BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0670

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607810|ref|NP_215184.1|  endonuclease IV [Mycobacterium tube...   506    1e-141
gi|340625689|ref|YP_004744141.1|  putative endonuclease IV [Mycob...   500    1e-139
gi|183981020|ref|YP_001849311.1|  endonuclease IV (apurinase) [My...   439    2e-121
gi|118616535|ref|YP_904867.1|  endonuclease IV [Mycobacterium ulc...   437    6e-121
gi|15828008|ref|NP_302271.1|  endonuclease IV [Mycobacterium lepr...   422    2e-116
gi|118466381|ref|YP_883635.1|  endonuclease IV [Mycobacterium avi...   421    6e-116
gi|315446021|ref|YP_004078900.1|  endonuclease IV [Mycobacterium ...   417    8e-115
gi|296168515|ref|ZP_06850331.1|  family 2 AP endonuclease [Mycoba...   417    1e-114
gi|145225669|ref|YP_001136347.1|  endonuclease IV [Mycobacterium ...   417    1e-114
gi|120402272|ref|YP_952101.1|  endonuclease IV [Mycobacterium van...   416    1e-114
gi|342858841|ref|ZP_08715495.1|  endonuclease IV [Mycobacterium c...   416    2e-114
gi|333989325|ref|YP_004521939.1|  endonuclease IV (apurinase) [My...   414    7e-114
gi|254822771|ref|ZP_05227772.1|  endonuclease IV [Mycobacterium i...   413    1e-113
gi|108797946|ref|YP_638143.1|  endonuclease IV [Mycobacterium sp....   410    9e-113
gi|41410230|ref|NP_963066.1|  endonuclease IV [Mycobacterium aviu...   404    8e-111
gi|118468437|ref|YP_885769.1|  endonuclease IV [Mycobacterium sme...   403    1e-110
gi|254776936|ref|ZP_05218452.1|  endonuclease IV [Mycobacterium a...   402    4e-110
gi|240167670|ref|ZP_04746329.1|  endonuclease IV [Mycobacterium k...   401    5e-110
gi|253797612|ref|YP_003030613.1|  endonuclease IV end [Mycobacter...   392    2e-107
gi|289552926|ref|ZP_06442136.1|  LOW QUALITY PROTEIN: endonucleas...   392    3e-107
gi|289760796|ref|ZP_06520174.1|  endonuclease IV [Mycobacterium t...   367    6e-100
gi|269129135|ref|YP_003302505.1|  xylose isomerase domain-contain...   305    3e-81 
gi|256381015|ref|YP_003104675.1|  endonuclease IV [Actinosynnema ...   301    5e-80 
gi|134103773|ref|YP_001109434.1|  endonuclease IV [Saccharopolysp...   300    1e-79 
gi|271970525|ref|YP_003344721.1|  apurinic endonuclease Apn1 [Str...   295    5e-78 
gi|238061880|ref|ZP_04606589.1|  endonuclease IV [Micromonospora ...   294    7e-78 
gi|331700358|ref|YP_004336597.1|  Deoxyribonuclease IV [Pseudonoc...   292    3e-77 
gi|302531294|ref|ZP_07283636.1|  endonuclease IV [Streptomyces sp...   288    4e-76 
gi|333922183|ref|YP_004495764.1|  putative endonuclease IV [Amyco...   287    9e-76 
gi|340532790|gb|AEK47995.1|  deoxyribonuclease IV [Amycolatopsis ...   285    5e-75 
gi|300791091|ref|YP_003771382.1|  deoxyribonuclease IV [Amycolato...   285    5e-75 
gi|256389569|ref|YP_003111133.1|  endonuclease IV [Catenulispora ...   284    1e-74 
gi|326329089|ref|ZP_08195418.1|  AP endonuclease, family 2 [Nocar...   283    1e-74 
gi|324998549|ref|ZP_08119661.1|  endonuclease IV [Pseudonocardia ...   282    4e-74 
gi|296271512|ref|YP_003654144.1|  apurinic endonuclease Apn1 [The...   281    4e-74 
gi|284034860|ref|YP_003384791.1|  xylose isomerase domain-contain...   281    6e-74 
gi|302870700|ref|YP_003839337.1|  Xylose isomerase domain-contain...   281    7e-74 
gi|336322166|ref|YP_004602134.1|  xylose isomerase domain-contain...   281    8e-74 
gi|84498623|ref|ZP_00997386.1|  endonuclease IV [Janibacter sp. H...   280    1e-73 
gi|23007412|ref|ZP_00049293.1|  COG0648: Endonuclease IV [Magneto...   279    4e-73 
gi|336120941|ref|YP_004575727.1|  putative endonuclease IV [Micro...   278    7e-73 
gi|229821166|ref|YP_002882692.1|  endonuclease IV [Beutenbergia c...   278    8e-73 
gi|296138173|ref|YP_003645416.1|  xylose isomerase [Tsukamurella ...   275    4e-72 
gi|257057873|ref|YP_003135705.1|  Endonuclease IV [Saccharomonosp...   275    6e-72 
gi|291303844|ref|YP_003515122.1|  apurinic endonuclease Apn1 [Sta...   273    1e-71 
gi|317126547|ref|YP_004100659.1|  endonuclease IV [Intrasporangiu...   273    2e-71 
gi|145597066|ref|YP_001161363.1|  endonuclease IV [Salinispora tr...   273    3e-71 
gi|330470803|ref|YP_004408546.1|  endonuclease IV [Verrucosispora...   271    6e-71 
gi|269958062|ref|YP_003327851.1|  xylose isomerase domain-contain...   270    2e-70 
gi|334338341|ref|YP_004543493.1|  Deoxyribonuclease IV (phage-T(4...   269    2e-70 


>gi|15607810|ref|NP_215184.1| endonuclease IV [Mycobacterium tuberculosis H37Rv]
 gi|15840073|ref|NP_335110.1| endonuclease IV [Mycobacterium tuberculosis CDC1551]
 gi|31791854|ref|NP_854347.1| endonuclease IV [Mycobacterium bovis AF2122/97]
 69 more sequence titles
 Length=252

 Score =  506 bits (1304),  Expect = 1e-141, Method: Compositional matrix adjust.
 Identities = 251/252 (99%), Positives = 252/252 (100%), Gaps = 0/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL
Sbjct  1    MLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL
Sbjct  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI
Sbjct  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK
Sbjct  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240

Query  241  DDIAFLRERTGS  252
            DDIAFLRERTGS
Sbjct  241  DDIAFLRERTGS  252


>gi|340625689|ref|YP_004744141.1| putative endonuclease IV [Mycobacterium canettii CIPT 140010059]
 gi|340003879|emb|CCC43010.1| putative endonuclease IV END (endodeoxyribonuclease IV) (apurinase) 
[Mycobacterium canettii CIPT 140010059]
Length=252

 Score =  500 bits (1287),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 247/252 (99%), Positives = 250/252 (99%), Gaps = 0/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHVSPTDPLAAA+AEGADVVQIFLGNPQSWKAPKPRDDAAALKAA LPIYVHAPYL
Sbjct  1    MLIGSHVSPTDPLAAADAEGADVVQIFLGNPQSWKAPKPRDDAAALKAANLPIYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL
Sbjct  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEAL DAVDRI
Sbjct  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALVDAVDRI  180

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KAITGRIDLVHCNDS+DEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK
Sbjct  181  KAITGRIDLVHCNDSKDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240

Query  241  DDIAFLRERTGS  252
            DDIAFLRERTGS
Sbjct  241  DDIAFLRERTGS  252


>gi|183981020|ref|YP_001849311.1| endonuclease IV (apurinase) [Mycobacterium marinum M]
 gi|229634903|sp|B2HSJ8.1|END4_MYCMM RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease 
IV; AltName: Full=Endonuclease IV
 gi|183174346|gb|ACC39456.1| endonuclease IV (apurinase) [Mycobacterium marinum M]
Length=252

 Score =  439 bits (1128),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 218/252 (87%), Positives = 238/252 (95%), Gaps = 0/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHVSP DPLAAA+AEGA+VVQIFLGNPQSWKAPKPR+DAA LKAA LPIYVHAPYL
Sbjct  1    MLIGSHVSPQDPLAAAQAEGAEVVQIFLGNPQSWKAPKPREDAAQLKAAALPIYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            INLASANN+VRIPSRKILQ+TC AAADIGAAAVIVHGGHVADDND+D+GFQRWRKALD+L
Sbjct  61   INLASANNKVRIPSRKILQQTCDAAADIGAAAVIVHGGHVADDNDLDEGFQRWRKALDQL  120

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+VPVYLENTAGG+HAMAR FDTIARLWDVIGDTGIGFCLDTCH WAAGE L   VDRI
Sbjct  121  QTDVPVYLENTAGGEHAMARHFDTIARLWDVIGDTGIGFCLDTCHAWAAGEQLVHGVDRI  180

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KA+TGRIDLVHCNDSRD AGSGRDRHANLG+GQIDP+LLVAAV+AA AP+ICETA++GRK
Sbjct  181  KAVTGRIDLVHCNDSRDAAGSGRDRHANLGAGQIDPELLVAAVRAADAPIICETAEEGRK  240

Query  241  DDIAFLRERTGS  252
            DDIAFLRE+  S
Sbjct  241  DDIAFLREKLNS  252


>gi|118616535|ref|YP_904867.1| endonuclease IV [Mycobacterium ulcerans Agy99]
 gi|166224288|sp|A0PM27.1|END4_MYCUA RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease 
IV; AltName: Full=Endonuclease IV
 gi|118568645|gb|ABL03396.1| endonuclease iv (apurinase), End [Mycobacterium ulcerans Agy99]
Length=252

 Score =  437 bits (1125),  Expect = 6e-121, Method: Compositional matrix adjust.
 Identities = 217/252 (87%), Positives = 238/252 (95%), Gaps = 0/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHVSP DPLAAA+AEGA+VVQIFLGNPQSWKAP+PR+DAA LKAA LPIYVHAPYL
Sbjct  1    MLIGSHVSPQDPLAAAQAEGAEVVQIFLGNPQSWKAPRPREDAAQLKAAALPIYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            INLASANN+VRIPSRKILQ+TC AAADIGAAAVIVHGGHVADDND+D+GFQRWRKALD+L
Sbjct  61   INLASANNKVRIPSRKILQQTCDAAADIGAAAVIVHGGHVADDNDLDEGFQRWRKALDQL  120

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+VPVYLENTAGG+HAMAR FDTIARLWDVIGDTGIGFCLDTCH WAAGE L   VDRI
Sbjct  121  QTDVPVYLENTAGGEHAMARHFDTIARLWDVIGDTGIGFCLDTCHAWAAGEQLVHGVDRI  180

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KA+TGRIDLVHCNDSRD AGSGRDRHANLG+GQIDP+LLVAAV+AA AP+ICETA++GRK
Sbjct  181  KAVTGRIDLVHCNDSRDAAGSGRDRHANLGAGQIDPELLVAAVRAADAPIICETAEEGRK  240

Query  241  DDIAFLRERTGS  252
            DDIAFLRE+  S
Sbjct  241  DDIAFLREKLNS  252


>gi|15828008|ref|NP_302271.1| endonuclease IV [Mycobacterium leprae TN]
 gi|221230485|ref|YP_002503901.1| endonuclease IV [Mycobacterium leprae Br4923]
 gi|399426|sp|P30770.1|END4_MYCLE RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease 
IV; AltName: Full=Endonuclease IV
 gi|254783113|sp|B8ZSC5.1|END4_MYCLB RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease 
IV; AltName: Full=Endonuclease IV
 gi|581336|emb|CAA78670.1| endonuclease [Mycobacterium leprae]
 gi|13093561|emb|CAC30843.1| putataive endonuclease IV (apurinase) [Mycobacterium leprae]
 gi|219933592|emb|CAR71985.1| putataive endonuclease IV (apurinase) [Mycobacterium leprae Br4923]
Length=252

 Score =  422 bits (1085),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 214/250 (86%), Positives = 232/250 (93%), Gaps = 0/250 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHVS TDPLAAAE EGADVVQIFLGNPQSWKAP  R DA  LKA  LP+YVHAPYL
Sbjct  1    MLIGSHVSSTDPLAAAEVEGADVVQIFLGNPQSWKAPTLRSDADVLKATALPVYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASAN+RVRIPSRKILQ+TC AAADIGAAAV+VHGG+VADDND++ GFQRWRKALD+L
Sbjct  61   INVASANSRVRIPSRKILQQTCDAAADIGAAAVVVHGGYVADDNDLEDGFQRWRKALDQL  120

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+VPVYLENTAGGDHAMARRFDTIARLWDVIG+TGIGFCLDTCH WAAGE L   VDRI
Sbjct  121  QTDVPVYLENTAGGDHAMARRFDTIARLWDVIGETGIGFCLDTCHAWAAGEGLIHVVDRI  180

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KAITGRIDLVHCNDS+DEAGSGRDRHANLGSGQID +LLVAAVK AGAPVICETA++GRK
Sbjct  181  KAITGRIDLVHCNDSKDEAGSGRDRHANLGSGQIDAELLVAAVKVAGAPVICETAEEGRK  240

Query  241  DDIAFLRERT  250
            DDIAFLRE+T
Sbjct  241  DDIAFLREKT  250


>gi|118466381|ref|YP_883635.1| endonuclease IV [Mycobacterium avium 104]
 gi|118167668|gb|ABK68565.1| endonuclease IV [Mycobacterium avium 104]
Length=325

 Score =  421 bits (1082),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 206/252 (82%), Positives = 223/252 (89%), Gaps = 1/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            VLIGSHV   DPLAAA+A+GADVVQ FL NPQSWK P+PRDDA ALKA+++P+YVHAPYL
Sbjct  75   VLIGSHVRNDDPLAAAQADGADVVQFFLSNPQSWKKPQPRDDAEALKASSVPLYVHAPYL  134

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AAA+I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct  135  INVASANNRVRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDNDMEAGFERWVKALDYL  193

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ET+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct  194  ETDVQVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEALIDAVDRI  253

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLV  VKAA APVICETAD+GRK
Sbjct  254  KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVTVVKAAAAPVICETADEGRK  313

Query  241  DDIAFLRERTGS  252
            DDIAFLRE T S
Sbjct  314  DDIAFLREHTKS  325


>gi|315446021|ref|YP_004078900.1| endonuclease IV [Mycobacterium sp. Spyr1]
 gi|315264324|gb|ADU01066.1| Endonuclease IV [Mycobacterium sp. Spyr1]
Length=250

 Score =  417 bits (1072),  Expect = 8e-115, Method: Compositional matrix adjust.
 Identities = 206/250 (83%), Positives = 220/250 (88%), Gaps = 1/250 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAAEA+GADVVQ FLGNPQSWK P PRDDA  LKAA++PIYVHAPYL
Sbjct  1    MLIGSHVHGDDPLAAAEADGADVVQFFLGNPQSWKKPPPRDDADVLKAASMPIYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AA+DIGA AVIVHGGH ADDND+D GF+RW KAL  L
Sbjct  61   INVASANNRVRIPSRKILQDTCDAASDIGATAVIVHGGH-ADDNDMDAGFERWVKALASL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+VPVYLENTAGGDHAMAR FDTIARLWD IGD GIGFCLDTCH WAAGEAL DAV+RI
Sbjct  120  KTDVPVYLENTAGGDHAMARHFDTIARLWDHIGDMGIGFCLDTCHAWAAGEALIDAVERI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            K ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LLVA V AAGAPVICET+D GRK
Sbjct  180  KGITGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPQLLVAVVTAAGAPVICETSDDGRK  239

Query  241  DDIAFLRERT  250
            DDIAFLRE  
Sbjct  240  DDIAFLREHV  249


>gi|296168515|ref|ZP_06850331.1| family 2 AP endonuclease [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295896693|gb|EFG76330.1| family 2 AP endonuclease [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=251

 Score =  417 bits (1071),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 203/250 (82%), Positives = 221/250 (89%), Gaps = 1/250 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAAEA+GADVVQ FLGNPQSWK PKPRDDA  LKA+ +P+YVHAPYL
Sbjct  1    MLIGSHVRNDDPLAAAEADGADVVQFFLGNPQSWKKPKPRDDAEVLKASAVPLYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNR+RIPSRKILQ+TC AAA I A AVIVHGGH ADDND++ GF RW KALD L
Sbjct  61   INVASANNRIRIPSRKILQDTCDAAAQINATAVIVHGGH-ADDNDMEAGFGRWVKALDYL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+VPVYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGE L DAVDRI
Sbjct  120  DTDVPVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEELVDAVDRI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            +A+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDP+LL A VKAAGAPVICETAD+GRK
Sbjct  180  RALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPELLAAVVKAAGAPVICETADEGRK  239

Query  241  DDIAFLRERT  250
            DDIAFLRE+T
Sbjct  240  DDIAFLREKT  249


>gi|145225669|ref|YP_001136347.1| endonuclease IV [Mycobacterium gilvum PYR-GCK]
 gi|145218155|gb|ABP47559.1| Endonuclease IV [Mycobacterium gilvum PYR-GCK]
Length=250

 Score =  417 bits (1071),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 205/250 (82%), Positives = 221/250 (89%), Gaps = 1/250 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAAEA+GADVVQ FLGNPQSWK P PRDDA  LKAA++PIYVHAPYL
Sbjct  1    MLIGSHVHGDDPLAAAEADGADVVQFFLGNPQSWKKPPPRDDADVLKAASMPIYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AA++IGA AVIVHGGH ADDND+D GF+RW KAL  L
Sbjct  61   INVASANNRVRIPSRKILQDTCDAASEIGATAVIVHGGH-ADDNDMDAGFERWVKALASL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+VPVYLENTAGGDHAMAR FDTIARLWD IGD GIGFCLDTCH WAAGEAL DAV+RI
Sbjct  120  KTDVPVYLENTAGGDHAMARHFDTIARLWDHIGDMGIGFCLDTCHAWAAGEALVDAVERI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            K ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LLVA V AAGAPVICET+D+GRK
Sbjct  180  KGITGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPQLLVAVVTAAGAPVICETSDEGRK  239

Query  241  DDIAFLRERT  250
            DDIAFLRE  
Sbjct  240  DDIAFLREHV  249


>gi|120402272|ref|YP_952101.1| endonuclease IV [Mycobacterium vanbaalenii PYR-1]
 gi|119955090|gb|ABM12095.1| Endonuclease IV [Mycobacterium vanbaalenii PYR-1]
Length=259

 Score =  416 bits (1070),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 205/248 (83%), Positives = 222/248 (90%), Gaps = 1/248 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            VLIGSHV   DPLAAAEA+GADVVQ FLGNPQSWK P PR+DA  LKA+ +PIYVHAPYL
Sbjct  11   VLIGSHVHGDDPLAAAEADGADVVQFFLGNPQSWKKPPPREDAEVLKASPVPIYVHAPYL  70

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AA++IGA AVIVHGGH ADDND+D GF+RW KAL  L
Sbjct  71   INVASANNRVRIPSRKILQDTCDAASEIGATAVIVHGGH-ADDNDMDAGFERWVKALASL  129

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +++VPVYLENTAGGDHAMAR FDTIARLWD IGDTGIGFCLDTCH WAAGEAL DAV+RI
Sbjct  130  KSDVPVYLENTAGGDHAMARHFDTIARLWDHIGDTGIGFCLDTCHAWAAGEALIDAVERI  189

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            K ITGRIDLVHCNDSRD AGSG DRHAN GSGQIDP LLVA VKAAGAPVICET+D+GRK
Sbjct  190  KGITGRIDLVHCNDSRDAAGSGADRHANFGSGQIDPQLLVAVVKAAGAPVICETSDEGRK  249

Query  241  DDIAFLRE  248
            DDIAFLR+
Sbjct  250  DDIAFLRD  257


>gi|342858841|ref|ZP_08715495.1| endonuclease IV [Mycobacterium colombiense CECT 3035]
 gi|342133082|gb|EGT86285.1| endonuclease IV [Mycobacterium colombiense CECT 3035]
Length=251

 Score =  416 bits (1069),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 202/250 (81%), Positives = 224/250 (90%), Gaps = 1/250 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAA+A+GADVVQ FLGNPQSWK PKPRDDA ALKA+ +P+Y+HAPYL
Sbjct  1    MLIGSHVRNDDPLAAAQADGADVVQFFLGNPQSWKKPKPRDDAEALKASAVPLYIHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNR+RIPSRKILQ+TC AAA+I A AVIVHGGH ADD+D++ GF+RW KALD L
Sbjct  61   INVASANNRIRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDDDMEAGFERWVKALDYL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ET+VPVYLENTAGGDHAMAR FDTI +LWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct  120  ETDVPVYLENTAGGDHAMARYFDTIGKLWDHIGDKGIGFCLDTCHAWAAGEALIDAVDRI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            +A+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLVA V+AA APVICETAD+GRK
Sbjct  180  RALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVAVVEAADAPVICETADEGRK  239

Query  241  DDIAFLRERT  250
            DDIAFLRE T
Sbjct  240  DDIAFLREHT  249


>gi|333989325|ref|YP_004521939.1| endonuclease IV (apurinase) [Mycobacterium sp. JDM601]
 gi|333485293|gb|AEF34685.1| endonuclease IV (apurinase) [Mycobacterium sp. JDM601]
Length=252

 Score =  414 bits (1064),  Expect = 7e-114, Method: Compositional matrix adjust.
 Identities = 212/252 (85%), Positives = 229/252 (91%), Gaps = 1/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV P +PLAAAEAEGAD VQIFLGNPQSWKAPKPR+DAA L+ A LPIYVHAPYL
Sbjct  1    MLIGSHVRPQNPLAAAEAEGADAVQIFLGNPQSWKAPKPREDAAQLREAALPIYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHV-ADDNDIDKGFQRWRKALDR  119
            IN+AS NNRVRIPSRK+LQ+TC AAADIGA AVIVHGGHV ADD+D   GF RWRKALD+
Sbjct  61   INVASPNNRVRIPSRKVLQQTCDAAADIGAVAVIVHGGHVTADDDDPLAGFVRWRKALDQ  120

Query  120  LETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDR  179
            LET VPVYLENTAGGDHAMARRFDTIA LWD IGDTG+GFCLDTCHTWAAGE+L DAV+R
Sbjct  121  LETTVPVYLENTAGGDHAMARRFDTIATLWDHIGDTGVGFCLDTCHTWAAGESLPDAVER  180

Query  180  IKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGR  239
            IKAITGRIDLVHCNDS+D AGSGRDRHAN G+GQIDPDLLVA V+AAGAPVICETA++GR
Sbjct  181  IKAITGRIDLVHCNDSKDAAGSGRDRHANFGTGQIDPDLLVAVVQAAGAPVICETAEEGR  240

Query  240  KDDIAFLRERTG  251
            K DIAFLRER G
Sbjct  241  KADIAFLRERLG  252


>gi|254822771|ref|ZP_05227772.1| endonuclease IV [Mycobacterium intracellulare ATCC 13950]
Length=251

 Score =  413 bits (1062),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 207/251 (83%), Positives = 224/251 (90%), Gaps = 1/251 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAA+A+GADVVQ FLGNPQSWK PKPRDDA ALKA+T+P+Y+HAPYL
Sbjct  1    MLIGSHVHQDDPLAAAQADGADVVQFFLGNPQSWKKPKPRDDAEALKASTIPLYIHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AAA I A AVIVHGGH ADDND+D GF+RW KALD L
Sbjct  61   INVASANNRVRIPSRKILQDTCDAAAAISATAVIVHGGH-ADDNDMDAGFERWVKALDYL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ET+VPVYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGE L DAVDRI
Sbjct  120  ETDVPVYLENTAGGDHAMARHFDTIGRLWDHIGDKGIGFCLDTCHAWAAGEQLIDAVDRI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDP+LL A VKAA APVICETAD+GRK
Sbjct  180  KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPELLAAVVKAADAPVICETADEGRK  239

Query  241  DDIAFLRERTG  251
            DDIAFLRE+TG
Sbjct  240  DDIAFLREKTG  250


>gi|108797946|ref|YP_638143.1| endonuclease IV [Mycobacterium sp. MCS]
 gi|119867042|ref|YP_936994.1| endonuclease IV [Mycobacterium sp. KMS]
 gi|126433608|ref|YP_001069299.1| endonuclease IV [Mycobacterium sp. JLS]
 gi|108768365|gb|ABG07087.1| Endonuclease IV [Mycobacterium sp. MCS]
 gi|119693131|gb|ABL90204.1| Endonuclease IV [Mycobacterium sp. KMS]
 gi|126233408|gb|ABN96808.1| Endonuclease IV [Mycobacterium sp. JLS]
Length=268

 Score =  410 bits (1054),  Expect = 9e-113, Method: Compositional matrix adjust.
 Identities = 201/248 (82%), Positives = 219/248 (89%), Gaps = 1/248 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            VLIGSHV   DPLAAAEA+GADVVQ FLG+PQSWK PKPR+DA  LKA+++P+YVHAPYL
Sbjct  20   VLIGSHVRNDDPLAAAEADGADVVQFFLGDPQSWKKPKPREDAEVLKASSIPLYVHAPYL  79

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AAA++GA AVIVHGGH ADD D++ GF+RW KALDRL
Sbjct  80   INVASANNRVRIPSRKILQDTCDAAAEVGATAVIVHGGH-ADDKDMEAGFERWVKALDRL  138

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ET VPVYLENTAGG+HAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAV RI
Sbjct  139  ETTVPVYLENTAGGEHAMARYFDTIGRLWDHIGDYGIGFCLDTCHAWAAGEALVDAVSRI  198

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            K ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LLVA V+AA APVICET+D GRK
Sbjct  199  KRITGRIDLVHCNDSRDAAGSGADRHANFGNGQIDPQLLVAVVQAADAPVICETSDDGRK  258

Query  241  DDIAFLRE  248
            DDIAFLRE
Sbjct  259  DDIAFLRE  266


>gi|41410230|ref|NP_963066.1| endonuclease IV [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399064|gb|AAS06682.1| End [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336460548|gb|EGO39441.1| endonuclease IV [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=251

 Score =  404 bits (1037),  Expect = 8e-111, Method: Compositional matrix adjust.
 Identities = 205/252 (82%), Positives = 222/252 (89%), Gaps = 1/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAA+A+GAD VQ FL NPQSWK PKPRDDA ALKA+++P+YVHAPYL
Sbjct  1    MLIGSHVRNDDPLAAAQADGADAVQFFLSNPQSWKKPKPRDDAEALKASSVPLYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AAA+I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct  61   INVASANNRVRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDNDMEAGFERWVKALDYL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ET+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct  120  ETDVQVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEALIDAVDRI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLV  VKAA APVICETAD+GRK
Sbjct  180  KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVTVVKAAAAPVICETADEGRK  239

Query  241  DDIAFLRERTGS  252
            DDIAFLRE T S
Sbjct  240  DDIAFLREHTKS  251


>gi|118468437|ref|YP_885769.1| endonuclease IV [Mycobacterium smegmatis str. MC2 155]
 gi|118169724|gb|ABK70620.1| endonuclease IV [Mycobacterium smegmatis str. MC2 155]
Length=250

 Score =  403 bits (1036),  Expect = 1e-110, Method: Compositional matrix adjust.
 Identities = 205/251 (82%), Positives = 222/251 (89%), Gaps = 1/251 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV  TDPLAAA A+GADVVQ FLGNPQSWK PKPR+DA  LKA+T+P+YVHAPYL
Sbjct  1    MLIGSHVDNTDPLAAAAADGADVVQFFLGNPQSWKKPKPREDAEVLKASTIPLYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AAA+IGA AVIVHGGH ADDND++ GF RW KALD L
Sbjct  61   INVASANNRVRIPSRKILQDTCDAAAEIGATAVIVHGGH-ADDNDMEAGFTRWVKALDAL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+VPVYLENTAGGDHAMAR FDTIARLWD IGD GIGFCLDTCH WAAGEAL DAV+RI
Sbjct  120  DTDVPVYLENTAGGDHAMARHFDTIARLWDHIGDKGIGFCLDTCHAWAAGEALIDAVERI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            K+ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LL A VKAA APVICETA+ GRK
Sbjct  180  KSITGRIDLVHCNDSRDAAGSGADRHANFGAGQIDPQLLAAVVKAADAPVICETAEAGRK  239

Query  241  DDIAFLRERTG  251
            DDIAFLRE  G
Sbjct  240  DDIAFLREHAG  250


>gi|254776936|ref|ZP_05218452.1| endonuclease IV [Mycobacterium avium subsp. avium ATCC 25291]
Length=251

 Score =  402 bits (1032),  Expect = 4e-110, Method: Compositional matrix adjust.
 Identities = 204/252 (81%), Positives = 222/252 (89%), Gaps = 1/252 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAA+A+GAD VQ FL NPQSWK P+PRDDA ALKA+++P+YVHAPYL
Sbjct  1    MLIGSHVRNDDPLAAAQADGADAVQFFLSNPQSWKKPQPRDDAEALKASSVPLYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNRVRIPSRKILQ+TC AAA+I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct  61   INVASANNRVRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDNDMEAGFERWVKALDYL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            ET+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct  120  ETDVQVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEALIDAVDRI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLV  VKAA APVICETAD+GRK
Sbjct  180  KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVTVVKAADAPVICETADEGRK  239

Query  241  DDIAFLRERTGS  252
            DDIAFLRE T S
Sbjct  240  DDIAFLREHTKS  251


>gi|240167670|ref|ZP_04746329.1| endonuclease IV [Mycobacterium kansasii ATCC 12478]
Length=251

 Score =  401 bits (1030),  Expect = 5e-110, Method: Compositional matrix adjust.
 Identities = 201/250 (81%), Positives = 221/250 (89%), Gaps = 1/250 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIGSHV   DPLAAA+A+GADVVQ FLGNPQSWK PKPRDDA  LKA+T+P+YVHAPYL
Sbjct  1    MLIGSHVHSDDPLAAAQADGADVVQFFLGNPQSWKKPKPRDDAETLKASTIPLYVHAPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+ASANNR+RIPSRKILQ+TC AAA I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct  61   INVASANNRIRIPSRKILQDTCDAAAAINATAVIVHGGH-ADDNDMEAGFERWLKALDYL  119

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
            +T+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGE L DAVDRI
Sbjct  120  QTDVQVYLENTAGGDHAMARYFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEQLIDAVDRI  179

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            KA+TGRIDLVHCNDSRD AGSG DRHAN+G+G+IDPD LVA VKAA APVICETAD+GRK
Sbjct  180  KALTGRIDLVHCNDSRDAAGSGADRHANIGNGRIDPDHLVAVVKAADAPVICETADEGRK  239

Query  241  DDIAFLRERT  250
            DDIAFLRE+ 
Sbjct  240  DDIAFLREKV  249


>gi|253797612|ref|YP_003030613.1| endonuclease IV end [Mycobacterium tuberculosis KZN 1435]
 gi|253319115|gb|ACT23718.1| endonuclease IV end [Mycobacterium tuberculosis KZN 1435]
 gi|344218495|gb|AEM99125.1| endonuclease IV end [Mycobacterium tuberculosis CTRI-2]
Length=219

 Score =  392 bits (1008),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 196/202 (98%), Positives = 198/202 (99%), Gaps = 1/202 (0%)

Query  52   PIYVHA-PYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF  110
            P ++ A  YLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF
Sbjct  18   PAHLRACAYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF  77

Query  111  QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG  170
            QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG
Sbjct  78   QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG  137

Query  171  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  230
            EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV
Sbjct  138  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  197

Query  231  ICETADQGRKDDIAFLRERTGS  252
            ICETADQGRKDDIAFLRERTGS
Sbjct  198  ICETADQGRKDDIAFLRERTGS  219


>gi|289552926|ref|ZP_06442136.1| LOW QUALITY PROTEIN: endonuclease IV end [Mycobacterium tuberculosis 
KZN 605]
 gi|289437558|gb|EFD20051.1| LOW QUALITY PROTEIN: endonuclease IV end [Mycobacterium tuberculosis 
KZN 605]
Length=230

 Score =  392 bits (1006),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 196/202 (98%), Positives = 198/202 (99%), Gaps = 1/202 (0%)

Query  52   PIYVHA-PYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF  110
            P ++ A  YLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF
Sbjct  29   PAHLRACAYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF  88

Query  111  QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG  170
            QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG
Sbjct  89   QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG  148

Query  171  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  230
            EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV
Sbjct  149  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  208

Query  231  ICETADQGRKDDIAFLRERTGS  252
            ICETADQGRKDDIAFLRERTGS
Sbjct  209  ICETADQGRKDDIAFLRERTGS  230


>gi|289760796|ref|ZP_06520174.1| endonuclease IV [Mycobacterium tuberculosis GM 1503]
 gi|289708302|gb|EFD72318.1| endonuclease IV [Mycobacterium tuberculosis GM 1503]
 gi|328457393|gb|AEB02816.1| endonuclease IV end [Mycobacterium tuberculosis KZN 4207]
Length=183

 Score =  367 bits (943),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 182/183 (99%), Positives = 183/183 (100%), Gaps = 0/183 (0%)

Query  70   VRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLETEVPVYLE  129
            +RIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLETEVPVYLE
Sbjct  1    MRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLETEVPVYLE  60

Query  130  NTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIKAITGRIDL  189
            NTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIKAITGRIDL
Sbjct  61   NTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIKAITGRIDL  120

Query  190  VHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKDDIAFLRER  249
            VHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKDDIAFLRER
Sbjct  121  VHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKDDIAFLRER  180

Query  250  TGS  252
            TGS
Sbjct  181  TGS  183


>gi|269129135|ref|YP_003302505.1| xylose isomerase domain-containing protein [Thermomonospora curvata 
DSM 43183]
 gi|268314093|gb|ACZ00468.1| Xylose isomerase domain protein TIM barrel [Thermomonospora curvata 
DSM 43183]
Length=256

 Score =  305 bits (782),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 148/250 (60%), Positives = 186/250 (75%), Gaps = 5/250 (2%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DPLA A A GA+VVQ FLG+PQ WK P   +  A L  + + +Y+HAPY++N
Sbjct  3    IGAHVDQHDPLAGARAVGAEVVQFFLGDPQGWKKPVVPEAVAELDGSGVDVYIHAPYVVN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET  122
            +A++NNR+R+PSR+IL E   AAA IGA A+IVHGGHV   +D + GF+ WRK  +R++ 
Sbjct  63   VATSNNRIRVPSRRILSEQLQAAAQIGAKALIVHGGHVLSGDDPEVGFENWRKVFERIDC  122

Query  123  EVPVYLENTAGGDHAMARRFDTIARLWDVIG-----DTGIGFCLDTCHTWAAGEALTDAV  177
             +P+Y+ENTAGG +AMARR D IARLW+V+G     D  +GFCLDTCH  AAGE L D V
Sbjct  123  PIPIYIENTAGGGNAMARRLDRIARLWEVLGQVPGIDGKLGFCLDTCHAHAAGEELIDVV  182

Query  178  DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ  237
            DRIKAITGRIDLVHCN+SRD  GSG DRHANL SG ID +L+V+ V++AGAPV+ ET   
Sbjct  183  DRIKAITGRIDLVHCNNSRDAFGSGADRHANLESGTIDTELIVSVVRSAGAPVVVETPPA  242

Query  238  GRKDDIAFLR  247
            G+  DIA LR
Sbjct  243  GQAADIALLR  252


>gi|256381015|ref|YP_003104675.1| endonuclease IV [Actinosynnema mirum DSM 43827]
 gi|255925318|gb|ACU40829.1| apurinic endonuclease Apn1 [Actinosynnema mirum DSM 43827]
Length=256

 Score =  301 bits (772),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 151/250 (61%), Positives = 183/250 (74%), Gaps = 4/250 (1%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DPLAAA   GA+VVQ FL +PQSWKAP     A ALK + L ++VHAPYLIN
Sbjct  3    IGAHVRDDDPLAAAAERGAEVVQFFLSDPQSWKAPGAHQHARALKDSELDVFVHAPYLIN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET  122
            +AS NNRVRIPSRK + +  A AA++GA  +IVHGGHV  D+D D G   WRK  +R   
Sbjct  63   VASLNNRVRIPSRKAVVQHAARAAEVGALGLIVHGGHVTKDDDPDDGIANWRKLFERQVD  122

Query  123  E----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
            E    VP+ +ENTAGGD+AMAR FD + RLWD +G+ G GFCLDTCH +AAGE L   V+
Sbjct  123  EGGFGVPILIENTAGGDNAMARSFDRLGRLWDAVGEFGAGFCLDTCHAFAAGEDLVGVVE  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQG  238
            R+KA+TGRIDLVH N+SRDE GS RDRHAN+ SG+IDP+ LVA   +AGAPV+ ET   G
Sbjct  183  RVKALTGRIDLVHLNNSRDEFGSSRDRHANVESGKIDPEQLVAVCASAGAPVLVETPGDG  242

Query  239  RKDDIAFLRE  248
            +  DIA+LRE
Sbjct  243  QAADIAYLRE  252


>gi|134103773|ref|YP_001109434.1| endonuclease IV [Saccharopolyspora erythraea NRRL 2338]
 gi|291007700|ref|ZP_06565673.1| endonuclease IV [Saccharopolyspora erythraea NRRL 2338]
 gi|133916396|emb|CAM06509.1| endonuclease IV [Saccharopolyspora erythraea NRRL 2338]
Length=256

 Score =  300 bits (768),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 150/254 (60%), Positives = 188/254 (75%), Gaps = 4/254 (1%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DP++AA   GA+VVQ FL +PQ WKAPKP   A  L+ + L +++H+PY+IN
Sbjct  3    IGAHVRDDDPVSAAAERGAEVVQFFLSDPQGWKAPKPHPQADELRESDLAVFIHSPYVIN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE-  121
            +AS NNR+RIPSRK++ +   AAA +GA  ++VHGGHV  D+D  +G   WRK  +R   
Sbjct  63   VASLNNRIRIPSRKLVTQHAKAAAAVGAQGLVVHGGHVTKDDDPAEGVANWRKMFERQAD  122

Query  122  ---TEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
                EVPV +ENTAGG +AMARRFD +ARLWD +G+ G GFCLDTCH  AAGE L D VD
Sbjct  123  EGGFEVPVLIENTAGGANAMARRFDALARLWDAVGEFGAGFCLDTCHAHAAGEELLDVVD  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQG  238
            R+K ITGRIDLVH NDSRD  GS RDRHAN+G+G+IDP+LLVA   +AGAPV+ ET  +G
Sbjct  183  RVKTITGRIDLVHLNDSRDGFGSSRDRHANIGAGEIDPELLVAVCSSAGAPVVVETPGEG  242

Query  239  RKDDIAFLRERTGS  252
            + DDIA+LRER  S
Sbjct  243  QADDIAYLRERCPS  256


>gi|271970525|ref|YP_003344721.1| apurinic endonuclease Apn1 [Streptosporangium roseum DSM 43021]
 gi|270513700|gb|ACZ91978.1| apurinic endonuclease Apn1 [Streptosporangium roseum DSM 43021]
Length=252

 Score =  295 bits (754),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 141/247 (58%), Positives = 183/247 (75%), Gaps = 1/247 (0%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DPL  A A  A+V Q FLG+PQ WK P   +    ++ + + +Y+HAPY+IN
Sbjct  4    IGAHVDQDDPLTHARARDAEVAQFFLGDPQGWKGPVIGEKTPEIRDSGVDVYIHAPYVIN  63

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET  122
            +A+ANNR+RIPSRK+L    AAAA++GA  +IVHGGHV   +D  KGF  WRK  +RLE 
Sbjct  64   VATANNRIRIPSRKLLSSNLAAAAELGAKGLIVHGGHVGAGDDPQKGFDNWRKVFERLEE  123

Query  123  -EVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIK  181
             EVPV +ENTAGG +AMAR+ + IARLWD +    +GFCLDTCH  AAGE L D V+RI 
Sbjct  124  HEVPVLIENTAGGGNAMARKLERIARLWDALDGFDVGFCLDTCHAHAAGEELADVVERIM  183

Query  182  AITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKD  241
            AITGRIDLVHCNDSRD AGSG DRHANLG+G+ID +L+++  ++AGAP++ ET  +G+ +
Sbjct  184  AITGRIDLVHCNDSRDAAGSGADRHANLGAGRIDTELILSVCRSAGAPIVVETPFEGQAE  243

Query  242  DIAFLRE  248
            DI+ LR+
Sbjct  244  DISLLRK  250


>gi|238061880|ref|ZP_04606589.1| endonuclease IV [Micromonospora sp. ATCC 39149]
 gi|237883691|gb|EEP72519.1| endonuclease IV [Micromonospora sp. ATCC 39149]
Length=263

 Score =  294 bits (753),  Expect = 7e-78, Method: Compositional matrix adjust.
 Identities = 150/255 (59%), Positives = 183/255 (72%), Gaps = 6/255 (2%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DPL+ A +  A+ VQ FL +PQ WKAPKPR+DA  L+AA + +YVHAPY+IN
Sbjct  3    IGAHVDSADPLSEATSRAAEAVQFFLSDPQGWKAPKPREDADRLRAAEIDLYVHAPYVIN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRK----ALD  118
            +A+ NNR+RIPSRK+L     AAA+IGA  +IVHGGHV   +D+  GF  WRK    A D
Sbjct  63   VATLNNRIRIPSRKLLLGHATAAAEIGAKGLIVHGGHVNAGDDLAVGFDNWRKTFAYAAD  122

Query  119  RLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
                 VPV +ENTAGGD+A ARR D +ARLWD +G+  +GFCLDTCH  A GE L   VD
Sbjct  123  AGGFAVPVLIENTAGGDNACARRLDALARLWDALGEYEVGFCLDTCHAHAGGEELLGLVD  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICET--AD  236
            R+KAITGRIDLVH N+S+D  GSGRDRH NL  G IDP+L+VA ++AAGAP I ET    
Sbjct  183  RVKAITGRIDLVHANNSKDTFGSGRDRHDNLDGGTIDPELVVAVIRAAGAPAIVETPGGA  242

Query  237  QGRKDDIAFLRERTG  251
             G+  DIAFLR+R G
Sbjct  243  DGQGADIAFLRDRLG  257


>gi|331700358|ref|YP_004336597.1| Deoxyribonuclease IV [Pseudonocardia dioxanivorans CB1190]
 gi|326955047|gb|AEA28744.1| Deoxyribonuclease IV (phage-T(4)-induced) [Pseudonocardia dioxanivorans 
CB1190]
Length=256

 Score =  292 bits (747),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 147/255 (58%), Positives = 185/255 (73%), Gaps = 4/255 (1%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIG+HV   DP+ AA   GADVVQIFL +PQ WK P     A  L++  L + VH+PY+
Sbjct  1    MLIGAHVRDDDPVGAAAERGADVVQIFLSDPQGWKKPPAHPQAEQLRSGDLTVVVHSPYV  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            +N+AS NNR+RIPSRK++ +  A AA++GA  ++VHGGHV   +D   GF+ WRK ++R 
Sbjct  61   VNVASPNNRIRIPSRKLVVQHAAEAANVGAIGLVVHGGHVTQKDDPAVGFENWRKFVERQ  120

Query  121  ETE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA  176
            + E    VPV++ENTAGGD+AMAR FD +ARLWD +G+ G+GFCLDTCH +AAGE L D 
Sbjct  121  QDEGGFAVPVFIENTAGGDNAMARSFDALARLWDAVGEFGVGFCLDTCHAFAAGEDLVDV  180

Query  177  VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETAD  236
            VDR KAITGRIDLVH N+SRDE GS RDRHAN+ SG ID   L A   AAGAP++ ET  
Sbjct  181  VDRAKAITGRIDLVHLNNSRDEFGSARDRHANIDSGTIDAGQLAAVAAAAGAPIVVETPA  240

Query  237  QGRKDDIAFLRERTG  251
            +G+  DI FLRER G
Sbjct  241  EGQAADITFLRERLG  255


>gi|302531294|ref|ZP_07283636.1| endonuclease IV [Streptomyces sp. AA4]
 gi|302440189|gb|EFL12005.1| endonuclease IV [Streptomyces sp. AA4]
Length=257

 Score =  288 bits (738),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 143/254 (57%), Positives = 182/254 (72%), Gaps = 8/254 (3%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DPLAA     ADVVQ FL +PQ WKAPKP      +KA+ + +++HAPYLIN
Sbjct  3    IGAHVRDDDPLAAVAEREADVVQFFLSDPQGWKAPKPHPHGEEIKASPVEVFIHAPYLIN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET  122
            +AS NNR+RIPSRK + +    AA IGA  +IVHGGHV   +D+++G   WRK  +R E 
Sbjct  63   VASKNNRIRIPSRKNVTQHADGAAAIGAKGLIVHGGHVGAGDDVEEGLVNWRKLFER-EA  121

Query  123  E-----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV  177
            E     VP+ +ENTAGGD+AM R  D IARLWD +G+ G GFCLDTCH +AAG  L  AV
Sbjct  122  EKGGFAVPILIENTAGGDNAMTRELDVIARLWDKVGEFGAGFCLDTCHAYAAGWDLETAV  181

Query  178  DRIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICETA  235
            +++KAITGRIDLVHCN+SRDE GS RDRHA++  G G I+P+LL   V+ AGAPV+ ET 
Sbjct  182  EKVKAITGRIDLVHCNNSRDEHGSNRDRHASVVDGDGTIEPELLAEVVRQAGAPVVVETP  241

Query  236  DQGRKDDIAFLRER  249
             +G+  DIA+LR++
Sbjct  242  GKGQAADIAYLRKQ  255


>gi|333922183|ref|YP_004495764.1| putative endonuclease IV [Amycolicicoccus subflavus DQS3-9A1]
 gi|333484404|gb|AEF42964.1| Putative endonuclease IV [Amycolicicoccus subflavus DQS3-9A1]
Length=263

 Score =  287 bits (735),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 142/251 (57%), Positives = 181/251 (73%), Gaps = 5/251 (1%)

Query  3    IGSHVSP-TDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLI  61
            IG+HV    DPL +A+  GA+VVQ+F+ +PQ W  PKP   A  L+ + + + VH+ Y+I
Sbjct  3    IGAHVRDDADPLGSAQRYGAEVVQLFVTDPQKWNKPKPHPQADQLRKSGIDVVVHSSYVI  62

Query  62   NLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE  121
            N+AS NNR+RIPSRK +Q+   AAA+ GA  ++VHGGHV     +++GF  WRK  +R +
Sbjct  63   NVASLNNRIRIPSRKAVQQQATAAAEFGAFGLVVHGGHVRQGEAVEEGFTNWRKLFERQD  122

Query  122  TE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV  177
             E    VP+ +ENTAGGD AM+R FD+IARLWD +G+ G GFCLDTCH WAAGE L DAV
Sbjct  123  DEGGFAVPILIENTAGGDSAMSRYFDSIARLWDHVGEFGAGFCLDTCHAWAAGENLVDAV  182

Query  178  DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ  237
            +RI++ITGRIDLVH N+SRDE  S RDRHANL  G IDP LL   V+ AGAPV+ ET  +
Sbjct  183  ERIRSITGRIDLVHLNNSRDEFNSARDRHANLADGTIDPQLLTEVVRQAGAPVVLETPAE  242

Query  238  GRKDDIAFLRE  248
            G +DDI FLRE
Sbjct  243  GLEDDIEFLRE  253


>gi|340532790|gb|AEK47995.1| deoxyribonuclease IV [Amycolatopsis mediterranei S699]
Length=257

 Score =  285 bits (728),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 143/257 (56%), Positives = 181/257 (71%), Gaps = 6/257 (2%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIG+HV   DPL A     A+VVQ FL +PQ WKAPKP     A+KA  + +++H+PYL
Sbjct  1    MLIGAHVRDDDPLPAVVERKAEVVQFFLSDPQGWKAPKPHPHGEAIKADPVEVFIHSPYL  60

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+AS NNR+RIPSRK + +    AA IGA  +IVHGGHV  ++D + G   WRK  +R 
Sbjct  61   INVASLNNRIRIPSRKNVTQHADGAAAIGAKGLIVHGGHVGANDDAEAGLDNWRKLFERE  120

Query  121  ET----EVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA  176
            +     +VP+ +ENTAGG++AM R  D IARLWD +G+ G GFCLDTCH +AAG  L  A
Sbjct  121  QEKGGFKVPILIENTAGGENAMTRDLDVIARLWDKVGEFGAGFCLDTCHAFAAGWDLATA  180

Query  177  VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICET  234
            V R+KAITGRIDLVH N+SRDE GS RDRHAN+  G G IDP++LVA  + AGAPV+ ET
Sbjct  181  VGRVKAITGRIDLVHLNNSRDEFGSTRDRHANVVQGDGTIDPEVLVAVAREAGAPVVVET  240

Query  235  ADQGRKDDIAFLRERTG  251
               G+  DIA+LRE+ G
Sbjct  241  PADGQAADIAYLREQLG  257


>gi|300791091|ref|YP_003771382.1| deoxyribonuclease IV [Amycolatopsis mediterranei U32]
 gi|299800605|gb|ADJ50980.1| deoxyribonuclease IV [Amycolatopsis mediterranei U32]
Length=260

 Score =  285 bits (728),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 143/257 (56%), Positives = 181/257 (71%), Gaps = 6/257 (2%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            +LIG+HV   DPL A     A+VVQ FL +PQ WKAPKP     A+KA  + +++H+PYL
Sbjct  4    MLIGAHVRDDDPLPAVVERKAEVVQFFLSDPQGWKAPKPHPHGEAIKADPVEVFIHSPYL  63

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            IN+AS NNR+RIPSRK + +    AA IGA  +IVHGGHV  ++D + G   WRK  +R 
Sbjct  64   INVASLNNRIRIPSRKNVTQHADGAAAIGAKGLIVHGGHVGANDDAEAGLDNWRKLFERE  123

Query  121  ET----EVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA  176
            +     +VP+ +ENTAGG++AM R  D IARLWD +G+ G GFCLDTCH +AAG  L  A
Sbjct  124  QEKGGFKVPILIENTAGGENAMTRDLDVIARLWDKVGEFGAGFCLDTCHAFAAGWDLATA  183

Query  177  VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICET  234
            V R+KAITGRIDLVH N+SRDE GS RDRHAN+  G G IDP++LVA  + AGAPV+ ET
Sbjct  184  VGRVKAITGRIDLVHLNNSRDEFGSTRDRHANVVQGDGTIDPEVLVAVAREAGAPVVVET  243

Query  235  ADQGRKDDIAFLRERTG  251
               G+  DIA+LRE+ G
Sbjct  244  PADGQAADIAYLREQLG  260


>gi|256389569|ref|YP_003111133.1| endonuclease IV [Catenulispora acidiphila DSM 44928]
 gi|256355795|gb|ACU69292.1| apurinic endonuclease Apn1 [Catenulispora acidiphila DSM 44928]
Length=262

 Score =  284 bits (726),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 148/257 (58%), Positives = 180/257 (71%), Gaps = 9/257 (3%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALKAAT----LPIYVH  56
            IGSHV   DP+A A A GAD VQIFLG+PQSWKAP       A+AL+AA     + +YVH
Sbjct  5    IGSHVGNEDPIAEAVARGADAVQIFLGDPQSWKAPTVAYPGGASALRAAAEQADVAVYVH  64

Query  57   APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA  116
            A Y+IN+A+ NNR+RIPSRK+LQ+T A AA+ GA  V+VHGGH    +  D GF  WRKA
Sbjct  65   AAYIINVAATNNRIRIPSRKLLQQTVALAAEAGARGVVVHGGHSTAADAPDAGFDNWRKA  124

Query  117  LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA  176
            +D+LE   PV++ENTAGGDHAMARR D IA+LWD +G +GIG CLDTCH +A G  L  A
Sbjct  125  VDQLEQHCPVFIENTAGGDHAMARRIDAIAKLWDAVGHSGIGLCLDTCHAFAGGIPLESA  184

Query  177  VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDP-DLLVAAVKAAGAPVICET-  234
            V  IKA+TGR+DLVH NDS+    SG DRHAN GSG+I P DL+   +  AG P ICET 
Sbjct  185  VADIKAVTGRVDLVHANDSQGGFDSGIDRHANFGSGEIAPADLIAQVIAEAGCPAICETP  244

Query  235  -ADQGRKDDIAFLRERT  250
               + +  DI +LRER 
Sbjct  245  GGAEAQAADIKWLRERV  261


>gi|326329089|ref|ZP_08195418.1| AP endonuclease, family 2 [Nocardioidaceae bacterium Broad-1]
 gi|325953171|gb|EGD45182.1| AP endonuclease, family 2 [Nocardioidaceae bacterium Broad-1]
Length=264

 Score =  283 bits (725),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 148/261 (57%), Positives = 183/261 (71%), Gaps = 12/261 (4%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAP--KPRDDAAALKA----ATLPIY  54
            V IG+HV  TDP+A A A GA +VQ FLG+PQS+K P     + AAALKA    A + +Y
Sbjct  3    VAIGAHVDQTDPVAEATARGASLVQFFLGDPQSYKGPVVTYAEGAAALKARAEEAGVDLY  62

Query  55   VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR  114
            VHAPY+IN+A+ NNR+RIPSRK+LQ+    AA++GA  +IVHGGHV  D+D  KGF  WR
Sbjct  63   VHAPYIINVATTNNRIRIPSRKLLQQHMDTAAEVGAKGLIVHGGHVNKDDDPAKGFDNWR  122

Query  115  KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI----GDTGIGFCLDTCHTWAAG  170
            KA++  + +VP+ +ENTAGGD+AMAR  D IA +W+ I    G   +GFCLDTCH  A G
Sbjct  123  KAIEATDIKVPLLIENTAGGDNAMARYLDRIAGVWEAISTAEGAENVGFCLDTCHAHAGG  182

Query  171  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  230
              L   V+ ++ ITGRIDLVHCNDSRDE  SG DRHAN G+G+IDPDLL   V+ AGAPV
Sbjct  183  NPLETVVEDVRKITGRIDLVHCNDSRDEFDSGADRHANFGAGRIDPDLLAGVVRDAGAPV  242

Query  231  ICETADQG--RKDDIAFLRER  249
            ICET         D A+LRER
Sbjct  243  ICETPGGAAEHTSDFAWLRER  263


>gi|324998549|ref|ZP_08119661.1| endonuclease IV [Pseudonocardia sp. P1]
Length=257

 Score =  282 bits (721),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 142/251 (57%), Positives = 176/251 (71%), Gaps = 5/251 (1%)

Query  3    IGSHV-SPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLI  61
            IG+HV    DPLA A   GA+V+Q+FL +PQ WK P P   AA L A+ + + VHAPY  
Sbjct  3    IGAHVRDAEDPLAEAGEVGAEVIQLFLSDPQGWKKPPPHPRAAELAASEVAVVVHAPYTA  62

Query  62   NLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE  121
            N+AS NNR+RIPSRKI+Q+  A AA++GA  ++VHGGHV  D+D   G   WRK ++R  
Sbjct  63   NVASTNNRIRIPSRKIVQQHLAGAAEVGAFGLVVHGGHVTKDDDPATGVDNWRKFVERQA  122

Query  122  TE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV  177
             E    VPV +ENTAGGD+AMARRFD + RLWD +G+ G+GFCLDTCH +A GE L   V
Sbjct  123  GEHGFDVPVLIENTAGGDNAMARRFDALGRLWDAVGEFGVGFCLDTCHAFAGGEELAGLV  182

Query  178  DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ  237
            +R +AITGRIDL+H N SRD   S RDRHAN+ SG I PD L A V  AGAPV+ ET  +
Sbjct  183  ERARAITGRIDLIHLNSSRDPFDSARDRHANIDSGTIPPDELAAVVAEAGAPVVVETPAE  242

Query  238  GRKDDIAFLRE  248
            G+  DIA+LRE
Sbjct  243  GQARDIAWLRE  253


>gi|296271512|ref|YP_003654144.1| apurinic endonuclease Apn1 [Thermobispora bispora DSM 43833]
 gi|296094299|gb|ADG90251.1| apurinic endonuclease Apn1 [Thermobispora bispora DSM 43833]
Length=266

 Score =  281 bits (720),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 144/252 (58%), Positives = 180/252 (72%), Gaps = 5/252 (1%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DPLA A    ADVVQ FLG+PQ WK P     A AL+ + + +Y+HAPY+IN
Sbjct  10   IGAHVDQDDPLAHAAELDADVVQFFLGDPQGWKGPVLPATAGALRESGVDVYIHAPYVIN  69

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET  122
            +ASANNR+RIPSRK+L+    AAA +GA  ++VHGGHV   +D   GF  WRK  +R+  
Sbjct  70   VASANNRIRIPSRKLLERHLEAAAALGAKGLVVHGGHVTAGDDPQTGFDNWRKVFERIAC  129

Query  123  EVPVYLENTAGGDHAMARRFDTIARLWDVIG-----DTGIGFCLDTCHTWAAGEALTDAV  177
             +P+ +ENTAGG +AMAR  D IARLWD +       + +GFCLDTCH  A GE L+  V
Sbjct  130  PIPILIENTAGGGNAMARTLDRIARLWDAVTAGAPDPSVVGFCLDTCHFHAGGEELSGLV  189

Query  178  DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ  237
            DR+KAITGRIDLVHCNDSRD  GSG DRHAN+G G+IDP+ LV   +AAGAP++ ET   
Sbjct  190  DRVKAITGRIDLVHCNDSRDAFGSGADRHANIGEGRIDPEALVEVCRAAGAPIVVETPPA  249

Query  238  GRKDDIAFLRER  249
            G++DDIAFLR+R
Sbjct  250  GQRDDIAFLRKR  261


>gi|284034860|ref|YP_003384791.1| xylose isomerase domain-containing protein [Kribbella flavida 
DSM 17836]
 gi|283814153|gb|ADB35992.1| Xylose isomerase domain protein TIM barrel [Kribbella flavida 
DSM 17836]
Length=267

 Score =  281 bits (719),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 146/263 (56%), Positives = 180/263 (69%), Gaps = 14/263 (5%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALK----AATLPIYVH  56
            +G+HV   DP A A   GAD+VQ FLG+PQ WK PK    D A ALK    A  + +YVH
Sbjct  5    LGAHVDQEDPPAEAADRGADLVQFFLGDPQGWKGPKVSYADGAEALKERAEAVGVDLYVH  64

Query  57   APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA  116
            APY++N+A+ NNR+RIPSRK+LQ+T   AA+IGA  VIVHGGHV   +D + GF  WRK 
Sbjct  65   APYVLNVATLNNRIRIPSRKLLQQTLDKAAEIGARGVIVHGGHVGKGDDPEAGFDNWRKC  124

Query  117  LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG------IGFCLDTCHTWAAG  170
            ++R E  VP+ +ENTAGGD+AMAR  D I RLW  + D+G      +GFCLDTCH  A G
Sbjct  125  IERSELPVPLLIENTAGGDNAMARHLDRIGRLWQAVQDSGNEHVDRVGFCLDTCHFHAGG  184

Query  171  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  230
            E L   VD+++AITGRIDLVH N SRD  GSG DRH+N   G+IDP  +VA VK AGAPV
Sbjct  185  EELATVVDKVRAITGRIDLVHANGSRDAFGSGADRHSNFAEGEIDPADIVAVVKTAGAPV  244

Query  231  ICET--ADQGRKDDIAFLRERTG  251
            + ET  A+ G+K DI +LR   G
Sbjct  245  VVETPNAEHGQKADIDYLRAHLG  267


>gi|302870700|ref|YP_003839337.1| Xylose isomerase domain-containing protein [Micromonospora aurantiaca 
ATCC 27029]
 gi|315506937|ref|YP_004085824.1| xylose isomerase domain-containing protein [Micromonospora sp. 
L5]
 gi|302573559|gb|ADL49761.1| Xylose isomerase domain-containing protein TIM barrel [Micromonospora 
aurantiaca ATCC 27029]
 gi|315413556|gb|ADU11673.1| Xylose isomerase domain-containing protein TIM barrel [Micromonospora 
sp. L5]
Length=260

 Score =  281 bits (718),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 149/256 (59%), Positives = 187/256 (74%), Gaps = 6/256 (2%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV PTDPLA A A  A+ VQ FL +PQ WKAPKPR+DA  L++A + +YVHAPY+IN
Sbjct  3    IGAHVDPTDPLAEAAARQAEAVQFFLADPQGWKAPKPREDAERLRSADVDLYVHAPYVIN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRK----ALD  118
            +A+ NNR+RIPSRK+L    +AAAD+GA  +IVHGGHV   +D+  GF  WRK    A D
Sbjct  63   VATLNNRIRIPSRKLLLAHASAAADVGARGLIVHGGHVNAGHDVAVGFDNWRKTFAYAAD  122

Query  119  RLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
                 +PV +ENTAGGD+A AR  D++ARLWD +GD  +GFCLDTCH +A GE L   VD
Sbjct  123  SGGFPLPVLIENTAGGDNACARHLDSLARLWDALGDHEVGFCLDTCHAYAGGEELLGLVD  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETAD--  236
            R+KAITGRIDL+H N+S+    SG+DRH NL  G IDP+LLVA ++AAGAPVI ET    
Sbjct  183  RVKAITGRIDLIHANNSKGAFNSGQDRHDNLTGGTIDPELLVAVIRAAGAPVIVETPGGV  242

Query  237  QGRKDDIAFLRERTGS  252
            +G+  DIAFLR + G+
Sbjct  243  EGQAADIAFLRGQLGA  258


>gi|336322166|ref|YP_004602134.1| xylose isomerase domain-containing protein [Cellvibrio gilvus 
ATCC 13127]
 gi|336105747|gb|AEI13566.1| Xylose isomerase domain-containing protein TIM barrel [Cellvibrio 
gilvus ATCC 13127]
Length=259

 Score =  281 bits (718),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 139/247 (57%), Positives = 172/247 (70%), Gaps = 0/247 (0%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL  60
            VLIG+HV   DP+  A    A  VQIFL +PQ WK P PR+DA AL  + L +YVHAPYL
Sbjct  8    VLIGAHVRDDDPVGTAPQIDAQCVQIFLADPQGWKKPVPREDAQALLDSGLGVYVHAPYL  67

Query  61   INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL  120
            +N+AS NNRVRIPSR ++ +  AAAA +GA  ++VHGGHV D +D+  G + WRK  +R 
Sbjct  68   VNVASTNNRVRIPSRTMVAQHSAAAAVLGARGLVVHGGHVGDGDDVAVGVENWRKLFERA  127

Query  121  ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI  180
               V V +ENTAGG++A AR  D +A LWD IG   +G CLDTCH WAAGE L   VDR+
Sbjct  128  TFGVRVLVENTAGGENACARSLDRLAMLWDAIGGYDVGLCLDTCHAWAAGEDLETVVDRV  187

Query  181  KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK  240
            +AITGRIDLVH N SRDEAGSGRDRHAN  +G I P+L+   V+ AG   + ET  + + 
Sbjct  188  RAITGRIDLVHANSSRDEAGSGRDRHANFATGTIPPELIAHVVREAGCDALVETPAERQA  247

Query  241  DDIAFLR  247
            +DIAFLR
Sbjct  248  EDIAFLR  254


>gi|84498623|ref|ZP_00997386.1| endonuclease IV [Janibacter sp. HTCC2649]
 gi|84381156|gb|EAP97041.1| endonuclease IV [Janibacter sp. HTCC2649]
Length=264

 Score =  280 bits (717),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 145/261 (56%), Positives = 183/261 (71%), Gaps = 12/261 (4%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALKA----ATLPIY  54
            + IG+HV  TDPLA A A G  +VQ FLG+PQ +K P+ R    AA L+A    A + +Y
Sbjct  3    LTIGAHVDQTDPLAEAAARGTTLVQFFLGDPQGYKGPEIRYAGGAAGLRADAEAAGIALY  62

Query  55   VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR  114
            VHAPY+IN+A+ NNR+RIPSRK+LQ+   AAA+IGA  +IVHGGHV   +D + GF  WR
Sbjct  63   VHAPYIINVATTNNRIRIPSRKLLQQHVDAAAEIGAKGLIVHGGHVGKTDDPEVGFDNWR  122

Query  115  KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG----IGFCLDTCHTWAAG  170
            KA++  + ++P+ LENTAGGD+AMAR  + IA++WD IG       +GFCLDTCH  A G
Sbjct  123  KAIEATDLKLPLLLENTAGGDNAMARYLERIAKVWDAIGSASQADQVGFCLDTCHAHAGG  182

Query  171  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  230
              L   VD I AITGRIDLVHCNDSRD   SG DRHAN G+GQID DLL   V++AGAPV
Sbjct  183  NKLDTVVDDILAITGRIDLVHCNDSRDAFDSGADRHANFGAGQIDADLLAGVVRSAGAPV  242

Query  231  ICET--ADQGRKDDIAFLRER  249
            +CET    +  + D A+LR+R
Sbjct  243  VCETPGGAEEHQADFAWLRDR  263


>gi|23007412|ref|ZP_00049293.1| COG0648: Endonuclease IV [Magnetospirillum magnetotacticum MS-1]
Length=260

 Score =  279 bits (713),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 149/260 (58%), Positives = 183/260 (71%), Gaps = 13/260 (5%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALK----AATLPIYVH  56
            IG+H+  +D +A A + GADV QIFLG+PQSWK P+      A ALK    AA L + VH
Sbjct  3    IGAHLDQSDVIAQAASIGADVAQIFLGDPQSWKGPEFTFPGGAEALKDAATAADLELVVH  62

Query  57   APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA  116
            APY+IN+AS NNR+RIPSRK+LQ+    AA +GA  V+VHGGHV    D  KGF  WRKA
Sbjct  63   APYVINVASPNNRIRIPSRKLLQQIVDGAAAVGATGVVVHGGHVTAKEDPAKGFDNWRKA  122

Query  117  LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI----GDTGIGFCLDTCHTWAAGEA  172
            +D L+T+V VY+ENTAGGD +MARR D I  LW  +    G   +GFCLDTCH WA G  
Sbjct  123  IDALQTDVTVYIENTAGGDFSMARRLDRIEGLWAAVQQADGAENVGFCLDTCHAWAGGID  182

Query  173  LTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVIC  232
            LT AVD ++AITGR+DLVH N+SRD AGSG DRHA L +G IDP+LL+  V+AAG  V+C
Sbjct  183  LTTAVDDVRAITGRVDLVHLNNSRDTAGSGADRHAGLTAGTIDPELLLGVVRAAGTSVVC  242

Query  233  ET-ADQGRKDDIAFLRERTG  251
            ET AD     D+A+LRE+ G
Sbjct  243  ETHADV--PADVAWLREQVG  260


>gi|336120941|ref|YP_004575727.1| putative endonuclease IV [Microlunatus phosphovorus NM-1]
 gi|334688739|dbj|BAK38324.1| putative endonuclease IV [Microlunatus phosphovorus NM-1]
Length=266

 Score =  278 bits (710),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 147/264 (56%), Positives = 181/264 (69%), Gaps = 14/264 (5%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPK--PRDDAAALKAAT----LPIY  54
            + IG H    DP+A A+A GAD+ Q FLG+PQ WK P+      A ALK A     + +Y
Sbjct  4    IRIGGHGEQEDPIAEAKARGADLAQFFLGDPQGWKGPEIAYPGGAEALKQAAAEADIALY  63

Query  55   VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR  114
            VHAPY++N+A+ NNR+RIPSRK LQ+   AAA+IGAA VIVHGGHV  ++D  KGF  WR
Sbjct  64   VHAPYVLNVATTNNRIRIPSRKFLQQYLNAAAEIGAAGVIVHGGHVLKNDDPAKGFDNWR  123

Query  115  KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI-----GDTGIGFCLDTCHTWAA  169
            K ++ LE  VP+ +ENTAGGD AMARR + I RLWD +     GDT +GFCLDTCH  A 
Sbjct  124  KCIESLEMPVPLLIENTAGGDQAMARRMERIERLWDAVTSATGGDT-VGFCLDTCHAHAG  182

Query  170  GEALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAP  229
            G  L +AV R+  ITGRIDLVHCN+SRD   SG DRHANL  G+IDPD L+A + AAGAP
Sbjct  183  GIVLAEAVARVLEITGRIDLVHCNNSRDGFDSGADRHANLEDGEIDPDALLAVISAAGAP  242

Query  230  VICETAD--QGRKDDIAFLRERTG  251
            V+ ET     G+  DI++LR   G
Sbjct  243  VVVETPGGLAGQAADISWLRRHLG  266


>gi|229821166|ref|YP_002882692.1| endonuclease IV [Beutenbergia cavernae DSM 12333]
 gi|229567079|gb|ACQ80930.1| Xylose isomerase domain protein TIM barrel [Beutenbergia cavernae 
DSM 12333]
Length=260

 Score =  278 bits (710),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 140/260 (54%), Positives = 182/260 (70%), Gaps = 13/260 (5%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKP--RDDAAALKAAT----LPIYVH  56
            IG+HV  +DP+  A A GAD+VQIFLG+PQSWK   P     A AL+AAT    + +YVH
Sbjct  3    IGAHVDQSDPVTQARAIGADIVQIFLGDPQSWKVTGPDYPGGAEALRAATEEAGIDVYVH  62

Query  57   APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA  116
            APY+IN+AS NNR+RIPSRK LQ     AA +GA  V+VHGGHV    D+  G+  WRKA
Sbjct  63   APYVINVASPNNRIRIPSRKQLQGVVHEAAKVGAKGVVVHGGHVTAGTDLAVGYDNWRKA  122

Query  117  LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDT----GIGFCLDTCHTWAAGEA  172
            +D+L+  VP+++ENTAGG+H+MARR ++IARLWD +G       +GFCLDTCH WA G  
Sbjct  123  IDQLDAPVPIFIENTAGGEHSMARRLESIARLWDAVGQADGGDAVGFCLDTCHAWAGGID  182

Query  173  LTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVIC  232
            L DAV++++ ITGR+DLVH N+SRD   SG DRHAN+ +G+I P+ +   ++ AG P IC
Sbjct  183  LADAVEQVRGITGRVDLVHANNSRDAFDSGADRHANVVAGEIPPEAIAGVIRDAGTPAIC  242

Query  233  ETA-DQGRKDDIAFLRERTG  251
            ET  D G   DI +LR + G
Sbjct  243  ETHRDMG--PDITYLRSQLG  260


>gi|296138173|ref|YP_003645416.1| xylose isomerase [Tsukamurella paurometabola DSM 20162]
 gi|296026307|gb|ADG77077.1| Xylose isomerase domain protein TIM barrel [Tsukamurella paurometabola 
DSM 20162]
Length=256

 Score =  275 bits (704),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 140/251 (56%), Positives = 177/251 (71%), Gaps = 5/251 (1%)

Query  3    IGSHV-SPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLI  61
            IG+HV S T P+  AE+ G DV+Q+F+ +PQSWK P+P     AL+ + L I VH+ Y+I
Sbjct  3    IGAHVRSDTHPVETAESLGVDVIQMFVADPQSWKKPEPHPQTQALRDSPLEIVVHSAYVI  62

Query  62   NLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE  121
            N+AS NNR+R+PSRK +++  AAAAD+GA  ++VHGGH+ D  D+  G   WRK   R E
Sbjct  63   NVASLNNRLRMPSRKAVEQQAAAAADLGAFGLVVHGGHLRDGEDLQGGIDNWRKLFTRQE  122

Query  122  TE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV  177
             +    VP+ +ENTAGGD A+AR+ +TI RLWD +GD G GFCLDTCH WA GE L   V
Sbjct  123  EKGGFGVPILIENTAGGDGAIARQLETIDRLWDAVGDQGAGFCLDTCHAWAGGEELLGIV  182

Query  178  DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ  237
            +R+ AITGRIDLVH N+SRDE  S RDRHANL  G IDPDLL    +AA APVI ET   
Sbjct  183  ERVLAITGRIDLVHLNNSRDEFDSARDRHANLQDGTIDPDLLADVARAADAPVILETPAD  242

Query  238  GRKDDIAFLRE  248
            G  DD+A+L+E
Sbjct  243  GLADDVAYLKE  253


>gi|257057873|ref|YP_003135705.1| Endonuclease IV [Saccharomonospora viridis DSM 43017]
 gi|256587745|gb|ACU98878.1| Endonuclease IV [Saccharomonospora viridis DSM 43017]
Length=256

 Score =  275 bits (702),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 139/253 (55%), Positives = 173/253 (69%), Gaps = 6/253 (2%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV   DPL+AA    AD VQ FL +PQ WK P+P   A  L  A + +Y+HAPY++N
Sbjct  3    IGAHVHADDPLSAARERAADSVQFFLSDPQGWKKPQPHPQATELADAGIDVYIHAPYVLN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL--  120
            +AS NNR+RIPSRK+L +  AAAA+ GA  ++VHGGHV    D  +G   WRK  +R   
Sbjct  63   VASLNNRIRIPSRKVLGQHTAAAAETGARGLVVHGGHVRQGEDPAEGLANWRKLFERRGE  122

Query  121  --ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
              + EVP+ +ENTAGG  AMAR  D IARLWD + D G+GFCLDTCH +AAG  L + V+
Sbjct  123  QGDFEVPLLIENTAGGASAMARDLDMIARLWDEVADFGVGFCLDTCHAYAAGWDLAETVE  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICETAD  236
            R++AITGRIDLVH N+SRD  GS RDRHAN+   +G ID +LLVA  + A APVI ET  
Sbjct  183  RVRAITGRIDLVHLNNSRDPHGSQRDRHANVVGEAGTIDTELLVAVAREAAAPVIVETPP  242

Query  237  QGRKDDIAFLRER  249
             G+  DI FLR R
Sbjct  243  DGQATDIEFLRAR  255


>gi|291303844|ref|YP_003515122.1| apurinic endonuclease Apn1 [Stackebrandtia nassauensis DSM 44728]
 gi|290573064|gb|ADD46029.1| apurinic endonuclease Apn1 [Stackebrandtia nassauensis DSM 44728]
Length=258

 Score =  273 bits (699),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 139/252 (56%), Positives = 172/252 (69%), Gaps = 6/252 (2%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IGSHV  + PL  A   GA+VVQ F+G+PQ WK P+ R DA AL+A+ + I+VHAPY+IN
Sbjct  3    IGSHVDASSPLDEAAKRGAEVVQFFIGDPQGWKKPESRPDAEALRASDVDIFVHAPYVIN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKAL----D  118
            +AS NNR+RIPSRK+L +    AA+IGA  +IVHGGHV  D D+  GF  WRKA     D
Sbjct  63   VASPNNRIRIPSRKLLLQQARVAAEIGAKGLIVHGGHVTKDEDMAVGFANWRKAFEFGAD  122

Query  119  RLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
            +    +P+ +ENTAGGD A ARR + I RLW+ +GD   GFCLDTCH  A G  L+D VD
Sbjct  123  QGGFGLPILIENTAGGDKACARRLENIERLWEAVGDFDPGFCLDTCHAHAGGLDLSDVVD  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETAD--  236
            R KAITG IDL+H NDSRD   SGRDRHANLG+G IDP  +V  + AA  P + ET    
Sbjct  183  RAKAITGHIDLIHANDSRDTFDSGRDRHANLGAGHIDPQRIVDIISAARCPAVVETPGDA  242

Query  237  QGRKDDIAFLRE  248
            + +  DIA +RE
Sbjct  243  EAQSADIALIRE  254


>gi|317126547|ref|YP_004100659.1| endonuclease IV [Intrasporangium calvum DSM 43043]
 gi|315590635|gb|ADU49932.1| Endonuclease IV [Intrasporangium calvum DSM 43043]
Length=265

 Score =  273 bits (697),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 146/259 (57%), Positives = 172/259 (67%), Gaps = 12/259 (4%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAAL------KAATLPIYVH  56
            IG+HV   DP+A A A  A + Q FLG+PQS+K P  R    A       + A + +YVH
Sbjct  5    IGAHVDQEDPVAEARARHATLSQFFLGDPQSYKGPVVRHAGGAAGLRAAAETAGVDLYVH  64

Query  57   APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA  116
            APY IN+AS NNR+RIP RK+LQ+   AAA+IGA  VIVHGGH+  D D  +GF  WRK 
Sbjct  65   APYPINVASLNNRIRIPGRKLLQQHLLAAAEIGAKGVIVHGGHLGVDEDSARGFDNWRKC  124

Query  117  LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG----IGFCLDTCHTWAAGEA  172
            +D LE  VP+ +ENTAGGDHAMARR + IARLWD IG       +GFCLDTCH  A G  
Sbjct  125  IDGLEMPVPLLIENTAGGDHAMARRLEAIARLWDAIGTASGGDTVGFCLDTCHAHAGGND  184

Query  173  LTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVIC  232
            L   VDR+KAITGRIDLVH NDSRD   SG DRH NLGSG ID   L   V+AA APV+C
Sbjct  185  LGTIVDRVKAITGRIDLVHANDSRDAFDSGADRHTNLGSGHIDAAALADVVRAASAPVVC  244

Query  233  ET--ADQGRKDDIAFLRER  249
            ET    +G+  DI +LR R
Sbjct  245  ETPGGREGQSADIEWLRTR  263


>gi|145597066|ref|YP_001161363.1| endonuclease IV [Salinispora tropica CNB-440]
 gi|145306403|gb|ABP56985.1| Endonuclease IV [Salinispora tropica CNB-440]
Length=263

 Score =  273 bits (697),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 147/255 (58%), Positives = 177/255 (70%), Gaps = 6/255 (2%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV  +DPLA A A  AD VQ FL +PQ WKAPKPR DA  L+ A + +YVHAPY+IN
Sbjct  3    IGAHVDSSDPLAEATARTADTVQFFLSDPQGWKAPKPRTDADRLRDAEVDLYVHAPYVIN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET  122
            LA+ NNR+RIPSRK+L     AAA +GA  +IVHGGHV   +D+  GF  WRKA      
Sbjct  63   LATLNNRIRIPSRKLLLAHAQAAAAVGARGLIVHGGHVNAGDDLATGFDNWRKAFAYAAE  122

Query  123  E----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
                 VPV +ENTAGG +A ARR D +ARLWD IGD  +GFCLDTCH +A GE L   VD
Sbjct  123  SGGFGVPVLIENTAGGANACARRLDALARLWDAIGDHEVGFCLDTCHAYAGGEELLGLVD  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICET--AD  236
            RIKAITGRIDL+H N+S+    SG+DRH NL  G IDP+ +VA ++AAGAPV+ ET    
Sbjct  183  RIKAITGRIDLIHANNSKGTFNSGQDRHDNLTGGTIDPEQVVAVIRAAGAPVVVETPGGA  242

Query  237  QGRKDDIAFLRERTG  251
             G+  DI FLRE+ G
Sbjct  243  GGQAADITFLREQLG  257


>gi|330470803|ref|YP_004408546.1| endonuclease IV [Verrucosispora maris AB-18-032]
 gi|328813774|gb|AEB47946.1| endonuclease IV [Verrucosispora maris AB-18-032]
Length=263

 Score =  271 bits (694),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 151/251 (61%), Positives = 179/251 (72%), Gaps = 6/251 (2%)

Query  3    IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN  62
            IG+HV PTDPLA A A  AD VQ FL +PQ WKAP+PR DA  L+ A + IYVHAPY++N
Sbjct  3    IGAHVDPTDPLAEAAAREADAVQFFLADPQGWKAPQPRADAEQLRTADVDIYVHAPYVVN  62

Query  63   LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET  122
            +A+ NNR+RIPSRK+L     AAA IGA  +IVHGGHV   +D   GF  WRKAL   + 
Sbjct  63   VATGNNRIRIPSRKLLLAHAKAAAAIGAKGLIVHGGHVNAGDDPQTGFDNWRKALTYAQE  122

Query  123  E----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD  178
                 +PV +ENTAGG++A ARR D +ARLWD +GD  +GFCLDTCH  A GE L   VD
Sbjct  123  AGGFGLPVLIENTAGGENACARRLDALARLWDAVGDHEVGFCLDTCHAHAGGEELLGLVD  182

Query  179  RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICET--AD  236
            R+KAITGRIDLVH N+S+D  GSGRDRH NL  G IDP+LLV  ++AAGAP I ET    
Sbjct  183  RVKAITGRIDLVHANNSKDAFGSGRDRHDNLRGGTIDPELLVTVIRAAGAPAIVETPGGT  242

Query  237  QGRKDDIAFLR  247
             G+ DDIAFLR
Sbjct  243  TGQGDDIAFLR  253


>gi|269958062|ref|YP_003327851.1| xylose isomerase domain-containing protein [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269306743|gb|ACZ32293.1| Xylose isomerase domain protein TIM barrel [Xylanimonas cellulosilytica 
DSM 15894]
Length=262

 Score =  270 bits (690),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 145/262 (56%), Positives = 178/262 (68%), Gaps = 17/262 (6%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKP---------RDDAAALKAATL  51
            + IG+HV   D +A A+A GA+V Q+FLG+PQSWK             R+DAAA   A +
Sbjct  3    IRIGAHVDGADAVAQAQAIGAEVAQVFLGDPQSWKVTGSGYPGGEEALREDAAA---AGI  59

Query  52   PIYVHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQ  111
             +YVHAPY IN+AS NNR+RIPSRK+LQ T   AA IGA  V+VHGGHV   +  + GF 
Sbjct  60   DLYVHAPYGINVASTNNRIRIPSRKLLQATLEGAAAIGARGVVVHGGHVTGKDAPEVGFD  119

Query  112  RWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG----IGFCLDTCHTW  167
             WRKA+D L+T+VPV +ENTAGGD AMAR  + I +LW  +  +     +GF LDTCH W
Sbjct  120  NWRKAIDSLDTDVPVLIENTAGGDFAMARHLERIEQLWAAVQSSTNASVVGFTLDTCHAW  179

Query  168  AAGEALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAG  227
            A G  L  AV  I+AITGRIDLVH NDSRD AGSG DRHA+ G+GQI PDLL   + AAG
Sbjct  180  AGGIDLATAVADIRAITGRIDLVHANDSRDTAGSGADRHAHFGAGQIPPDLLTGVIAAAG  239

Query  228  APVICETADQGRKDDIAFLRER  249
            APV+CET       DIA+L++R
Sbjct  240  APVVCETHGD-MTPDIAWLQDR  260


>gi|334338341|ref|YP_004543493.1| Deoxyribonuclease IV (phage-T(4)-induced) [Isoptericola variabilis 
225]
 gi|334108709|gb|AEG45599.1| Deoxyribonuclease IV (phage-T(4)-induced) [Isoptericola variabilis 
225]
Length=262

 Score =  269 bits (688),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 142/260 (55%), Positives = 172/260 (67%), Gaps = 13/260 (5%)

Query  1    VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAAT------LPIY  54
            V IG+HV  +D +A A+  GADVVQ+F+ +PQ+WK P                   L +Y
Sbjct  3    VKIGAHVDLSDAVAQAKEIGADVVQVFVSDPQAWKVPPIEHPGGTEAFREEAAAAGLDVY  62

Query  55   VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR  114
            VHAPY+IN+AS NNR+RIPSRK+LQ+    A +IGA  VIVHGGHV   +D   GF  WR
Sbjct  63   VHAPYVINVASTNNRIRIPSRKLLQQVMVRAEEIGAKGVIVHGGHVTAKDDPAAGFDNWR  122

Query  115  KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI----GDTGIGFCLDTCHTWAAG  170
            KA+D LE++VPV +ENTAGGD +MARR + I +LW  +    G   +GF LDTCH WA G
Sbjct  123  KAIDALESDVPVLIENTAGGDFSMARRLERIEQLWAAVMQANGAENVGFTLDTCHAWAGG  182

Query  171  EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV  230
              L  AVD I+ ITGRIDLVH NDSRD AGSG DRH + G G I  +LLV  +  AGAPV
Sbjct  183  IDLATAVDEIRGITGRIDLVHANDSRDAAGSGADRHTHFGLGMIPEELLVGVIATAGAPV  242

Query  231  ICET-ADQGRKDDIAFLRER  249
            ICET  D G   DIA+LRER
Sbjct  243  ICETHGDMG--PDIAWLRER  260



Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 365242488240




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40