BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0670
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607810|ref|NP_215184.1| endonuclease IV [Mycobacterium tube... 506 1e-141
gi|340625689|ref|YP_004744141.1| putative endonuclease IV [Mycob... 500 1e-139
gi|183981020|ref|YP_001849311.1| endonuclease IV (apurinase) [My... 439 2e-121
gi|118616535|ref|YP_904867.1| endonuclease IV [Mycobacterium ulc... 437 6e-121
gi|15828008|ref|NP_302271.1| endonuclease IV [Mycobacterium lepr... 422 2e-116
gi|118466381|ref|YP_883635.1| endonuclease IV [Mycobacterium avi... 421 6e-116
gi|315446021|ref|YP_004078900.1| endonuclease IV [Mycobacterium ... 417 8e-115
gi|296168515|ref|ZP_06850331.1| family 2 AP endonuclease [Mycoba... 417 1e-114
gi|145225669|ref|YP_001136347.1| endonuclease IV [Mycobacterium ... 417 1e-114
gi|120402272|ref|YP_952101.1| endonuclease IV [Mycobacterium van... 416 1e-114
gi|342858841|ref|ZP_08715495.1| endonuclease IV [Mycobacterium c... 416 2e-114
gi|333989325|ref|YP_004521939.1| endonuclease IV (apurinase) [My... 414 7e-114
gi|254822771|ref|ZP_05227772.1| endonuclease IV [Mycobacterium i... 413 1e-113
gi|108797946|ref|YP_638143.1| endonuclease IV [Mycobacterium sp.... 410 9e-113
gi|41410230|ref|NP_963066.1| endonuclease IV [Mycobacterium aviu... 404 8e-111
gi|118468437|ref|YP_885769.1| endonuclease IV [Mycobacterium sme... 403 1e-110
gi|254776936|ref|ZP_05218452.1| endonuclease IV [Mycobacterium a... 402 4e-110
gi|240167670|ref|ZP_04746329.1| endonuclease IV [Mycobacterium k... 401 5e-110
gi|253797612|ref|YP_003030613.1| endonuclease IV end [Mycobacter... 392 2e-107
gi|289552926|ref|ZP_06442136.1| LOW QUALITY PROTEIN: endonucleas... 392 3e-107
gi|289760796|ref|ZP_06520174.1| endonuclease IV [Mycobacterium t... 367 6e-100
gi|269129135|ref|YP_003302505.1| xylose isomerase domain-contain... 305 3e-81
gi|256381015|ref|YP_003104675.1| endonuclease IV [Actinosynnema ... 301 5e-80
gi|134103773|ref|YP_001109434.1| endonuclease IV [Saccharopolysp... 300 1e-79
gi|271970525|ref|YP_003344721.1| apurinic endonuclease Apn1 [Str... 295 5e-78
gi|238061880|ref|ZP_04606589.1| endonuclease IV [Micromonospora ... 294 7e-78
gi|331700358|ref|YP_004336597.1| Deoxyribonuclease IV [Pseudonoc... 292 3e-77
gi|302531294|ref|ZP_07283636.1| endonuclease IV [Streptomyces sp... 288 4e-76
gi|333922183|ref|YP_004495764.1| putative endonuclease IV [Amyco... 287 9e-76
gi|340532790|gb|AEK47995.1| deoxyribonuclease IV [Amycolatopsis ... 285 5e-75
gi|300791091|ref|YP_003771382.1| deoxyribonuclease IV [Amycolato... 285 5e-75
gi|256389569|ref|YP_003111133.1| endonuclease IV [Catenulispora ... 284 1e-74
gi|326329089|ref|ZP_08195418.1| AP endonuclease, family 2 [Nocar... 283 1e-74
gi|324998549|ref|ZP_08119661.1| endonuclease IV [Pseudonocardia ... 282 4e-74
gi|296271512|ref|YP_003654144.1| apurinic endonuclease Apn1 [The... 281 4e-74
gi|284034860|ref|YP_003384791.1| xylose isomerase domain-contain... 281 6e-74
gi|302870700|ref|YP_003839337.1| Xylose isomerase domain-contain... 281 7e-74
gi|336322166|ref|YP_004602134.1| xylose isomerase domain-contain... 281 8e-74
gi|84498623|ref|ZP_00997386.1| endonuclease IV [Janibacter sp. H... 280 1e-73
gi|23007412|ref|ZP_00049293.1| COG0648: Endonuclease IV [Magneto... 279 4e-73
gi|336120941|ref|YP_004575727.1| putative endonuclease IV [Micro... 278 7e-73
gi|229821166|ref|YP_002882692.1| endonuclease IV [Beutenbergia c... 278 8e-73
gi|296138173|ref|YP_003645416.1| xylose isomerase [Tsukamurella ... 275 4e-72
gi|257057873|ref|YP_003135705.1| Endonuclease IV [Saccharomonosp... 275 6e-72
gi|291303844|ref|YP_003515122.1| apurinic endonuclease Apn1 [Sta... 273 1e-71
gi|317126547|ref|YP_004100659.1| endonuclease IV [Intrasporangiu... 273 2e-71
gi|145597066|ref|YP_001161363.1| endonuclease IV [Salinispora tr... 273 3e-71
gi|330470803|ref|YP_004408546.1| endonuclease IV [Verrucosispora... 271 6e-71
gi|269958062|ref|YP_003327851.1| xylose isomerase domain-contain... 270 2e-70
gi|334338341|ref|YP_004543493.1| Deoxyribonuclease IV (phage-T(4... 269 2e-70
>gi|15607810|ref|NP_215184.1| endonuclease IV [Mycobacterium tuberculosis H37Rv]
gi|15840073|ref|NP_335110.1| endonuclease IV [Mycobacterium tuberculosis CDC1551]
gi|31791854|ref|NP_854347.1| endonuclease IV [Mycobacterium bovis AF2122/97]
69 more sequence titles
Length=252
Score = 506 bits (1304), Expect = 1e-141, Method: Compositional matrix adjust.
Identities = 251/252 (99%), Positives = 252/252 (100%), Gaps = 0/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL
Sbjct 1 MLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL
Sbjct 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI
Sbjct 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK
Sbjct 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
Query 241 DDIAFLRERTGS 252
DDIAFLRERTGS
Sbjct 241 DDIAFLRERTGS 252
>gi|340625689|ref|YP_004744141.1| putative endonuclease IV [Mycobacterium canettii CIPT 140010059]
gi|340003879|emb|CCC43010.1| putative endonuclease IV END (endodeoxyribonuclease IV) (apurinase)
[Mycobacterium canettii CIPT 140010059]
Length=252
Score = 500 bits (1287), Expect = 1e-139, Method: Compositional matrix adjust.
Identities = 247/252 (99%), Positives = 250/252 (99%), Gaps = 0/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHVSPTDPLAAA+AEGADVVQIFLGNPQSWKAPKPRDDAAALKAA LPIYVHAPYL
Sbjct 1 MLIGSHVSPTDPLAAADAEGADVVQIFLGNPQSWKAPKPRDDAAALKAANLPIYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL
Sbjct 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEAL DAVDRI
Sbjct 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALVDAVDRI 180
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KAITGRIDLVHCNDS+DEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK
Sbjct 181 KAITGRIDLVHCNDSKDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
Query 241 DDIAFLRERTGS 252
DDIAFLRERTGS
Sbjct 241 DDIAFLRERTGS 252
>gi|183981020|ref|YP_001849311.1| endonuclease IV (apurinase) [Mycobacterium marinum M]
gi|229634903|sp|B2HSJ8.1|END4_MYCMM RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease
IV; AltName: Full=Endonuclease IV
gi|183174346|gb|ACC39456.1| endonuclease IV (apurinase) [Mycobacterium marinum M]
Length=252
Score = 439 bits (1128), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 218/252 (87%), Positives = 238/252 (95%), Gaps = 0/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHVSP DPLAAA+AEGA+VVQIFLGNPQSWKAPKPR+DAA LKAA LPIYVHAPYL
Sbjct 1 MLIGSHVSPQDPLAAAQAEGAEVVQIFLGNPQSWKAPKPREDAAQLKAAALPIYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
INLASANN+VRIPSRKILQ+TC AAADIGAAAVIVHGGHVADDND+D+GFQRWRKALD+L
Sbjct 61 INLASANNKVRIPSRKILQQTCDAAADIGAAAVIVHGGHVADDNDLDEGFQRWRKALDQL 120
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+VPVYLENTAGG+HAMAR FDTIARLWDVIGDTGIGFCLDTCH WAAGE L VDRI
Sbjct 121 QTDVPVYLENTAGGEHAMARHFDTIARLWDVIGDTGIGFCLDTCHAWAAGEQLVHGVDRI 180
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KA+TGRIDLVHCNDSRD AGSGRDRHANLG+GQIDP+LLVAAV+AA AP+ICETA++GRK
Sbjct 181 KAVTGRIDLVHCNDSRDAAGSGRDRHANLGAGQIDPELLVAAVRAADAPIICETAEEGRK 240
Query 241 DDIAFLRERTGS 252
DDIAFLRE+ S
Sbjct 241 DDIAFLREKLNS 252
>gi|118616535|ref|YP_904867.1| endonuclease IV [Mycobacterium ulcerans Agy99]
gi|166224288|sp|A0PM27.1|END4_MYCUA RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease
IV; AltName: Full=Endonuclease IV
gi|118568645|gb|ABL03396.1| endonuclease iv (apurinase), End [Mycobacterium ulcerans Agy99]
Length=252
Score = 437 bits (1125), Expect = 6e-121, Method: Compositional matrix adjust.
Identities = 217/252 (87%), Positives = 238/252 (95%), Gaps = 0/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHVSP DPLAAA+AEGA+VVQIFLGNPQSWKAP+PR+DAA LKAA LPIYVHAPYL
Sbjct 1 MLIGSHVSPQDPLAAAQAEGAEVVQIFLGNPQSWKAPRPREDAAQLKAAALPIYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
INLASANN+VRIPSRKILQ+TC AAADIGAAAVIVHGGHVADDND+D+GFQRWRKALD+L
Sbjct 61 INLASANNKVRIPSRKILQQTCDAAADIGAAAVIVHGGHVADDNDLDEGFQRWRKALDQL 120
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+VPVYLENTAGG+HAMAR FDTIARLWDVIGDTGIGFCLDTCH WAAGE L VDRI
Sbjct 121 QTDVPVYLENTAGGEHAMARHFDTIARLWDVIGDTGIGFCLDTCHAWAAGEQLVHGVDRI 180
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KA+TGRIDLVHCNDSRD AGSGRDRHANLG+GQIDP+LLVAAV+AA AP+ICETA++GRK
Sbjct 181 KAVTGRIDLVHCNDSRDAAGSGRDRHANLGAGQIDPELLVAAVRAADAPIICETAEEGRK 240
Query 241 DDIAFLRERTGS 252
DDIAFLRE+ S
Sbjct 241 DDIAFLREKLNS 252
>gi|15828008|ref|NP_302271.1| endonuclease IV [Mycobacterium leprae TN]
gi|221230485|ref|YP_002503901.1| endonuclease IV [Mycobacterium leprae Br4923]
gi|399426|sp|P30770.1|END4_MYCLE RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease
IV; AltName: Full=Endonuclease IV
gi|254783113|sp|B8ZSC5.1|END4_MYCLB RecName: Full=Probable endonuclease 4; AltName: Full=Endodeoxyribonuclease
IV; AltName: Full=Endonuclease IV
gi|581336|emb|CAA78670.1| endonuclease [Mycobacterium leprae]
gi|13093561|emb|CAC30843.1| putataive endonuclease IV (apurinase) [Mycobacterium leprae]
gi|219933592|emb|CAR71985.1| putataive endonuclease IV (apurinase) [Mycobacterium leprae Br4923]
Length=252
Score = 422 bits (1085), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 214/250 (86%), Positives = 232/250 (93%), Gaps = 0/250 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHVS TDPLAAAE EGADVVQIFLGNPQSWKAP R DA LKA LP+YVHAPYL
Sbjct 1 MLIGSHVSSTDPLAAAEVEGADVVQIFLGNPQSWKAPTLRSDADVLKATALPVYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASAN+RVRIPSRKILQ+TC AAADIGAAAV+VHGG+VADDND++ GFQRWRKALD+L
Sbjct 61 INVASANSRVRIPSRKILQQTCDAAADIGAAAVVVHGGYVADDNDLEDGFQRWRKALDQL 120
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+VPVYLENTAGGDHAMARRFDTIARLWDVIG+TGIGFCLDTCH WAAGE L VDRI
Sbjct 121 QTDVPVYLENTAGGDHAMARRFDTIARLWDVIGETGIGFCLDTCHAWAAGEGLIHVVDRI 180
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KAITGRIDLVHCNDS+DEAGSGRDRHANLGSGQID +LLVAAVK AGAPVICETA++GRK
Sbjct 181 KAITGRIDLVHCNDSKDEAGSGRDRHANLGSGQIDAELLVAAVKVAGAPVICETAEEGRK 240
Query 241 DDIAFLRERT 250
DDIAFLRE+T
Sbjct 241 DDIAFLREKT 250
>gi|118466381|ref|YP_883635.1| endonuclease IV [Mycobacterium avium 104]
gi|118167668|gb|ABK68565.1| endonuclease IV [Mycobacterium avium 104]
Length=325
Score = 421 bits (1082), Expect = 6e-116, Method: Compositional matrix adjust.
Identities = 206/252 (82%), Positives = 223/252 (89%), Gaps = 1/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
VLIGSHV DPLAAA+A+GADVVQ FL NPQSWK P+PRDDA ALKA+++P+YVHAPYL
Sbjct 75 VLIGSHVRNDDPLAAAQADGADVVQFFLSNPQSWKKPQPRDDAEALKASSVPLYVHAPYL 134
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AAA+I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct 135 INVASANNRVRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDNDMEAGFERWVKALDYL 193
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ET+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct 194 ETDVQVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEALIDAVDRI 253
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLV VKAA APVICETAD+GRK
Sbjct 254 KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVTVVKAAAAPVICETADEGRK 313
Query 241 DDIAFLRERTGS 252
DDIAFLRE T S
Sbjct 314 DDIAFLREHTKS 325
>gi|315446021|ref|YP_004078900.1| endonuclease IV [Mycobacterium sp. Spyr1]
gi|315264324|gb|ADU01066.1| Endonuclease IV [Mycobacterium sp. Spyr1]
Length=250
Score = 417 bits (1072), Expect = 8e-115, Method: Compositional matrix adjust.
Identities = 206/250 (83%), Positives = 220/250 (88%), Gaps = 1/250 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAAEA+GADVVQ FLGNPQSWK P PRDDA LKAA++PIYVHAPYL
Sbjct 1 MLIGSHVHGDDPLAAAEADGADVVQFFLGNPQSWKKPPPRDDADVLKAASMPIYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AA+DIGA AVIVHGGH ADDND+D GF+RW KAL L
Sbjct 61 INVASANNRVRIPSRKILQDTCDAASDIGATAVIVHGGH-ADDNDMDAGFERWVKALASL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+VPVYLENTAGGDHAMAR FDTIARLWD IGD GIGFCLDTCH WAAGEAL DAV+RI
Sbjct 120 KTDVPVYLENTAGGDHAMARHFDTIARLWDHIGDMGIGFCLDTCHAWAAGEALIDAVERI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
K ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LLVA V AAGAPVICET+D GRK
Sbjct 180 KGITGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPQLLVAVVTAAGAPVICETSDDGRK 239
Query 241 DDIAFLRERT 250
DDIAFLRE
Sbjct 240 DDIAFLREHV 249
>gi|296168515|ref|ZP_06850331.1| family 2 AP endonuclease [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896693|gb|EFG76330.1| family 2 AP endonuclease [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=251
Score = 417 bits (1071), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 203/250 (82%), Positives = 221/250 (89%), Gaps = 1/250 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAAEA+GADVVQ FLGNPQSWK PKPRDDA LKA+ +P+YVHAPYL
Sbjct 1 MLIGSHVRNDDPLAAAEADGADVVQFFLGNPQSWKKPKPRDDAEVLKASAVPLYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNR+RIPSRKILQ+TC AAA I A AVIVHGGH ADDND++ GF RW KALD L
Sbjct 61 INVASANNRIRIPSRKILQDTCDAAAQINATAVIVHGGH-ADDNDMEAGFGRWVKALDYL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+VPVYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGE L DAVDRI
Sbjct 120 DTDVPVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEELVDAVDRI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
+A+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDP+LL A VKAAGAPVICETAD+GRK
Sbjct 180 RALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPELLAAVVKAAGAPVICETADEGRK 239
Query 241 DDIAFLRERT 250
DDIAFLRE+T
Sbjct 240 DDIAFLREKT 249
>gi|145225669|ref|YP_001136347.1| endonuclease IV [Mycobacterium gilvum PYR-GCK]
gi|145218155|gb|ABP47559.1| Endonuclease IV [Mycobacterium gilvum PYR-GCK]
Length=250
Score = 417 bits (1071), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 205/250 (82%), Positives = 221/250 (89%), Gaps = 1/250 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAAEA+GADVVQ FLGNPQSWK P PRDDA LKAA++PIYVHAPYL
Sbjct 1 MLIGSHVHGDDPLAAAEADGADVVQFFLGNPQSWKKPPPRDDADVLKAASMPIYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AA++IGA AVIVHGGH ADDND+D GF+RW KAL L
Sbjct 61 INVASANNRVRIPSRKILQDTCDAASEIGATAVIVHGGH-ADDNDMDAGFERWVKALASL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+VPVYLENTAGGDHAMAR FDTIARLWD IGD GIGFCLDTCH WAAGEAL DAV+RI
Sbjct 120 KTDVPVYLENTAGGDHAMARHFDTIARLWDHIGDMGIGFCLDTCHAWAAGEALVDAVERI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
K ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LLVA V AAGAPVICET+D+GRK
Sbjct 180 KGITGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPQLLVAVVTAAGAPVICETSDEGRK 239
Query 241 DDIAFLRERT 250
DDIAFLRE
Sbjct 240 DDIAFLREHV 249
>gi|120402272|ref|YP_952101.1| endonuclease IV [Mycobacterium vanbaalenii PYR-1]
gi|119955090|gb|ABM12095.1| Endonuclease IV [Mycobacterium vanbaalenii PYR-1]
Length=259
Score = 416 bits (1070), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 205/248 (83%), Positives = 222/248 (90%), Gaps = 1/248 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
VLIGSHV DPLAAAEA+GADVVQ FLGNPQSWK P PR+DA LKA+ +PIYVHAPYL
Sbjct 11 VLIGSHVHGDDPLAAAEADGADVVQFFLGNPQSWKKPPPREDAEVLKASPVPIYVHAPYL 70
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AA++IGA AVIVHGGH ADDND+D GF+RW KAL L
Sbjct 71 INVASANNRVRIPSRKILQDTCDAASEIGATAVIVHGGH-ADDNDMDAGFERWVKALASL 129
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+++VPVYLENTAGGDHAMAR FDTIARLWD IGDTGIGFCLDTCH WAAGEAL DAV+RI
Sbjct 130 KSDVPVYLENTAGGDHAMARHFDTIARLWDHIGDTGIGFCLDTCHAWAAGEALIDAVERI 189
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
K ITGRIDLVHCNDSRD AGSG DRHAN GSGQIDP LLVA VKAAGAPVICET+D+GRK
Sbjct 190 KGITGRIDLVHCNDSRDAAGSGADRHANFGSGQIDPQLLVAVVKAAGAPVICETSDEGRK 249
Query 241 DDIAFLRE 248
DDIAFLR+
Sbjct 250 DDIAFLRD 257
>gi|342858841|ref|ZP_08715495.1| endonuclease IV [Mycobacterium colombiense CECT 3035]
gi|342133082|gb|EGT86285.1| endonuclease IV [Mycobacterium colombiense CECT 3035]
Length=251
Score = 416 bits (1069), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 202/250 (81%), Positives = 224/250 (90%), Gaps = 1/250 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAA+A+GADVVQ FLGNPQSWK PKPRDDA ALKA+ +P+Y+HAPYL
Sbjct 1 MLIGSHVRNDDPLAAAQADGADVVQFFLGNPQSWKKPKPRDDAEALKASAVPLYIHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNR+RIPSRKILQ+TC AAA+I A AVIVHGGH ADD+D++ GF+RW KALD L
Sbjct 61 INVASANNRIRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDDDMEAGFERWVKALDYL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ET+VPVYLENTAGGDHAMAR FDTI +LWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct 120 ETDVPVYLENTAGGDHAMARYFDTIGKLWDHIGDKGIGFCLDTCHAWAAGEALIDAVDRI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
+A+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLVA V+AA APVICETAD+GRK
Sbjct 180 RALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVAVVEAADAPVICETADEGRK 239
Query 241 DDIAFLRERT 250
DDIAFLRE T
Sbjct 240 DDIAFLREHT 249
>gi|333989325|ref|YP_004521939.1| endonuclease IV (apurinase) [Mycobacterium sp. JDM601]
gi|333485293|gb|AEF34685.1| endonuclease IV (apurinase) [Mycobacterium sp. JDM601]
Length=252
Score = 414 bits (1064), Expect = 7e-114, Method: Compositional matrix adjust.
Identities = 212/252 (85%), Positives = 229/252 (91%), Gaps = 1/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV P +PLAAAEAEGAD VQIFLGNPQSWKAPKPR+DAA L+ A LPIYVHAPYL
Sbjct 1 MLIGSHVRPQNPLAAAEAEGADAVQIFLGNPQSWKAPKPREDAAQLREAALPIYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHV-ADDNDIDKGFQRWRKALDR 119
IN+AS NNRVRIPSRK+LQ+TC AAADIGA AVIVHGGHV ADD+D GF RWRKALD+
Sbjct 61 INVASPNNRVRIPSRKVLQQTCDAAADIGAVAVIVHGGHVTADDDDPLAGFVRWRKALDQ 120
Query 120 LETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDR 179
LET VPVYLENTAGGDHAMARRFDTIA LWD IGDTG+GFCLDTCHTWAAGE+L DAV+R
Sbjct 121 LETTVPVYLENTAGGDHAMARRFDTIATLWDHIGDTGVGFCLDTCHTWAAGESLPDAVER 180
Query 180 IKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGR 239
IKAITGRIDLVHCNDS+D AGSGRDRHAN G+GQIDPDLLVA V+AAGAPVICETA++GR
Sbjct 181 IKAITGRIDLVHCNDSKDAAGSGRDRHANFGTGQIDPDLLVAVVQAAGAPVICETAEEGR 240
Query 240 KDDIAFLRERTG 251
K DIAFLRER G
Sbjct 241 KADIAFLRERLG 252
>gi|254822771|ref|ZP_05227772.1| endonuclease IV [Mycobacterium intracellulare ATCC 13950]
Length=251
Score = 413 bits (1062), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 207/251 (83%), Positives = 224/251 (90%), Gaps = 1/251 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAA+A+GADVVQ FLGNPQSWK PKPRDDA ALKA+T+P+Y+HAPYL
Sbjct 1 MLIGSHVHQDDPLAAAQADGADVVQFFLGNPQSWKKPKPRDDAEALKASTIPLYIHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AAA I A AVIVHGGH ADDND+D GF+RW KALD L
Sbjct 61 INVASANNRVRIPSRKILQDTCDAAAAISATAVIVHGGH-ADDNDMDAGFERWVKALDYL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ET+VPVYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGE L DAVDRI
Sbjct 120 ETDVPVYLENTAGGDHAMARHFDTIGRLWDHIGDKGIGFCLDTCHAWAAGEQLIDAVDRI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDP+LL A VKAA APVICETAD+GRK
Sbjct 180 KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPELLAAVVKAADAPVICETADEGRK 239
Query 241 DDIAFLRERTG 251
DDIAFLRE+TG
Sbjct 240 DDIAFLREKTG 250
>gi|108797946|ref|YP_638143.1| endonuclease IV [Mycobacterium sp. MCS]
gi|119867042|ref|YP_936994.1| endonuclease IV [Mycobacterium sp. KMS]
gi|126433608|ref|YP_001069299.1| endonuclease IV [Mycobacterium sp. JLS]
gi|108768365|gb|ABG07087.1| Endonuclease IV [Mycobacterium sp. MCS]
gi|119693131|gb|ABL90204.1| Endonuclease IV [Mycobacterium sp. KMS]
gi|126233408|gb|ABN96808.1| Endonuclease IV [Mycobacterium sp. JLS]
Length=268
Score = 410 bits (1054), Expect = 9e-113, Method: Compositional matrix adjust.
Identities = 201/248 (82%), Positives = 219/248 (89%), Gaps = 1/248 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
VLIGSHV DPLAAAEA+GADVVQ FLG+PQSWK PKPR+DA LKA+++P+YVHAPYL
Sbjct 20 VLIGSHVRNDDPLAAAEADGADVVQFFLGDPQSWKKPKPREDAEVLKASSIPLYVHAPYL 79
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AAA++GA AVIVHGGH ADD D++ GF+RW KALDRL
Sbjct 80 INVASANNRVRIPSRKILQDTCDAAAEVGATAVIVHGGH-ADDKDMEAGFERWVKALDRL 138
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ET VPVYLENTAGG+HAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAV RI
Sbjct 139 ETTVPVYLENTAGGEHAMARYFDTIGRLWDHIGDYGIGFCLDTCHAWAAGEALVDAVSRI 198
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
K ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LLVA V+AA APVICET+D GRK
Sbjct 199 KRITGRIDLVHCNDSRDAAGSGADRHANFGNGQIDPQLLVAVVQAADAPVICETSDDGRK 258
Query 241 DDIAFLRE 248
DDIAFLRE
Sbjct 259 DDIAFLRE 266
>gi|41410230|ref|NP_963066.1| endonuclease IV [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399064|gb|AAS06682.1| End [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460548|gb|EGO39441.1| endonuclease IV [Mycobacterium avium subsp. paratuberculosis
S397]
Length=251
Score = 404 bits (1037), Expect = 8e-111, Method: Compositional matrix adjust.
Identities = 205/252 (82%), Positives = 222/252 (89%), Gaps = 1/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAA+A+GAD VQ FL NPQSWK PKPRDDA ALKA+++P+YVHAPYL
Sbjct 1 MLIGSHVRNDDPLAAAQADGADAVQFFLSNPQSWKKPKPRDDAEALKASSVPLYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AAA+I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct 61 INVASANNRVRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDNDMEAGFERWVKALDYL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ET+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct 120 ETDVQVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEALIDAVDRI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLV VKAA APVICETAD+GRK
Sbjct 180 KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVTVVKAAAAPVICETADEGRK 239
Query 241 DDIAFLRERTGS 252
DDIAFLRE T S
Sbjct 240 DDIAFLREHTKS 251
>gi|118468437|ref|YP_885769.1| endonuclease IV [Mycobacterium smegmatis str. MC2 155]
gi|118169724|gb|ABK70620.1| endonuclease IV [Mycobacterium smegmatis str. MC2 155]
Length=250
Score = 403 bits (1036), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 205/251 (82%), Positives = 222/251 (89%), Gaps = 1/251 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV TDPLAAA A+GADVVQ FLGNPQSWK PKPR+DA LKA+T+P+YVHAPYL
Sbjct 1 MLIGSHVDNTDPLAAAAADGADVVQFFLGNPQSWKKPKPREDAEVLKASTIPLYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AAA+IGA AVIVHGGH ADDND++ GF RW KALD L
Sbjct 61 INVASANNRVRIPSRKILQDTCDAAAEIGATAVIVHGGH-ADDNDMEAGFTRWVKALDAL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+VPVYLENTAGGDHAMAR FDTIARLWD IGD GIGFCLDTCH WAAGEAL DAV+RI
Sbjct 120 DTDVPVYLENTAGGDHAMARHFDTIARLWDHIGDKGIGFCLDTCHAWAAGEALIDAVERI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
K+ITGRIDLVHCNDSRD AGSG DRHAN G+GQIDP LL A VKAA APVICETA+ GRK
Sbjct 180 KSITGRIDLVHCNDSRDAAGSGADRHANFGAGQIDPQLLAAVVKAADAPVICETAEAGRK 239
Query 241 DDIAFLRERTG 251
DDIAFLRE G
Sbjct 240 DDIAFLREHAG 250
>gi|254776936|ref|ZP_05218452.1| endonuclease IV [Mycobacterium avium subsp. avium ATCC 25291]
Length=251
Score = 402 bits (1032), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 204/252 (81%), Positives = 222/252 (89%), Gaps = 1/252 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAA+A+GAD VQ FL NPQSWK P+PRDDA ALKA+++P+YVHAPYL
Sbjct 1 MLIGSHVRNDDPLAAAQADGADAVQFFLSNPQSWKKPQPRDDAEALKASSVPLYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNRVRIPSRKILQ+TC AAA+I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct 61 INVASANNRVRIPSRKILQDTCDAAAEINATAVIVHGGH-ADDNDMEAGFERWVKALDYL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
ET+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGEAL DAVDRI
Sbjct 120 ETDVQVYLENTAGGDHAMARHFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEALIDAVDRI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KA+TGRIDLVHCNDSRD AGSG DRHAN G+GQIDPDLLV VKAA APVICETAD+GRK
Sbjct 180 KALTGRIDLVHCNDSRDAAGSGADRHANFGTGQIDPDLLVTVVKAADAPVICETADEGRK 239
Query 241 DDIAFLRERTGS 252
DDIAFLRE T S
Sbjct 240 DDIAFLREHTKS 251
>gi|240167670|ref|ZP_04746329.1| endonuclease IV [Mycobacterium kansasii ATCC 12478]
Length=251
Score = 401 bits (1030), Expect = 5e-110, Method: Compositional matrix adjust.
Identities = 201/250 (81%), Positives = 221/250 (89%), Gaps = 1/250 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIGSHV DPLAAA+A+GADVVQ FLGNPQSWK PKPRDDA LKA+T+P+YVHAPYL
Sbjct 1 MLIGSHVHSDDPLAAAQADGADVVQFFLGNPQSWKKPKPRDDAETLKASTIPLYVHAPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+ASANNR+RIPSRKILQ+TC AAA I A AVIVHGGH ADDND++ GF+RW KALD L
Sbjct 61 INVASANNRIRIPSRKILQDTCDAAAAINATAVIVHGGH-ADDNDMEAGFERWLKALDYL 119
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
+T+V VYLENTAGGDHAMAR FDTI RLWD IGD GIGFCLDTCH WAAGE L DAVDRI
Sbjct 120 QTDVQVYLENTAGGDHAMARYFDTIGRLWDRIGDKGIGFCLDTCHAWAAGEQLIDAVDRI 179
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
KA+TGRIDLVHCNDSRD AGSG DRHAN+G+G+IDPD LVA VKAA APVICETAD+GRK
Sbjct 180 KALTGRIDLVHCNDSRDAAGSGADRHANIGNGRIDPDHLVAVVKAADAPVICETADEGRK 239
Query 241 DDIAFLRERT 250
DDIAFLRE+
Sbjct 240 DDIAFLREKV 249
>gi|253797612|ref|YP_003030613.1| endonuclease IV end [Mycobacterium tuberculosis KZN 1435]
gi|253319115|gb|ACT23718.1| endonuclease IV end [Mycobacterium tuberculosis KZN 1435]
gi|344218495|gb|AEM99125.1| endonuclease IV end [Mycobacterium tuberculosis CTRI-2]
Length=219
Score = 392 bits (1008), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 196/202 (98%), Positives = 198/202 (99%), Gaps = 1/202 (0%)
Query 52 PIYVHA-PYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF 110
P ++ A YLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF
Sbjct 18 PAHLRACAYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF 77
Query 111 QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG 170
QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG
Sbjct 78 QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG 137
Query 171 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 230
EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV
Sbjct 138 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 197
Query 231 ICETADQGRKDDIAFLRERTGS 252
ICETADQGRKDDIAFLRERTGS
Sbjct 198 ICETADQGRKDDIAFLRERTGS 219
>gi|289552926|ref|ZP_06442136.1| LOW QUALITY PROTEIN: endonuclease IV end [Mycobacterium tuberculosis
KZN 605]
gi|289437558|gb|EFD20051.1| LOW QUALITY PROTEIN: endonuclease IV end [Mycobacterium tuberculosis
KZN 605]
Length=230
Score = 392 bits (1006), Expect = 3e-107, Method: Compositional matrix adjust.
Identities = 196/202 (98%), Positives = 198/202 (99%), Gaps = 1/202 (0%)
Query 52 PIYVHA-PYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF 110
P ++ A YLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF
Sbjct 29 PAHLRACAYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGF 88
Query 111 QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG 170
QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG
Sbjct 89 QRWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAG 148
Query 171 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 230
EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV
Sbjct 149 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 208
Query 231 ICETADQGRKDDIAFLRERTGS 252
ICETADQGRKDDIAFLRERTGS
Sbjct 209 ICETADQGRKDDIAFLRERTGS 230
>gi|289760796|ref|ZP_06520174.1| endonuclease IV [Mycobacterium tuberculosis GM 1503]
gi|289708302|gb|EFD72318.1| endonuclease IV [Mycobacterium tuberculosis GM 1503]
gi|328457393|gb|AEB02816.1| endonuclease IV end [Mycobacterium tuberculosis KZN 4207]
Length=183
Score = 367 bits (943), Expect = 6e-100, Method: Compositional matrix adjust.
Identities = 182/183 (99%), Positives = 183/183 (100%), Gaps = 0/183 (0%)
Query 70 VRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLETEVPVYLE 129
+RIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLETEVPVYLE
Sbjct 1 MRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLETEVPVYLE 60
Query 130 NTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIKAITGRIDL 189
NTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIKAITGRIDL
Sbjct 61 NTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIKAITGRIDL 120
Query 190 VHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKDDIAFLRER 249
VHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKDDIAFLRER
Sbjct 121 VHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKDDIAFLRER 180
Query 250 TGS 252
TGS
Sbjct 181 TGS 183
>gi|269129135|ref|YP_003302505.1| xylose isomerase domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268314093|gb|ACZ00468.1| Xylose isomerase domain protein TIM barrel [Thermomonospora curvata
DSM 43183]
Length=256
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 148/250 (60%), Positives = 186/250 (75%), Gaps = 5/250 (2%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DPLA A A GA+VVQ FLG+PQ WK P + A L + + +Y+HAPY++N
Sbjct 3 IGAHVDQHDPLAGARAVGAEVVQFFLGDPQGWKKPVVPEAVAELDGSGVDVYIHAPYVVN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET 122
+A++NNR+R+PSR+IL E AAA IGA A+IVHGGHV +D + GF+ WRK +R++
Sbjct 63 VATSNNRIRVPSRRILSEQLQAAAQIGAKALIVHGGHVLSGDDPEVGFENWRKVFERIDC 122
Query 123 EVPVYLENTAGGDHAMARRFDTIARLWDVIG-----DTGIGFCLDTCHTWAAGEALTDAV 177
+P+Y+ENTAGG +AMARR D IARLW+V+G D +GFCLDTCH AAGE L D V
Sbjct 123 PIPIYIENTAGGGNAMARRLDRIARLWEVLGQVPGIDGKLGFCLDTCHAHAAGEELIDVV 182
Query 178 DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ 237
DRIKAITGRIDLVHCN+SRD GSG DRHANL SG ID +L+V+ V++AGAPV+ ET
Sbjct 183 DRIKAITGRIDLVHCNNSRDAFGSGADRHANLESGTIDTELIVSVVRSAGAPVVVETPPA 242
Query 238 GRKDDIAFLR 247
G+ DIA LR
Sbjct 243 GQAADIALLR 252
>gi|256381015|ref|YP_003104675.1| endonuclease IV [Actinosynnema mirum DSM 43827]
gi|255925318|gb|ACU40829.1| apurinic endonuclease Apn1 [Actinosynnema mirum DSM 43827]
Length=256
Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 151/250 (61%), Positives = 183/250 (74%), Gaps = 4/250 (1%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DPLAAA GA+VVQ FL +PQSWKAP A ALK + L ++VHAPYLIN
Sbjct 3 IGAHVRDDDPLAAAAERGAEVVQFFLSDPQSWKAPGAHQHARALKDSELDVFVHAPYLIN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET 122
+AS NNRVRIPSRK + + A AA++GA +IVHGGHV D+D D G WRK +R
Sbjct 63 VASLNNRVRIPSRKAVVQHAARAAEVGALGLIVHGGHVTKDDDPDDGIANWRKLFERQVD 122
Query 123 E----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
E VP+ +ENTAGGD+AMAR FD + RLWD +G+ G GFCLDTCH +AAGE L V+
Sbjct 123 EGGFGVPILIENTAGGDNAMARSFDRLGRLWDAVGEFGAGFCLDTCHAFAAGEDLVGVVE 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQG 238
R+KA+TGRIDLVH N+SRDE GS RDRHAN+ SG+IDP+ LVA +AGAPV+ ET G
Sbjct 183 RVKALTGRIDLVHLNNSRDEFGSSRDRHANVESGKIDPEQLVAVCASAGAPVLVETPGDG 242
Query 239 RKDDIAFLRE 248
+ DIA+LRE
Sbjct 243 QAADIAYLRE 252
>gi|134103773|ref|YP_001109434.1| endonuclease IV [Saccharopolyspora erythraea NRRL 2338]
gi|291007700|ref|ZP_06565673.1| endonuclease IV [Saccharopolyspora erythraea NRRL 2338]
gi|133916396|emb|CAM06509.1| endonuclease IV [Saccharopolyspora erythraea NRRL 2338]
Length=256
Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/254 (60%), Positives = 188/254 (75%), Gaps = 4/254 (1%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DP++AA GA+VVQ FL +PQ WKAPKP A L+ + L +++H+PY+IN
Sbjct 3 IGAHVRDDDPVSAAAERGAEVVQFFLSDPQGWKAPKPHPQADELRESDLAVFIHSPYVIN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE- 121
+AS NNR+RIPSRK++ + AAA +GA ++VHGGHV D+D +G WRK +R
Sbjct 63 VASLNNRIRIPSRKLVTQHAKAAAAVGAQGLVVHGGHVTKDDDPAEGVANWRKMFERQAD 122
Query 122 ---TEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
EVPV +ENTAGG +AMARRFD +ARLWD +G+ G GFCLDTCH AAGE L D VD
Sbjct 123 EGGFEVPVLIENTAGGANAMARRFDALARLWDAVGEFGAGFCLDTCHAHAAGEELLDVVD 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQG 238
R+K ITGRIDLVH NDSRD GS RDRHAN+G+G+IDP+LLVA +AGAPV+ ET +G
Sbjct 183 RVKTITGRIDLVHLNDSRDGFGSSRDRHANIGAGEIDPELLVAVCSSAGAPVVVETPGEG 242
Query 239 RKDDIAFLRERTGS 252
+ DDIA+LRER S
Sbjct 243 QADDIAYLRERCPS 256
>gi|271970525|ref|YP_003344721.1| apurinic endonuclease Apn1 [Streptosporangium roseum DSM 43021]
gi|270513700|gb|ACZ91978.1| apurinic endonuclease Apn1 [Streptosporangium roseum DSM 43021]
Length=252
Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/247 (58%), Positives = 183/247 (75%), Gaps = 1/247 (0%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DPL A A A+V Q FLG+PQ WK P + ++ + + +Y+HAPY+IN
Sbjct 4 IGAHVDQDDPLTHARARDAEVAQFFLGDPQGWKGPVIGEKTPEIRDSGVDVYIHAPYVIN 63
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET 122
+A+ANNR+RIPSRK+L AAAA++GA +IVHGGHV +D KGF WRK +RLE
Sbjct 64 VATANNRIRIPSRKLLSSNLAAAAELGAKGLIVHGGHVGAGDDPQKGFDNWRKVFERLEE 123
Query 123 -EVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRIK 181
EVPV +ENTAGG +AMAR+ + IARLWD + +GFCLDTCH AAGE L D V+RI
Sbjct 124 HEVPVLIENTAGGGNAMARKLERIARLWDALDGFDVGFCLDTCHAHAAGEELADVVERIM 183
Query 182 AITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRKD 241
AITGRIDLVHCNDSRD AGSG DRHANLG+G+ID +L+++ ++AGAP++ ET +G+ +
Sbjct 184 AITGRIDLVHCNDSRDAAGSGADRHANLGAGRIDTELILSVCRSAGAPIVVETPFEGQAE 243
Query 242 DIAFLRE 248
DI+ LR+
Sbjct 244 DISLLRK 250
>gi|238061880|ref|ZP_04606589.1| endonuclease IV [Micromonospora sp. ATCC 39149]
gi|237883691|gb|EEP72519.1| endonuclease IV [Micromonospora sp. ATCC 39149]
Length=263
Score = 294 bits (753), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/255 (59%), Positives = 183/255 (72%), Gaps = 6/255 (2%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DPL+ A + A+ VQ FL +PQ WKAPKPR+DA L+AA + +YVHAPY+IN
Sbjct 3 IGAHVDSADPLSEATSRAAEAVQFFLSDPQGWKAPKPREDADRLRAAEIDLYVHAPYVIN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRK----ALD 118
+A+ NNR+RIPSRK+L AAA+IGA +IVHGGHV +D+ GF WRK A D
Sbjct 63 VATLNNRIRIPSRKLLLGHATAAAEIGAKGLIVHGGHVNAGDDLAVGFDNWRKTFAYAAD 122
Query 119 RLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
VPV +ENTAGGD+A ARR D +ARLWD +G+ +GFCLDTCH A GE L VD
Sbjct 123 AGGFAVPVLIENTAGGDNACARRLDALARLWDALGEYEVGFCLDTCHAHAGGEELLGLVD 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICET--AD 236
R+KAITGRIDLVH N+S+D GSGRDRH NL G IDP+L+VA ++AAGAP I ET
Sbjct 183 RVKAITGRIDLVHANNSKDTFGSGRDRHDNLDGGTIDPELVVAVIRAAGAPAIVETPGGA 242
Query 237 QGRKDDIAFLRERTG 251
G+ DIAFLR+R G
Sbjct 243 DGQGADIAFLRDRLG 257
>gi|331700358|ref|YP_004336597.1| Deoxyribonuclease IV [Pseudonocardia dioxanivorans CB1190]
gi|326955047|gb|AEA28744.1| Deoxyribonuclease IV (phage-T(4)-induced) [Pseudonocardia dioxanivorans
CB1190]
Length=256
Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/255 (58%), Positives = 185/255 (73%), Gaps = 4/255 (1%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIG+HV DP+ AA GADVVQIFL +PQ WK P A L++ L + VH+PY+
Sbjct 1 MLIGAHVRDDDPVGAAAERGADVVQIFLSDPQGWKKPPAHPQAEQLRSGDLTVVVHSPYV 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
+N+AS NNR+RIPSRK++ + A AA++GA ++VHGGHV +D GF+ WRK ++R
Sbjct 61 VNVASPNNRIRIPSRKLVVQHAAEAANVGAIGLVVHGGHVTQKDDPAVGFENWRKFVERQ 120
Query 121 ETE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA 176
+ E VPV++ENTAGGD+AMAR FD +ARLWD +G+ G+GFCLDTCH +AAGE L D
Sbjct 121 QDEGGFAVPVFIENTAGGDNAMARSFDALARLWDAVGEFGVGFCLDTCHAFAAGEDLVDV 180
Query 177 VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETAD 236
VDR KAITGRIDLVH N+SRDE GS RDRHAN+ SG ID L A AAGAP++ ET
Sbjct 181 VDRAKAITGRIDLVHLNNSRDEFGSARDRHANIDSGTIDAGQLAAVAAAAGAPIVVETPA 240
Query 237 QGRKDDIAFLRERTG 251
+G+ DI FLRER G
Sbjct 241 EGQAADITFLRERLG 255
>gi|302531294|ref|ZP_07283636.1| endonuclease IV [Streptomyces sp. AA4]
gi|302440189|gb|EFL12005.1| endonuclease IV [Streptomyces sp. AA4]
Length=257
Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/254 (57%), Positives = 182/254 (72%), Gaps = 8/254 (3%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DPLAA ADVVQ FL +PQ WKAPKP +KA+ + +++HAPYLIN
Sbjct 3 IGAHVRDDDPLAAVAEREADVVQFFLSDPQGWKAPKPHPHGEEIKASPVEVFIHAPYLIN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET 122
+AS NNR+RIPSRK + + AA IGA +IVHGGHV +D+++G WRK +R E
Sbjct 63 VASKNNRIRIPSRKNVTQHADGAAAIGAKGLIVHGGHVGAGDDVEEGLVNWRKLFER-EA 121
Query 123 E-----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV 177
E VP+ +ENTAGGD+AM R D IARLWD +G+ G GFCLDTCH +AAG L AV
Sbjct 122 EKGGFAVPILIENTAGGDNAMTRELDVIARLWDKVGEFGAGFCLDTCHAYAAGWDLETAV 181
Query 178 DRIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICETA 235
+++KAITGRIDLVHCN+SRDE GS RDRHA++ G G I+P+LL V+ AGAPV+ ET
Sbjct 182 EKVKAITGRIDLVHCNNSRDEHGSNRDRHASVVDGDGTIEPELLAEVVRQAGAPVVVETP 241
Query 236 DQGRKDDIAFLRER 249
+G+ DIA+LR++
Sbjct 242 GKGQAADIAYLRKQ 255
>gi|333922183|ref|YP_004495764.1| putative endonuclease IV [Amycolicicoccus subflavus DQS3-9A1]
gi|333484404|gb|AEF42964.1| Putative endonuclease IV [Amycolicicoccus subflavus DQS3-9A1]
Length=263
Score = 287 bits (735), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 142/251 (57%), Positives = 181/251 (73%), Gaps = 5/251 (1%)
Query 3 IGSHVSP-TDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLI 61
IG+HV DPL +A+ GA+VVQ+F+ +PQ W PKP A L+ + + + VH+ Y+I
Sbjct 3 IGAHVRDDADPLGSAQRYGAEVVQLFVTDPQKWNKPKPHPQADQLRKSGIDVVVHSSYVI 62
Query 62 NLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE 121
N+AS NNR+RIPSRK +Q+ AAA+ GA ++VHGGHV +++GF WRK +R +
Sbjct 63 NVASLNNRIRIPSRKAVQQQATAAAEFGAFGLVVHGGHVRQGEAVEEGFTNWRKLFERQD 122
Query 122 TE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV 177
E VP+ +ENTAGGD AM+R FD+IARLWD +G+ G GFCLDTCH WAAGE L DAV
Sbjct 123 DEGGFAVPILIENTAGGDSAMSRYFDSIARLWDHVGEFGAGFCLDTCHAWAAGENLVDAV 182
Query 178 DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ 237
+RI++ITGRIDLVH N+SRDE S RDRHANL G IDP LL V+ AGAPV+ ET +
Sbjct 183 ERIRSITGRIDLVHLNNSRDEFNSARDRHANLADGTIDPQLLTEVVRQAGAPVVLETPAE 242
Query 238 GRKDDIAFLRE 248
G +DDI FLRE
Sbjct 243 GLEDDIEFLRE 253
>gi|340532790|gb|AEK47995.1| deoxyribonuclease IV [Amycolatopsis mediterranei S699]
Length=257
Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/257 (56%), Positives = 181/257 (71%), Gaps = 6/257 (2%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIG+HV DPL A A+VVQ FL +PQ WKAPKP A+KA + +++H+PYL
Sbjct 1 MLIGAHVRDDDPLPAVVERKAEVVQFFLSDPQGWKAPKPHPHGEAIKADPVEVFIHSPYL 60
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+AS NNR+RIPSRK + + AA IGA +IVHGGHV ++D + G WRK +R
Sbjct 61 INVASLNNRIRIPSRKNVTQHADGAAAIGAKGLIVHGGHVGANDDAEAGLDNWRKLFERE 120
Query 121 ET----EVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA 176
+ +VP+ +ENTAGG++AM R D IARLWD +G+ G GFCLDTCH +AAG L A
Sbjct 121 QEKGGFKVPILIENTAGGENAMTRDLDVIARLWDKVGEFGAGFCLDTCHAFAAGWDLATA 180
Query 177 VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICET 234
V R+KAITGRIDLVH N+SRDE GS RDRHAN+ G G IDP++LVA + AGAPV+ ET
Sbjct 181 VGRVKAITGRIDLVHLNNSRDEFGSTRDRHANVVQGDGTIDPEVLVAVAREAGAPVVVET 240
Query 235 ADQGRKDDIAFLRERTG 251
G+ DIA+LRE+ G
Sbjct 241 PADGQAADIAYLREQLG 257
>gi|300791091|ref|YP_003771382.1| deoxyribonuclease IV [Amycolatopsis mediterranei U32]
gi|299800605|gb|ADJ50980.1| deoxyribonuclease IV [Amycolatopsis mediterranei U32]
Length=260
Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/257 (56%), Positives = 181/257 (71%), Gaps = 6/257 (2%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
+LIG+HV DPL A A+VVQ FL +PQ WKAPKP A+KA + +++H+PYL
Sbjct 4 MLIGAHVRDDDPLPAVVERKAEVVQFFLSDPQGWKAPKPHPHGEAIKADPVEVFIHSPYL 63
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
IN+AS NNR+RIPSRK + + AA IGA +IVHGGHV ++D + G WRK +R
Sbjct 64 INVASLNNRIRIPSRKNVTQHADGAAAIGAKGLIVHGGHVGANDDAEAGLDNWRKLFERE 123
Query 121 ET----EVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA 176
+ +VP+ +ENTAGG++AM R D IARLWD +G+ G GFCLDTCH +AAG L A
Sbjct 124 QEKGGFKVPILIENTAGGENAMTRDLDVIARLWDKVGEFGAGFCLDTCHAFAAGWDLATA 183
Query 177 VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICET 234
V R+KAITGRIDLVH N+SRDE GS RDRHAN+ G G IDP++LVA + AGAPV+ ET
Sbjct 184 VGRVKAITGRIDLVHLNNSRDEFGSTRDRHANVVQGDGTIDPEVLVAVAREAGAPVVVET 243
Query 235 ADQGRKDDIAFLRERTG 251
G+ DIA+LRE+ G
Sbjct 244 PADGQAADIAYLREQLG 260
>gi|256389569|ref|YP_003111133.1| endonuclease IV [Catenulispora acidiphila DSM 44928]
gi|256355795|gb|ACU69292.1| apurinic endonuclease Apn1 [Catenulispora acidiphila DSM 44928]
Length=262
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/257 (58%), Positives = 180/257 (71%), Gaps = 9/257 (3%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALKAAT----LPIYVH 56
IGSHV DP+A A A GAD VQIFLG+PQSWKAP A+AL+AA + +YVH
Sbjct 5 IGSHVGNEDPIAEAVARGADAVQIFLGDPQSWKAPTVAYPGGASALRAAAEQADVAVYVH 64
Query 57 APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA 116
A Y+IN+A+ NNR+RIPSRK+LQ+T A AA+ GA V+VHGGH + D GF WRKA
Sbjct 65 AAYIINVAATNNRIRIPSRKLLQQTVALAAEAGARGVVVHGGHSTAADAPDAGFDNWRKA 124
Query 117 LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDA 176
+D+LE PV++ENTAGGDHAMARR D IA+LWD +G +GIG CLDTCH +A G L A
Sbjct 125 VDQLEQHCPVFIENTAGGDHAMARRIDAIAKLWDAVGHSGIGLCLDTCHAFAGGIPLESA 184
Query 177 VDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDP-DLLVAAVKAAGAPVICET- 234
V IKA+TGR+DLVH NDS+ SG DRHAN GSG+I P DL+ + AG P ICET
Sbjct 185 VADIKAVTGRVDLVHANDSQGGFDSGIDRHANFGSGEIAPADLIAQVIAEAGCPAICETP 244
Query 235 -ADQGRKDDIAFLRERT 250
+ + DI +LRER
Sbjct 245 GGAEAQAADIKWLRERV 261
>gi|326329089|ref|ZP_08195418.1| AP endonuclease, family 2 [Nocardioidaceae bacterium Broad-1]
gi|325953171|gb|EGD45182.1| AP endonuclease, family 2 [Nocardioidaceae bacterium Broad-1]
Length=264
Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/261 (57%), Positives = 183/261 (71%), Gaps = 12/261 (4%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAP--KPRDDAAALKA----ATLPIY 54
V IG+HV TDP+A A A GA +VQ FLG+PQS+K P + AAALKA A + +Y
Sbjct 3 VAIGAHVDQTDPVAEATARGASLVQFFLGDPQSYKGPVVTYAEGAAALKARAEEAGVDLY 62
Query 55 VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR 114
VHAPY+IN+A+ NNR+RIPSRK+LQ+ AA++GA +IVHGGHV D+D KGF WR
Sbjct 63 VHAPYIINVATTNNRIRIPSRKLLQQHMDTAAEVGAKGLIVHGGHVNKDDDPAKGFDNWR 122
Query 115 KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI----GDTGIGFCLDTCHTWAAG 170
KA++ + +VP+ +ENTAGGD+AMAR D IA +W+ I G +GFCLDTCH A G
Sbjct 123 KAIEATDIKVPLLIENTAGGDNAMARYLDRIAGVWEAISTAEGAENVGFCLDTCHAHAGG 182
Query 171 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 230
L V+ ++ ITGRIDLVHCNDSRDE SG DRHAN G+G+IDPDLL V+ AGAPV
Sbjct 183 NPLETVVEDVRKITGRIDLVHCNDSRDEFDSGADRHANFGAGRIDPDLLAGVVRDAGAPV 242
Query 231 ICETADQG--RKDDIAFLRER 249
ICET D A+LRER
Sbjct 243 ICETPGGAAEHTSDFAWLRER 263
>gi|324998549|ref|ZP_08119661.1| endonuclease IV [Pseudonocardia sp. P1]
Length=257
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/251 (57%), Positives = 176/251 (71%), Gaps = 5/251 (1%)
Query 3 IGSHV-SPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLI 61
IG+HV DPLA A GA+V+Q+FL +PQ WK P P AA L A+ + + VHAPY
Sbjct 3 IGAHVRDAEDPLAEAGEVGAEVIQLFLSDPQGWKKPPPHPRAAELAASEVAVVVHAPYTA 62
Query 62 NLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE 121
N+AS NNR+RIPSRKI+Q+ A AA++GA ++VHGGHV D+D G WRK ++R
Sbjct 63 NVASTNNRIRIPSRKIVQQHLAGAAEVGAFGLVVHGGHVTKDDDPATGVDNWRKFVERQA 122
Query 122 TE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV 177
E VPV +ENTAGGD+AMARRFD + RLWD +G+ G+GFCLDTCH +A GE L V
Sbjct 123 GEHGFDVPVLIENTAGGDNAMARRFDALGRLWDAVGEFGVGFCLDTCHAFAGGEELAGLV 182
Query 178 DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ 237
+R +AITGRIDL+H N SRD S RDRHAN+ SG I PD L A V AGAPV+ ET +
Sbjct 183 ERARAITGRIDLIHLNSSRDPFDSARDRHANIDSGTIPPDELAAVVAEAGAPVVVETPAE 242
Query 238 GRKDDIAFLRE 248
G+ DIA+LRE
Sbjct 243 GQARDIAWLRE 253
>gi|296271512|ref|YP_003654144.1| apurinic endonuclease Apn1 [Thermobispora bispora DSM 43833]
gi|296094299|gb|ADG90251.1| apurinic endonuclease Apn1 [Thermobispora bispora DSM 43833]
Length=266
Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/252 (58%), Positives = 180/252 (72%), Gaps = 5/252 (1%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DPLA A ADVVQ FLG+PQ WK P A AL+ + + +Y+HAPY+IN
Sbjct 10 IGAHVDQDDPLAHAAELDADVVQFFLGDPQGWKGPVLPATAGALRESGVDVYIHAPYVIN 69
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET 122
+ASANNR+RIPSRK+L+ AAA +GA ++VHGGHV +D GF WRK +R+
Sbjct 70 VASANNRIRIPSRKLLERHLEAAAALGAKGLVVHGGHVTAGDDPQTGFDNWRKVFERIAC 129
Query 123 EVPVYLENTAGGDHAMARRFDTIARLWDVIG-----DTGIGFCLDTCHTWAAGEALTDAV 177
+P+ +ENTAGG +AMAR D IARLWD + + +GFCLDTCH A GE L+ V
Sbjct 130 PIPILIENTAGGGNAMARTLDRIARLWDAVTAGAPDPSVVGFCLDTCHFHAGGEELSGLV 189
Query 178 DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ 237
DR+KAITGRIDLVHCNDSRD GSG DRHAN+G G+IDP+ LV +AAGAP++ ET
Sbjct 190 DRVKAITGRIDLVHCNDSRDAFGSGADRHANIGEGRIDPEALVEVCRAAGAPIVVETPPA 249
Query 238 GRKDDIAFLRER 249
G++DDIAFLR+R
Sbjct 250 GQRDDIAFLRKR 261
>gi|284034860|ref|YP_003384791.1| xylose isomerase domain-containing protein [Kribbella flavida
DSM 17836]
gi|283814153|gb|ADB35992.1| Xylose isomerase domain protein TIM barrel [Kribbella flavida
DSM 17836]
Length=267
Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 146/263 (56%), Positives = 180/263 (69%), Gaps = 14/263 (5%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALK----AATLPIYVH 56
+G+HV DP A A GAD+VQ FLG+PQ WK PK D A ALK A + +YVH
Sbjct 5 LGAHVDQEDPPAEAADRGADLVQFFLGDPQGWKGPKVSYADGAEALKERAEAVGVDLYVH 64
Query 57 APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA 116
APY++N+A+ NNR+RIPSRK+LQ+T AA+IGA VIVHGGHV +D + GF WRK
Sbjct 65 APYVLNVATLNNRIRIPSRKLLQQTLDKAAEIGARGVIVHGGHVGKGDDPEAGFDNWRKC 124
Query 117 LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG------IGFCLDTCHTWAAG 170
++R E VP+ +ENTAGGD+AMAR D I RLW + D+G +GFCLDTCH A G
Sbjct 125 IERSELPVPLLIENTAGGDNAMARHLDRIGRLWQAVQDSGNEHVDRVGFCLDTCHFHAGG 184
Query 171 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 230
E L VD+++AITGRIDLVH N SRD GSG DRH+N G+IDP +VA VK AGAPV
Sbjct 185 EELATVVDKVRAITGRIDLVHANGSRDAFGSGADRHSNFAEGEIDPADIVAVVKTAGAPV 244
Query 231 ICET--ADQGRKDDIAFLRERTG 251
+ ET A+ G+K DI +LR G
Sbjct 245 VVETPNAEHGQKADIDYLRAHLG 267
>gi|302870700|ref|YP_003839337.1| Xylose isomerase domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|315506937|ref|YP_004085824.1| xylose isomerase domain-containing protein [Micromonospora sp.
L5]
gi|302573559|gb|ADL49761.1| Xylose isomerase domain-containing protein TIM barrel [Micromonospora
aurantiaca ATCC 27029]
gi|315413556|gb|ADU11673.1| Xylose isomerase domain-containing protein TIM barrel [Micromonospora
sp. L5]
Length=260
Score = 281 bits (718), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/256 (59%), Positives = 187/256 (74%), Gaps = 6/256 (2%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV PTDPLA A A A+ VQ FL +PQ WKAPKPR+DA L++A + +YVHAPY+IN
Sbjct 3 IGAHVDPTDPLAEAAARQAEAVQFFLADPQGWKAPKPREDAERLRSADVDLYVHAPYVIN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRK----ALD 118
+A+ NNR+RIPSRK+L +AAAD+GA +IVHGGHV +D+ GF WRK A D
Sbjct 63 VATLNNRIRIPSRKLLLAHASAAADVGARGLIVHGGHVNAGHDVAVGFDNWRKTFAYAAD 122
Query 119 RLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
+PV +ENTAGGD+A AR D++ARLWD +GD +GFCLDTCH +A GE L VD
Sbjct 123 SGGFPLPVLIENTAGGDNACARHLDSLARLWDALGDHEVGFCLDTCHAYAGGEELLGLVD 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETAD-- 236
R+KAITGRIDL+H N+S+ SG+DRH NL G IDP+LLVA ++AAGAPVI ET
Sbjct 183 RVKAITGRIDLIHANNSKGAFNSGQDRHDNLTGGTIDPELLVAVIRAAGAPVIVETPGGV 242
Query 237 QGRKDDIAFLRERTGS 252
+G+ DIAFLR + G+
Sbjct 243 EGQAADIAFLRGQLGA 258
>gi|336322166|ref|YP_004602134.1| xylose isomerase domain-containing protein [Cellvibrio gilvus
ATCC 13127]
gi|336105747|gb|AEI13566.1| Xylose isomerase domain-containing protein TIM barrel [Cellvibrio
gilvus ATCC 13127]
Length=259
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 139/247 (57%), Positives = 172/247 (70%), Gaps = 0/247 (0%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYL 60
VLIG+HV DP+ A A VQIFL +PQ WK P PR+DA AL + L +YVHAPYL
Sbjct 8 VLIGAHVRDDDPVGTAPQIDAQCVQIFLADPQGWKKPVPREDAQALLDSGLGVYVHAPYL 67
Query 61 INLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL 120
+N+AS NNRVRIPSR ++ + AAAA +GA ++VHGGHV D +D+ G + WRK +R
Sbjct 68 VNVASTNNRVRIPSRTMVAQHSAAAAVLGARGLVVHGGHVGDGDDVAVGVENWRKLFERA 127
Query 121 ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVDRI 180
V V +ENTAGG++A AR D +A LWD IG +G CLDTCH WAAGE L VDR+
Sbjct 128 TFGVRVLVENTAGGENACARSLDRLAMLWDAIGGYDVGLCLDTCHAWAAGEDLETVVDRV 187
Query 181 KAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQGRK 240
+AITGRIDLVH N SRDEAGSGRDRHAN +G I P+L+ V+ AG + ET + +
Sbjct 188 RAITGRIDLVHANSSRDEAGSGRDRHANFATGTIPPELIAHVVREAGCDALVETPAERQA 247
Query 241 DDIAFLR 247
+DIAFLR
Sbjct 248 EDIAFLR 254
>gi|84498623|ref|ZP_00997386.1| endonuclease IV [Janibacter sp. HTCC2649]
gi|84381156|gb|EAP97041.1| endonuclease IV [Janibacter sp. HTCC2649]
Length=264
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/261 (56%), Positives = 183/261 (71%), Gaps = 12/261 (4%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALKA----ATLPIY 54
+ IG+HV TDPLA A A G +VQ FLG+PQ +K P+ R AA L+A A + +Y
Sbjct 3 LTIGAHVDQTDPLAEAAARGTTLVQFFLGDPQGYKGPEIRYAGGAAGLRADAEAAGIALY 62
Query 55 VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR 114
VHAPY+IN+A+ NNR+RIPSRK+LQ+ AAA+IGA +IVHGGHV +D + GF WR
Sbjct 63 VHAPYIINVATTNNRIRIPSRKLLQQHVDAAAEIGAKGLIVHGGHVGKTDDPEVGFDNWR 122
Query 115 KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG----IGFCLDTCHTWAAG 170
KA++ + ++P+ LENTAGGD+AMAR + IA++WD IG +GFCLDTCH A G
Sbjct 123 KAIEATDLKLPLLLENTAGGDNAMARYLERIAKVWDAIGSASQADQVGFCLDTCHAHAGG 182
Query 171 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 230
L VD I AITGRIDLVHCNDSRD SG DRHAN G+GQID DLL V++AGAPV
Sbjct 183 NKLDTVVDDILAITGRIDLVHCNDSRDAFDSGADRHANFGAGQIDADLLAGVVRSAGAPV 242
Query 231 ICET--ADQGRKDDIAFLRER 249
+CET + + D A+LR+R
Sbjct 243 VCETPGGAEEHQADFAWLRDR 263
>gi|23007412|ref|ZP_00049293.1| COG0648: Endonuclease IV [Magnetospirillum magnetotacticum MS-1]
Length=260
Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/260 (58%), Positives = 183/260 (71%), Gaps = 13/260 (5%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPR--DDAAALK----AATLPIYVH 56
IG+H+ +D +A A + GADV QIFLG+PQSWK P+ A ALK AA L + VH
Sbjct 3 IGAHLDQSDVIAQAASIGADVAQIFLGDPQSWKGPEFTFPGGAEALKDAATAADLELVVH 62
Query 57 APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA 116
APY+IN+AS NNR+RIPSRK+LQ+ AA +GA V+VHGGHV D KGF WRKA
Sbjct 63 APYVINVASPNNRIRIPSRKLLQQIVDGAAAVGATGVVVHGGHVTAKEDPAKGFDNWRKA 122
Query 117 LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI----GDTGIGFCLDTCHTWAAGEA 172
+D L+T+V VY+ENTAGGD +MARR D I LW + G +GFCLDTCH WA G
Sbjct 123 IDALQTDVTVYIENTAGGDFSMARRLDRIEGLWAAVQQADGAENVGFCLDTCHAWAGGID 182
Query 173 LTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVIC 232
LT AVD ++AITGR+DLVH N+SRD AGSG DRHA L +G IDP+LL+ V+AAG V+C
Sbjct 183 LTTAVDDVRAITGRVDLVHLNNSRDTAGSGADRHAGLTAGTIDPELLLGVVRAAGTSVVC 242
Query 233 ET-ADQGRKDDIAFLRERTG 251
ET AD D+A+LRE+ G
Sbjct 243 ETHADV--PADVAWLREQVG 260
>gi|336120941|ref|YP_004575727.1| putative endonuclease IV [Microlunatus phosphovorus NM-1]
gi|334688739|dbj|BAK38324.1| putative endonuclease IV [Microlunatus phosphovorus NM-1]
Length=266
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 147/264 (56%), Positives = 181/264 (69%), Gaps = 14/264 (5%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPK--PRDDAAALKAAT----LPIY 54
+ IG H DP+A A+A GAD+ Q FLG+PQ WK P+ A ALK A + +Y
Sbjct 4 IRIGGHGEQEDPIAEAKARGADLAQFFLGDPQGWKGPEIAYPGGAEALKQAAAEADIALY 63
Query 55 VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR 114
VHAPY++N+A+ NNR+RIPSRK LQ+ AAA+IGAA VIVHGGHV ++D KGF WR
Sbjct 64 VHAPYVLNVATTNNRIRIPSRKFLQQYLNAAAEIGAAGVIVHGGHVLKNDDPAKGFDNWR 123
Query 115 KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI-----GDTGIGFCLDTCHTWAA 169
K ++ LE VP+ +ENTAGGD AMARR + I RLWD + GDT +GFCLDTCH A
Sbjct 124 KCIESLEMPVPLLIENTAGGDQAMARRMERIERLWDAVTSATGGDT-VGFCLDTCHAHAG 182
Query 170 GEALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAP 229
G L +AV R+ ITGRIDLVHCN+SRD SG DRHANL G+IDPD L+A + AAGAP
Sbjct 183 GIVLAEAVARVLEITGRIDLVHCNNSRDGFDSGADRHANLEDGEIDPDALLAVISAAGAP 242
Query 230 VICETAD--QGRKDDIAFLRERTG 251
V+ ET G+ DI++LR G
Sbjct 243 VVVETPGGLAGQAADISWLRRHLG 266
>gi|229821166|ref|YP_002882692.1| endonuclease IV [Beutenbergia cavernae DSM 12333]
gi|229567079|gb|ACQ80930.1| Xylose isomerase domain protein TIM barrel [Beutenbergia cavernae
DSM 12333]
Length=260
Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 140/260 (54%), Positives = 182/260 (70%), Gaps = 13/260 (5%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKP--RDDAAALKAAT----LPIYVH 56
IG+HV +DP+ A A GAD+VQIFLG+PQSWK P A AL+AAT + +YVH
Sbjct 3 IGAHVDQSDPVTQARAIGADIVQIFLGDPQSWKVTGPDYPGGAEALRAATEEAGIDVYVH 62
Query 57 APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA 116
APY+IN+AS NNR+RIPSRK LQ AA +GA V+VHGGHV D+ G+ WRKA
Sbjct 63 APYVINVASPNNRIRIPSRKQLQGVVHEAAKVGAKGVVVHGGHVTAGTDLAVGYDNWRKA 122
Query 117 LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDT----GIGFCLDTCHTWAAGEA 172
+D+L+ VP+++ENTAGG+H+MARR ++IARLWD +G +GFCLDTCH WA G
Sbjct 123 IDQLDAPVPIFIENTAGGEHSMARRLESIARLWDAVGQADGGDAVGFCLDTCHAWAGGID 182
Query 173 LTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVIC 232
L DAV++++ ITGR+DLVH N+SRD SG DRHAN+ +G+I P+ + ++ AG P IC
Sbjct 183 LADAVEQVRGITGRVDLVHANNSRDAFDSGADRHANVVAGEIPPEAIAGVIRDAGTPAIC 242
Query 233 ETA-DQGRKDDIAFLRERTG 251
ET D G DI +LR + G
Sbjct 243 ETHRDMG--PDITYLRSQLG 260
>gi|296138173|ref|YP_003645416.1| xylose isomerase [Tsukamurella paurometabola DSM 20162]
gi|296026307|gb|ADG77077.1| Xylose isomerase domain protein TIM barrel [Tsukamurella paurometabola
DSM 20162]
Length=256
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/251 (56%), Positives = 177/251 (71%), Gaps = 5/251 (1%)
Query 3 IGSHV-SPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLI 61
IG+HV S T P+ AE+ G DV+Q+F+ +PQSWK P+P AL+ + L I VH+ Y+I
Sbjct 3 IGAHVRSDTHPVETAESLGVDVIQMFVADPQSWKKPEPHPQTQALRDSPLEIVVHSAYVI 62
Query 62 NLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLE 121
N+AS NNR+R+PSRK +++ AAAAD+GA ++VHGGH+ D D+ G WRK R E
Sbjct 63 NVASLNNRLRMPSRKAVEQQAAAAADLGAFGLVVHGGHLRDGEDLQGGIDNWRKLFTRQE 122
Query 122 TE----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAV 177
+ VP+ +ENTAGGD A+AR+ +TI RLWD +GD G GFCLDTCH WA GE L V
Sbjct 123 EKGGFGVPILIENTAGGDGAIARQLETIDRLWDAVGDQGAGFCLDTCHAWAGGEELLGIV 182
Query 178 DRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETADQ 237
+R+ AITGRIDLVH N+SRDE S RDRHANL G IDPDLL +AA APVI ET
Sbjct 183 ERVLAITGRIDLVHLNNSRDEFDSARDRHANLQDGTIDPDLLADVARAADAPVILETPAD 242
Query 238 GRKDDIAFLRE 248
G DD+A+L+E
Sbjct 243 GLADDVAYLKE 253
>gi|257057873|ref|YP_003135705.1| Endonuclease IV [Saccharomonospora viridis DSM 43017]
gi|256587745|gb|ACU98878.1| Endonuclease IV [Saccharomonospora viridis DSM 43017]
Length=256
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 139/253 (55%), Positives = 173/253 (69%), Gaps = 6/253 (2%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV DPL+AA AD VQ FL +PQ WK P+P A L A + +Y+HAPY++N
Sbjct 3 IGAHVHADDPLSAARERAADSVQFFLSDPQGWKKPQPHPQATELADAGIDVYIHAPYVLN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRL-- 120
+AS NNR+RIPSRK+L + AAAA+ GA ++VHGGHV D +G WRK +R
Sbjct 63 VASLNNRIRIPSRKVLGQHTAAAAETGARGLVVHGGHVRQGEDPAEGLANWRKLFERRGE 122
Query 121 --ETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
+ EVP+ +ENTAGG AMAR D IARLWD + D G+GFCLDTCH +AAG L + V+
Sbjct 123 QGDFEVPLLIENTAGGASAMARDLDMIARLWDEVADFGVGFCLDTCHAYAAGWDLAETVE 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANL--GSGQIDPDLLVAAVKAAGAPVICETAD 236
R++AITGRIDLVH N+SRD GS RDRHAN+ +G ID +LLVA + A APVI ET
Sbjct 183 RVRAITGRIDLVHLNNSRDPHGSQRDRHANVVGEAGTIDTELLVAVAREAAAPVIVETPP 242
Query 237 QGRKDDIAFLRER 249
G+ DI FLR R
Sbjct 243 DGQATDIEFLRAR 255
>gi|291303844|ref|YP_003515122.1| apurinic endonuclease Apn1 [Stackebrandtia nassauensis DSM 44728]
gi|290573064|gb|ADD46029.1| apurinic endonuclease Apn1 [Stackebrandtia nassauensis DSM 44728]
Length=258
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/252 (56%), Positives = 172/252 (69%), Gaps = 6/252 (2%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IGSHV + PL A GA+VVQ F+G+PQ WK P+ R DA AL+A+ + I+VHAPY+IN
Sbjct 3 IGSHVDASSPLDEAAKRGAEVVQFFIGDPQGWKKPESRPDAEALRASDVDIFVHAPYVIN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKAL----D 118
+AS NNR+RIPSRK+L + AA+IGA +IVHGGHV D D+ GF WRKA D
Sbjct 63 VASPNNRIRIPSRKLLLQQARVAAEIGAKGLIVHGGHVTKDEDMAVGFANWRKAFEFGAD 122
Query 119 RLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
+ +P+ +ENTAGGD A ARR + I RLW+ +GD GFCLDTCH A G L+D VD
Sbjct 123 QGGFGLPILIENTAGGDKACARRLENIERLWEAVGDFDPGFCLDTCHAHAGGLDLSDVVD 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICETAD-- 236
R KAITG IDL+H NDSRD SGRDRHANLG+G IDP +V + AA P + ET
Sbjct 183 RAKAITGHIDLIHANDSRDTFDSGRDRHANLGAGHIDPQRIVDIISAARCPAVVETPGDA 242
Query 237 QGRKDDIAFLRE 248
+ + DIA +RE
Sbjct 243 EAQSADIALIRE 254
>gi|317126547|ref|YP_004100659.1| endonuclease IV [Intrasporangium calvum DSM 43043]
gi|315590635|gb|ADU49932.1| Endonuclease IV [Intrasporangium calvum DSM 43043]
Length=265
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/259 (57%), Positives = 172/259 (67%), Gaps = 12/259 (4%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAAL------KAATLPIYVH 56
IG+HV DP+A A A A + Q FLG+PQS+K P R A + A + +YVH
Sbjct 5 IGAHVDQEDPVAEARARHATLSQFFLGDPQSYKGPVVRHAGGAAGLRAAAETAGVDLYVH 64
Query 57 APYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKA 116
APY IN+AS NNR+RIP RK+LQ+ AAA+IGA VIVHGGH+ D D +GF WRK
Sbjct 65 APYPINVASLNNRIRIPGRKLLQQHLLAAAEIGAKGVIVHGGHLGVDEDSARGFDNWRKC 124
Query 117 LDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG----IGFCLDTCHTWAAGEA 172
+D LE VP+ +ENTAGGDHAMARR + IARLWD IG +GFCLDTCH A G
Sbjct 125 IDGLEMPVPLLIENTAGGDHAMARRLEAIARLWDAIGTASGGDTVGFCLDTCHAHAGGND 184
Query 173 LTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVIC 232
L VDR+KAITGRIDLVH NDSRD SG DRH NLGSG ID L V+AA APV+C
Sbjct 185 LGTIVDRVKAITGRIDLVHANDSRDAFDSGADRHTNLGSGHIDAAALADVVRAASAPVVC 244
Query 233 ET--ADQGRKDDIAFLRER 249
ET +G+ DI +LR R
Sbjct 245 ETPGGREGQSADIEWLRTR 263
>gi|145597066|ref|YP_001161363.1| endonuclease IV [Salinispora tropica CNB-440]
gi|145306403|gb|ABP56985.1| Endonuclease IV [Salinispora tropica CNB-440]
Length=263
Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/255 (58%), Positives = 177/255 (70%), Gaps = 6/255 (2%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV +DPLA A A AD VQ FL +PQ WKAPKPR DA L+ A + +YVHAPY+IN
Sbjct 3 IGAHVDSSDPLAEATARTADTVQFFLSDPQGWKAPKPRTDADRLRDAEVDLYVHAPYVIN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET 122
LA+ NNR+RIPSRK+L AAA +GA +IVHGGHV +D+ GF WRKA
Sbjct 63 LATLNNRIRIPSRKLLLAHAQAAAAVGARGLIVHGGHVNAGDDLATGFDNWRKAFAYAAE 122
Query 123 E----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
VPV +ENTAGG +A ARR D +ARLWD IGD +GFCLDTCH +A GE L VD
Sbjct 123 SGGFGVPVLIENTAGGANACARRLDALARLWDAIGDHEVGFCLDTCHAYAGGEELLGLVD 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICET--AD 236
RIKAITGRIDL+H N+S+ SG+DRH NL G IDP+ +VA ++AAGAPV+ ET
Sbjct 183 RIKAITGRIDLIHANNSKGTFNSGQDRHDNLTGGTIDPEQVVAVIRAAGAPVVVETPGGA 242
Query 237 QGRKDDIAFLRERTG 251
G+ DI FLRE+ G
Sbjct 243 GGQAADITFLREQLG 257
>gi|330470803|ref|YP_004408546.1| endonuclease IV [Verrucosispora maris AB-18-032]
gi|328813774|gb|AEB47946.1| endonuclease IV [Verrucosispora maris AB-18-032]
Length=263
Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/251 (61%), Positives = 179/251 (72%), Gaps = 6/251 (2%)
Query 3 IGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAATLPIYVHAPYLIN 62
IG+HV PTDPLA A A AD VQ FL +PQ WKAP+PR DA L+ A + IYVHAPY++N
Sbjct 3 IGAHVDPTDPLAEAAAREADAVQFFLADPQGWKAPQPRADAEQLRTADVDIYVHAPYVVN 62
Query 63 LASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWRKALDRLET 122
+A+ NNR+RIPSRK+L AAA IGA +IVHGGHV +D GF WRKAL +
Sbjct 63 VATGNNRIRIPSRKLLLAHAKAAAAIGAKGLIVHGGHVNAGDDPQTGFDNWRKALTYAQE 122
Query 123 E----VPVYLENTAGGDHAMARRFDTIARLWDVIGDTGIGFCLDTCHTWAAGEALTDAVD 178
+PV +ENTAGG++A ARR D +ARLWD +GD +GFCLDTCH A GE L VD
Sbjct 123 AGGFGLPVLIENTAGGENACARRLDALARLWDAVGDHEVGFCLDTCHAHAGGEELLGLVD 182
Query 179 RIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPVICET--AD 236
R+KAITGRIDLVH N+S+D GSGRDRH NL G IDP+LLV ++AAGAP I ET
Sbjct 183 RVKAITGRIDLVHANNSKDAFGSGRDRHDNLRGGTIDPELLVTVIRAAGAPAIVETPGGT 242
Query 237 QGRKDDIAFLR 247
G+ DDIAFLR
Sbjct 243 TGQGDDIAFLR 253
>gi|269958062|ref|YP_003327851.1| xylose isomerase domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269306743|gb|ACZ32293.1| Xylose isomerase domain protein TIM barrel [Xylanimonas cellulosilytica
DSM 15894]
Length=262
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/262 (56%), Positives = 178/262 (68%), Gaps = 17/262 (6%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKP---------RDDAAALKAATL 51
+ IG+HV D +A A+A GA+V Q+FLG+PQSWK R+DAAA A +
Sbjct 3 IRIGAHVDGADAVAQAQAIGAEVAQVFLGDPQSWKVTGSGYPGGEEALREDAAA---AGI 59
Query 52 PIYVHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQ 111
+YVHAPY IN+AS NNR+RIPSRK+LQ T AA IGA V+VHGGHV + + GF
Sbjct 60 DLYVHAPYGINVASTNNRIRIPSRKLLQATLEGAAAIGARGVVVHGGHVTGKDAPEVGFD 119
Query 112 RWRKALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVIGDTG----IGFCLDTCHTW 167
WRKA+D L+T+VPV +ENTAGGD AMAR + I +LW + + +GF LDTCH W
Sbjct 120 NWRKAIDSLDTDVPVLIENTAGGDFAMARHLERIEQLWAAVQSSTNASVVGFTLDTCHAW 179
Query 168 AAGEALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAG 227
A G L AV I+AITGRIDLVH NDSRD AGSG DRHA+ G+GQI PDLL + AAG
Sbjct 180 AGGIDLATAVADIRAITGRIDLVHANDSRDTAGSGADRHAHFGAGQIPPDLLTGVIAAAG 239
Query 228 APVICETADQGRKDDIAFLRER 249
APV+CET DIA+L++R
Sbjct 240 APVVCETHGD-MTPDIAWLQDR 260
>gi|334338341|ref|YP_004543493.1| Deoxyribonuclease IV (phage-T(4)-induced) [Isoptericola variabilis
225]
gi|334108709|gb|AEG45599.1| Deoxyribonuclease IV (phage-T(4)-induced) [Isoptericola variabilis
225]
Length=262
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/260 (55%), Positives = 172/260 (67%), Gaps = 13/260 (5%)
Query 1 VLIGSHVSPTDPLAAAEAEGADVVQIFLGNPQSWKAPKPRDDAAALKAAT------LPIY 54
V IG+HV +D +A A+ GADVVQ+F+ +PQ+WK P L +Y
Sbjct 3 VKIGAHVDLSDAVAQAKEIGADVVQVFVSDPQAWKVPPIEHPGGTEAFREEAAAAGLDVY 62
Query 55 VHAPYLINLASANNRVRIPSRKILQETCAAAADIGAAAVIVHGGHVADDNDIDKGFQRWR 114
VHAPY+IN+AS NNR+RIPSRK+LQ+ A +IGA VIVHGGHV +D GF WR
Sbjct 63 VHAPYVINVASTNNRIRIPSRKLLQQVMVRAEEIGAKGVIVHGGHVTAKDDPAAGFDNWR 122
Query 115 KALDRLETEVPVYLENTAGGDHAMARRFDTIARLWDVI----GDTGIGFCLDTCHTWAAG 170
KA+D LE++VPV +ENTAGGD +MARR + I +LW + G +GF LDTCH WA G
Sbjct 123 KAIDALESDVPVLIENTAGGDFSMARRLERIEQLWAAVMQANGAENVGFTLDTCHAWAGG 182
Query 171 EALTDAVDRIKAITGRIDLVHCNDSRDEAGSGRDRHANLGSGQIDPDLLVAAVKAAGAPV 230
L AVD I+ ITGRIDLVH NDSRD AGSG DRH + G G I +LLV + AGAPV
Sbjct 183 IDLATAVDEIRGITGRIDLVHANDSRDAAGSGADRHTHFGLGMIPEELLVGVIATAGAPV 242
Query 231 ICET-ADQGRKDDIAFLRER 249
ICET D G DIA+LRER
Sbjct 243 ICETHGDMG--PDIAWLRER 260
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 365242488240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40