbjct 1200 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1259 Query 1257 LIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYG 1311 LIPAGTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG+ TGAAVPLDDYG Sbjct 1260 LIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYG 1314 >gi|336441062|gb|AEI54756.1| DNA-directed RNA polymerase subunit beta [Mycobacterium franklinii] Length=1316 Score = 2432 bits (6304), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1175/1317 (90%), Positives = 1244/1317 (95%), Gaps = 5/1317 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKVRDGGEREMRQ+RDR+QRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRE+VDRYGEYFTGAMGAE++QKLI+ FD+DAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YREIVDRYGEYFTGAMGAEAVQKLIQTFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+PGDTG + Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDTGAHA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEAIMA DRG LSVRA I+VRLT RPPVE+EAELF +GWQPGD Sbjct 601 PAAKDQPEVGVYSSPAEAIMALDRGALSVRAPIRVRLTHQRPPVEVEAELF-ENGWQPGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW+AETTLGRV+FNELLP GYPFVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKDAG Sbjct 660 AWIAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 F+WATRSGVTVSMADVLVPP+K EILD YE+ A+++EKQ+QRGALN ER +ALV+IW+E Sbjct 720 FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+AL EHYP DNPI + SGATGN TQ R LAGMKGLVTNPKGE+IPRP+KSSF Sbjct 780 ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ DGTLIRD +IETSAYARTL DAVD GNV+VERG DLGDP I+ LLAAG+T V Sbjct 900 IAEKQDDGTLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAGVTTV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCA CYGRSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 G+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITI+PDDGGEEVVYDK+ Sbjct 1020 GDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIIPDDGGEEVVYDKL 1079 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV EVQE Sbjct 1080 SKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVNEVQE 1139 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +R EFE NRRVVAEG EP Sbjct 1140 VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETANRRVVAEGNEP 1199 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTD----AAINCRSDKLNGLKENVIIGK 1256 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTD AAINCRSD+LNGLKENVIIGK Sbjct 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINAAINCRSDRLNGLKENVIIGK 1259 Query 1257 LIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYS 1313 LIPAGTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG+ TGAAVPLDDYGYS Sbjct 1260 LIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYS 1316 >gi|54027072|ref|YP_121314.1| DNA-directed RNA polymerase subunit beta' [Nocardia farcinica IFM 10152] gi|81602390|sp|Q5YPE1.1|RPOC_NOCFA RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|54018580|dbj|BAD59950.1| putative RNA polymerase beta' subunit [Nocardia farcinica IFM 10152] Length=1317 Score = 2430 bits (6298), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1179/1318 (90%), Positives = 1248/1318 (95%), Gaps = 3/1318 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVITSVDEE+RHNELSTLEAEM VE+KAV DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVITSVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAK+D RRKV+DGGEREMRQIRDRAQRELDRL++IW+TFTKLAPKQLIVDE L Sbjct 181 LAELEAEGAKSDVRRKVKDGGEREMRQIRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYFTGAMGAESIQKL+ENFDIDAEAESLR+ IR GKGQKKLRALKRLKVVA Sbjct 241 YRELTDRYGEYFTGAMGAESIQKLMENFDIDAEAESLRETIRTGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ +GNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQANGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT G GEY+ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYR 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D PE GVYSSPAEA MA DRG L+VR+KIKVRLT RPP ++EAELF GWQ GD Sbjct 601 PATADAPEFGVYSSPAEAQMAVDRGELTVRSKIKVRLTDQRPPKDVEAELFPE-GWQRGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW ETTLGRV+FNELLP YPF+N+ M KK QA IINDLAERYPMIVVAQTVDKLKDAG Sbjct 660 AWTTETTLGRVLFNELLPADYPFINEPMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSM+DVLVPP K EI++ YE ++D++EK++QRGAL+H ERN ALV+IW+E Sbjct 720 FYWATRSGVTVSMSDVLVPPEKAEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG+ALR HYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGIVV Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVP 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ PDG++IRDP++ETS YARTL DAVD GNVIV +G DLGDP ++ALL AGIT+V Sbjct 900 IAEKQPDGSIIRDPHVETSTYARTLAADAVDANGNVIVAKGADLGDPALEALLEAGITEV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIA+V+GRVRLED +RFYKITI+PDDGGEEVVYDK Sbjct 1020 AGDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDK 1079 Query 1080 ISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +SKRQRLRVFKH+DG+ER+LSDGDHVEVGQQL+EG+ADPHEVLRV GPR+VQ+HLV EVQ Sbjct 1080 LSKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQ 1139 Query 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL +RAEFEA NRRVVAEGGE Sbjct 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAANRRVVAEGGE 1199 Query 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PA+GRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct 1200 PASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGAATGAAVPLDDYGYSDYR 1316 AGTGINRYRNI VQPTEEARAAAY +PSY+D YYSPD FG++TGAAVPLDDYG+SDYR Sbjct 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGSSTGAAVPLDDYGFSDYR 1317 >gi|312140999|ref|YP_004008335.1| DNA-directed RNA polymerase beta subunit rpoc [Rhodococcus equi 103S] gi|325675364|ref|ZP_08155048.1| DNA-directed RNA polymerase subunit beta prime [Rhodococcus equi ATCC 33707] gi|311890338|emb|CBH49656.1| DNA-directed RNA polymerase beta subunit RpoC [Rhodococcus equi 103S] gi|325553335|gb|EGD23013.1| DNA-directed RNA polymerase subunit beta prime [Rhodococcus equi ATCC 33707] Length=1319 Score = 2401 bits (6222), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1162/1320 (89%), Positives = 1236/1320 (94%), Gaps = 5/1320 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLATAEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K V DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMEVEKKTVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 +AELEAEGAK+D RRKV+DGGEREMRQ+RDRAQRELDRL++IW+TFTKL+ KQLIVDE+L Sbjct 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDESL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKL+ENFDI+AEAESLR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLMENFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGL++LT EV G G YQ Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTREVEGAIGAYQ 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ PE GVYSSPAEA MA DRGVLSV+AKIKVRLT RPP EIEAELF GW GD Sbjct 601 PAADGQPEQGVYSSPAEAQMAVDRGVLSVQAKIKVRLTHQRPPREIEAELF-PEGWNFGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 WM ETTLGRVMFN+LLP YPF+N+QM KK QA IINDLAERYPMIVVAQTVDK+KD G Sbjct 660 GWMVETTLGRVMFNDLLPADYPFINEQMPKKRQATIINDLAERYPMIVVAQTVDKMKDTG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K +I++ +E +AD++EK++QRGALNH ERN ALV+IW E Sbjct 720 FYWATRSGVTVSISDVLVPPEKAQIMEQFEAQADQIEKKYQRGALNHTERNSALVKIWSE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+A+ H+PDDNPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+ Sbjct 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGILTT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+A DGT+IRD ++ETS YARTL DA+DE GNV+VERG DLGDP IDALLAAGITQV Sbjct 900 IAEKAADGTMIRDAHVETSTYARTLAADAIDENGNVVVERGHDLGDPAIDALLAAGITQV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T+TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG Sbjct 960 KVRSVLTCTTATGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGA 1019 Query 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078 DITGGLPRVQELFEARVP+GKAPI +V+GRV+L+D +RFYKIT+VPDDGGEEVVYD Sbjct 1020 AGAADITGGLPRVQELFEARVPKGKAPITEVSGRVQLDDDDRFYKITVVPDDGGEEVVYD 1079 Query 1079 KISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138 K+SKRQRLRVFKH+DGSER+LSDGDHV+VGQQL+EG+ADPH+VLRV GPR+VQIHLV EV Sbjct 1080 KLSKRQRLRVFKHDDGSERLLSDGDHVDVGQQLLEGAADPHDVLRVMGPRQVQIHLVNEV 1139 Query 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGG 1198 QEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSL++RAEFEA NRRVVAEGG Sbjct 1140 QEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERAEFEASNRRVVAEGG 1199 Query 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLI Sbjct 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLI 1259 Query 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGAATGAAVPLDDYGY-SDYR 1316 PAGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSP+ FG TGAAVPLDDYG+ SDYR Sbjct 1260 PAGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPEGFGTGTGAAVPLDDYGFGSDYR 1319 >gi|111018958|ref|YP_701930.1| DNA-directed RNA polymerase subunit beta' [Rhodococcus jostii RHA1] gi|123340763|sp|Q0SFB4.1|RPOC_RHOSR RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|110818488|gb|ABG93772.1| DNA-directed RNA polymerase beta' subunit [Rhodococcus jostii RHA1] Length=1318 Score = 2383 bits (6177), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1161/1319 (89%), Positives = 1230/1319 (94%), Gaps = 4/1319 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K+V DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKSVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 +AELEAEGAK+D RRKV+DGGEREMRQ+RDRAQRELDRL++IW+TFTKL+ KQLIVDE L Sbjct 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKL+ENFDIDAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLMENFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQTNQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT G GE Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGAIGELA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 ++ D E GVYSSPAEA MA DRG L V+AKIKVRLTQ RPP +IE+ELF GW GD Sbjct 601 ASTSDEAEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIESELF-PEGWNYGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W AETTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKDAG Sbjct 660 GWTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K +I++ +E +AD++EK++QRGALN ERN ALV+IW E Sbjct 720 FYWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+A+ H+PDDNPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ DGTLIRD ++ETS YARTL DAVDE GNVIVERG DLGDP IDALL AGITQV Sbjct 900 IAEKQADGTLIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADV+GRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query 1080 ISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +SKRQRLRVFKH+DG+ER+L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RA+FEA NRRVVAEGGE Sbjct 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199 Query 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGAATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FG TGAAVPLDDYG+S DYR Sbjct 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318 >gi|226361053|ref|YP_002778831.1| DNA-directed RNA polymerase subunit beta' [Rhodococcus opacus B4] gi|254765332|sp|C1AYV8.1|RPOC_RHOOB RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|226239538|dbj|BAH49886.1| DNA-directed RNA polymerase beta' subunit [Rhodococcus opacus B4] Length=1318 Score = 2378 bits (6164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1159/1319 (88%), Positives = 1230/1319 (94%), Gaps = 4/1319 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K V DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 +AELEAEGAK+D RRKV+DGGEREMRQ+RDRAQRELDRL++IW+TFTKL+ KQLIVDE L Sbjct 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQKL+E+FDIDAEAE+LR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQKLMESFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQANQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT G TGE Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGATGELA 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 ++ + E GVYSSPAEA MA DRG L V+AKIKVRLTQ RPP +IEAELF GW GD Sbjct 601 ASTNEESEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIEAELF-PEGWNYGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W AETTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKDAG Sbjct 660 GWTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K +I++ +E +AD++EK++QRGALN ERN ALV+IW E Sbjct 720 FYWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+A+ H+PDDNPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ DG++IRD ++ETS YARTL DAVDE GNVIVERG DLGDP IDALL AGITQV Sbjct 900 IAEKQADGSMIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADV+GRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query 1080 ISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +SKRQRLRVFKH+DG+ER+L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RA+FEA NRRVVAEGGE Sbjct 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199 Query 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGAATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FG TGAAVPLDDYG+S DYR Sbjct 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGRNTGAAVPLDDYGFSNDYR 1318 >gi|226305223|ref|YP_002765181.1| DNA-directed RNA polymerase beta' chain [Rhodococcus erythropolis PR4] gi|259494202|sp|C0ZVQ7.1|RPOC_RHOE4 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gi|226184338|dbj|BAH32442.1| DNA-directed RNA polymerase beta' chain [Rhodococcus erythropolis PR4] Length=1318 Score = 2358 bits (6110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1150/1319 (88%), Positives = 1220/1319 (93%), Gaps = 4/1319 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K V DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 +AELEAEGAK+D RRKV+DGGEREMRQ+RDRAQRELDRL++IW+TFTKL+ KQLI+DE L Sbjct 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQ L++NFD+DAEAESLR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGL++LT G TGE Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 + D E GVYSSPAEA MA DRG LSV+A+IKVRLTQ RPP ++E ELF GW+ GD Sbjct 601 APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELF-PEGWKYGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A TTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G Sbjct 660 GWTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K I++ +E +ADK+EKQ+QRGAL+ ERN ALV IW+E Sbjct 720 FYWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATD+VG+A+ H+PD NPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ DGT+IRD ++ETS YARTL DAVD G VIVERG DLGDP IDALL AGIT V Sbjct 900 IAEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADVTGRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query 1080 ISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +SKRQRLRVFKH DG E +L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE+ NRRVVAEGGE Sbjct 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199 Query 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGAATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FG TGAAVPLDDYG+S DYR Sbjct 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318 >gi|229490582|ref|ZP_04384420.1| DNA-directed RNA polymerase, beta' subunit [Rhodococcus erythropolis SK121] gi|229322402|gb|EEN88185.1| DNA-directed RNA polymerase, beta' subunit [Rhodococcus erythropolis SK121] Length=1318 Score = 2357 bits (6109), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1150/1319 (88%), Positives = 1219/1319 (93%), Gaps = 4/1319 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVI VDEE+RHNELSTLEAEM VE+K V DQRD +LEARAQKLEAD Sbjct 121 APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 +AELEAEGAK+D RRKV+DGGEREMRQ+RDRAQRELDRL++IW+TFTKL+ KQLI+DE L Sbjct 181 IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YRELVDRYGEYFTGAMGAESIQ L++NFD+DAEAESLR+ IR+GKGQKKLRALKRLKVVA Sbjct 241 YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGL++LT G TGE Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 + D E GVYSSPAEA MA DRG LSV+A+IKVRLTQ RPP ++E ELF GW GD Sbjct 601 APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELF-PEGWNYGD 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A TTLGRV+FNELLP YPFVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G Sbjct 660 GWTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVS++DVLVPP K I++ +E +ADK+EKQ+QRGAL+ ERN ALV IW+E Sbjct 720 FYWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQE 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATD+VG+A+ H+PD NPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGIV Sbjct 840 KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AE+ DGT+IRD ++ETS YARTL DAVD G VIVERG DLGDP IDALL AGIT V Sbjct 900 IAEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079 G+DITGGLPRVQELFEARVP+GKAPIADVTGRV+LEDG+RFYKITIVPDDGGEEVVYDK Sbjct 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079 Query 1080 ISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139 +SKRQRLRVFKH DG E +L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ Sbjct 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139 Query 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGE 1199 EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFE+ NRRVVAEGGE Sbjct 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199 Query 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP Sbjct 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259 Query 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGAATGAAVPLDDYGYS-DYR 1316 AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FG TGAAVPLDDYG+S DYR Sbjct 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318 >gi|262201132|ref|YP_003272340.1| DNA-directed RNA polymerase subunit beta' [Gordonia bronchialis DSM 43247] gi|262084479|gb|ACY20447.1| DNA-directed RNA polymerase, beta' subunit [Gordonia bronchialis DSM 43247] Length=1318 Score = 2356 bits (6106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1149/1319 (88%), Positives = 1218/1319 (93%), Gaps = 4/1319 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDEL+IGLATA+DI WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVT+AKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRD +L R QKLE D Sbjct 121 APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDVDLNERQQKLEQD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LAELEAEGAKAD RRKV+DG EREMR++RD AQRELD L+++W FTKLAP+ LI+DE L Sbjct 181 LAELEAEGAKADVRRKVKDGAEREMRRMRDSAQRELDALDELWDKFTKLAPRDLIIDEKL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 Y +LV+RYGEYFTG+MGAE+I+KL+E FDIDAEA+SLRD IRNGKGQKKLRALKRLKVVA Sbjct 241 YHQLVERYGEYFTGSMGAEAIKKLLETFDIDAEADSLRDTIRNGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLN AQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 P VWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT G GEY Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLTEGAVGEYT 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 PA+ D E GVYSSPAEAIMA DRG L+V+++IKVRLT RPP EIEAELF GW G Sbjct 601 PATADDVERGVYSSPAEAIMAVDRGALTVQSRIKVRLTDQRPPAEIEAELF-PEGWSFGQ 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 W A+TTLGRV+FNELLP+ YP+VN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G Sbjct 660 PWDADTTLGRVLFNELLPVEYPYVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSMADVLVPP+K EILD YEERAD +E++FQRGAL DER +ALVEIWK+ Sbjct 720 FYWATRSGVTVSMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDALVEIWKQ 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 AT+EVG A+ HYPDDNPI IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTV EYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI Sbjct 840 REGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGITTT 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 +AER PDGTLIRD ++ETS YARTL TDA+D GNVIVERG DLGDP I+ALLAAGITQV Sbjct 900 IAERQPDGTLIRDAHVETSTYARTLATDALDADGNVIVERGHDLGDPAIEALLAAGITQV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTCAT TGVCA CYGRSMATGKLVDIGEAVGI+AAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 G+DITGGLPRVQELFEARVP+G APIA+V+GRVRLED +RFYKITIVPDDG EEVV DKI Sbjct 1020 GDDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITIVPDDGSEEVVIDKI 1079 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH+DGSER+LSDGDHVEVGQQLMEGSA+PHEVLRV GPR+VQ+HLV EVQE Sbjct 1080 SKRQRLRVFKHDDGSERLLSDGDHVEVGQQLMEGSANPHEVLRVMGPRQVQVHLVNEVQE 1139 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYR+QGVSIHDKHIE IVRQMLRRVTIID GSTEFLPGSL++RAEFEA NR+VVAEGGEP Sbjct 1140 VYRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRQVVAEGGEP 1199 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIPA Sbjct 1200 AAGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPA 1259 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD--FGAATGAAVPLDDYGYS-DYR 1316 GTGINRYRNI VQPTEEARAAAY +PSY+D YYSPD FGA GAAVPLDDYG+S DYR Sbjct 1260 GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR 1318 >gi|296138487|ref|YP_003645730.1| DNA-directed RNA polymerase subunit beta' [Tsukamurella paurometabola DSM 20162] gi|296026621|gb|ADG77391.1| DNA-directed RNA polymerase, beta' subunit [Tsukamurella paurometabola DSM 20162] Length=1318 Score = 2345 bits (6078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1142/1319 (87%), Positives = 1216/1319 (93%), Gaps = 4/1319 (0%) Query 1 VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 +LDVNFFDEL+IGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC Sbjct 1 MLDVNFFDELKIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60 Query 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL Sbjct 61 YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120 Query 121 APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180 APKDLEKIIYFAAYVIT VDEE RHNE STLEAE+ E+K + DQRD +LE RA+KLE D Sbjct 121 APKDLEKIIYFAAYVITEVDEEQRHNEQSTLEAEIESEKKVLADQRDVDLENRAKKLEDD 180 Query 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240 LA LEAEGAKAD RRKV+DGGEREMRQIRDRAQR +D L++IW+TF KLAPK +IVDE L Sbjct 181 LAVLEAEGAKADQRRKVKDGGEREMRQIRDRAQRAIDELDEIWTTFVKLAPKDMIVDEKL 240 Query 241 YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300 YREL DRYGEYF GAMGAE+I+KLIENFDIDAEAE LR+VIR+GKGQKKLRALKRLKVVA Sbjct 241 YRELQDRYGEYFKGAMGAEAIKKLIENFDIDAEAEILREVIRSGKGQKKLRALKRLKVVA 300 Query 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 AFQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL Sbjct 301 AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360 Query 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK Sbjct 361 GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420 Query 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR Sbjct 421 RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480 Query 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ Sbjct 481 PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540 Query 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE G Y Sbjct 541 MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTTEKADAQGAYT 600 Query 601 PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660 A D PETGVYSSPAEAIMA D G LS++A IKVRLT RPP EIEAE F W+ G Sbjct 601 AAKKDQPETGVYSSPAEAIMAVDLGELSIQAPIKVRLTNQRPPAEIEAEQF-DGAWERGQ 659 Query 661 AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720 AW AETTLGRV+FNELLP+ YPFV++QM KK QA IINDLAERYPMIVVAQTVDKLKD+G Sbjct 660 AWTAETTLGRVLFNELLPIDYPFVDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDSG 719 Query 721 FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780 FYWATRSGVTVSM+DVLVPP KKEILD YEERAD +E+++ RGAL ER +ALVEIWK+ Sbjct 720 FYWATRSGVTVSMSDVLVPPSKKEILDRYEERADGIERKYARGALTSGERRDALVEIWKQ 779 Query 781 ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840 ATDEVG+A+ ++YP+DNPI I SGATGN TQ R LAGMKGLVTNPKGEFIPRP+KSSF Sbjct 780 ATDEVGKAIDDYYPEDNPITMIPKSGATGNMTQVRNLAGMKGLVTNPKGEFIPRPIKSSF 839 Query 841 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC T RGI+V Sbjct 840 REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCNTTRGIIVP 899 Query 901 LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960 LAE DG+LIRD ++ETSAYARTL DA D GNVIVERG DLGDP+I+ALL AGI +V Sbjct 900 LAEVQADGSLIRDAHVETSAYARTLAEDAKDAKGNVIVERGHDLGDPQIEALLEAGIAEV 959 Query 961 KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020 KVRSVLTC T TGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV Sbjct 960 KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019 Query 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080 G+DITGGLPRV ELFEARVP+GKAPIA+V+GR+RLED +RFY ITI PDDG EEVVYDKI Sbjct 1020 GDDITGGLPRVTELFEARVPKGKAPIAEVSGRIRLEDDDRFYTITITPDDGSEEVVYDKI 1079 Query 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140 SKRQRLRVFKH+DG+ER+L+DGDHV+VGQQL+EG+ADPHEVLRV GPR+VQ+HLV EVQE Sbjct 1080 SKRQRLRVFKHDDGTERLLADGDHVQVGQQLLEGAADPHEVLRVMGPRQVQVHLVNEVQE 1139 Query 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200 VYR+QGVSIHDKHIE IVRQMLRRVTIIDSGSTEFLPGSL +RAEFEAENRRVVAEGGEP Sbjct 1140 VYRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGEP 1199 Query 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIPA Sbjct 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINTRSDKLVGLKENVIIGKLIPA 1259 Query 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD--FGAATGAAVPLDDYGYSD-YR 1316 GTGIN+YRNI VQPTEEARAAAY++P+++DQYY P+ FGA +GAAVPLDDYG+SD YR Sbjct 1260 GTGINKYRNIQVQPTEEARAAAYSVPTFDDQYYGPEGAFGAPSGAAVPLDDYGFSDGYR 1318 Lambda K H 0.318 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3381388632528 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40