BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0677c
Length=142
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607817|ref|NP_215191.1| hypothetical protein Rv0677c [Mycob... 287 3e-76
gi|118616542|ref|YP_904874.1| transmembrane proteinm, MmpS5 [Myc... 263 7e-69
gi|120404167|ref|YP_953996.1| hypothetical protein Mvan_3188 [My... 227 5e-58
gi|108802138|ref|YP_642335.1| hypothetical protein Mmcs_5175 [My... 224 3e-57
gi|145224019|ref|YP_001134697.1| membrane family protein [Mycoba... 205 1e-51
gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegm... 180 6e-44
gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegm... 179 2e-43
gi|41407835|ref|NP_960671.1| MmpS5 [Mycobacterium avium subsp. p... 173 9e-42
gi|118462696|ref|YP_881703.1| MmpS5 protein [Mycobacterium avium... 172 1e-41
gi|296165068|ref|ZP_06847621.1| MmpS family membrane protein [My... 172 2e-41
gi|254820611|ref|ZP_05225612.1| MmpS5 protein [Mycobacterium int... 171 4e-41
gi|315442510|ref|YP_004075389.1| mycobacterium membrane protein ... 169 2e-40
gi|289760803|ref|ZP_06520181.1| LOW QUALITY PROTEIN: membrane pr... 168 3e-40
gi|333989815|ref|YP_004522429.1| transmembrane proteinm MmpS5 [M... 167 7e-40
gi|118468420|ref|YP_885767.1| MmpS5 protein [Mycobacterium smegm... 166 7e-40
gi|145223615|ref|YP_001134293.1| membrane family protein [Mycoba... 164 5e-39
gi|120402073|ref|YP_951902.1| hypothetical protein Mvan_1058 [My... 162 1e-38
gi|169631459|ref|YP_001705108.1| putative membrane protein MmpS ... 159 1e-37
gi|342859706|ref|ZP_08716359.1| MmpS5 protein [Mycobacterium col... 154 4e-36
gi|118618954|ref|YP_907286.1| membrane protein MmpS5_1 [Mycobact... 152 1e-35
gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 ... 152 2e-35
gi|183983258|ref|YP_001851549.1| transmembrane protein [Mycobact... 151 2e-35
gi|183983723|ref|YP_001852014.1| membrane protein MmpS5_1 [Mycob... 150 7e-35
gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacter... 142 2e-32
gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_1100... 141 4e-32
gi|333992781|ref|YP_004525395.1| transmembrane proteinm MmpS5 [M... 140 6e-32
gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_401... 139 2e-31
gi|183980130|ref|YP_001848421.1| membrane protein MmpS5_3 [Mycob... 138 3e-31
gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_2236... 135 3e-30
gi|333991846|ref|YP_004524460.1| hypothetical protein JDM601_320... 135 3e-30
gi|240169833|ref|ZP_04748492.1| membrane protein MmpS4_2 [Mycoba... 135 3e-30
gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycoba... 132 1e-29
gi|15607592|ref|NP_214965.1| membrane protein [Mycobacterium tub... 132 1e-29
gi|118465434|ref|YP_883027.1| MmpS4 protein [Mycobacterium avium... 129 2e-28
gi|296164372|ref|ZP_06846949.1| MmpS family membrane protein [My... 128 2e-28
gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegm... 124 5e-27
gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976... 123 9e-27
gi|254776285|ref|ZP_05217801.1| MmpS4 protein [Mycobacterium avi... 122 1e-26
gi|120404792|ref|YP_954621.1| hypothetical protein Mvan_3834 [My... 122 1e-26
gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bov... 122 2e-26
gi|342859455|ref|ZP_08716109.1| membrane transporter [Mycobacter... 121 3e-26
gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 ... 121 3e-26
gi|118464951|ref|YP_880981.1| Mmps1 protein [Mycobacterium avium... 121 3e-26
gi|183980796|ref|YP_001849087.1| membrane protein MmpS4_2 [Mycob... 121 4e-26
gi|118617881|ref|YP_906213.1| membrane protein MmpS4 [Mycobacter... 121 4e-26
gi|254818587|ref|ZP_05223588.1| membrane protein MmpS1 [Mycobact... 121 4e-26
gi|296165037|ref|ZP_06847592.1| MmpS family membrane protein [My... 120 5e-26
gi|169631388|ref|YP_001705037.1| MmpS family protein [Mycobacter... 120 5e-26
gi|41408336|ref|NP_961172.1| hypothetical protein MAP2238 [Mycob... 120 7e-26
gi|336458226|gb|EGO37207.1| Mycobacterium membrane protein [Myco... 120 7e-26
>gi|15607817|ref|NP_215191.1| hypothetical protein Rv0677c [Mycobacterium tuberculosis H37Rv]
gi|15840080|ref|NP_335117.1| MmpS family membrane protein [Mycobacterium tuberculosis CDC1551]
gi|31791861|ref|NP_854354.1| hypothetical protein Mb0696c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=142
Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV
Sbjct 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG
Sbjct 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
Query 121 EVKDERTATGVDALTYCFVKSA 142
EVKDERTATGVDALTYCFVKSA
Sbjct 121 EVKDERTATGVDALTYCFVKSA 142
>gi|118616542|ref|YP_904874.1| transmembrane proteinm, MmpS5 [Mycobacterium ulcerans Agy99]
gi|183981027|ref|YP_001849318.1| transmembrane proteinm, MmpS5 [Mycobacterium marinum M]
gi|118568652|gb|ABL03403.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium ulcerans
Agy99]
gi|183174353|gb|ACC39463.1| conserved transmembrane proteinm, MmpS5 [Mycobacterium marinum
M]
Length=142
Score = 263 bits (671), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 126/142 (89%), Positives = 137/142 (97%), Gaps = 0/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MIG LKRAWIPLLILVVVAIAGFTVQRIRTFFG++GILVTPKVFA+DPEP+DPKVV+YE+
Sbjct 1 MIGILKRAWIPLLILVVVAIAGFTVQRIRTFFGADGILVTPKVFANDPEPYDPKVVKYEI 60
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
SGSGSY NINYLDLDAKPQRIDGA+LPWSLTL+TTAPSAAPNILAQG+G+SI+CRI VD
Sbjct 61 SGSGSYANINYLDLDAKPQRIDGASLPWSLTLQTTAPSAAPNILAQGNGSSISCRIIVDD 120
Query 121 EVKDERTATGVDALTYCFVKSA 142
VKDERTATGVDALTYCFVKSA
Sbjct 121 VVKDERTATGVDALTYCFVKSA 142
>gi|120404167|ref|YP_953996.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
gi|119956985|gb|ABM13990.1| hypothetical protein Mvan_3188 [Mycobacterium vanbaalenii PYR-1]
Length=142
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/142 (75%), Positives = 125/142 (89%), Gaps = 0/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MI K+ W+PLLI+VVVAIAG TV RIRTFFG+EGI+ TP+ FAD PEPFDPKVV YE+
Sbjct 1 MIAIAKKVWLPLLIVVVVAIAGLTVARIRTFFGAEGIIETPRNFADLPEPFDPKVVRYEI 60
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
+GSGSY ++NYLDLDAKPQR+DGAALPWSLTL+TT PSAAPNI+AQGDG++ITCRI VD
Sbjct 61 TGSGSYADVNYLDLDAKPQRVDGAALPWSLTLETTEPSAAPNIVAQGDGSTITCRIFVDD 120
Query 121 EVKDERTATGVDALTYCFVKSA 142
E+KDERT G++A T+CFVKSA
Sbjct 121 ELKDERTTDGLNAQTFCFVKSA 142
>gi|108802138|ref|YP_642335.1| hypothetical protein Mmcs_5175 [Mycobacterium sp. MCS]
gi|119871291|ref|YP_941243.1| hypothetical protein Mkms_5264 [Mycobacterium sp. KMS]
gi|126438119|ref|YP_001073810.1| membrane family protein [Mycobacterium sp. JLS]
gi|108772557|gb|ABG11279.1| Mycobacterium membrane [Mycobacterium sp. MCS]
gi|119697380|gb|ABL94453.1| Mycobacterium membrane family protein [Mycobacterium sp. KMS]
gi|126237919|gb|ABO01320.1| membrane family protein [Mycobacterium sp. JLS]
Length=142
Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/142 (77%), Positives = 124/142 (88%), Gaps = 0/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
M+ K+AWIP++++VVV IAGFTV RIR FFG++GI VTP+VFADDPEPFDPKVV YE+
Sbjct 1 MLSVAKKAWIPIVVVVVVLIAGFTVHRIRGFFGADGITVTPRVFADDPEPFDPKVVRYEI 60
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
+GSGSY NINYLDLD+KPQR+D ALPW +TL+TT SAAPNI AQGDG SITCRI VD
Sbjct 61 TGSGSYANINYLDLDSKPQRLDNTALPWEITLETTEASAAPNIFAQGDGDSITCRIIVDD 120
Query 121 EVKDERTATGVDALTYCFVKSA 142
EVKDERTATGV+ALTYCFVKSA
Sbjct 121 EVKDERTATGVNALTYCFVKSA 142
>gi|145224019|ref|YP_001134697.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
gi|315444356|ref|YP_004077235.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
gi|145216505|gb|ABP45909.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
gi|315262659|gb|ADT99400.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
Length=142
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/142 (74%), Positives = 122/142 (86%), Gaps = 0/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MI K+ W+PLLI+VVV IAG TV RIRTFFGSEGI+ TP+ FAD PEPFDPKVV YE+
Sbjct 1 MIAIGKKVWLPLLIVVVVVIAGATVSRIRTFFGSEGIIETPRNFADLPEPFDPKVVRYEI 60
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
G+GSY ++NYLDLDAKPQR+DGAALPWSLTL+TT PSAAPNI+AQGD ++ITCRI VD
Sbjct 61 IGNGSYADVNYLDLDAKPQRVDGAALPWSLTLETTEPSAAPNIVAQGDSSTITCRIFVDD 120
Query 121 EVKDERTATGVDALTYCFVKSA 142
E+KDERT G++A T+CFVKSA
Sbjct 121 ELKDERTTDGLNAQTFCFVKSA 142
>gi|118471113|ref|YP_884641.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
gi|118172400|gb|ABK73296.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=142
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 92/141 (66%), Positives = 111/141 (79%), Gaps = 5/141 (3%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGS--EGILVTPKVFADDPEPFDPKVVEYEVSG 62
LKR WIPLLI VVV + FTV R+RTFFGS + L + KV DD +PFDPKVV YE+ G
Sbjct 4 LKRFWIPLLIGVVVLVGAFTVMRVRTFFGSGDDPSLASAKV--DDTKPFDPKVVIYEIYG 61
Query 63 S-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGE 121
G+ ++NYLDLDA+PQR+DG +LPW+LTL TTAPS PNI+AQG+G SITCRITVD E
Sbjct 62 EPGATADVNYLDLDAQPQRVDGVSLPWTLTLSTTAPSVFPNIVAQGNGDSITCRITVDDE 121
Query 122 VKDERTATGVDALTYCFVKSA 142
+KDERT+ GV+A T+C VKSA
Sbjct 122 LKDERTSNGVNAQTFCLVKSA 142
>gi|118470714|ref|YP_887799.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
gi|118172001|gb|ABK72897.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=158
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 109/140 (78%), Gaps = 5/140 (3%)
Query 6 KRAWIPLLILVVVAIAGFTVQRIRTFFGS--EGILVTPKVFADDPEPFDPKVVEYEVSGS 63
+R WIPLLI VV + FTV R+RTFFGS + L + KV DD +PFDPKVV YE+ G
Sbjct 21 RRFWIPLLIGAVVFVGAFTVMRVRTFFGSGDDPSLASAKV--DDTKPFDPKVVVYEIYGE 78
Query 64 -GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEV 122
G+ +INYLDLDA+PQR+DGA LPWSLTL TTAPS PNI+AQG+G +ITCRITVD E+
Sbjct 79 PGATADINYLDLDAQPQRVDGATLPWSLTLSTTAPSVFPNIVAQGNGDTITCRITVDDEL 138
Query 123 KDERTATGVDALTYCFVKSA 142
KDERT+ GV+A T+C VKSA
Sbjct 139 KDERTSNGVNAQTFCLVKSA 158
>gi|41407835|ref|NP_960671.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254775167|ref|ZP_05216683.1| MmpS5 protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|41396189|gb|AAS04054.1| MmpS5 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=138
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 104/140 (75%), Gaps = 4/140 (2%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSE--GILVTPKVFADDPEPFDPKVVEYEVSG 62
++ AW+PLLI+ VV + GF V R+++FFG+ GIL +P++ DD +PF PKVV+YEV G
Sbjct 1 MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDTGILTSPRL--DDSKPFKPKVVKYEVFG 58
Query 63 SGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEV 122
S S N+NYLDL A P+R+DGA LPW+L L TTAPS PN+ AQ DG ++ CRIT+D EV
Sbjct 59 SASQANVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRITIDDEV 118
Query 123 KDERTATGVDALTYCFVKSA 142
KDE GV ALT+C VKSA
Sbjct 119 KDENITHGVHALTFCLVKSA 138
>gi|118462696|ref|YP_881703.1| MmpS5 protein [Mycobacterium avium 104]
gi|118163983|gb|ABK64880.1| MmpS5 protein [Mycobacterium avium 104]
Length=144
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 104/140 (75%), Gaps = 4/140 (2%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSE--GILVTPKVFADDPEPFDPKVVEYEVSG 62
++ AW+PLLI+ VV + GF V R+++FFG+ GIL +P++ DD +PF PKVV+YEV G
Sbjct 7 VRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDTGILTSPRL--DDSKPFKPKVVKYEVFG 64
Query 63 SGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEV 122
S S N+NYLDL A P+R+DGA LPW+L L TTAPS PN+ AQ DG ++ CRIT+D EV
Sbjct 65 SASQANVNYLDLSADPKRVDGAPLPWTLVLSTTAPSVFPNLSAQSDGNTLGCRITIDDEV 124
Query 123 KDERTATGVDALTYCFVKSA 142
KDE GV ALT+C VKSA
Sbjct 125 KDENITHGVHALTFCLVKSA 144
>gi|296165068|ref|ZP_06847621.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899561|gb|EFG79014.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=144
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 103/140 (74%), Gaps = 4/140 (2%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSE--GILVTPKVFADDPEPFDPKVVEYEVSG 62
++ AW+PLLI+ V+ + GF V R+++FFG+ GIL +P++ DD +PF PKVV+YEV G
Sbjct 7 VRNAWLPLLIVAVLVVGGFAVARVKSFFGAHDTGILTSPRL--DDSKPFKPKVVKYEVFG 64
Query 63 SGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEV 122
S S N+NYLDL A P+RIDGA LPW+L L TTAPS PN+ AQ DG S+ CRIT+D EV
Sbjct 65 SASSANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRITIDDEV 124
Query 123 KDERTATGVDALTYCFVKSA 142
K E GV ALT+C VKSA
Sbjct 125 KAENMTHGVHALTFCMVKSA 144
>gi|254820611|ref|ZP_05225612.1| MmpS5 protein [Mycobacterium intracellulare ATCC 13950]
Length=138
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/140 (57%), Positives = 104/140 (75%), Gaps = 4/140 (2%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSE--GILVTPKVFADDPEPFDPKVVEYEVSG 62
++ AW+PLLI+ VV + GF V R+++FFG+ G++ +P++ D+ +PF PKVV+YEV G
Sbjct 1 MRNAWLPLLIVAVVLVGGFAVVRVKSFFGAHDTGVMTSPRL--DESKPFKPKVVKYEVFG 58
Query 63 SGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEV 122
S + N+NYLDL A P+RIDGA LPW+L L TTAPS PN+ AQ DG S+ CRIT+D EV
Sbjct 59 SAAQANVNYLDLSADPKRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRITIDDEV 118
Query 123 KDERTATGVDALTYCFVKSA 142
KDE GV ALT+C VKSA
Sbjct 119 KDENLTHGVHALTFCMVKSA 138
>gi|315442510|ref|YP_004075389.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
gi|315260813|gb|ADT97554.1| mycobacterium membrane protein [Mycobacterium sp. Spyr1]
Length=141
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/142 (60%), Positives = 104/142 (74%), Gaps = 1/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MI +KR W+P+L++ VA+ V +R+ FGS+ +VTP V AD E F+PKVV YEV
Sbjct 1 MISVVKRIWLPVLVIAAVAVGAGAVANLRSVFGSDKAIVTP-VDADTAENFNPKVVTYEV 59
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
GSG+ INY DLD KPQR LPWSLTL+TT PS PNI+AQGDG S+TCR+TVDG
Sbjct 60 FGSGTSATINYADLDGKPQRTGEVGLPWSLTLETTLPSVMPNIMAQGDGHSLTCRVTVDG 119
Query 121 EVKDERTATGVDALTYCFVKSA 142
EVKDERTA G++A TYC VK+A
Sbjct 120 EVKDERTAEGMNAATYCLVKAA 141
>gi|289760803|ref|ZP_06520181.1| LOW QUALITY PROTEIN: membrane protein mmpS5 [Mycobacterium tuberculosis
GM 1503]
gi|289708309|gb|EFD72325.1| LOW QUALITY PROTEIN: membrane protein mmpS5 [Mycobacterium tuberculosis
GM 1503]
Length=95
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/95 (89%), Positives = 85/95 (90%), Gaps = 0/95 (0%)
Query 48 PEPFDPKVVEYEVSGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQG 107
P P+ SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQG
Sbjct 1 PGAVRPQGGGVRSSGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQG 60
Query 108 DGTSITCRITVDGEVKDERTATGVDALTYCFVKSA 142
DGTSITCRITVDGEVKDERTATGVDALTYCFVKSA
Sbjct 61 DGTSITCRITVDGEVKDERTATGVDALTYCFVKSA 95
>gi|333989815|ref|YP_004522429.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
gi|333485783|gb|AEF35175.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
Length=141
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/138 (58%), Positives = 103/138 (75%), Gaps = 1/138 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGSG 64
+ R W+P++I+ V TV ++RT FGS +++T + +D+ E F+PK V YEV GSG
Sbjct 5 ISRVWLPVVIVAAVTAGAVTVAQLRTVFGSHPVVIT-DISSDNAEDFNPKFVTYEVFGSG 63
Query 65 SYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKD 124
+ INY+DL+ KPQRI AALPW+LTL+TT PS PNILAQ DG SI+CR+TVD EVK
Sbjct 64 TTAVINYMDLEGKPQRIPSAALPWTLTLQTTLPSVMPNILAQSDGDSISCRVTVDDEVKQ 123
Query 125 ERTATGVDALTYCFVKSA 142
ERTATGV+A T+CFVK+A
Sbjct 124 ERTATGVNAETFCFVKAA 141
>gi|118468420|ref|YP_885767.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
gi|118169707|gb|ABK70603.1| MmpS5 protein [Mycobacterium smegmatis str. MC2 155]
Length=138
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/138 (58%), Positives = 103/138 (75%), Gaps = 1/138 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGSG 64
L R W+P+LI+V VA V +RT FGS ++VT K +D+ E F+PKVV YE+ GSG
Sbjct 2 LGRIWLPVLIVVAVAAGALIVMNVRTVFGSNPVVVTEKT-SDNAEDFNPKVVTYEIFGSG 60
Query 65 SYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKD 124
S INY+DL+ PQR++ LPWSLTL+TT PS P+I+AQGDG SITCR+TVD VK+
Sbjct 61 SSAVINYMDLEGMPQRVESTPLPWSLTLQTTLPSVMPHIMAQGDGDSITCRVTVDDVVKE 120
Query 125 ERTATGVDALTYCFVKSA 142
ERTATG++A T+C+VK+A
Sbjct 121 ERTATGMNAETFCYVKAA 138
>gi|145223615|ref|YP_001134293.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
gi|145216101|gb|ABP45505.1| membrane family protein [Mycobacterium gilvum PYR-GCK]
Length=141
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/142 (57%), Positives = 104/142 (74%), Gaps = 1/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MI +KR W+P+LI+V +AI ++ +R+ FGS G +VTP V +D E F+P VV YEV
Sbjct 1 MITVVKRVWLPVLIVVALAIGFVSISYLRSVFGSNGAVVTP-VGSDTAEDFNPTVVTYEV 59
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
G+GS+ INY DLD PQR +LPW+LTL+TT PS P++LAQG+G I CR+TVDG
Sbjct 60 FGTGSFAVINYTDLDGLPQRTGQVSLPWTLTLETTIPSVRPDLLAQGNGQFIGCRVTVDG 119
Query 121 EVKDERTATGVDALTYCFVKSA 142
EV+DERTA GV+A TYC VK+A
Sbjct 120 EVEDERTAEGVNAATYCLVKAA 141
>gi|120402073|ref|YP_951902.1| hypothetical protein Mvan_1058 [Mycobacterium vanbaalenii PYR-1]
gi|119954891|gb|ABM11896.1| hypothetical protein Mvan_1058 [Mycobacterium vanbaalenii PYR-1]
Length=141
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/142 (61%), Positives = 105/142 (74%), Gaps = 1/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MI +KR W+P+L++ VA+ TV +R+ FGS+ +VTP V AD E F+PKVV YE+
Sbjct 1 MITVVKRVWLPVLVIAAVAVGAVTVANLRSVFGSDKAIVTP-VDADTAENFNPKVVTYEI 59
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
GSGS INY DLD KPQR +LPWSLTL+TT PS PNI+AQGDG SITCR+TVD
Sbjct 60 FGSGSTATINYADLDGKPQRTGEVSLPWSLTLETTLPSVMPNIMAQGDGQSITCRVTVDD 119
Query 121 EVKDERTATGVDALTYCFVKSA 142
EVKDERTA G++A TYC VK+A
Sbjct 120 EVKDERTAEGLNAATYCLVKAA 141
>gi|169631459|ref|YP_001705108.1| putative membrane protein MmpS [Mycobacterium abscessus ATCC
19977]
gi|169243426|emb|CAM64454.1| Putative membrane protein, MmpS [Mycobacterium abscessus]
Length=141
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/142 (56%), Positives = 96/142 (68%), Gaps = 1/142 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
MI KR W+P+L++ VAI TV +RT FG+ +VTP+ +D E F+PKVV YEV
Sbjct 1 MIRVAKRVWLPMLVVAAVAIGSITVMHLRTNFGATPFVVTPR-NSDTAERFNPKVVTYEV 59
Query 61 SGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
GS + INY DL+A PQR+ LPWSLTL TT PS P + AQGDG I CRITVD
Sbjct 60 FGSAATAVINYRDLNAIPQRVSEVPLPWSLTLSTTLPSVMPTLFAQGDGQDIGCRITVDN 119
Query 121 EVKDERTATGVDALTYCFVKSA 142
+VKDER TGV+A TYC VK+A
Sbjct 120 DVKDERVVTGVNAETYCLVKAA 141
>gi|342859706|ref|ZP_08716359.1| MmpS5 protein [Mycobacterium colombiense CECT 3035]
gi|342132838|gb|EGT86058.1| MmpS5 protein [Mycobacterium colombiense CECT 3035]
Length=138
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 104/140 (75%), Gaps = 4/140 (2%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSE--GILVTPKVFADDPEPFDPKVVEYEVSG 62
++ AW+PLLI+ VV + GF V R+++FFG++ GI+ +P++ DD +PF PKVV+YEV G
Sbjct 1 MRNAWLPLLIVAVVVVGGFAVVRVKSFFGAQDTGIMTSPRL--DDSKPFKPKVVKYEVFG 58
Query 63 SGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEV 122
S S N+NYLDL A P+RIDGA LPW+L L TTAPS PN+ AQ DG S+ CRIT+D EV
Sbjct 59 SASQANVNYLDLSADPRRIDGAPLPWTLVLSTTAPSVFPNLSAQSDGNSLGCRITIDDEV 118
Query 123 KDERTATGVDALTYCFVKSA 142
K E GV ALT+C VKSA
Sbjct 119 KAENITHGVHALTFCLVKSA 138
>gi|118618954|ref|YP_907286.1| membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99]
gi|118571064|gb|ABL05815.1| conserved membrane protein MmpS5_1 [Mycobacterium ulcerans Agy99]
Length=139
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/139 (54%), Positives = 99/139 (72%), Gaps = 2/139 (1%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSG-S 63
LKRAWIPLL++VV+AI+GF V R+ FGSE + D + F+PKVV YE+SG +
Sbjct 2 LKRAWIPLLMVVVLAISGFVVSRLHKIFGSEDLNANAGAGIDIVQ-FNPKVVIYEISGPA 60
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
GS NIN+ D DA +++ A LPWS T+ TT PS + NI+AQGDG+ I CRITVDG V+
Sbjct 61 GSTANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRITVDGVVR 120
Query 124 DERTATGVDALTYCFVKSA 142
+E++A GV+ T+C VKSA
Sbjct 121 EEKSAAGVNPQTFCLVKSA 139
>gi|183980798|ref|YP_001849089.1| hypothetical protein MMAR_0774 [Mycobacterium marinum M]
gi|183174124|gb|ACC39234.1| conserved membrane protein [Mycobacterium marinum M]
Length=148
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/143 (52%), Positives = 98/143 (69%), Gaps = 1/143 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
++ LKR WI L+IL VV IA F+V R+R++FG +DD +PF+PK V YEV
Sbjct 6 VLNALKRTWIALVILAVVVIAAFSVNRLRSYFGVHDDRPLTSGVSDDIKPFNPKHVVYEV 65
Query 61 SGS-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVD 119
G G+ NINYLD++A+PQR+ G LPW+L + TT PS + N++AQGD I CRI V+
Sbjct 66 FGPPGTVANINYLDIEAQPQRVSGVTLPWTLAVTTTLPSVSVNVVAQGDTDQIGCRIIVN 125
Query 120 GEVKDERTATGVDALTYCFVKSA 142
GEVKDER+ V+A T+C VKSA
Sbjct 126 GEVKDERSENEVNAQTFCLVKSA 148
>gi|183983258|ref|YP_001851549.1| transmembrane protein [Mycobacterium marinum M]
gi|183176584|gb|ACC41694.1| conserved transmembrane protein [Mycobacterium marinum M]
Length=129
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/129 (54%), Positives = 99/129 (77%), Gaps = 1/129 (0%)
Query 13 LILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGSGSYVNINYL 72
++LV+V+ V RIRT+FG+ ++VTP +F +DP+P +PK V YEVSGSG+Y +INYL
Sbjct 1 MVLVIVSSTAL-VARIRTYFGAVPVIVTPVIFGEDPDPHNPKRVTYEVSGSGTYADINYL 59
Query 73 DLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKDERTATGVD 132
D DA P+ ++ LPW++T+ TA S AP ++AQ DG++I CRI +DG+VKDERT+TGV+
Sbjct 60 DPDAIPRDLNNITLPWTMTVTATAASVAPILVAQSDGSTIRCRIVIDGKVKDERTSTGVN 119
Query 133 ALTYCFVKS 141
A T+C VK+
Sbjct 120 AQTFCLVKA 128
>gi|183983723|ref|YP_001852014.1| membrane protein MmpS5_1 [Mycobacterium marinum M]
gi|183177049|gb|ACC42159.1| conserved membrane protein MmpS5_1 [Mycobacterium marinum M]
Length=147
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/139 (54%), Positives = 98/139 (71%), Gaps = 2/139 (1%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSG-S 63
LKRAWIPLL++VV+AI+G V R+ FGSE + D + F+PKVV YE+SG +
Sbjct 10 LKRAWIPLLMVVVLAISGLVVSRLHKIFGSEDLNANAGAGIDIVQ-FNPKVVIYEISGPA 68
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
GS NIN+ D DA +++ A LPWS T+ TT PS + NI+AQGDG+ I CRITVDG V+
Sbjct 69 GSTANINFWDADANTHQVNAAPLPWSFTISTTLPSVSANIMAQGDGSQIGCRITVDGVVR 128
Query 124 DERTATGVDALTYCFVKSA 142
+E++A GV+ T+C VKSA
Sbjct 129 EEKSAAGVNPQTFCLVKSA 147
>gi|169630231|ref|YP_001703880.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
gi|169242198|emb|CAM63226.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=143
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/143 (48%), Positives = 93/143 (66%), Gaps = 1/143 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
M T+++ W+PLLI VVAI GF V R+R FGSE + A D P++PK + YE+
Sbjct 1 MFRTIRKIWMPLLIAAVVAIGGFAVFRVRGIFGSESFGASADNNAKDAVPYNPKTLVYEI 60
Query 61 SGS-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVD 119
G G+ ++NY + DA+P R+D LPW+ + +T PS + NI+AQG+G I CRITV+
Sbjct 61 FGEPGAMADVNYFNEDAQPTRVDNVQLPWAFKIVSTLPSLSGNIVAQGNGDQIGCRITVN 120
Query 120 GEVKDERTATGVDALTYCFVKSA 142
GEVK ER +T +A YC VKSA
Sbjct 121 GEVKMERVSTEHNAYIYCLVKSA 143
>gi|240169835|ref|ZP_04748494.1| hypothetical protein MkanA1_11007 [Mycobacterium kansasii ATCC
12478]
Length=148
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/139 (54%), Positives = 98/139 (71%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS- 63
LKR WIPL+I+ VVA+AGF+V R+R FFG ADD +PF+PK V YEV G
Sbjct 10 LKRVWIPLVIVAVVAVAGFSVYRLRGFFGYTDKGPITSGIADDIKPFNPKHVVYEVFGPP 69
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ NINYLD++A+PQR+ LPW+L++ TT PS + N++AQG+ I CRI V+GEVK
Sbjct 70 GTIANINYLDINAQPQRVSNVPLPWTLSVTTTLPSVSVNVVAQGNSDQIGCRIIVNGEVK 129
Query 124 DERTATGVDALTYCFVKSA 142
DER+ V+A T+C VKSA
Sbjct 130 DERSENQVNAQTFCLVKSA 148
>gi|333992781|ref|YP_004525395.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
gi|333488749|gb|AEF38141.1| transmembrane proteinm MmpS5 [Mycobacterium sp. JDM601]
Length=141
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 107/140 (77%), Gaps = 4/140 (2%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSE-GILVTPKVFADDPEPFDPKVVEYEVSGS 63
LKR W+PLLI+VV+ + TV R+RTFFG E L++ KV DD +P++PKVV YEV G
Sbjct 4 LKRGWLPLLIVVVLVLGTLTVLRLRTFFGGEDSSLISTKV--DDTKPYNPKVVTYEVFGE 61
Query 64 -GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEV 122
G+ +I+YLDLD++PQR+D A LPW++TL TT + +PN+ AQG G+++ CRI++D E+
Sbjct 62 PGATADISYLDLDSRPQRVDDAVLPWAVTLSTTLSAVSPNLYAQGKGSTLGCRISIDDEL 121
Query 123 KDERTATGVDALTYCFVKSA 142
KDERTATG A+T+C VK+A
Sbjct 122 KDERTATGASAMTFCLVKAA 141
>gi|333992658|ref|YP_004525272.1| hypothetical protein JDM601_4018 [Mycobacterium sp. JDM601]
gi|333488626|gb|AEF38018.1| membrane protein MmpS4_2 [Mycobacterium sp. JDM601]
Length=148
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/139 (49%), Positives = 93/139 (67%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS- 63
L R WIPL+IL VV +AGFTV RI FGSE D+ +PF+PK + YE+ G
Sbjct 10 LSRVWIPLVILAVVGVAGFTVTRIHGLFGSEKRPSYADGQIDETKPFNPKRMTYEIFGPP 69
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ +I+Y D++++PQR+ ALPW L + TT P+ +I+AQG+ SI CRITVDGEVK
Sbjct 70 GTVADISYFDVNSEPQRVQDVALPWQLEIVTTLPAVVGSIMAQGNSNSIGCRITVDGEVK 129
Query 124 DERTATGVDALTYCFVKSA 142
ER + V+A T+C +K+A
Sbjct 130 AERISNEVNAYTFCLLKAA 148
>gi|183980130|ref|YP_001848421.1| membrane protein MmpS5_3 [Mycobacterium marinum M]
gi|183173456|gb|ACC38566.1| conserved membrane protein MmpS5_3 [Mycobacterium marinum M]
Length=145
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/139 (47%), Positives = 95/139 (69%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSG-S 63
L + WIPL+I+ VV + F+V R+ FFGS+ + +DD PF+PK + YE+ G +
Sbjct 7 LGKLWIPLVIVTVVGVTAFSVSRVHGFFGSQKPELYTDGSSDDATPFNPKQLTYEIFGPA 66
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ +I+Y D++A+P+R+DGA LPWSL +K+T+ S NI+AQGD + CRI VDG +K
Sbjct 67 GTVADIDYFDVNAQPRRVDGAHLPWSLEIKSTSASLTGNIVAQGDSNRLGCRIIVDGVIK 126
Query 124 DERTATGVDALTYCFVKSA 142
ER + V+A T+C VKSA
Sbjct 127 AERISQEVNAYTFCIVKSA 145
>gi|240172076|ref|ZP_04750735.1| hypothetical protein MkanA1_22360 [Mycobacterium kansasii ATCC
12478]
Length=149
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/143 (47%), Positives = 94/143 (66%), Gaps = 1/143 (0%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV 60
++ LKR WIPL++ + VA +GFTV R+ FG+ G AD+ PF+PK V YEV
Sbjct 7 ILSALKRLWIPLVVSLTVATSGFTVYRLHGIFGAAGFSAISNGHADEIVPFNPKQVRYEV 66
Query 61 SGS-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVD 119
G G+ +I+YLD +A PQ+ LPW+ T TT P+ N++AQGD +I CRI+V+
Sbjct 67 VGPPGTTGSISYLDENAAPQQARFTMLPWTHTFTTTIPAVFANLVAQGDSNAIGCRISVN 126
Query 120 GEVKDERTATGVDALTYCFVKSA 142
GE+K+++ AT V+A T+C VKSA
Sbjct 127 GEIKEQQYATEVNAQTFCLVKSA 149
>gi|333991846|ref|YP_004524460.1| hypothetical protein JDM601_3206 [Mycobacterium sp. JDM601]
gi|333487814|gb|AEF37206.1| membrane protein MmpS4_2 [Mycobacterium sp. JDM601]
Length=119
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 90/120 (75%), Gaps = 3/120 (2%)
Query 25 VQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEV-SGSGSYVNINYLDLDAKPQRIDG 83
+ RIR +FG + + F +D +PF PKVV Y++ S G+Y +INYLDL+A PQR+DG
Sbjct 1 MHRIRGYFGGDDSGSSAAPF-EDTKPFHPKVVVYDIFSPDGTYADINYLDLEATPQRVDG 59
Query 84 AALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKDERTATG-VDALTYCFVKSA 142
A+LPWSLTL TT P+ +PNI+AQGDG++I CR+T+DGE+KDER ++ V A T+C VKS
Sbjct 60 ASLPWSLTLSTTNPAVSPNIVAQGDGSTIGCRVTIDGELKDERVSSSPVSAQTFCIVKSG 119
>gi|240169833|ref|ZP_04748492.1| membrane protein MmpS4_2 [Mycobacterium kansasii ATCC 12478]
Length=139
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 90/142 (64%), Gaps = 8/142 (5%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFAD---DPEPFDPKVVEYEVS 61
L R WI L+IL VV GFTV RIR FF SE ++D D +PF+PK + YEV
Sbjct 2 LSRTWIALVILAVVIAGGFTVHRIRGFFASE----KRASYSDSNLDSKPFNPKQITYEVF 57
Query 62 GS-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
G G+ +I+Y D+++ PQR+D A LPWSL T + N++AQGD SI CRITVDG
Sbjct 58 GPPGTVADISYFDVNSDPQRVDQAVLPWSLHFTTNLAAVMGNLVAQGDSDSIGCRITVDG 117
Query 121 EVKDERTATGVDALTYCFVKSA 142
VK E+ + V+A TYC VKSA
Sbjct 118 VVKAEKVSHEVNAYTYCLVKSA 139
>gi|240170826|ref|ZP_04749485.1| membrane protein MmpS5_1 [Mycobacterium kansasii ATCC 12478]
Length=139
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/138 (48%), Positives = 92/138 (67%), Gaps = 2/138 (1%)
Query 6 KRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS-G 64
+ WIPL++++V+A++G V R+ FGS+ + + + F+PKVV YEV G G
Sbjct 3 RHLWIPLVLVIVLAVSGLVVMRLHRIFGSQDLNANAGGGIEIVQ-FNPKVVTYEVFGPPG 61
Query 65 SYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKD 124
S NINY D DA +++ A LPWS+T+ TT PS + NI+AQGDG+ I CRITVDG V+
Sbjct 62 STANINYWDADANTHQVNAAPLPWSVTISTTLPSVSANIMAQGDGSRIGCRITVDGVVRQ 121
Query 125 ERTATGVDALTYCFVKSA 142
E+ + GV+ T+C VKSA
Sbjct 122 EKKSDGVNPQTFCLVKSA 139
>gi|15607592|ref|NP_214965.1| membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15839839|ref|NP_334876.1| hypothetical protein MT0467 [Mycobacterium tuberculosis CDC1551]
gi|31791629|ref|NP_854122.1| membrane protein [Mycobacterium bovis AF2122/97]
82 more sequence titles
Length=140
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/139 (52%), Positives = 96/139 (70%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS- 63
L R WIPL+ILVVV + GFTV RIR FFGSE ++ +PF+PK + YE+ G
Sbjct 2 LMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPP 61
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ +I+Y D++++PQR+DGA LPWSL + T + NI+AQG+ SI CRITVDG+V+
Sbjct 62 GTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVR 121
Query 124 DERTATGVDALTYCFVKSA 142
ER + V+A TYC VKSA
Sbjct 122 AERVSNEVNAYTYCLVKSA 140
>gi|118465434|ref|YP_883027.1| MmpS4 protein [Mycobacterium avium 104]
gi|118166721|gb|ABK67618.1| MmpS4 protein [Mycobacterium avium 104]
Length=148
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/139 (49%), Positives = 93/139 (67%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS- 63
+KR W+ L+++VVV +AGF V R+ FGS +D EPF PK + EV G+
Sbjct 10 VKRGWMVLVVVVVVGVAGFCVYRLHGIFGSHNNTSAAGGISDQTEPFSPKHITLEVFGNP 69
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ INY+D++ +P+++ AALPWSLT+ TT P A N++AQG+ S+ CRITVDG+VK
Sbjct 70 GAVATINYVDINVQPRQVLNAALPWSLTMVTTQPGAFSNLVAQGNSDSLGCRITVDGDVK 129
Query 124 DERTATGVDALTYCFVKSA 142
DER V+A T+C VKSA
Sbjct 130 DERIVNQVNAYTFCLVKSA 148
>gi|296164372|ref|ZP_06846949.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900275|gb|EFG79704.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=139
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/139 (51%), Positives = 96/139 (70%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS- 63
+K+ WI L+I+ VVA+AGF V R+RTFFG AD+ +PF+PK V Y+V G
Sbjct 1 MKKMWIVLVIVAVVAVAGFCVLRLRTFFGVHDDQTMTSGIADEIKPFNPKRVVYQVYGPP 60
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ NINYLD++A+PQ+ LPW+L++ +T PS + NI+AQGD I CRI VD VK
Sbjct 61 GTVANINYLDINAQPQKASNVPLPWTLSVTSTLPSVSVNIVAQGDSNQIGCRIIVDEVVK 120
Query 124 DERTATGVDALTYCFVKSA 142
DER++ G++A T+C VKSA
Sbjct 121 DERSSQGMNAQTFCIVKSA 139
>gi|118473924|ref|YP_884793.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
gi|82393549|gb|ABB72060.1| MmpS4 [Mycobacterium smegmatis str. MC2 155]
gi|118175211|gb|ABK76107.1| MmpS4 protein [Mycobacterium smegmatis str. MC2 155]
Length=139
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/139 (44%), Positives = 86/139 (62%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS- 63
++R WIPLL++ VVA+ GFTV R+ FG+E A D +PFDPK + YEV G
Sbjct 1 MRRLWIPLLVIAVVAVGGFTVSRLHNVFGAEKRPSYADTKAADSKPFDPKRLTYEVFGPP 60
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ +I+Y D D+ PQ ++ +LPWSL +A +I+AQGD +I CRI VD EVK
Sbjct 61 GTLADISYFDEDSNPQFVEKVSLPWSLHFDIGKTTAVGSIMAQGDSDTIGCRIIVDDEVK 120
Query 124 DERTATGVDALTYCFVKSA 142
E+ + +A T C +K+A
Sbjct 121 AEKVSNQTNAFTSCLLKAA 139
>gi|254820444|ref|ZP_05225445.1| hypothetical protein MintA_10976 [Mycobacterium intracellulare
ATCC 13950]
Length=134
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/132 (47%), Positives = 87/132 (66%), Gaps = 1/132 (0%)
Query 12 LLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS-GSYVNIN 70
++ ++VVA+AGF + R+ FGS A + PF+PK V EV G+ G+ IN
Sbjct 3 IVSVLVVALAGFGIYRLHGIFGSHDNTTANSGLAAEIVPFNPKQVVLEVFGAPGAVATIN 62
Query 71 YLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKDERTATG 130
YLD++A+PQ++ A LPWS T+ TT P+ N++AQG+G ++ CRITV+GEVKD+RT
Sbjct 63 YLDVNAQPQQVKDAPLPWSFTITTTEPAVIGNVVAQGNGDTLGCRITVNGEVKDQRTVHK 122
Query 131 VDALTYCFVKSA 142
VDA T+C KS
Sbjct 123 VDAYTFCLDKSG 134
>gi|254776285|ref|ZP_05217801.1| MmpS4 protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=134
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/123 (49%), Positives = 80/123 (66%), Gaps = 1/123 (0%)
Query 21 AGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS-GSYVNINYLDLDAKPQ 79
AGF V R+ FGS +D EPF PK + EV G+ G+ INY+D++ +P+
Sbjct 12 AGFCVYRLHGIFGSHNNTSAAGGISDQTEPFSPKHITLEVFGNPGAVATINYVDINVQPR 71
Query 80 RIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKDERTATGVDALTYCFV 139
++ AALPWSLT+ TT P A N++AQG+ S+ CRITVDG+VKDER V+A T+C V
Sbjct 72 QVLNAALPWSLTMVTTQPGAFSNLVAQGNSDSLGCRITVDGDVKDERIVNQVNAYTFCLV 131
Query 140 KSA 142
KSA
Sbjct 132 KSA 134
>gi|120404792|ref|YP_954621.1| hypothetical protein Mvan_3834 [Mycobacterium vanbaalenii PYR-1]
gi|119957610|gb|ABM14615.1| hypothetical protein Mvan_3834 [Mycobacterium vanbaalenii PYR-1]
Length=139
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/139 (47%), Positives = 89/139 (65%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS- 63
+ RAWIPL++++V+ + G V RIR FGS + ++D DPK+V YE+ G
Sbjct 1 MTRAWIPLVLVLVLVVGGLAVWRIRNIFGSHQLPTYAGSMSEDSNKSDPKIVRYEIFGDP 60
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ +INY+D + P +I GA LPWS+ ++T +P+ N++AQGD I CRI+ DG VK
Sbjct 61 GATADINYIDDEGDPNQIVGATLPWSIEVETNSPAMVGNVVAQGDSDFIGCRISADGVVK 120
Query 124 DERTATGVDALTYCFVKSA 142
DERTA V A YCF KSA
Sbjct 121 DERTAHNVSAYVYCFTKSA 139
>gi|31792741|ref|NP_855234.1| membrane protein [Mycobacterium bovis AF2122/97]
gi|121637477|ref|YP_977700.1| putative membrane protein mmpS6 [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989952|ref|YP_002644639.1| hypothetical protein JTY_1583 [Mycobacterium bovis BCG str. Tokyo
172]
17 more sequence titles
Length=148
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/141 (49%), Positives = 91/141 (65%), Gaps = 1/141 (0%)
Query 3 GTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSG 62
G +KR W+ L+ + VVA+AGF+V R+ FGS T A+D +PF+PK V EV G
Sbjct 8 GLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQVTLEVFG 67
Query 63 S-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGE 121
+ G+ INYLD+DA P+++ LPWS T+ TT P+ N++AQGD SI CRITV+G
Sbjct 68 APGTVATINYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGCRITVNGV 127
Query 122 VKDERTATGVDALTYCFVKSA 142
VKDER V A T+C KS+
Sbjct 128 VKDERIVNEVRAYTFCLDKSS 148
>gi|342859455|ref|ZP_08716109.1| membrane transporter [Mycobacterium colombiense CECT 3035]
gi|342133696|gb|EGT86899.1| membrane transporter [Mycobacterium colombiense CECT 3035]
Length=134
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/134 (46%), Positives = 88/134 (66%), Gaps = 1/134 (0%)
Query 10 IPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSG-SGSYVN 68
+PL+++ VA+ G V R+R FGS+ I A+ E K V YEV G SG+ +
Sbjct 1 MPLVVVAAVALGGIAVDRLRGVFGSDAIFTATGTSAEPLEASHVKSVTYEVYGPSGTTGS 60
Query 69 INYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKDERTA 128
+NYLD +A+P+++D ALPW+LT+ TT P+ +++AQG G I CRITV+GE+KDER++
Sbjct 61 VNYLDNNAEPKQVDFTALPWTLTITTTVPAVIASLVAQGTGDDIGCRITVNGELKDERSS 120
Query 129 TGVDALTYCFVKSA 142
G A T C VK+A
Sbjct 121 AGRHAQTSCLVKAA 134
>gi|339631627|ref|YP_004723269.1| hypothetical protein MAF_15830 [Mycobacterium africanum GM041182]
gi|339330983|emb|CCC26655.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=148
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/141 (48%), Positives = 91/141 (65%), Gaps = 1/141 (0%)
Query 3 GTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSG 62
G +KR W+ L+ + VVA+AGF+V R+ FGS T A+D +PF+PK V EV G
Sbjct 8 GLVKRGWMVLVAVAVVAVAGFSVYRLHGIFGSHDTTSTAGGVANDIKPFNPKQVTLEVFG 67
Query 63 S-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGE 121
+ G+ +NYLD+DA P+++ LPWS T+ TT P+ N++AQGD SI CRITV+G
Sbjct 68 APGTVATVNYLDVDATPRQVLDTTLPWSYTITTTLPAVFANVVAQGDSNSIGCRITVNGV 127
Query 122 VKDERTATGVDALTYCFVKSA 142
VKDER V A T+C KS+
Sbjct 128 VKDERIVNEVRAYTFCLDKSS 148
>gi|118464951|ref|YP_880981.1| Mmps1 protein [Mycobacterium avium 104]
gi|254774572|ref|ZP_05216088.1| Mmps1 protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|118166238|gb|ABK67135.1| Mmps1 protein [Mycobacterium avium 104]
Length=130
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/131 (46%), Positives = 88/131 (68%), Gaps = 2/131 (1%)
Query 13 LILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS-GSYVNINY 71
+++VV+A++ V R+ FGSE + + + F+PKVV YE+SG+ GS NINY
Sbjct 1 MLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQ-FNPKVVVYEISGAPGSTANINY 59
Query 72 LDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKDERTATGV 131
D +A +++ A LPWS T+ TT PS + NI+AQ DG++I+C+ITVDG V+D + + G
Sbjct 60 WDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRDNQNSDGH 119
Query 132 DALTYCFVKSA 142
+A T+C VKSA
Sbjct 120 NAQTFCLVKSA 130
>gi|183980796|ref|YP_001849087.1| membrane protein MmpS4_2 [Mycobacterium marinum M]
gi|183174122|gb|ACC39232.1| conserved membrane protein MmpS4_2 [Mycobacterium marinum M]
Length=139
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/142 (47%), Positives = 94/142 (67%), Gaps = 8/142 (5%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFAD---DPEPFDPKVVEYEVS 61
L R WI L+I+ V+ + GF+V RIR FF SE + ++D D +PF+PK + YEV
Sbjct 2 LSRTWIVLVIVAVIIVGGFSVHRIRGFFASE----KRESYSDSNLDNKPFNPKEITYEVF 57
Query 62 GS-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDG 120
G G+ +I+Y D+++ PQ+++GA LPW+L T + N++AQG+ SI CRITVDG
Sbjct 58 GPPGTVADISYFDVNSDPQQVEGAVLPWTLHFTTNLAAVMGNLVAQGNTNSIGCRITVDG 117
Query 121 EVKDERTATGVDALTYCFVKSA 142
+VK ER + V+A TYC VKSA
Sbjct 118 KVKAERVSNEVNAYTYCLVKSA 139
>gi|118617881|ref|YP_906213.1| membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
gi|118569991|gb|ABL04742.1| conserved membrane protein MmpS4 [Mycobacterium ulcerans Agy99]
Length=156
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/148 (43%), Positives = 91/148 (62%), Gaps = 10/148 (6%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDP-----EPFDPKV 55
++ LKRAW+PL++ VV A+ GF V R+R FGS+ + +AD PK
Sbjct 13 IVTVLKRAWLPLVLAVVFAVGGFAVSRVRGMFGSQQL----PTYADSTPAGSVSSSGPKR 68
Query 56 VEYEVSGS-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITC 114
V YE+ G+ G+ +INY+D + Q+++ ALPWS+ ++T APS NI+AQ + + C
Sbjct 69 VRYEIFGAPGTIADINYMDPAGEAQQLNDVALPWSIEVETDAPSMVANIIAQANTDFLGC 128
Query 115 RITVDGEVKDERTATGVDALTYCFVKSA 142
RI+ GEVKDERT++ V A YC KSA
Sbjct 129 RISSGGEVKDERTSSAVSAYVYCIAKSA 156
>gi|254818587|ref|ZP_05223588.1| membrane protein MmpS1 [Mycobacterium intracellulare ATCC 13950]
Length=142
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/139 (44%), Positives = 89/139 (65%), Gaps = 1/139 (0%)
Query 5 LKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSG-S 63
+KRAW+PL++++V+AIA F V R+ FG + + D F+PK V Y+V G +
Sbjct 4 VKRAWVPLVMVLVIAIASFAVVRLHGVFGRQSVSAGGANGVDTLVQFNPKHVLYDVWGPA 63
Query 64 GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVK 123
G+ V ++YLD A+PQR+ A +PWS + TT + ++AQG+ SI CRITV+GEV+
Sbjct 64 GTVVQVDYLDEHAQPQRVATATVPWSYEIVTTDTAVIATVVAQGEADSIGCRITVNGEVR 123
Query 124 DERTATGVDALTYCFVKSA 142
D+R G A T+C +KSA
Sbjct 124 DQRVFDGHRAQTHCIMKSA 142
>gi|296165037|ref|ZP_06847592.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899685|gb|EFG79136.1| MmpS family membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=142
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/147 (44%), Positives = 88/147 (60%), Gaps = 10/147 (6%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDP----EPFDPKVV 56
M+G LKRAW+PL + +V+ AG +V +R FGS K A D EP K V
Sbjct 1 MVGLLKRAWVPLAVALVLGFAGLSVSHLRGMFGSH-----QKSSAGDVAAVIEPVIHKQV 55
Query 57 EYEVSGS-GSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCR 115
YE+ GS + +INYLD A P+ ++ +LPWS T+ T P+ N++AQGDG I CR
Sbjct 56 TYEIYGSPTTLASINYLDAGAAPRDVEVRSLPWSYTITTRLPAVFANVVAQGDGDRIGCR 115
Query 116 ITVDGEVKDERTATGVDALTYCFVKSA 142
I V+GEV+D+++ G AL C VK+A
Sbjct 116 IIVNGEVRDQQSTNGKHALASCLVKAA 142
>gi|169631388|ref|YP_001705037.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
gi|169243355|emb|CAM64383.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=143
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/150 (46%), Positives = 89/150 (60%), Gaps = 17/150 (11%)
Query 1 MIGTLKRAWIPLLILVVVAIAGFTVQRIRTFFG------SEGILVTPKVFADDPEPFDPK 54
M LKR WIPLL++VVV I G+ + +IR EG +T F+PK
Sbjct 1 MYRLLKRFWIPLLLVVVVGIGGYAIAQIRGSAAPRPAKLGEGSGITAN--------FNPK 52
Query 55 VVEYEVSGSGSYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDG--TSI 112
+ YEV GSG N+NYLD + +P I+ A LPWS T+ TT PS + NI+AQGD T +
Sbjct 53 HITYEVVGSGGTANLNYLDENGQPHLIENAPLPWSFTIVTTLPSMSANIVAQGDRSVTDL 112
Query 113 TCRITVDGEVKDER-TATGVDALTYCFVKS 141
CR+TVDG+V+D+R +A V YC VKS
Sbjct 113 GCRVTVDGQVRDDRSSADKVKPFIYCLVKS 142
>gi|41408336|ref|NP_961172.1| hypothetical protein MAP2238 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396692|gb|AAS04555.1| hypothetical protein MAP_2238 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=164
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/138 (48%), Positives = 95/138 (69%), Gaps = 2/138 (1%)
Query 6 KRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS-G 64
K+AWIPL+++VV+A++ V R+ FGSE + + + F+PKVV YE+SG+ G
Sbjct 28 KQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQ-FNPKVVVYEISGAPG 86
Query 65 SYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKD 124
S NINY D +A +++ A LPWS T+ TT PS + NI+AQ DG++I+C+ITVDG V+D
Sbjct 87 STANINYWDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRD 146
Query 125 ERTATGVDALTYCFVKSA 142
+ + G +A T+C VKSA
Sbjct 147 NQNSDGHNAQTFCLVKSA 164
>gi|336458226|gb|EGO37207.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=155
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/138 (48%), Positives = 95/138 (69%), Gaps = 2/138 (1%)
Query 6 KRAWIPLLILVVVAIAGFTVQRIRTFFGSEGILVTPKVFADDPEPFDPKVVEYEVSGS-G 64
K+AWIPL+++VV+A++ V R+ FGSE + + + F+PKVV YE+SG+ G
Sbjct 19 KQAWIPLVLVVVLAVSALIVSRLHKIFGSEDLNANAGKGIEIVQ-FNPKVVVYEISGAPG 77
Query 65 SYVNINYLDLDAKPQRIDGAALPWSLTLKTTAPSAAPNILAQGDGTSITCRITVDGEVKD 124
S NINY D +A +++ A LPWS T+ TT PS + NI+AQ DG++I+C+ITVDG V+D
Sbjct 78 STANINYWDENANTHQVNNAPLPWSTTISTTLPSVSANIMAQSDGSTISCKITVDGVVRD 137
Query 125 ERTATGVDALTYCFVKSA 142
+ + G +A T+C VKSA
Sbjct 138 NQNSDGHNAQTFCLVKSA 155
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129798780480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40