BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0674
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607814|ref|NP_215188.1| hypothetical protein Rv0674 [Mycoba... 473 8e-132
gi|340625693|ref|YP_004744145.1| hypothetical protein MCAN_06741... 472 3e-131
gi|289749180|ref|ZP_06508558.1| conserved hypothetical protein [... 468 4e-130
gi|270047793|pdb|3KFW|X Chain X, Uncharacterized Protein Rv0674 ... 441 6e-122
gi|289442073|ref|ZP_06431817.1| conserved hypothetical protein [... 438 4e-121
gi|118616539|ref|YP_904871.1| putative regulatory protein [Mycob... 379 3e-103
gi|183981024|ref|YP_001849315.1| putative regulatory protein [My... 379 3e-103
gi|240167674|ref|ZP_04746333.1| putative regulatory protein [Myc... 365 3e-99
gi|118463619|ref|YP_883632.1| hypothetical protein MAV_4498 [Myc... 352 3e-95
gi|254822767|ref|ZP_05227768.1| hypothetical protein MintA_22749... 351 5e-95
gi|296165776|ref|ZP_06848287.1| PaaX domain protein, C- domain p... 348 6e-94
gi|41410233|ref|NP_963069.1| hypothetical protein MAP4135 [Mycob... 347 7e-94
gi|342858838|ref|ZP_08715492.1| hypothetical protein MCOL_08178 ... 338 5e-91
gi|120402282|ref|YP_952111.1| PaaX domain-containing protein, C-... 336 1e-90
gi|108797950|ref|YP_638147.1| PaaX-like protein [Mycobacterium s... 334 8e-90
gi|118468768|ref|YP_885775.1| hypothetical protein MSMEG_1389 [M... 315 3e-84
gi|145225661|ref|YP_001136339.1| PaaX domain-containing protein,... 312 2e-83
gi|315446014|ref|YP_004078893.1| phenylacetic acid-responsive tr... 311 5e-83
gi|333989329|ref|YP_004521943.1| regulatory protein [Mycobacteri... 306 2e-81
gi|169630937|ref|YP_001704586.1| hypothetical protein MAB_3858c ... 249 2e-64
gi|297197846|ref|ZP_06915243.1| conserved hypothetical protein [... 198 5e-49
gi|126348364|emb|CAJ90086.1| conserved hypothetical protein [Str... 196 3e-48
gi|345011414|ref|YP_004813768.1| PaaX family transcriptional reg... 187 1e-45
gi|311742201|ref|ZP_07716011.1| conserved hypothetical protein [... 186 3e-45
gi|262204115|ref|YP_003275323.1| PaaX domain-containing protein ... 185 5e-45
gi|271967417|ref|YP_003341613.1| PaaX family transcriptional reg... 177 9e-43
gi|297155150|gb|ADI04862.1| putative transcriptional regulator, ... 175 4e-42
gi|289773188|ref|ZP_06532566.1| conserved hypothetical protein [... 175 5e-42
gi|21219625|ref|NP_625404.1| hypothetical protein SCO1111 [Strep... 175 5e-42
gi|326328697|ref|ZP_08195036.1| hypothetical protein NBCG_00136 ... 168 7e-40
gi|291441088|ref|ZP_06580478.1| PaaX domain-containing protein [... 145 5e-33
gi|118619919|ref|YP_908251.1| hypothetical protein MUL_4885 [Myc... 127 2e-27
gi|183980262|ref|YP_001848553.1| hypothetical protein MMAR_0229 ... 125 7e-27
gi|149182069|ref|ZP_01860554.1| repressor in the phenylacetic ac... 81.6 8e-14
gi|261420235|ref|YP_003253917.1| PaaX family transcriptional reg... 76.3 4e-12
gi|56420569|ref|YP_147887.1| repressor in the phenylacetic acid ... 73.2 3e-11
gi|345011972|ref|YP_004814326.1| PaaX family transcriptional reg... 73.2 3e-11
gi|345022586|ref|ZP_08786199.1| repressor [Ornithinibacillus sp.... 72.8 4e-11
gi|46201959|ref|ZP_00208324.1| COG3327: Phenylacetic acid-respon... 72.4 6e-11
gi|312110581|ref|YP_003988897.1| PaaX family transcriptional reg... 72.0 7e-11
gi|319653220|ref|ZP_08007322.1| repressor in the phenylacetic ac... 70.5 2e-10
gi|138895566|ref|YP_001126019.1| putative regulator [Geobacillus... 70.1 3e-10
gi|83311113|ref|YP_421377.1| phenylacetic acid-responsive transc... 70.1 3e-10
gi|144898613|emb|CAM75477.1| Phenylacetic acid-responsive transc... 68.9 6e-10
gi|297529806|ref|YP_003671081.1| PaaX family transcriptional reg... 68.9 7e-10
gi|332284718|ref|YP_004416629.1| phenylacetic acid degradation o... 67.4 2e-09
gi|229543879|ref|ZP_04432938.1| transcriptional regulator, PaaX ... 66.2 3e-09
gi|288959303|ref|YP_003449644.1| phenylacetic acid degradation o... 65.5 7e-09
gi|293604210|ref|ZP_06686618.1| phenylacetic acid degradation op... 64.7 1e-08
gi|290959802|ref|YP_003490984.1| PaaX family transcriptional reg... 64.7 1e-08
>gi|15607814|ref|NP_215188.1| hypothetical protein Rv0674 [Mycobacterium tuberculosis H37Rv]
gi|15840077|ref|NP_335114.1| hypothetical protein MT0703 [Mycobacterium tuberculosis CDC1551]
gi|31791858|ref|NP_854351.1| hypothetical protein Mb0693 [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=240
Score = 473 bits (1218), Expect = 8e-132, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG
Sbjct 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR
Sbjct 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT
Sbjct 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
Query 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT
Sbjct 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
>gi|340625693|ref|YP_004744145.1| hypothetical protein MCAN_06741 [Mycobacterium canettii CIPT
140010059]
gi|340003883|emb|CCC43014.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=240
Score = 472 bits (1214), Expect = 3e-131, Method: Compositional matrix adjust.
Identities = 239/240 (99%), Positives = 239/240 (99%), Gaps = 0/240 (0%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
MPAMTARSVVLSVLLGAHPAWA ASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG
Sbjct 1 MPAMTARSVVLSVLLGAHPAWAAASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR
Sbjct 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT
Sbjct 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
Query 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT
Sbjct 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
>gi|289749180|ref|ZP_06508558.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689767|gb|EFD57196.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=237
Score = 468 bits (1203), Expect = 4e-130, Method: Compositional matrix adjust.
Identities = 237/237 (100%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL
Sbjct 1 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 60
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV
Sbjct 61 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 120
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP
Sbjct 121 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 180
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT
Sbjct 181 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 237
>gi|270047793|pdb|3KFW|X Chain X, Uncharacterized Protein Rv0674 From Mycobacterium Tuberculosis
Length=247
Score = 441 bits (1133), Expect = 6e-122, Method: Compositional matrix adjust.
Identities = 225/238 (95%), Positives = 227/238 (96%), Gaps = 0/238 (0%)
Query 3 AMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYR 62
++TARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTR VGAGDLVRSADGYR
Sbjct 2 SLTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRXVGAGDLVRSADGYR 61
Query 63 LSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREG 122
LSDRLLARQRRQDEA RPRTRAWHGNWH LIVTSIGTDARTRAALRTC HHKRFGELREG
Sbjct 62 LSDRLLARQRRQDEAXRPRTRAWHGNWHXLIVTSIGTDARTRAALRTCXHHKRFGELREG 121
Query 123 VWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
VW RPDNLDLDLESDVAARVR LTARDEAPADLAGQLWDLSGWTEAGHRLLGD AAATD
Sbjct 122 VWXRPDNLDLDLESDVAARVRXLTARDEAPADLAGQLWDLSGWTEAGHRLLGDXAAATDX 181
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
PGRFVVAAA VRHLLTDP LPAELLPADWPGAGLRAAYHDFATA AKRRDATQLLEVT
Sbjct 182 PGRFVVAAAXVRHLLTDPXLPAELLPADWPGAGLRAAYHDFATAXAKRRDATQLLEVT 239
>gi|289442073|ref|ZP_06431817.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289414992|gb|EFD12232.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=240
Score = 438 bits (1126), Expect = 4e-121, Method: Compositional matrix adjust.
Identities = 228/243 (94%), Positives = 229/243 (95%), Gaps = 6/243 (2%)
Query 1 MPAMTARS---VVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRS 57
MPAMTARS SVL+ P SELIQLTADFGIKETTLRVALTRMVGAGDLVRS
Sbjct 1 MPAMTARSWYSACCSVLIPRGPP---QSELIQLTADFGIKETTLRVALTRMVGAGDLVRS 57
Query 58 ADGYRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFG 117
ADGYRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFG
Sbjct 58 ADGYRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFG 117
Query 118 ELREGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMA 177
ELREGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMA
Sbjct 118 ELREGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMA 177
Query 178 AATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLL 237
AATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLL
Sbjct 178 AATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLL 237
Query 238 EVT 240
EVT
Sbjct 238 EVT 240
>gi|118616539|ref|YP_904871.1| putative regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568649|gb|ABL03400.1| conserved hypothetical regulatory protein [Mycobacterium ulcerans
Agy99]
Length=243
Score = 379 bits (972), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 190/241 (79%), Positives = 210/241 (88%), Gaps = 3/241 (1%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
M AMTARSVVLSVLLGAHPAWA+ASELI+LTADFGIKET LRVALTRMV GDL+RSADG
Sbjct 1 MAAMTARSVVLSVLLGAHPAWASASELIRLTADFGIKETALRVALTRMVSGGDLIRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQ RQDEAMRPR R W GNWH++IVTS+GTDARTRAALRT MH KRF ELR
Sbjct 61 YRLSDRLLARQARQDEAMRPRVRPWQGNWHLVIVTSVGTDARTRAALRTTMHDKRFAELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLG---DMA 177
EGVW+RPDNLDL+L +DVA RVR+LTARD+APA+LAGQLWDL+GW G RLLG +MA
Sbjct 121 EGVWLRPDNLDLELAADVAERVRVLTARDDAPAELAGQLWDLTGWAGVGDRLLGEMAEMA 180
Query 178 AATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLL 237
A +PG+F +AAAMVRHLL+DPMLP ELLPA WPGA LR+AYHDFAT +AKRR QLL
Sbjct 181 EAAGIPGQFALAAAMVRHLLSDPMLPEELLPAKWPGAQLRSAYHDFATELAKRRGTNQLL 240
Query 238 E 238
E
Sbjct 241 E 241
>gi|183981024|ref|YP_001849315.1| putative regulatory protein [Mycobacterium marinum M]
gi|183174350|gb|ACC39460.1| conserved hypothetical regulatory protein [Mycobacterium marinum
M]
Length=243
Score = 379 bits (972), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 190/241 (79%), Positives = 210/241 (88%), Gaps = 3/241 (1%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
M AMTARSVVLSVLLGAHPAWA+ASELI+LTADFGIKET LRVALTRMV GDL+RSADG
Sbjct 1 MAAMTARSVVLSVLLGAHPAWASASELIRLTADFGIKETALRVALTRMVSGGDLIRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQ RQDEAMRPR R W GNWH++IVTS+GTDARTRAALRT MH KRF ELR
Sbjct 61 YRLSDRLLARQARQDEAMRPRVRPWQGNWHLVIVTSVGTDARTRAALRTTMHDKRFAELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLG---DMA 177
EGVW+RPDNLDL+L +DVA RVR+LTARD+APA+LAGQLWDL+ W G RLLG +MA
Sbjct 121 EGVWLRPDNLDLELAADVAERVRVLTARDDAPAELAGQLWDLTEWAGVGDRLLGEMAEMA 180
Query 178 AATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLL 237
A D+PG+F +AAAMVRHLL+DPMLP ELLPA WPGA LR+AYHDFAT +AKRR QLL
Sbjct 181 EAADIPGQFALAAAMVRHLLSDPMLPEELLPAKWPGAQLRSAYHDFATELAKRRGTNQLL 240
Query 238 E 238
E
Sbjct 241 E 241
>gi|240167674|ref|ZP_04746333.1| putative regulatory protein [Mycobacterium kansasii ATCC 12478]
Length=244
Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 179/237 (76%), Positives = 207/237 (88%), Gaps = 0/237 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSVVLSVLLGAHPAWA+ASEL++LTADFGIKET LRVALTRMV AGDLVRSADGYRL
Sbjct 8 MTARSVVLSVLLGAHPAWASASELVRLTADFGIKETALRVALTRMVSAGDLVRSADGYRL 67
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRLLARQRRQDEAMRPR R W+G+W ++++TS+G DARTRAALRT + KRFGELREGV
Sbjct 68 SDRLLARQRRQDEAMRPRVRDWNGSWRLVVITSVGNDARTRAALRTTLQDKRFGELREGV 127
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
W+RPDNLDL+L + +VR+L+A D+APA+LA +LWDL+ W +AG +LLG++A A D+P
Sbjct 128 WLRPDNLDLELPPGITTQVRVLSAHDDAPAELAARLWDLADWADAGEQLLGEIAQAADIP 187
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
GRFVVAAAMVRHLLTDPMLPAELLPA WPG LR AYHDFAT +AK D +QLLE T
Sbjct 188 GRFVVAAAMVRHLLTDPMLPAELLPAQWPGTRLREAYHDFATELAKHLDTSQLLEAT 244
>gi|118463619|ref|YP_883632.1| hypothetical protein MAV_4498 [Mycobacterium avium 104]
gi|254776933|ref|ZP_05218449.1| hypothetical protein MaviaA2_20011 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118164906|gb|ABK65803.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=239
Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 177/232 (77%), Positives = 196/232 (85%), Gaps = 0/232 (0%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
MP +TARSVVLSVLLGAHPA A ASEL++LT+DFGIKE+TLRVALTRMV AGDL+RSADG
Sbjct 1 MPDLTARSVVLSVLLGAHPAHARASELVRLTSDFGIKESTLRVALTRMVNAGDLIRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQRRQD+A+ P+ R W G W LIVTS+G DARTRAALR MH KRFGELR
Sbjct 61 YRLSDRLLARQRRQDDAIDPKVRPWRGQWVTLIVTSVGDDARTRAALRNAMHDKRFGELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
EGVWMRPDN+D L DV R R++TARD+ PADLAG+LWDL GW AGHRLL +MAAA
Sbjct 121 EGVWMRPDNIDTQLGPDVTDRARVITARDDDPADLAGRLWDLPGWARAGHRLLDEMAAAP 180
Query 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRD 232
D+PGRFVVAAAMVRHLLTDP+LP ELLP DWPG LRAAYHDFA + RRD
Sbjct 181 DVPGRFVVAAAMVRHLLTDPVLPDELLPPDWPGTRLRAAYHDFAAELMARRD 232
>gi|254822767|ref|ZP_05227768.1| hypothetical protein MintA_22749 [Mycobacterium intracellulare
ATCC 13950]
Length=236
Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 178/229 (78%), Positives = 198/229 (87%), Gaps = 0/229 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSVVLSVLLGAHPA A ASEL++LT+DFGIKE+TLRVALTRMVGAGDLVR+ADGY+L
Sbjct 1 MTARSVVLSVLLGAHPARARASELVRLTSDFGIKESTLRVALTRMVGAGDLVRNADGYQL 60
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRLLARQRRQD+A+ PR R W G W L+VTS+G DARTRAALRT MH KRFGELREGV
Sbjct 61 SDRLLARQRRQDDAIDPRVRPWRGEWVTLVVTSVGDDARTRAALRTAMHDKRFGELREGV 120
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
WMRPDN+D +L DV ARVR+L ARD PA+LA QLWDL W +AGHRLL DMAAA D+P
Sbjct 121 WMRPDNIDAELGPDVTARVRVLRARDGDPAELAAQLWDLPAWAQAGHRLLDDMAAAPDIP 180
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRD 232
GRFVVAAA VRHLLTDP+LP ELLPADWPGA LRAAYHDFA + +RR+
Sbjct 181 GRFVVAAATVRHLLTDPVLPDELLPADWPGARLRAAYHDFAAELLRRRE 229
>gi|296165776|ref|ZP_06848287.1| PaaX domain protein, C- domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898870|gb|EFG78365.1| PaaX domain protein, C- domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=239
Score = 348 bits (892), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 179/232 (78%), Positives = 196/232 (85%), Gaps = 0/232 (0%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
M MTARSVVLSVLLGAHPA A ASEL++LT+DFGIKETTLRVALTRMVGAGDL+RSADG
Sbjct 1 MATMTARSVVLSVLLGAHPAHARASELVRLTSDFGIKETTLRVALTRMVGAGDLIRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQRRQD+A+ PR R W G W LIVTS+G DARTRAALRT MH KRFGELR
Sbjct 61 YRLSDRLLARQRRQDDAIDPRLRLWRGEWVTLIVTSVGNDARTRAALRTAMHDKRFGELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
EGVWMRPDNL+L L+ + ARVR+L ARD+ PA LA QLWDL W GHRLL +MAAA
Sbjct 121 EGVWMRPDNLELGLDPEFDARVRVLRARDDDPAGLAAQLWDLPAWARTGHRLLDEMAAAR 180
Query 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRD 232
D+PGRFVVAAA VRHLLTDP+LP ELLPADWPGA LRAAYHDFA + RR+
Sbjct 181 DIPGRFVVAAATVRHLLTDPVLPDELLPADWPGARLRAAYHDFAAELLGRRE 232
>gi|41410233|ref|NP_963069.1| hypothetical protein MAP4135 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399067|gb|AAS06685.1| hypothetical protein MAP_4135 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460545|gb|EGO39438.1| phenylacetic acid-responsive transcriptional repressor [Mycobacterium
avium subsp. paratuberculosis S397]
Length=239
Score = 347 bits (891), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 175/232 (76%), Positives = 194/232 (84%), Gaps = 0/232 (0%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
MP +TARSVVLSVLLGAHPA A ASEL++LT+DFGIKE+TLRVALTRMV AGDL+RSADG
Sbjct 1 MPDLTARSVVLSVLLGAHPAHARASELVRLTSDFGIKESTLRVALTRMVNAGDLIRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQRRQD+A+ P+ R W G W LIVTS+G DARTRAALR MH KRF ELR
Sbjct 61 YRLSDRLLARQRRQDDAIDPKVRPWRGQWVTLIVTSVGDDARTRAALRNAMHDKRFSELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
EGVWMRPDN+D L DV R R++TARD+ PADLAG+LWDL GW AGHRLL +MAAA
Sbjct 121 EGVWMRPDNIDTQLGPDVTDRARVITARDDDPADLAGRLWDLLGWARAGHRLLDEMAAAP 180
Query 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRD 232
D+PGRFV AAAMVRHLLTDP+LP ELLP DWPG LRAAYHDFA + RRD
Sbjct 181 DVPGRFVAAAAMVRHLLTDPVLPDELLPPDWPGTRLRAAYHDFAAELMARRD 232
>gi|342858838|ref|ZP_08715492.1| hypothetical protein MCOL_08178 [Mycobacterium colombiense CECT
3035]
gi|342133079|gb|EGT86282.1| hypothetical protein MCOL_08178 [Mycobacterium colombiense CECT
3035]
Length=239
Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/232 (73%), Positives = 195/232 (85%), Gaps = 0/232 (0%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
MP MTARSVVLSVLLGAHPA A ASEL++LT+DFGIKE+TLRVALTRMVGAGDL+RSADG
Sbjct 1 MPDMTARSVVLSVLLGAHPAHARASELVRLTSDFGIKESTLRVALTRMVGAGDLIRSADG 60
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
YRLSDRLLARQ RQD A+ PR W+G W LIVTS+G DARTRAALRT +H KRFGELR
Sbjct 61 YRLSDRLLARQERQDAAIDPRVHPWNGEWVTLIVTSVGNDARTRAALRTTLHDKRFGELR 120
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAAT 180
EGVWMRPDN++ + ++AA+ R+L ARD+ PA LA QLWDL W + GHRLL +MA+A
Sbjct 121 EGVWMRPDNIEAEPGPEIAAQARVLRARDDDPAGLAAQLWDLPAWAQNGHRLLDEMASAP 180
Query 181 DMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRD 232
D+P RF+VAAA VRHLLTDP+LP ELLPADWPGA LRAAYHDFA + +RR+
Sbjct 181 DIPARFLVAAATVRHLLTDPVLPDELLPADWPGARLRAAYHDFAAELLRRRE 232
>gi|120402282|ref|YP_952111.1| PaaX domain-containing protein, C- domain [Mycobacterium vanbaalenii
PYR-1]
gi|119955100|gb|ABM12105.1| PaaX domain protein, C-terminal domain [Mycobacterium vanbaalenii
PYR-1]
Length=237
Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/235 (71%), Positives = 194/235 (83%), Gaps = 0/235 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSVVLSVLLGAHPAWATA+ELI+LT+DFGI+E+T+RVALTRMVGAGDLVRS DGYRL
Sbjct 1 MTARSVVLSVLLGAHPAWATAAELIRLTSDFGIRESTVRVALTRMVGAGDLVRSEDGYRL 60
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRLLARQRRQD+A+ PR AW G+W ML++TS+GTDARTRA LR + RF ELREGV
Sbjct 61 SDRLLARQRRQDDAITPRRHAWDGSWTMLVITSVGTDARTRAQLRNTLQDNRFAELREGV 120
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
WMRP N+DL+L D+ +VR+L ARD+ PA+LA +LWDL GW G LL +A A D+P
Sbjct 121 WMRPANVDLELGPDITEKVRILAARDDEPAELAARLWDLPGWAATGRELLTRIADADDVP 180
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLE 238
GRFVVAAAMVRHLLTDP+LP ELL DWPGA LR+AY+DFA M RRD +L+E
Sbjct 181 GRFVVAAAMVRHLLTDPVLPDELLATDWPGAALRSAYNDFAAEMVARRDGVELME 235
>gi|108797950|ref|YP_638147.1| PaaX-like protein [Mycobacterium sp. MCS]
gi|119867047|ref|YP_936999.1| PaaX domain-containing protein, C- domain [Mycobacterium sp.
KMS]
gi|126433613|ref|YP_001069304.1| PaaX domain-containing protein, C- domain [Mycobacterium sp.
JLS]
gi|108768369|gb|ABG07091.1| PaaX-like protein [Mycobacterium sp. MCS]
gi|119693136|gb|ABL90209.1| PaaX domain protein, C-terminal domain [Mycobacterium sp. KMS]
gi|126233413|gb|ABN96813.1| PaaX domain protein, C-terminal domain [Mycobacterium sp. JLS]
Length=243
Score = 334 bits (856), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 172/241 (72%), Positives = 193/241 (81%), Gaps = 4/241 (1%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
+TARSVVLSVLLGAHPAWATASELI+LTADF I+E T+RVALTRMVGAGDLVRSADGYRL
Sbjct 3 LTARSVVLSVLLGAHPAWATASELIRLTADFDIREPTVRVALTRMVGAGDLVRSADGYRL 62
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRLLARQRRQD+A+ PR R W G W L++TS+GTDARTRAALR + RFGELREGV
Sbjct 63 SDRLLARQRRQDDAINPRPRRWDGTWTTLVITSVGTDARTRAALRNTLQDNRFGELREGV 122
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
W+RPDNLD L DVA RVR+L ARD+ PADLA +LWDL W G RLL DM A D+P
Sbjct 123 WLRPDNLDTALPEDVADRVRVLHARDDEPADLAARLWDLPAWAAQGRRLLDDMDTARDIP 182
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDAT----QLLEV 239
RFV AAA+VRHLLTDP+LPA+LLPADWPG LR AY FA + +RRDA QL+E
Sbjct 183 ARFVTAAAIVRHLLTDPVLPADLLPADWPGDELRTAYTAFAAELVERRDAQLRDAQLMEA 242
Query 240 T 240
T
Sbjct 243 T 243
>gi|118468768|ref|YP_885775.1| hypothetical protein MSMEG_1389 [Mycobacterium smegmatis str.
MC2 155]
gi|118170055|gb|ABK70951.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=245
Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/237 (67%), Positives = 187/237 (79%), Gaps = 0/237 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSVVLSV+LGAHPAWA+++ELI+LT+DFGI+E TLRVALTRMV AGDLVRSADGYRL
Sbjct 9 MTARSVVLSVMLGAHPAWASSAELIRLTSDFGIREQTLRVALTRMVSAGDLVRSADGYRL 68
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRL+ RQRRQD+A+ P+ G W ++VTS+GTDARTRA +R + RFGELREGV
Sbjct 69 SDRLMVRQRRQDDAIDPKVHDHDGEWLTVVVTSVGTDARTRAWMRNTLQQYRFGELREGV 128
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
W+RPDNLD L ++ RVR+L RD+ P DLA +LWDL GW G LL MA ATD+P
Sbjct 129 WLRPDNLDQALPGEITDRVRVLRTRDDNPRDLAARLWDLPGWARTGELLLEAMADATDVP 188
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
RFVVAA +VRHLL DP+LP +LLPA WPGA LRAAY+DFA + RRD T+L+E T
Sbjct 189 ARFVVAAGIVRHLLVDPVLPDDLLPASWPGAALRAAYNDFAAELVARRDRTELMEAT 245
>gi|145225661|ref|YP_001136339.1| PaaX domain-containing protein, C- domain [Mycobacterium gilvum
PYR-GCK]
gi|145218147|gb|ABP47551.1| PaaX domain protein, C-terminal domain [Mycobacterium gilvum
PYR-GCK]
Length=244
Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 156/235 (67%), Positives = 186/235 (80%), Gaps = 0/235 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSVVLSVLLGAHPAWATA+ELI+LT+DFGI+E+T+RVALTRMV AGDLVRS DGYRL
Sbjct 8 MTARSVVLSVLLGAHPAWATAAELIRLTSDFGIRESTVRVALTRMVSAGDLVRSEDGYRL 67
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
S RLLARQRRQD+ + PR W G W L++TS+G DARTRA LR + + RF ELR+GV
Sbjct 68 SGRLLARQRRQDDVLEPRRGEWDGLWTTLVITSVGADARTRAHLRNTLQNHRFAELRDGV 127
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
WMRP N+++ L +++ + R+L ARDE PA+LA LWDL+GW G RLL +M A D+P
Sbjct 128 WMRPANVEVQLGANITEKARILQARDERPAELATHLWDLTGWAVDGRRLLKEMDDAHDVP 187
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLE 238
RFV AA +VRHLLTDP+LP ELLPADWPGA LRAAY+DFA M RRD +L E
Sbjct 188 TRFVAAATIVRHLLTDPVLPDELLPADWPGADLRAAYNDFAAEMVARRDDVKLTE 242
>gi|315446014|ref|YP_004078893.1| phenylacetic acid-responsive transcriptional repressor [Mycobacterium
sp. Spyr1]
gi|315264317|gb|ADU01059.1| phenylacetic acid-responsive transcriptional repressor [Mycobacterium
sp. Spyr1]
Length=242
Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/235 (65%), Positives = 185/235 (79%), Gaps = 0/235 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
+TARSVVLSVLLGAHPA A+A+EL++L DF I+E+T+RVALTRMV AGDLVRS DGYRL
Sbjct 6 LTARSVVLSVLLGAHPASASAAELVRLAGDFDIRESTVRVALTRMVTAGDLVRSKDGYRL 65
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRLLARQRRQD+A+ PR W G W +++TS+G DAR R+ALR + KRF ELREGV
Sbjct 66 SDRLLARQRRQDDALSPRRTDWDGMWRTVVITSVGNDARARSALRNSLQEKRFAELREGV 125
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
WMRPDN+++ L+++V +RVR+L A DE P +LA +LWDL W GH LLG+MA A D P
Sbjct 126 WMRPDNIEIALDAEVMSRVRILRACDEDPEELAQKLWDLPKWGAIGHDLLGEMADAADFP 185
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLE 238
GRFVVAAAM+RHLLTDP+LP LLP WPGA LR+AY +FA + RRD L+E
Sbjct 186 GRFVVAAAMIRHLLTDPVLPDALLPPHWPGAALRSAYENFAAELVSRRDGIDLME 240
>gi|333989329|ref|YP_004521943.1| regulatory protein [Mycobacterium sp. JDM601]
gi|333485297|gb|AEF34689.1| putative regulatory protein [Mycobacterium sp. JDM601]
Length=237
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/236 (65%), Positives = 189/236 (81%), Gaps = 0/236 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSVVLSVLLGAHPA AT++EL+ LTA FGIKET +RVALTR+V AGDLVRSA GY L
Sbjct 1 MTARSVVLSVLLGAHPASATSAELLNLTAGFGIKETAMRVALTRLVAAGDLVRSAGGYGL 60
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
S+RLL RQRRQDEA+ P+TR W G+W +++TSIG DARTRAALR+ + +RF ELREG+
Sbjct 61 SERLLERQRRQDEALNPQTRRWGGDWLAVVITSIGCDARTRAALRSRLTERRFAELREGI 120
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
WMRPDN+ +DL +++ R+L ARD+ PA+LAG+LWDL+GW G+ LL +AAA D+P
Sbjct 121 WMRPDNIAVDLGAELTPHTRLLIARDDQPAELAGRLWDLTGWAATGNELLAGIAAAPDVP 180
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEV 239
GRFVVAAAMVRHL DP+LP ELLP DWPG +R+ Y +F +A +RDA + +EV
Sbjct 181 GRFVVAAAMVRHLRRDPVLPTELLPPDWPGDRIRSRYAEFVDEVAAQRDAGRTVEV 236
>gi|169630937|ref|YP_001704586.1| hypothetical protein MAB_3858c [Mycobacterium abscessus ATCC
19977]
gi|169242904|emb|CAM63932.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=247
Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/237 (55%), Positives = 161/237 (68%), Gaps = 0/237 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
MTARSV+LS+LLGAHPA + E+ LT FGI +TT+RVALTRMV AGDLVR+ GYRL
Sbjct 10 MTARSVILSLLLGAHPAELSVREIRALTTLFGISDTTVRVALTRMVAAGDLVRTEAGYRL 69
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
++RL ARQ RQDEA P +W G W L++TS+G DAR R LRT + RFGE REGV
Sbjct 70 AERLQARQLRQDEACDPHRGSWDGTWKQLVITSVGRDARDRNDLRTTLRQSRFGEFREGV 129
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP 183
W+RP+NL++DL V V +L R + P LA QLWDL+GW+ LL A +P
Sbjct 130 WLRPENLEVDLPPSVTDHVWILHTRTDRPEVLAAQLWDLTGWSTYATALLRWWDQAEAIP 189
Query 184 GRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDATQLLEVT 240
RFV+AAAMVRHLL DP+LP ELLPADWP +RA Y +F + RD ++ E +
Sbjct 190 ARFVLAAAMVRHLLADPVLPDELLPADWPADEMRARYREFKDELVTLRDTAEMEEAS 246
>gi|297197846|ref|ZP_06915243.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|297146888|gb|EFH28385.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=252
Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/226 (50%), Positives = 141/226 (63%), Gaps = 1/226 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARSVVLS+LLGAHP +L++ FG+ +TLR AL+RMV AGDL R+ Y L
Sbjct 17 LSARSVVLSLLLGAHPPQLPVKDLVRAVEPFGVGGSTLRAALSRMVSAGDLRRAEGVYGL 76
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRLLARQRRQD+++ PRTRAW G+W M+++T+ G RA LR + R ELREGV
Sbjct 77 SDRLLARQRRQDDSVHPRTRAWSGDWEMVVITATGRGPAERAELRARLTALRLAELREGV 136
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPA-DLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
W+RP NL L D+ + TAR +LA LW L W LL +A A
Sbjct 137 WLRPANLLRPLPEDLDGIAQRCTARPAGSGPELAAGLWPLDRWAADSRALLAHVARADRP 196
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMA 228
R AA+VRHLLTDP+LP ELLP DWPGA LR+AY + +A
Sbjct 197 ADRLTGFAAVVRHLLTDPVLPPELLPHDWPGAALRSAYAAYQGELA 242
>gi|126348364|emb|CAJ90086.1| conserved hypothetical protein [Streptomyces ambofaciens ATCC
23877]
Length=250
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/226 (50%), Positives = 138/226 (62%), Gaps = 1/226 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARSVVLS+LLG HP EL++L FGI T+R AL+RM AGDL R+ GYRL
Sbjct 15 LSARSVVLSLLLGTHPPELPVRELVRLVDGFGIGGPTVRAALSRMAAAGDLRRTDTGYRL 74
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
S+RLL RQRRQDEA+ PRTRAW G+W ++VT+ G + RA LR + R ELREGV
Sbjct 75 SERLLERQRRQDEAVHPRTRAWKGDWETVVVTATGREPAERADLRARLTALRLAELREGV 134
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPA-DLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
W+RP NL L + + L +R P +LA +LW L W+ LL + A
Sbjct 135 WLRPANLCRPLPAGLDRVAERLDSRPGRPGRELASRLWPLDDWSATAWALLARVDRAGRP 194
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMA 228
R AA+VRHLL DP+LP ELLPA WPG LR AY D+ A
Sbjct 195 ADRLAAFAAVVRHLLADPVLPPELLPARWPGGALRDAYTDYQREQA 240
>gi|345011414|ref|YP_004813768.1| PaaX family transcriptional regulator [Streptomyces violaceusniger
Tu 4113]
gi|344037763|gb|AEM83488.1| transcriptional regulator, PaaX family [Streptomyces violaceusniger
Tu 4113]
Length=251
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/223 (56%), Positives = 142/223 (64%), Gaps = 5/223 (2%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
+TARS+VLS LLG HP A L+++ A FG E T+RVALTRMV AGDL +S YRL
Sbjct 16 LTARSIVLSTLLGHHPPQLPARALVRVGALFGTAEGTIRVALTRMVAAGDLEQSEGTYRL 75
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
+DRLLARQ RQD++ PRTR W G W + IVTS DA RAALR M R ELREG
Sbjct 76 TDRLLARQARQDDSRAPRTRRWDGGWEIAIVTSDRRDAAERAALRQAMAALRLAELREGT 135
Query 124 WMRPDNLDLDLESDVAA-RVRMLTARDEA-PADLAGQLWDLSGWTEAGHRLLGDMAAATD 181
WMRP NL + DVAA + T E PA+LA +LWDL GW RLLG +
Sbjct 136 WMRPANL-VHPRPDVAAEQCGWFTGAPEGDPAELAARLWDLDGWARQA-RLLGAALDDAE 193
Query 182 MPG-RFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDF 223
P RF VAAA +RHLL DP+LPA LLP DWPGA LR Y F
Sbjct 194 KPAERFTVAAAALRHLLADPVLPARLLPKDWPGAELRRRYDGF 236
>gi|311742201|ref|ZP_07716011.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
gi|311314694|gb|EFQ84601.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
Length=242
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/225 (48%), Positives = 131/225 (59%), Gaps = 2/225 (0%)
Query 3 AMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYR 62
++TARSVVLS+LLGAHPA L+ L +FGI +TLRVAL+RMV AGDL Y
Sbjct 12 SLTARSVVLSLLLGAHPARLPVRHLLALGEEFGISPSTLRVALSRMVAAGDLTNEGAVYA 71
Query 63 LSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREG 122
L+ R LARQ QD + P + G W +++VT G DA TRA R M +R ELREG
Sbjct 72 LTPRHLARQAAQDADLDPVELPYDGTWDLVVVTGTGRDAATRADHRAVMRARRMAELREG 131
Query 123 VWMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
VW RP LD+ + + V + AR + DLAG+LWDL W LL +
Sbjct 132 VWTRPAT--LDVVAPIGPDVEVFAARPASDVDLAGRLWDLPAWAAVADTLLATAHGGATL 189
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAM 227
RFV AAA+VRHL TDP+LP L P WP A LR AY F T +
Sbjct 190 ATRFVNAAAIVRHLRTDPVLPPSLRPRHWPAAELRRAYETFRTEL 234
>gi|262204115|ref|YP_003275323.1| PaaX domain-containing protein protein domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262087462|gb|ACY23430.1| PaaX domain protein protein domain protein [Gordonia bronchialis
DSM 43247]
Length=244
Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/233 (47%), Positives = 131/233 (57%), Gaps = 4/233 (1%)
Query 1 MPAMTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
+P ++ARS VLS+LLGA P E++ FGI E+ RVALTRMV GDL+R
Sbjct 6 VPPVSARSAVLSLLLGAQPPTLNVREIVGAMGLFGISESATRVALTRMVAGGDLLRHESA 65
Query 61 YRLSDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
Y LS+RLL RRQ++ P R W G+W M +VT+ G A R ALRT M R ELR
Sbjct 66 YTLSERLL---RRQEQVEPPARRRWSGSWEMAVVTTTGRAAADRVALRTEMTRHRIAELR 122
Query 121 EGVWMRPDNLDLDLESDVAARVRMLTAR-DEAPADLAGQLWDLSGWTEAGHRLLGDMAAA 179
EGVW RP NL + AR D PA+LA +LW+L W G L +AA
Sbjct 123 EGVWTRPANLVHHWPDRLREVSTFFEARPDGEPAELAARLWNLDAWATRGQAYLDALAAV 182
Query 180 TDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRD 232
D P RFV A V HL TDP+LP ELLPA WPG L Y D+ +A R+
Sbjct 183 HDEPTRFVTMVAAVHHLQTDPLLPTELLPAHWPGERLATIYADYRAWLAAMRE 235
>gi|271967417|ref|YP_003341613.1| PaaX family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270510592|gb|ACZ88870.1| putative transcriptional regulator, PaaX family [Streptosporangium
roseum DSM 43021]
Length=251
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 118/221 (54%), Positives = 138/221 (63%), Gaps = 1/221 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
+TARSV+LS LLG HP A L+++ A FGI E T+RVAL+RMV AGDL + Y L
Sbjct 13 LTARSVILSTLLGTHPPRLRAGRLVRVGALFGISEGTVRVALSRMVAAGDLGQPDGFYEL 72
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
S+RL RQ RQDE+ P TRAW G W + IVT+ A RAALR M R E+REGV
Sbjct 73 SERLRLRQARQDESRSPSTRAWDGAWEVAIVTAERRPAAERAALREAMAALRLAEIREGV 132
Query 124 WMRPDNLDLDLESDVAARVRMLTA-RDEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
WMRPDNL D + VA + L A +E PA LAG LWDL W L AA +
Sbjct 133 WMRPDNLSRDRPAVVAGQCAFLRAVPEEDPARLAGSLWDLPAWARHARALQSAFDAAATI 192
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDF 223
GRF +AAA +RHLL DP+LPA LLP DWPG GLR Y F
Sbjct 193 SGRFALAAAALRHLLADPLLPAGLLPGDWPGDGLRHRYDLF 233
>gi|297155150|gb|ADI04862.1| putative transcriptional regulator, PaaX family protein [Streptomyces
bingchenggensis BCW-1]
Length=273
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/221 (52%), Positives = 133/221 (61%), Gaps = 1/221 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
+TARS+VLS LLG HP A L+++ A FG E T+RVALTRMV AGDL + YRL
Sbjct 39 LTARSIVLSTLLGQHPPQLPARALVRVGALFGAAEGTVRVALTRMVAAGDLEQRGGAYRL 98
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
+DRLLARQ RQD++ PRTR W G W + +VTS A RAALR M R ELREG
Sbjct 99 TDRLLARQARQDDSRAPRTRRWDGGWEIAVVTSDRRAAPERAALRQAMAALRLAELREGT 158
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEA-PADLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
W+RP NL + A + LT E P LA +LWDL GW L + A
Sbjct 159 WLRPANLVRPRPAVAAEQCAWLTGAPEGDPVRLAARLWDLDGWAARARLLSAALERADGP 218
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDF 223
RF VAAA +RHLL DP+LP LLP+DWPGA LR Y F
Sbjct 219 AERFTVAAAALRHLLADPVLPTGLLPSDWPGADLRRRYDAF 259
>gi|289773188|ref|ZP_06532566.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289703387|gb|EFD70816.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length=250
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/221 (52%), Positives = 142/221 (65%), Gaps = 1/221 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARSVVLS+LLG HP A +L++L A F + +T R AL+RM AGDL R+ GYRL
Sbjct 15 LSARSVVLSLLLGTHPPELPARDLVRLVAGFDVGASTARAALSRMAAAGDLRRTDAGYRL 74
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
S+RLL RQRRQDEA+RP TRAW G+W L++T+ G D RA LRT + R ELREGV
Sbjct 75 SERLLERQRRQDEALRPHTRAWDGDWETLVITATGRDPAARAELRTRLAALRLAELREGV 134
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPA-DLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
W+RP NLD L +D+ L +R +PA +LA +LW L W + LL + A
Sbjct 135 WLRPANLDRPLPTDLGRVAERLVSRPGSPAVELAARLWPLVDWADTARALLVHVDRARRP 194
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDF 223
G AA+VRHLL DP+LP ELLP DWPG LR AY +
Sbjct 195 AGLLTAFAAVVRHLLADPVLPPELLPPDWPGTALRDAYARY 235
>gi|21219625|ref|NP_625404.1| hypothetical protein SCO1111 [Streptomyces coelicolor A3(2)]
gi|10803135|emb|CAC13063.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length=268
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/221 (51%), Positives = 142/221 (65%), Gaps = 1/221 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARSV+LS+LLG HP A +L++L A F + +T R AL+RM AGDL R+ GYRL
Sbjct 33 LSARSVILSLLLGTHPPELPARDLVRLVAGFDVGASTARAALSRMAAAGDLRRTDTGYRL 92
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
S+RLL RQRRQDEA+RP TRAW G+W L++T+ G D RA LRT + R ELREGV
Sbjct 93 SERLLERQRRQDEALRPHTRAWDGDWETLVITATGRDPAARAELRTRLAALRLAELREGV 152
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPA-DLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
W+RP NLD L +D+ L +R +PA +LA +LW L W + LL + A
Sbjct 153 WLRPANLDRPLPTDLGRVAERLVSRPGSPAVELAARLWPLVDWADTARALLVHVDRARRP 212
Query 183 PGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDF 223
G AA+VRHLL DP+LP ELLP DWPG LR AY +
Sbjct 213 AGLLTAFAAVVRHLLADPVLPPELLPPDWPGTALRDAYARY 253
>gi|326328697|ref|ZP_08195036.1| hypothetical protein NBCG_00136 [Nocardioidaceae bacterium Broad-1]
gi|325953507|gb|EGD45508.1| hypothetical protein NBCG_00136 [Nocardioidaceae bacterium Broad-1]
Length=241
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/228 (47%), Positives = 133/228 (59%), Gaps = 5/228 (2%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARS +LS++LGAHP T ++L + FGI T+RVA R V GDL R+ GYRL
Sbjct 11 LSARSTILSLMLGAHPNPLTPADLARAGQFFGIAPATVRVAAARAVSDGDLRRTGAGYRL 70
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
+RL+ RQ QDEA+ + W G+W M +V + G RA LR + R ELREGV
Sbjct 71 GERLVQRQAHQDEAVHTADKPWDGSWEMAVVVAAGRPGPERAVLRDALKAHRLAELREGV 130
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEA-PADLAGQLWDLSGWTEAGHRLLGDMAAATDM 182
W RP NL SD +R TA E P +LA LWDL GW G RLL ++ AAT
Sbjct 131 WTRPANLQRPRFSDPV--LRDFTATPEQDPVELAASLWDLGGWAREGERLL-ELLAATPQ 187
Query 183 PG-RFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAK 229
P R AAA+VRHL DP+LP EL PADWP A LR Y + +++
Sbjct 188 PALRLATAAAIVRHLSEDPLLPLELRPADWPAAALRETYSAYQRELSE 235
>gi|291441088|ref|ZP_06580478.1| PaaX domain-containing protein [Streptomyces ghanaensis ATCC
14672]
gi|291343983|gb|EFE70939.1| PaaX domain-containing protein [Streptomyces ghanaensis ATCC
14672]
Length=215
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/155 (51%), Positives = 100/155 (65%), Gaps = 0/155 (0%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARSVVLS+LLG HP EL +L F + +TLR AL+RMV AGDL+R+ GYRL
Sbjct 17 LSARSVVLSLLLGTHPPELATRELGRLVEGFDVGGSTLRAALSRMVAAGDLLRTDTGYRL 76
Query 64 SDRLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGV 123
SDRL+ RQ RQDEA+RPRTR W G+W M+++T+ G RA R + R ELREGV
Sbjct 77 SDRLVRRQHRQDEAVRPRTREWDGDWEMVVITATGRGPAERADTRAQLAALRLAELREGV 136
Query 124 WMRPDNLDLDLESDVAARVRMLTARDEAPADLAGQ 158
W+RP NL L + + R+ TAR PA G+
Sbjct 137 WLRPANLSRPLPAGLDRVARLCTARPAGPARGTGR 171
>gi|118619919|ref|YP_908251.1| hypothetical protein MUL_4885 [Mycobacterium ulcerans Agy99]
gi|118572029|gb|ABL06780.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=268
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/245 (38%), Positives = 120/245 (49%), Gaps = 18/245 (7%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARSV+ S LLGA A T +EL+ + + FGI + R L RMV +G+L Y L
Sbjct 18 LSARSVLASALLGADQARLTVAELVAVASLFGISDGAARTCLWRMVSSGELTSGEGSYAL 77
Query 64 SDRLLARQRRQDEAMRPRTRA---WHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
+ LL R++R DEA R A W W + +V+ A R LR ELR
Sbjct 78 AGHLLERRQRVDEASRIADTAVGSWDRTWELAVVSLDRRSAADRLELRKAAMALHLAELR 137
Query 121 EGVWMRPDNLD---LDLESDVAAR--VRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGD 175
EGVW+RPDNLD L + V R + A + AD A L+ L W L+
Sbjct 138 EGVWIRPDNLDPQRLPISRSVLDRQCIHFHGATTDISADKASSLFSLDEWAANALALIQA 197
Query 176 MAAATDMPGR----------FVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFAT 225
M A D R F ++ A+VRHL DP+LPAEL+ DWPG LR+ Y
Sbjct 198 MDAELDRSSRDVSAQRSSYQFALSIAVVRHLQRDPLLPAELIGDDWPGHPLRSTYLRLDE 257
Query 226 AMAKR 230
A +R
Sbjct 258 AFKRR 262
>gi|183980262|ref|YP_001848553.1| hypothetical protein MMAR_0229 [Mycobacterium marinum M]
gi|183173588|gb|ACC38698.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=268
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/245 (38%), Positives = 120/245 (49%), Gaps = 18/245 (7%)
Query 4 MTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL 63
++ARSV+ S LLGA A T +EL+ + + FGI + R L RMV +G+L Y L
Sbjct 18 LSARSVLASALLGADQARLTVAELVAVASLFGISDGAARTCLWRMVSSGELTGGEGSYAL 77
Query 64 SDRLLARQRRQDEAMRPRTRA---WHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELR 120
+ LL R++R DEA R A W W + +V+ A R LR ELR
Sbjct 78 AGHLLERRQRVDEASRIADTAVGSWDRTWELAVVSLDRRSAADRLELRKAAMALHLAELR 137
Query 121 EGVWMRPDNLD---LDLESDVAAR--VRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGD 175
EGVW+RPDNLD L + V R + A + AD A L+ L W L+
Sbjct 138 EGVWVRPDNLDPQRLPISRSVLDRQCIHFHGAATDISADKASSLFSLDEWAADALALIQA 197
Query 176 MAAATDMPGR----------FVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFAT 225
M A D R F ++ A+VRHL DP+LPAEL+ DWPG LR+ Y
Sbjct 198 MDAELDRSSRDVSAQRSSYQFALSIAVVRHLQRDPLLPAELIGDDWPGHPLRSTYLRLDE 257
Query 226 AMAKR 230
A +R
Sbjct 258 AFKRR 262
>gi|149182069|ref|ZP_01860554.1| repressor in the phenylacetic acid catabolism [Bacillus sp. SG-1]
gi|148850248|gb|EDL64413.1| repressor in the phenylacetic acid catabolism [Bacillus sp. SG-1]
Length=286
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/244 (28%), Positives = 98/244 (41%), Gaps = 37/244 (15%)
Query 27 LIQLTADFGIKETTLRVALTRMVGAGDLVRSADG----YRLSDRLLARQRRQDEA----M 78
LI+L +FG + +R A++RM G + G Y L+DR L +R +EA
Sbjct 22 LIKLLREFGHNDQAVRAAISRMNKQGWVQAEKQGNKSYYSLTDRGL---KRMEEAAQRIF 78
Query 79 RPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGVWMRPDNL-----DLD 133
+ +T W G W +L+ T R LR + FG L W+ P+NL DL
Sbjct 79 KLQTETWDGQWRILMYTIPEEIRNVRDELRKELVWSGFGTLSNSCWISPNNLEKQVYDLI 138
Query 134 LESDVAARVRMLTARDEAPAD---LAGQLWDLSGWTEAGHRLL----------------G 174
+ D+ V A+ + P + + + WDL E + G
Sbjct 139 DKYDIKQYVDFFIAKYDGPNEDQHIISKSWDLKEINERYEEFISDYSQKYVIDKNKIEKG 198
Query 175 DMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAKRRDAT 234
+M A R + + L DP LP ELLP W G + DF +A R A+
Sbjct 199 EMTEAECFVERTKLVHEYRKFLFVDPGLPEELLPEKWLGGHAATLFSDFYKVLA--RPAS 256
Query 235 QLLE 238
Q E
Sbjct 257 QFFE 260
>gi|261420235|ref|YP_003253917.1| PaaX family transcriptional regulator [Geobacillus sp. Y412MC61]
gi|319767045|ref|YP_004132546.1| PaaX family transcriptional regulator [Geobacillus sp. Y412MC52]
gi|261376692|gb|ACX79435.1| transcriptional regulator, PaaX family [Geobacillus sp. Y412MC61]
gi|317111911|gb|ADU94403.1| transcriptional regulator, PaaX family [Geobacillus sp. Y412MC52]
Length=285
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/257 (26%), Positives = 103/257 (41%), Gaps = 32/257 (12%)
Query 4 MTARSVVLSVL---LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
M RS++ ++ + + LI+L +FG + +R A++RM G + G
Sbjct 1 MNTRSLIFTIYGDYIRRYGGEIWIGSLIRLLREFGHNDQAVRAAVSRMSKQGWIQAEKRG 60
Query 61 YRLSDRLLARQ-RRQDEAMR----PRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKR 115
+ L AR +R +EA R R W G W +LI T R LR +
Sbjct 61 NKSYYSLTARGVKRMEEAARRIYKTRPEHWDGKWRILIYTIPEEKRHLRDELRKELVWSG 120
Query 116 FGELREGVWMRPDNL-----DLDLESDVAARVRMLTARDEAP---ADLAGQLWDLSGWTE 167
FG + W+ P+NL DL + D+ V A + P L + W+L E
Sbjct 121 FGTMSNSCWISPNNLEQQVYDLIDKYDIRPYVDFFLAEYDGPHTNKQLVEKCWNLEEMNE 180
Query 168 AGHRLL----------------GDMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADW 211
+ + G+M+ A R + + L DP LP ELLP +W
Sbjct 181 KYEQFIAVYSQKYVIDKHKIERGEMSDAECFVERTKLVHEYRKFLFIDPGLPEELLPNEW 240
Query 212 PGAGLRAAYHDFATAMA 228
G+ A ++D+ +A
Sbjct 241 MGSHAAALFNDYYQQLA 257
>gi|56420569|ref|YP_147887.1| repressor in the phenylacetic acid catabolism [Geobacillus kaustophilus
HTA426]
gi|56380411|dbj|BAD76319.1| repressor in the phenylacetic acid catabolism [Geobacillus kaustophilus
HTA426]
Length=285
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/261 (26%), Positives = 108/261 (42%), Gaps = 40/261 (15%)
Query 4 MTARSVVLSVL---LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
M RS++ ++ + + LI+L +FG + +R A++RM G + G
Sbjct 1 MNTRSMIFTIYGDYIRHYGGEIWIGSLIRLLREFGHNDQAVRAAVSRMSKQGWIRAEKRG 60
Query 61 ----YRLSDRLLARQRRQDEAMR----PRTRAWHGNWHMLIVTSIGTDAR-TRAALRTCM 111
Y L++R + +R +EA R R W G W +LI T I D R R LR +
Sbjct 61 NKSYYSLTERGV---KRMEEAARRIYKTRPEHWDGKWRILIYT-IPEDKRHLRDELRKEL 116
Query 112 HHKRFGELREGVWMRPDNL-----DLDLESDVAARVRMLTARDEAP---ADLAGQLWDLS 163
FG + W+ P+NL DL + D+ V A + P L + W+L
Sbjct 117 VWSGFGTISNSCWISPNNLEQQVYDLIDKYDIRPYVDFFLAEYDGPHTNKQLVEKCWNLE 176
Query 164 GWTEAGHRLL----------------GDMAAATDMPGRFVVAAAMVRHLLTDPMLPAELL 207
+ + + G+M+ A R + + L DP LP ELL
Sbjct 177 EINQKYEQFIAVYSQKYVIDKHKIERGEMSDAECFVERTKLVHEYRKFLFIDPGLPEELL 236
Query 208 PADWPGAGLRAAYHDFATAMA 228
P +W G+ A ++D+ +A
Sbjct 237 PNEWMGSHAAALFNDYYQQLA 257
>gi|345011972|ref|YP_004814326.1| PaaX family transcriptional regulator [Streptomyces violaceusniger
Tu 4113]
gi|344038321|gb|AEM84046.1| transcriptional regulator, PaaX family [Streptomyces violaceusniger
Tu 4113]
Length=274
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/247 (30%), Positives = 111/247 (45%), Gaps = 30/247 (12%)
Query 2 PAMTARSVVLSVL----LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRS 57
PA+ +S++LS L LG T S +I++ G+ E R LTRMVG G L R
Sbjct 6 PALRPQSLLLSFLGDEVLGRGVCVYTGS-VIEVFRRAGVGEQATRSTLTRMVGRGLLSRR 64
Query 58 ADGYR----LSDR---LLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTC 110
+G R L+DR +L R+ R W G W +L + + R R LR+
Sbjct 65 REGRRTYIGLTDRSEAILRDGERRVWKTGAVNREWDGTWTLLGFSLPESWQRQRHDLRSQ 124
Query 111 MHHKRFGELREGVWMRPDNLDLD---LESDVAARVRMLTARDEAPADLAGQL---WDLSG 164
+ FG L G+W+ P +D+ E +AA V++ A +A D+A + WDL
Sbjct 125 LTWAGFGALFSGLWIAPGEVDVSGLVAELGLAAHVKVFRAHADAGVDIAEMVDDTWDLHA 184
Query 165 WTEAGHRLLG-----------DMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPG 213
AG+R D++ + R + A ++ + +DP LP LP DWP
Sbjct 185 -LGAGYRDFDASWRPYASGRVDLSGEDALALRLRLTAEWLQVIRSDPRLPVRHLPEDWPA 243
Query 214 AGLRAAY 220
AG +
Sbjct 244 AGAEETF 250
>gi|345022586|ref|ZP_08786199.1| repressor [Ornithinibacillus sp. TW25]
Length=282
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/247 (27%), Positives = 103/247 (42%), Gaps = 34/247 (13%)
Query 27 LIQLTADFGIKETTLRVALTRMVGAG----DLVRSADGYRLSDRLLARQRRQDEAM-RPR 81
LI+L +FG E ++R AL+RM G + V + Y L++R AR + + +
Sbjct 31 LIRLLEEFGHNEQSVRAALSRMSKQGWIQAEKVGNKSYYSLTERGQARMEEASKRIYKTE 90
Query 82 TRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGVWMRPDNLD-----LDLES 136
+W G W +L+ T R LR + FG L W+ P+ L+ L +
Sbjct 91 HPSWDGQWRILVYTIPENKRHLRDELRKELVWSGFGLLSNSCWITPNPLEEQVNRLIEKY 150
Query 137 DVAARVRMLTAR---DEAPADLAGQLWDLSGWTEAGHRLLGDMAAATDMP---------- 183
D++ V A + +L + W+L E + + + +
Sbjct 151 DISEYVSFFNASYIGKNSQDELIQKCWNLDEVNEKYQLFIQEYSQKYVIDKNKIEKGELT 210
Query 184 -GRFVVAAAMVRH-----LLTDPMLPAELLPADWPG---AGLRAAYHDFATAMAKR--RD 232
G V +AM+ H L DP LP ELLPA W G A L Y+ T AKR ++
Sbjct 211 DGSCFVKSAMLVHQYRKFLFIDPNLPQELLPAKWLGDSAASLFNDYYKMLTEPAKRFFKE 270
Query 233 ATQLLEV 239
+L E+
Sbjct 271 VFELGEI 277
>gi|46201959|ref|ZP_00208324.1| COG3327: Phenylacetic acid-responsive transcriptional repressor
[Magnetospirillum magnetotacticum MS-1]
Length=306
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/244 (30%), Positives = 99/244 (41%), Gaps = 32/244 (13%)
Query 6 ARSVVLSVL---LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYR 62
A+S++++V + H A +I L G+ E +R ++ R+ L G R
Sbjct 16 AKSLIITVYGDAISHHGGSAWLGSVINLVEPLGLNERIVRTSVFRLSKEAWLSSMQIGRR 75
Query 63 LSDRLLARQRRQDEAMRPRT-----RAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFG 117
RL RR+ EA R + W G W + + G DA R +LR + FG
Sbjct 76 SYYRLTEMGRRRFEAAHNRIYHYNGKPWDGRWTLAVTNIDGMDAERRDSLRRDLGWLGFG 135
Query 118 ELREGVWMRPDNLDLDL-----ESDVAARVRMLTA------RDEAPADLAGQLWDLSGWT 166
+L GV + PD + E+ V R M+TA EA DL WDL
Sbjct 136 QLASGVMVHPDPDQSAVRQALAEAGVQDRAVMMTAAAEDWVTPEALRDLIHTCWDLERLA 195
Query 167 EAGHRLL-------------GDMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPG 213
+ L GD+ R ++ R LL DPMLP ELLPA+WPG
Sbjct 196 SDYNEFLDTFRPLWQVLSGNGDLDPQMCFVVRTLLMHGYRRALLRDPMLPDELLPANWPG 255
Query 214 AGLR 217
R
Sbjct 256 TSAR 259
>gi|312110581|ref|YP_003988897.1| PaaX family transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|336235030|ref|YP_004587646.1| transcriptional regulator, PaaX family [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215682|gb|ADP74286.1| transcriptional regulator, PaaX family [Geobacillus sp. Y4.1MC1]
gi|335361885|gb|AEH47565.1| transcriptional regulator, PaaX family [Geobacillus thermoglucosidasius
C56-YS93]
Length=293
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/263 (24%), Positives = 105/263 (40%), Gaps = 42/263 (15%)
Query 3 AMTARSVVLSVL-----LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRS 57
+M RS++ ++ + W + LI+L +FG + +R A++RM G +
Sbjct 2 SMNTRSMIFTIYGDYIRHYGNKIWIGS--LIRLLKEFGHNDQAVRAAVSRMSKQGWVKAE 59
Query 58 ADG----YRLSDRLLARQRRQDEA----MRPRTRAWHGNWHMLIVTSIGTDARTRAALRT 109
G Y L++R + +R +EA + R W G W +L+ T R LR
Sbjct 60 KKGNKSYYSLTERGI---KRMEEAAKRIYKIRPEKWDGKWRILVYTIPEEIRNVRDELRK 116
Query 110 CMHHKRFGELREGVWMRPDNL-----DLDLESDVAARVRMLTARDEAP---ADLAGQLWD 161
+ FG + W+ P+NL DL + ++ V A+ + P L + WD
Sbjct 117 ELVWSGFGTISNSCWISPNNLEKQVYDLIDKYEIEPYVDFFIAQYDGPHTNKRLVEKCWD 176
Query 162 LSGWTEAGHRLL----------------GDMAAATDMPGRFVVAAAMVRHLLTDPMLPAE 205
L + + G+M+ A R + + L DP LP E
Sbjct 177 LDEINQKYEEFISIYSQKYIIDKHKIQRGEMSDAECFVERTKLVHEYRKFLFIDPGLPEE 236
Query 206 LLPADWPGAGLRAAYHDFATAMA 228
LLP W G+ A + ++ +A
Sbjct 237 LLPKQWMGSHAAALFSEYYKELA 259
>gi|319653220|ref|ZP_08007322.1| repressor in the phenylacetic acid catabolism [Bacillus sp. 2_A_57_CT2]
gi|317395141|gb|EFV75877.1| repressor in the phenylacetic acid catabolism [Bacillus sp. 2_A_57_CT2]
Length=291
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/259 (25%), Positives = 106/259 (41%), Gaps = 34/259 (13%)
Query 4 MTARSVVLSVLLGAHPAWATAS----ELIQLTADFGIKETTLRVALTRMVGAGDLVRSAD 59
M RS++ + L G + + ++ LI+L ++FG + ++R A++RM G +
Sbjct 1 MNTRSMIFT-LYGDYISHYGSNIWIGSLIKLLSEFGHNDQSVRAAISRMNKQGWVSAEKI 59
Query 60 GYRLSDRLLAR-QRRQDEA----MRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHK 114
G + L R Q+R +EA + + W G W ML+ T R LR +
Sbjct 60 GNKSYYSLTPRGQKRIEEAAKRIFKLKPEEWDGKWRMLMYTIPEEIRNVRDELRKELVWS 119
Query 115 RFGELREGVWMRPDNL-----DLDLESDVAARVRMLTARDEAP---ADLAGQLWDLSGWT 166
FG + W+ +NL DL + ++A V AR P ++ + W+L+
Sbjct 120 GFGSMSSSCWISANNLEKQVFDLIEKYEIADYVDFFIARYAGPHKNIEIVEKSWNLTEIN 179
Query 167 EAGHRLL----------------GDMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPAD 210
E + G+M A R + + L DP LP ELLP
Sbjct 180 ERYQEFISEYSQKYIIDKNKIQKGNMTDAECFVERTKLVHEYRKFLFVDPGLPEELLPDK 239
Query 211 WPGAGLRAAYHDFATAMAK 229
W G A + ++ +A+
Sbjct 240 WLGGHAAALFSEYYKELAE 258
>gi|138895566|ref|YP_001126019.1| putative regulator [Geobacillus thermodenitrificans NG80-2]
gi|196249666|ref|ZP_03148363.1| transcriptional regulator, PaaX family [Geobacillus sp. G11MC16]
gi|134267079|gb|ABO67274.1| Putative regulator [Geobacillus thermodenitrificans NG80-2]
gi|196210960|gb|EDY05722.1| transcriptional regulator, PaaX family [Geobacillus sp. G11MC16]
Length=288
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/261 (26%), Positives = 107/261 (41%), Gaps = 40/261 (15%)
Query 4 MTARSVVLSVL---LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
M RS++ ++ + + LI+L +FG + +R A++RM G + G
Sbjct 1 MNTRSMIFTIYGDYIRHYGGEIWIGSLIRLLREFGHNDQAVRAAVSRMSKQGWIRAEKRG 60
Query 61 ----YRLSDRLLARQRRQDEAMR----PRTRAWHGNWHMLIVTSIGTDART-RAALRTCM 111
Y L++R + +R +EA R R W G W +LI T I D R R LR +
Sbjct 61 NKSYYSLTERGV---KRMEEAARRIYKTRPEHWDGKWRILIYT-IPEDKRHLRDELRKEL 116
Query 112 HHKRFGELREGVWMRPDNL-----DLDLESDVAARVRMLTARDEAP---ADLAGQLWDLS 163
FG + W+ P+NL DL + + V A + P L + W+L
Sbjct 117 VWSGFGTISNSCWISPNNLEQQVYDLIDKYHIHPYVDFFLAEYDGPHMNKQLVEKCWNLE 176
Query 164 GWTEAGHRLL----------------GDMAAATDMPGRFVVAAAMVRHLLTDPMLPAELL 207
+ + + G+M+ A R + + L DP LP ELL
Sbjct 177 EINQKYEQFIVTYSQKYVIDKHKIERGEMSDAECFVERTKLVHEYRKFLFIDPGLPEELL 236
Query 208 PADWPGAGLRAAYHDFATAMA 228
P +W G+ A ++D+ +A
Sbjct 237 PDEWMGSHAAALFNDYYQQLA 257
>gi|83311113|ref|YP_421377.1| phenylacetic acid-responsive transcriptional repressor [Magnetospirillum
magneticum AMB-1]
gi|82945954|dbj|BAE50818.1| Phenylacetic acid-responsive transcriptional repressor [Magnetospirillum
magneticum AMB-1]
Length=308
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/249 (31%), Positives = 100/249 (41%), Gaps = 44/249 (17%)
Query 6 ARSVVLSVL---LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYR 62
A+S++++V + H A +I L G+ E +R ++ R+ L G R
Sbjct 20 AKSLIITVYGDAISHHGGSAWLGSVINLVEPLGLNERIVRTSVFRLSKEAWLSSMQIGRR 79
Query 63 LSDRLLARQRRQDEAMRPRT-----RAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFG 117
RL RR+ EA R + W G W + + G DA R +LR + FG
Sbjct 80 SYYRLTEMGRRRFEAAHNRIYHFNGKPWDGRWTLAVTNIEGMDAERRDSLRRDLGWLGFG 139
Query 118 ELREGVWMRPDNLDLDL---ESDVAARVRMLTAR------DEAPADLAGQLWDLSGWTEA 168
+L GV + PD + E+ V R M+ A EA DL WDL
Sbjct 140 QLASGVLVHPDRSAVRQALAEAGVQDRAVMMVASAEDWVTPEALRDLIHTCWDLD----- 194
Query 169 GHRLLGDM----------------AAATDMPGRFVVAAAMV----RHLLTDPMLPAELLP 208
RL GD A D FVV ++ R LL DPMLP ELLP
Sbjct 195 --RLAGDYNEFLDTFRPLWQALSGAGELDPQMCFVVRTLLMHGYRRALLRDPMLPDELLP 252
Query 209 ADWPGAGLR 217
A WPG R
Sbjct 253 AHWPGTSAR 261
>gi|144898613|emb|CAM75477.1| Phenylacetic acid-responsive transcriptional repressor [Magnetospirillum
gryphiswaldense MSR-1]
Length=315
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/247 (31%), Positives = 101/247 (41%), Gaps = 38/247 (15%)
Query 6 ARSVVLSVLLGA---HPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYR 62
A+S++++V A H A LI+L FG+ E +R ++ R+ L S G R
Sbjct 22 AKSLIVTVYGDAILPHGGSAWLGSLIRLVEPFGLNERIVRTSVFRLSKEDWLTSSHVGRR 81
Query 63 LSDRLLARQRRQDEAMRPRT-----RAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFG 117
L RR+ EA R R W W M+ GT+ R ALR + FG
Sbjct 82 SYYSLTETGRRRFEAAHRRIYSYARRPWDKQWTMVFTNLTGTEGERREALRRDLGWLGFG 141
Query 118 ELREGVWMRPD-------NLDLDLESDVAARVRMLTARD----EAPADLAGQLWDLSGWT 166
+L GV + PD +D E+ A V +A EA D+ WD
Sbjct 142 QLSPGVMLHPDPDQAAVRQALIDAEAGEQAVVMRASAESWVAPEALRDVIRTCWDQD--- 198
Query 167 EAGHRLLG------------DMAAATDMPGRFVVAAAMV----RHLLTDPMLPAELLPAD 210
H LG D + D F+V + ++ R LL DPMLP ELL D
Sbjct 199 RLAHDYLGFLDIFRPLWRALDGLSEPDPETCFLVRSLLIHGYRRALLRDPMLPDELLAPD 258
Query 211 WPGAGLR 217
WPGA R
Sbjct 259 WPGAAAR 265
>gi|297529806|ref|YP_003671081.1| PaaX family transcriptional regulator [Geobacillus sp. C56-T3]
gi|297253058|gb|ADI26504.1| transcriptional regulator, PaaX family [Geobacillus sp. C56-T3]
Length=285
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/257 (24%), Positives = 101/257 (40%), Gaps = 32/257 (12%)
Query 4 MTARSVVLSVL---LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG 60
M RS++ ++ + + LI+L +FG + +R A++RM G + G
Sbjct 1 MNTRSLIFTIYGDYIRRYGGEIWIGSLIRLLREFGHNDQAVRAAVSRMSKQGWIRAEKRG 60
Query 61 YRLSDRLLARQ-RRQDEAMR----PRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKR 115
+ L R +R +EA R R W G W +L+ T R LR +
Sbjct 61 NKSYYSLTVRGVKRMEEAARRIYKTRPEHWDGKWRILVYTIPENKRHLRDELRKELVWSG 120
Query 116 FGELREGVWMRPDNL-----DLDLESDVAARVRMLTARDEAP---ADLAGQLWDLSGWTE 167
FG + W+ P++L DL + D+ V A + P L W+L +
Sbjct 121 FGTISNSCWISPNDLKQQVYDLIDKYDIRPYVDFFLAEYDGPHTNKRLVETCWNLDEINQ 180
Query 168 AGHRLL----------------GDMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADW 211
+ + G+M+ A R + + L DP LP ELLP +W
Sbjct 181 KYEQFIAVYSQKYVIDKHKIERGEMSDAECFVERTKLVHEYRKFLFIDPGLPEELLPNEW 240
Query 212 PGAGLRAAYHDFATAMA 228
G+ A ++D+ +A
Sbjct 241 MGSHAAALFNDYYQQLA 257
>gi|332284718|ref|YP_004416629.1| phenylacetic acid degradation operon negative regulatory protein
[Pusillimonas sp. T7-7]
gi|330428671|gb|AEC20005.1| phenylacetic acid degradation operon negative regulatory protein
[Pusillimonas sp. T7-7]
Length=290
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/223 (29%), Positives = 91/223 (41%), Gaps = 32/223 (14%)
Query 25 SELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRLSDRLLARQRRQDEAMRPR--- 81
S+LI+L A GI E LR ++ R+V L G R RL R E R
Sbjct 18 SKLIELVAPLGINERLLRTSVFRLVAQDWLQSERHGRRSLYRLSTHGRELTEQASGRIYD 77
Query 82 --TRAWHGNWHMLIVTSIGTDART-RAALRTCMHHKRFGELREGVWMRPDN--------- 129
+ AW GNW ++++ G + + R +R + FG + G++ P N
Sbjct 78 GPSPAWQGNWTLVVLPRFGNSSLSKRGEVRRELIWAGFGAIAPGIFALPRNQTVAAHKVL 137
Query 130 --LDLDLESDVAARVRMLTARDEAPADLAGQLWDLSGWTEAGHRLLGD----MAAATDMP 183
L L + V M ++ DL Q WDL G ++A +D
Sbjct 138 GKLKLKNHALVLGAHEMNESKGLLITDLITQCWDLDGVARQYQNFQDTFNPMLSAISD-- 195
Query 184 GRFVVAAAMVRHL---------LTDPMLPAELLPADWPGAGLR 217
G + A M+R L L DP LP ++LP DWPG G R
Sbjct 196 GMSPLQAYMIRALTLHEWRRIVLHDPQLPKQMLPQDWPGHGAR 238
>gi|229543879|ref|ZP_04432938.1| transcriptional regulator, PaaX family [Bacillus coagulans 36D1]
gi|229325018|gb|EEN90694.1| transcriptional regulator, PaaX family [Bacillus coagulans 36D1]
Length=297
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/235 (25%), Positives = 96/235 (41%), Gaps = 35/235 (14%)
Query 27 LIQLTADFGIKETTLRVALTRMVGAGDLVRSADG----YRLSDRLLARQRRQDEA----M 78
LI+L FG E ++R A++RM G + +G Y L++R + +R +EA
Sbjct 31 LIKLLEAFGHHEQSVRAAISRMSKQGWVESRKEGNNSYYSLTERGV---KRMNEAAGRIF 87
Query 79 RPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGVWMRPDNLDLDLES-- 136
+ W G W + T R LR + FG L VW+ P++L +++
Sbjct 88 KLNPGKWDGKWRFFLYTIPEKKRNIRDELRKELMWSGFGLLLNSVWLTPNDLLDEMKGII 147
Query 137 ---DVAARVRMLTARD---EAPADLAGQLWDLSGWTEAGHRLL----------------G 174
+ V++ TA + ++ +L +LWD+ + + G
Sbjct 148 DKYGINEYVKIFTAENVWGKSDKELVQELWDIDYMNDRYEDFMAHYREKYESVKEKMKRG 207
Query 175 DMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFATAMAK 229
+M R ++ + L DP LP ELLP W G A + D+ +AK
Sbjct 208 EMTNQDCFVERTMLVHNYRKLLFVDPGLPEELLPEKWKGEEAAALFRDYYRILAK 262
>gi|288959303|ref|YP_003449644.1| phenylacetic acid degradation operon negative regulatory protein
[Azospirillum sp. B510]
gi|288911611|dbj|BAI73100.1| phenylacetic acid degradation operon negative regulatory protein
[Azospirillum sp. B510]
Length=314
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/247 (31%), Positives = 104/247 (43%), Gaps = 38/247 (15%)
Query 6 ARSVVLSVLLGA---HPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG-- 60
A+S++++V A H LI+LT FG+ E +R ++ R+ L + G
Sbjct 22 AKSLIITVYGDAVLPHGGSLWLGSLIELTGLFGMSERIVRTSVFRLCKDDWLTNTQIGRR 81
Query 61 --YRLSD----RLLARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHK 114
YR++D R +RR P R W W +L++ DA TR ALR + +
Sbjct 82 SFYRVTDSGKERFATAERR---IYAPLAREWDRGWDLLMLPPNALDAETRDALRRELTWQ 138
Query 115 RFGELREGVWMRPDNLDLDL-----ESDVAAR-VRMLTARDEAPA-----DLAGQLWDLS 163
FG V+ P+ + + E VA R V M + D A DL WD+
Sbjct 139 GFGAASATVYAHPNCDEAAMHRTLAELGVADRIVHMKASLDRAEGFGALRDLVRGCWDID 198
Query 164 GWTEAGHRLLG---------DMAAATDMPGRFVVAAAMV----RHLLTDPMLPAELLPAD 210
L D A A D FV+ M+ R LL DPMLP +LLPAD
Sbjct 199 QLERDYTAFLDHFRPVWATVDGADALDPATCFVLRTLMIHDFRRILLRDPMLPPDLLPAD 258
Query 211 WPGAGLR 217
WPG R
Sbjct 259 WPGQEAR 265
>gi|293604210|ref|ZP_06686618.1| phenylacetic acid degradation operon negative regulatory protein
PaaX [Achromobacter piechaudii ATCC 43553]
gi|292817435|gb|EFF76508.1| phenylacetic acid degradation operon negative regulatory protein
PaaX [Achromobacter piechaudii ATCC 43553]
Length=309
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/247 (28%), Positives = 105/247 (43%), Gaps = 38/247 (15%)
Query 6 ARSVVLSVL---LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG-- 60
A+S+ +S+L L H +LI+L A GI E LR ++ R+V L G
Sbjct 23 AKSLCVSLLGDALAPHGGAIWLGDLIELLAPLGINERLLRTSVFRLVAQNWLQSERHGRR 82
Query 61 --YRLSDRLL-----ARQRRQDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHH 113
Y +SD+ L A QR + A T+ W+G W ++ + G RA LR +
Sbjct 83 SLYLISDQGLRHTAHASQRIYEGA----TQDWNGEWTLVALPRTGNGLAERAELRRELVW 138
Query 114 KRFGELREGVWMRPDNL-----DLDLESDVAARVRMLTARDEAPA------DLAGQLWDL 162
+ FG + G++ P D+ + + + +L+ARD A A LA Q W+L
Sbjct 139 EGFGMIAPGLFAHPHTEASAAHDILEKLGIPDKALVLSARDLAGAGGLPIASLASQCWNL 198
Query 163 SGWTEAGHRLLGDMAAATDM------PGRFVVAAAMVRH-----LLTDPMLPAELLPADW 211
E + + + P V M+ H +L DP LP +LP +W
Sbjct 199 DDVAEQYRQFSRNFGPLEKLLEEAPPPADAFVVRVMLLHNWRRIVLHDPQLPGPMLPDNW 258
Query 212 PGAGLRA 218
PG RA
Sbjct 259 PGHAARA 265
>gi|290959802|ref|YP_003490984.1| PaaX family transcriptional regulator [Streptomyces scabiei 87.22]
gi|260649328|emb|CBG72443.1| putative PaaX-like regulator [Streptomyces scabiei 87.22]
Length=284
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/247 (30%), Positives = 107/247 (44%), Gaps = 40/247 (16%)
Query 24 ASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADGYRL--------SDRLLARQRR-- 73
+ +I + G E +R LTRMV G L R +G ++ D L +R
Sbjct 38 SGSIIDVLGRVGTGEQAVRSTLTRMVNRGLLRRQREGRKMFFGLTPHAGDILRDGGQRIW 97
Query 74 QDEAMRPRTRAWHGNWHMLIVTSIGTDARTRAALRTCMHHKRFGELREGVWMRPDNLDLD 133
+D A+ W G W +L + + R R LR+ + FG L G+W+ P +D+
Sbjct 98 RDGAV---NEDWDGTWTLLGFSLPESWQRQRHDLRSRLTWSGFGALYSGLWIAPGRVDVR 154
Query 134 ---LESDVAARVRMLTARDEAPADLAGQL----WDLSG-----------WTEAGHRLLGD 175
E + A V++ A+ +A D+ GQ+ WDL G WT A D
Sbjct 155 RIVSELGLDAHVKVFHAQADAFTDV-GQMIRESWDLEGLAARYVAFDKRWTTA------D 207
Query 176 MAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYHDFA--TAMAKRRDA 233
+ AA + R + A +R + TDP LP LPA+WP + + A TA R A
Sbjct 208 LTAADPIATRLRLVAEWLRVIRTDPRLPVRHLPAEWPARQAQDTFRRIAAHTAEPAARMA 267
Query 234 TQLLEVT 240
+LE T
Sbjct 268 ADVLETT 274
Lambda K H
0.323 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 332206503090
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40