BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0678
Length=165
Score E
Sequences producing significant alignments: (Bits) Value
gi|308370475|ref|ZP_07421650.2| hypothetical protein TMCG_03489 ... 328 1e-88
gi|15607818|ref|NP_215192.1| hypothetical protein Rv0678 [Mycoba... 326 6e-88
gi|313657483|ref|ZP_07814363.1| hypothetical protein MtubKV_0363... 325 2e-87
gi|167967579|ref|ZP_02549856.1| hypothetical protein MtubH3_0590... 323 4e-87
gi|118616543|ref|YP_904875.1| transcriptional regulator [Mycobac... 276 9e-73
gi|183981028|ref|YP_001849319.1| transcriptional regulator [Myco... 273 5e-72
gi|289760804|ref|ZP_06520182.1| LOW QUALITY PROTEIN: conserved h... 142 1e-32
gi|291302142|ref|YP_003513420.1| regulatory protein, MarR [Stack... 114 7e-24
gi|328950633|ref|YP_004367968.1| regulatory protein MarR [Marini... 112 2e-23
gi|291301136|ref|YP_003512414.1| hypothetical protein Snas_3663 ... 109 2e-22
gi|291297269|ref|YP_003508667.1| MarR regulatory protein [Meioth... 107 6e-22
gi|159901092|ref|YP_001547339.1| regulatory protein MarR [Herpet... 105 2e-21
gi|149922505|ref|ZP_01910936.1| hypothetical protein PPSIR1_3126... 96.3 1e-18
gi|297623408|ref|YP_003704842.1| MarR family transcriptional reg... 93.2 1e-17
gi|108802943|ref|YP_642880.1| regulatory protein, MarR [Rubrobac... 90.9 6e-17
gi|336457666|gb|EGO36668.1| putative transcriptional regulator [... 90.9 6e-17
gi|297563386|ref|YP_003682360.1| regulatory protein, MarR [Nocar... 90.1 9e-17
gi|342861374|ref|ZP_08718022.1| MarR family transcriptional regu... 89.7 1e-16
gi|134098737|ref|YP_001104398.1| regulatory protein, MarR [Sacch... 89.4 2e-16
gi|118466247|ref|YP_882178.1| MarR family transcriptional regula... 89.4 2e-16
gi|224925925|gb|ACN69980.1| MarR regulatory protein [Streptomyce... 86.7 1e-15
gi|320450109|ref|YP_004202205.1| regulatory protein MarR [Thermu... 85.9 2e-15
gi|254818807|ref|ZP_05223808.1| transcriptional regulator, MarR ... 85.5 3e-15
gi|114706399|ref|ZP_01439301.1| hypothetical protein FP2506_0140... 82.4 2e-14
gi|325002131|ref|ZP_08123243.1| regulatory protein, MarR [Pseudo... 82.0 2e-14
gi|55980922|ref|YP_144219.1| hypothetical protein TTHA0953 [Ther... 81.3 4e-14
gi|46198895|ref|YP_004562.1| hypothetical protein TTC0587 [Therm... 80.9 5e-14
gi|150400299|ref|YP_001324066.1| regulatory protein MarR [Methan... 78.2 3e-13
gi|159035849|ref|YP_001535102.1| hypothetical protein Sare_0176 ... 78.2 4e-13
gi|256379176|ref|YP_003102836.1| ArsR family transcriptional reg... 77.8 5e-13
gi|291297702|ref|YP_003508980.1| hypothetical protein Snas_0167 ... 76.6 1e-12
gi|145592733|ref|YP_001157030.1| hypothetical protein Strop_0167... 76.3 2e-12
gi|226312351|ref|YP_002772245.1| hypothetical protein BBR47_2764... 75.9 2e-12
gi|229822134|ref|YP_002883660.1| regulatory protein, MarR [Beute... 75.1 3e-12
gi|169628945|ref|YP_001702594.1| hypothetical protein MAB_1857c ... 73.6 9e-12
gi|120401792|ref|YP_951621.1| transcriptional regulator, TrmB [M... 72.4 2e-11
gi|332361826|gb|EGJ39629.1| hypothetical protein HMPREF9389_1487... 69.3 2e-10
gi|134046004|ref|YP_001097490.1| hypothetical protein MmarC5_096... 69.3 2e-10
gi|342900706|ref|ZP_08722528.1| MarR family transcriptional regu... 68.2 4e-10
gi|302531677|ref|ZP_07284019.1| conserved hypothetical protein [... 68.2 4e-10
gi|297154799|gb|ADI04511.1| hypothetical protein SBI_01390 [Stre... 67.8 5e-10
gi|324990884|gb|EGC22819.1| hypothetical protein HMPREF9388_0916... 67.8 5e-10
gi|300782234|ref|YP_003762525.1| MarR family transcriptional reg... 66.6 1e-09
gi|254283658|ref|ZP_04958626.1| regulatory protein, MarR [gamma ... 65.5 2e-09
gi|163796447|ref|ZP_02190407.1| hypothetical protein BAL199_1080... 65.1 4e-09
gi|108799168|ref|YP_639365.1| transcriptional regulator TrmB [My... 65.1 4e-09
gi|269795007|ref|YP_003314462.1| transcriptional regulator [Sang... 64.7 5e-09
gi|297561868|ref|YP_003680842.1| regulatory protein, MarR [Nocar... 62.0 3e-08
gi|312141282|ref|YP_004008618.1| marr family transcriptional reg... 62.0 3e-08
gi|325673885|ref|ZP_08153575.1| hypothetical protein HMPREF0724_... 61.6 3e-08
>gi|308370475|ref|ZP_07421650.2| hypothetical protein TMCG_03489 [Mycobacterium tuberculosis SUMu003]
gi|308374073|ref|ZP_07434734.2| hypothetical protein TMFG_03348 [Mycobacterium tuberculosis SUMu006]
gi|308331824|gb|EFP20675.1| hypothetical protein TMCG_03489 [Mycobacterium tuberculosis SUMu003]
gi|308343093|gb|EFP31944.1| hypothetical protein TMFG_03348 [Mycobacterium tuberculosis SUMu006]
gi|323720902|gb|EGB29968.1| hypothetical protein TMMG_03385 [Mycobacterium tuberculosis CDC1551A]
gi|339293709|gb|AEJ45820.1| hypothetical protein CCDC5079_0630 [Mycobacterium tuberculosis
CCDC5079]
gi|339297348|gb|AEJ49458.1| hypothetical protein CCDC5180_0621 [Mycobacterium tuberculosis
CCDC5180]
Length=168
Score = 328 bits (842), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/165 (100%), Positives = 165/165 (100%), Gaps = 0/165 (0%)
Query 1 VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL
Sbjct 4 VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 63
Query 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV
Sbjct 64 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 123
Query 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD
Sbjct 124 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 168
>gi|15607818|ref|NP_215192.1| hypothetical protein Rv0678 [Mycobacterium tuberculosis H37Rv]
gi|15840081|ref|NP_335118.1| hypothetical protein MT0706.1 [Mycobacterium tuberculosis CDC1551]
gi|31791862|ref|NP_854355.1| hypothetical protein Mb0697 [Mycobacterium bovis AF2122/97]
69 more sequence titles
Length=165
Score = 326 bits (836), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 164/165 (99%), Positives = 165/165 (100%), Gaps = 0/165 (0%)
Query 1 VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
+SVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL
Sbjct 1 MSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
Query 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV
Sbjct 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
Query 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD
Sbjct 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
>gi|313657483|ref|ZP_07814363.1| hypothetical protein MtubKV_03635 [Mycobacterium tuberculosis
KZN V2475]
Length=165
Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/165 (99%), Positives = 165/165 (100%), Gaps = 0/165 (0%)
Query 1 VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
+SVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL
Sbjct 1 MSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
Query 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV
Sbjct 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
Query 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
GLRALGDAPPQRSRRLRE+RDLLAYMENVVSDALGRYSQRTGEDD
Sbjct 121 GLRALGDAPPQRSRRLREIRDLLAYMENVVSDALGRYSQRTGEDD 165
>gi|167967579|ref|ZP_02549856.1| hypothetical protein MtubH3_05907 [Mycobacterium tuberculosis
H37Ra]
Length=165
Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 163/165 (99%), Positives = 164/165 (99%), Gaps = 0/165 (0%)
Query 1 VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
+SVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL
Sbjct 1 MSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
Query 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
AASSGGISTNARMLIQFGFIERLAVAGD RTYFRLRPNAFAAGERERIRAMAELQDLADV
Sbjct 61 AASSGGISTNARMLIQFGFIERLAVAGDWRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
Query 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD
Sbjct 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
>gi|118616543|ref|YP_904875.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
gi|118568653|gb|ABL03404.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
Length=166
Score = 276 bits (705), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/165 (84%), Positives = 149/165 (91%), Gaps = 0/165 (0%)
Query 1 VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
+SVN+GVD+ G E DIMEFVEQMGGYFES LTRLAGRLLGWLLVCDPERQSSEELATAL
Sbjct 1 MSVNEGVDRAGTEADIMEFVEQMGGYFESSGLTRLAGRLLGWLLVCDPERQSSEELATAL 60
Query 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
AASSGGIST ARMLIQFGFIERLAVAGDRRT++RLRPNAFAAGERER+R MA+LQ+LAD
Sbjct 61 AASSGGISTTARMLIQFGFIERLAVAGDRRTFYRLRPNAFAAGERERLRTMADLQNLADT 120
Query 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
GL+ALGDAPP+RSRRL EMRDLLAYME V++ ALGRY Q E D
Sbjct 121 GLKALGDAPPERSRRLHEMRDLLAYMEKVLAGALGRYGQCGEEGD 165
>gi|183981028|ref|YP_001849319.1| transcriptional regulator [Mycobacterium marinum M]
gi|183174354|gb|ACC39464.1| transcriptional regulator [Mycobacterium marinum M]
Length=166
Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/165 (83%), Positives = 148/165 (90%), Gaps = 0/165 (0%)
Query 1 VSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATAL 60
+SVN+GVD+ G E DIMEFVEQMGGYFES LTRLAGRLLGWLLVCDPERQSSEELATAL
Sbjct 1 MSVNEGVDRAGTEADIMEFVEQMGGYFESSGLTRLAGRLLGWLLVCDPERQSSEELATAL 60
Query 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
AASSGGIST ARMLIQFGFIERLAVAGDRRT++RLRPNAFAAGERER+R MA+LQ+LAD
Sbjct 61 AASSGGISTTARMLIQFGFIERLAVAGDRRTFYRLRPNAFAAGERERLRTMADLQNLADT 120
Query 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD 165
GL+ALG APP+RSRRL EMRDLLAYME V++ ALGRY Q E D
Sbjct 121 GLKALGGAPPERSRRLHEMRDLLAYMEKVLAGALGRYGQCGEEGD 165
>gi|289760804|ref|ZP_06520182.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis GM 1503]
gi|289708310|gb|EFD72326.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis GM 1503]
Length=91
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%)
Query 94 RLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDA 153
RLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDA
Sbjct 20 RLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDA 79
Query 154 LGRYSQRTGEDD 165
LGRYSQRTGEDD
Sbjct 80 LGRYSQRTGEDD 91
>gi|291302142|ref|YP_003513420.1| regulatory protein, MarR [Stackebrandtia nassauensis DSM 44728]
gi|290571362|gb|ADD44327.1| regulatory protein, MarR [Stackebrandtia nassauensis DSM 44728]
Length=157
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 84/145 (58%), Gaps = 0/145 (0%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
F E++G Y ES+ L R+ GR+LGWLLVC+PE QS+EELA AL S G IS + L + G
Sbjct 13 FAEELGLYMESKGLPRIPGRVLGWLLVCEPEHQSAEELAEALTTSRGSISMATQYLQRAG 72
Query 79 FIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLRE 138
+ER V G RR Y+R+RP + E+ + E LA+ GL + D+ RLR+
Sbjct 73 VVERYPVPGSRRIYYRIRPGFWLNEASEKAKVAEEAVKLAERGLSTMADSSEDSRARLRD 132
Query 139 MRDLLAYMENVVSDALGRYSQRTGE 163
MRD+ +++ + ++ Q E
Sbjct 133 MRDMYSFLATEYARIENKWRQMQKE 157
>gi|328950633|ref|YP_004367968.1| regulatory protein MarR [Marinithermus hydrothermalis DSM 14884]
gi|328450957|gb|AEB11858.1| regulatory protein MarR [Marinithermus hydrothermalis DSM 14884]
Length=160
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/150 (40%), Positives = 88/150 (59%), Gaps = 0/150 (0%)
Query 16 IMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLI 75
+ EFVE +G +FE L R+AGR+ G+LL+ P QS E +A AL+ S ISTN R+LI
Sbjct 10 VQEFVEAVGAFFEEGGLPRMAGRIFGYLLISVPPEQSLEAIAQALSTSKASISTNTRLLI 69
Query 76 QFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRR 135
Q G +ERL GDR+ Y+R+RP +F + ++ + + L++ GL L D PP+ R
Sbjct 70 QIGMLERLKRPGDRKVYYRIRPGSFYTAVKAQLERITRFRLLSEEGLELLADQPPELRAR 129
Query 136 LREMRDLLAYMENVVSDALGRYSQRTGEDD 165
L E+R++ A+ E + L R+ E
Sbjct 130 LMELREMYAFFERELPAVLARWEATHKEKQ 159
>gi|291301136|ref|YP_003512414.1| hypothetical protein Snas_3663 [Stackebrandtia nassauensis DSM
44728]
gi|290570356|gb|ADD43321.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM
44728]
Length=152
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/141 (39%), Positives = 84/141 (60%), Gaps = 1/141 (0%)
Query 16 IMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLI 75
+ME+VE++ + ++ +A R LGWL+VCDP QS++++ A+ AS G ++TN R+L
Sbjct 10 LMEWVERLTAFLARDGVSPIAARCLGWLMVCDPPEQSAQQIGDAINASRGSMTTNLRLLT 69
Query 76 QFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRR 135
GF+ GDR TY+R+ NA+ R +I ++ QDLA GL LG QR+ R
Sbjct 70 AMGFVTHRTRPGDRTTYYRVDDNAWDTVVRRQIASLTAFQDLAQNGLDILGPG-TQRAAR 128
Query 136 LREMRDLLAYMENVVSDALGR 156
++E D A+M V ++A R
Sbjct 129 IKEAHDTFAWMSEVFNNAPPR 149
>gi|291297269|ref|YP_003508667.1| MarR regulatory protein [Meiothermus ruber DSM 1279]
gi|290472228|gb|ADD29647.1| regulatory protein, MarR [Meiothermus ruber DSM 1279]
Length=160
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/145 (36%), Positives = 83/145 (58%), Gaps = 0/145 (0%)
Query 16 IMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLI 75
+ +FVE+ +E+ L R+AGR+LGWL+VCDP Q++ +L L S IST R+L
Sbjct 5 LHDFVEEFALAYEAAGLPRIAGRILGWLMVCDPPEQTAAQLVATLGVSKASISTMTRLLT 64
Query 76 QFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRR 135
Q IE++ G R ++R+RP + + + ++ + LA+ GL+ + +APP+RS R
Sbjct 65 QMHLIEKVPKRGARSDFYRVRPGIWTERVKNGLASLVTYKKLAEKGLQLMENAPPERSER 124
Query 136 LREMRDLLAYMENVVSDALGRYSQR 160
L EM + ++ E + R QR
Sbjct 125 LLEMYQIYSFFEEELKGMFERLEQR 149
>gi|159901092|ref|YP_001547339.1| regulatory protein MarR [Herpetosiphon aurantiacus DSM 785]
gi|159894131|gb|ABX07211.1| regulatory protein, MarR [Herpetosiphon aurantiacus DSM 785]
Length=157
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/132 (43%), Positives = 78/132 (60%), Gaps = 6/132 (4%)
Query 16 IMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLI 75
I F E+ GG + R+AGR++GWLL+CDP +Q++ EL L+AS G IST R L+
Sbjct 16 IAVFYEKAGG------IPRMAGRIMGWLLICDPPQQNAAELGQVLSASKGSISTMTRWLL 69
Query 76 QFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRR 135
Q G I + AV GDRR YF +R +A ++ + + ++LA GL L D + R
Sbjct 70 QIGLINKTAVPGDRRDYFEIRKGTWADLLAQQFQTVGAFRELATQGLDLLTDPEGEEGAR 129
Query 136 LREMRDLLAYME 147
LREMRDL + E
Sbjct 130 LREMRDLYTFFE 141
>gi|149922505|ref|ZP_01910936.1| hypothetical protein PPSIR1_31268 [Plesiocystis pacifica SIR-1]
gi|149816613|gb|EDM76107.1| hypothetical protein PPSIR1_31268 [Plesiocystis pacifica SIR-1]
Length=168
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/144 (35%), Positives = 86/144 (60%), Gaps = 0/144 (0%)
Query 15 DIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARML 74
++ ++E + ++E + L R+AGR++ LLVCDP ++S+ ++AT L S G +S+ R+L
Sbjct 4 ELSAYIEDVALFWEKQGLPRIAGRIVALLLVCDPPQRSATQIATELGVSKGSVSSMTRLL 63
Query 75 IQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSR 134
+ G IE +A+ GDR TYFRL ++ R+ +M + LA+ GL + D PP++
Sbjct 64 LASGTIEAVALPGDRATYFRLTADSLERKFSRRLESMIGFRRLAERGLALMEDTPPEQRA 123
Query 135 RLREMRDLLAYMENVVSDALGRYS 158
RLR + L ++E + L ++
Sbjct 124 RLRRVAALYTFLERELPLLLDKWH 147
>gi|297623408|ref|YP_003704842.1| MarR family transcriptional regulator [Truepera radiovictrix
DSM 17093]
gi|297164588|gb|ADI14299.1| transcriptional regulator, MarR family [Truepera radiovictrix
DSM 17093]
Length=157
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/150 (40%), Positives = 81/150 (54%), Gaps = 0/150 (0%)
Query 15 DIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARML 74
D F+E+MG L R+AGR+ G LL+ DP S+EELA AL AS G IS RML
Sbjct 8 DKAAFIEEMGLLMAGLGLPRMAGRVFGALLLADPPEMSAEELAGALRASRGSISAATRML 67
Query 75 IQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSR 134
+ G I+R+ G+RR +R RPNA+ + R+ + + +A+ GL L P+ R
Sbjct 68 ERAGIIDRVRRPGERRDRYRNRPNAWNETLKTRLAIIGTFKAMAERGLALLETDDPEVRR 127
Query 135 RLREMRDLLAYMENVVSDALGRYSQRTGED 164
L EMRD A+ E + L R+ ED
Sbjct 128 GLVEMRDYFAHWERELPALLQRWDASARED 157
>gi|108802943|ref|YP_642880.1| regulatory protein, MarR [Rubrobacter xylanophilus DSM 9941]
gi|108764186|gb|ABG03068.1| regulatory protein, MarR [Rubrobacter xylanophilus DSM 9941]
Length=158
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/142 (38%), Positives = 77/142 (55%), Gaps = 0/142 (0%)
Query 13 EPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNAR 72
E + + ++E+ G +FE +R+ GR+L LLV +P ++ ELA L AS G IST R
Sbjct 2 EEEKLAYIEEFGLFFERVGGSRMVGRVLAALLVSEPPELTAGELAEILRASRGSISTATR 61
Query 73 MLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQR 132
L Q G + R A G+RR YFR+RP+A+ R + ++ LA+ G+ L P
Sbjct 62 TLEQMGMVRRFARPGERRDYFRVRPHAWEETVRRQSAMLSRFVALAERGIELLDPKTPDA 121
Query 133 SRRLREMRDLLAYMENVVSDAL 154
R L EMRD A+ E V +
Sbjct 122 RRSLEEMRDFYAFWEGEVGRVM 143
>gi|336457666|gb|EGO36668.1| putative transcriptional regulator [Mycobacterium avium subsp.
paratuberculosis S397]
Length=175
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/143 (38%), Positives = 79/143 (56%), Gaps = 1/143 (0%)
Query 14 PDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARM 73
PD EFV+++G +FE TR GR+ GWLL+C+P +QS +LA AL+ S IST AR
Sbjct 3 PDEAEFVDRLGLFFELLGATRTMGRVYGWLLICEPPQQSLTQLADALSVSKASISTVARQ 62
Query 74 LIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRS 133
L+ G +ERL + +R+ +R+ P F + ++ M + A+ L LGD Q+
Sbjct 63 LLDGGMVERLP-SPNRQHLYRVTPGGFTSVLETQLSLMRLGIEPAEFALSVLGDDRAQQR 121
Query 134 RRLREMRDLLAYMENVVSDALGR 156
RR+ + RD + D L R
Sbjct 122 RRVEDFRDFCEFCTRDYRDQLMR 144
>gi|297563386|ref|YP_003682360.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296847834|gb|ADH69854.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length=164
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/149 (33%), Positives = 82/149 (56%), Gaps = 1/149 (0%)
Query 17 MEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQ 76
+ FV+++ +FE L +AGR++GWLL+CDP QS+ +LA L S IS+ R+L
Sbjct 13 LAFVDEVAVFFEHEGLPLIAGRVVGWLLICDPPEQSAAQLAQTLQVSRSSISSATRLLTP 72
Query 77 FGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRL 136
G +E + G R+ YFR+ N ++ R A +++ + GL L +AP +R RL
Sbjct 73 SGLVEGVRRRGQRQEYFRIAANGWSRMLERRYAQTAAFREVTERGLSMLREAPDERRERL 132
Query 137 REMRDLLAYMENVVSDALGRY-SQRTGED 164
+ +L ++E+ + R+ S+R D
Sbjct 133 ANVHELYGFLESELPPLFSRWRSERERSD 161
>gi|342861374|ref|ZP_08718022.1| MarR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342131274|gb|EGT84555.1| MarR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=155
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/141 (36%), Positives = 78/141 (56%), Gaps = 1/141 (0%)
Query 14 PDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARM 73
P+ EFV+++G +FE TR GR+ GWLL+C+P +QS ELA L+ S IST AR
Sbjct 3 PEEAEFVDRLGLFFELLGATRTMGRVYGWLLICEPPQQSLTELAEVLSVSKASISTVARQ 62
Query 74 LIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRS 133
L+ G +ERL + +R+ +R+RP F + ++ M + A+ L LG+ ++
Sbjct 63 LLDGGMVERLP-SSNRQHLYRVRPGGFTSVLETQLSLMRLGIEPAEFALSVLGEDRAEQR 121
Query 134 RRLREMRDLLAYMENVVSDAL 154
RR+ + RD + D L
Sbjct 122 RRVEDFRDFCEFCTQAYGDQL 142
>gi|134098737|ref|YP_001104398.1| regulatory protein, MarR [Saccharopolyspora erythraea NRRL 2338]
gi|291003578|ref|ZP_06561551.1| regulatory protein, MarR [Saccharopolyspora erythraea NRRL 2338]
gi|133911360|emb|CAM01473.1| regulatory protein, MarR [Saccharopolyspora erythraea NRRL 2338]
Length=164
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/145 (32%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query 14 PDIMEFVEQMGGYFE-SRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNAR 72
P + E++EQM +FE + ++ +AGR+L +LL+CDP +++ EL+ AL+AS+G +STN R
Sbjct 11 PAMPEWIEQMAAHFEATEAMPLIAGRILAFLLICDPPERTAAELSHALSASTGSVSTNVR 70
Query 73 MLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQR 132
+L++ G I + G +R+ + + R R++ + EL+ L + GLR + +R
Sbjct 71 LLLRLGIISKTTRQGREAALYRVEEDRWPQLVRHRMQRVTELEQLTESGLR-MFSGQGER 129
Query 133 SRRLREMRDLLAYMENVVSDALGRY 157
+RRLR + + ++ + + R+
Sbjct 130 ARRLRTVHEFYRWLSAEMPELWRRW 154
>gi|118466247|ref|YP_882178.1| MarR family transcriptional regulator [Mycobacterium avium 104]
gi|118167534|gb|ABK68431.1| transcriptional regulator, MarR family protein [Mycobacterium
avium 104]
Length=175
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/143 (37%), Positives = 79/143 (56%), Gaps = 1/143 (0%)
Query 14 PDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARM 73
PD EFV+++G +FE TR GR+ GWLL+C+P +QS +LA AL+ S IST AR
Sbjct 3 PDEAEFVDRLGLFFELLGATRTMGRVYGWLLICEPPQQSLTQLADALSVSKASISTVARQ 62
Query 74 LIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRS 133
L+ G +ERL + +R+ +R+ P F + ++ M + A+ L LGD ++
Sbjct 63 LLDGGMVERLP-SPNRQHLYRVTPGGFTSVLETQLSLMRLGIEPAEFALSVLGDDRAEQR 121
Query 134 RRLREMRDLLAYMENVVSDALGR 156
RR+ + RD + D L R
Sbjct 122 RRVEDFRDFCEFCTRDYRDQLMR 144
>gi|224925925|gb|ACN69980.1| MarR regulatory protein [Streptomyces antibioticus]
Length=198
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/157 (32%), Positives = 85/157 (55%), Gaps = 5/157 (3%)
Query 5 DGVDQMGAEPD---IMEFVEQMGGYFESRS-LTRLAGRLLGWLLVCDPERQSSEELATAL 60
D DQ + D + ++VEQ+G +F +S + GR L WL+V DP Q+ ++A A+
Sbjct 7 DQADQADQDTDAARVRKWVEQVGTWFMQQSGWPPIMGRTLAWLMVSDPPEQNPAQIAAAV 66
Query 61 AASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
AS +++ R+L + I+ + +GDR TY+R+ P+A++A R R+ ++A D+ D
Sbjct 67 QASRASLTSTLRLLTEARMIQAVTRSGDRSTYYRVAPDAWSAMLRRRLESIASFSDITDE 126
Query 121 GLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRY 157
GL L R+ RLRE + ++ L R+
Sbjct 127 GL-GLFPQGAHRAERLREAHRVFEWLNVEAEPLLKRW 162
>gi|320450109|ref|YP_004202205.1| regulatory protein MarR [Thermus scotoductus SA-01]
gi|320150278|gb|ADW21656.1| regulatory protein MarR [Thermus scotoductus SA-01]
Length=147
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/141 (36%), Positives = 84/141 (60%), Gaps = 3/141 (2%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
+VE+ FES L R+AGR+L +LLV +P +S+ E++ AL+AS G +S +L++
Sbjct 8 WVEETALLFESAGLPRMAGRVLAYLLVAEPPEKSAREISEALSASKGALSPALNLLVRLH 67
Query 79 FIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLRE 138
ERL G+R + + P A+ E+ RA+A ++ A+ GL +G+ +R RLRE
Sbjct 68 LAERLRRPGERADRYAVHPGAWKRLLMEKARALALYREQAEKGLALVGE---ERGVRLRE 124
Query 139 MRDLLAYMENVVSDALGRYSQ 159
MRD+ A+ E + L ++++
Sbjct 125 MRDVYAFFERELPKLLEKFAE 145
>gi|254818807|ref|ZP_05223808.1| transcriptional regulator, MarR family protein [Mycobacterium
intracellulare ATCC 13950]
Length=156
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/141 (35%), Positives = 77/141 (55%), Gaps = 1/141 (0%)
Query 14 PDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARM 73
PD EFV+++G +FE TR GR+ GWLL+CDP +QS LA AL+ S IST AR
Sbjct 3 PDEAEFVDRLGLFFELLGATRTMGRVYGWLLICDPPQQSLTALAAALSVSKASISTVARQ 62
Query 74 LIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRS 133
L++ G +ERL + +R+ +R+ P F + ++ M + A+ L L + ++
Sbjct 63 LLEGGMVERLP-SPNRQHLYRVTPGGFTSVLETQLSLMRLGIEPAEFALSVLDEDRAEQR 121
Query 134 RRLREMRDLLAYMENVVSDAL 154
+R+ + RD + D L
Sbjct 122 QRVEDFRDFCEFCTRAYRDQL 142
>gi|114706399|ref|ZP_01439301.1| hypothetical protein FP2506_01405 [Fulvimarina pelagi HTCC2506]
gi|114538260|gb|EAU41382.1| hypothetical protein FP2506_01405 [Fulvimarina pelagi HTCC2506]
Length=168
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/147 (40%), Positives = 75/147 (52%), Gaps = 3/147 (2%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
F+E+MG + E L R+AGRL G LLV DP S +LA L S G ISTNAR+L G
Sbjct 23 FIERMGEHMEMEGLPRIAGRLFGLLLV-DPGTVSFSDLAERLGVSRGSISTNARLLEGKG 81
Query 79 FIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLRE 138
IER+AV G+R+ YFRL F R M E L D G R G P + +
Sbjct 82 LIERVAVDGERQDYFRLADRPFVNMVRGIAARMRETMTLIDDGCRDCGG--PSVNPGILA 139
Query 139 MRDLLAYMENVVSDALGRYSQRTGEDD 165
RD A + + R ++R G ++
Sbjct 140 TRDFFAEAVENLEELAARLAERCGREN 166
>gi|325002131|ref|ZP_08123243.1| regulatory protein, MarR [Pseudonocardia sp. P1]
Length=157
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/149 (33%), Positives = 77/149 (52%), Gaps = 1/149 (0%)
Query 17 MEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQ 76
++ V+++ FE L + GR++GWLL+ DP QS+ +LA L S IST RML
Sbjct 8 LDVVDEIAASFEREGLPLITGRVIGWLLISDPPEQSAAQLAEVLGVSRSSISTATRMLTP 67
Query 77 FGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRL 136
G +ER+ R FR+ P+ ++ ER + + + GL L D P R RL
Sbjct 68 GGLVERVRTRDSRVELFRIAPDGWSRMLAERHARATAFRRVLEHGLDVLADEPDARRDRL 127
Query 137 REMRDLLAYMENVVSDALGRY-SQRTGED 164
+ +L ++E+ + R+ S+RTG D
Sbjct 128 VNVHELYLFLESELPALWERWESRRTGGD 156
>gi|55980922|ref|YP_144219.1| hypothetical protein TTHA0953 [Thermus thermophilus HB8]
gi|55772335|dbj|BAD70776.1| conserved hypothetical protein [Thermus thermophilus HB8]
gi|333966596|gb|AEG33361.1| regulatory protein MarR [Thermus thermophilus SG0.5JP17-16]
Length=144
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/136 (35%), Positives = 77/136 (57%), Gaps = 5/136 (3%)
Query 13 EPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNAR 72
+P + +VE+ FE+ + R+AGR L +LLV DP +++E+A AL S G +S
Sbjct 2 DPHLARWVEEAARLFEAGGVPRMAGRALAFLLVADPPEPTAKEVAQALGVSKGALSPALG 61
Query 73 MLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQR 132
L++ +ER G+R + +RP A+ E+ R + ++LA+ GL +G+ P
Sbjct 62 YLVRLHLVERFRRPGERADRYTVRPGAWRRILEEQARMLGRFRELAERGLALVGENP--- 118
Query 133 SRRLREMRDLLAYMEN 148
RLRE+RDL A++E
Sbjct 119 --RLREVRDLYAFLER 132
>gi|46198895|ref|YP_004562.1| hypothetical protein TTC0587 [Thermus thermophilus HB27]
gi|46196519|gb|AAS80935.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length=144
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/136 (35%), Positives = 77/136 (57%), Gaps = 5/136 (3%)
Query 13 EPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNAR 72
+P + +VE+ FE+ + R+AGR L +LLV DP +++E+A AL S G +S
Sbjct 2 DPHLARWVEEAARLFEAGGVPRMAGRALAFLLVADPPEPTAKEVAQALGVSKGALSPALG 61
Query 73 MLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQR 132
L++ +ER G+R + +RP A+ E+ R + ++LA+ GL +G+ P
Sbjct 62 YLVRLHLLERFRRPGERADRYTMRPGAWRRILEEQARMLGRFRELAERGLALVGENP--- 118
Query 133 SRRLREMRDLLAYMEN 148
RLRE+RDL A++E
Sbjct 119 --RLREVRDLYAFLER 132
>gi|150400299|ref|YP_001324066.1| regulatory protein MarR [Methanococcus vannielii SB]
gi|150013002|gb|ABR55454.1| regulatory protein, MarR [Methanococcus vannielii SB]
Length=159
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 73/140 (53%), Gaps = 1/140 (0%)
Query 19 FVEQMGGYFESR-SLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQF 77
F+EQ G +FES S+ R+AGR+L +LL+CDP Q+S++L L S +S +L +
Sbjct 12 FIEQFGNFFESNGSVPRIAGRILAYLLICDPPYQNSKQLVERLNISKSSVSNMITLLTRA 71
Query 78 GFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLR 137
++++ G R Y+ + F + ++ L+ + G L + P+ S R+
Sbjct 72 KLVKQMNFPGQRERYYYIEEKCFETLLLTQFDTVSNLRIILKEGKALLENKTPELSNRIG 131
Query 138 EMRDLLAYMENVVSDALGRY 157
EM + ++E + + L +Y
Sbjct 132 EMDKMYEFLEIEMPELLKKY 151
>gi|159035849|ref|YP_001535102.1| hypothetical protein Sare_0176 [Salinispora arenicola CNS-205]
gi|157914684|gb|ABV96111.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length=153
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/130 (36%), Positives = 67/130 (52%), Gaps = 6/130 (4%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
+ E++G T G+LLGWLLVCDP Q++ +L A+ S +ST R+L Q G
Sbjct 9 YAEEVGVVLAQMGTTPAFGKLLGWLLVCDPPNQTTAQLCEAMGLSKASVSTGMRVLEQSG 68
Query 79 FIERLAVAGDRRTYFRLRPNAFAAG--ERERIRAMAELQDLADVGLRALGDAPPQRSRRL 136
+ R+ G R + + P+AFA E++R DL G+ +GDA + RL
Sbjct 69 MVRRVPSPG-RGHAYEMHPDAFARALDPTEKMRVFI---DLMQRGIDLIGDAQAPEASRL 124
Query 137 REMRDLLAYM 146
R RD A+M
Sbjct 125 RHTRDFYAFM 134
>gi|256379176|ref|YP_003102836.1| ArsR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255923479|gb|ACU38990.1| regulatory protein ArsR [Actinosynnema mirum DSM 43827]
Length=152
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/137 (32%), Positives = 79/137 (58%), Gaps = 3/137 (2%)
Query 11 GAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTN 70
G E + ++E+ +F + + GR+LG+LLVC P +++ EL+ L ASSG ISTN
Sbjct 4 GREARLAAWIERFAAHFAEEGIPLIGGRILGYLLVCQPSERTAAELSQELEASSGSISTN 63
Query 71 ARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRAL-GDAP 129
+ L+ G + + G + +R+ +A + ++ A+ +++L + G+R + GD
Sbjct 64 LKFLVNAGLVTKRTRRGRQAAQYRIDEKRWADLVQRKLDALVSVRELTESGMRLMSGD-- 121
Query 130 PQRSRRLREMRDLLAYM 146
P+R+ RLR + DL A++
Sbjct 122 PERAVRLRAVDDLYAWL 138
>gi|291297702|ref|YP_003508980.1| hypothetical protein Snas_0167 [Stackebrandtia nassauensis DSM
44728]
gi|290566922|gb|ADD39887.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM
44728]
Length=165
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/152 (36%), Positives = 82/152 (54%), Gaps = 7/152 (4%)
Query 18 EFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQF 77
E V + G + E R+AG L+G+LL+C PE QS E+A ALA S +ST R L Q
Sbjct 10 ELVGRFGVFVEMSGGQRIAGMLVGYLLICKPEHQSITEMADALAISKASVSTVIRQLQQG 69
Query 78 GFIERLAVAGDRRTYFRLRPNA-FAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRL 136
+ER+ V R+ Y+RL + R R + + +D+A GLR +GD P +R R+
Sbjct 70 LKVERVPVPDSRQHYYRLAGGGDWTEILRTRWKFLNAGRDVAAAGLRLVGDDPDRRE-RM 128
Query 137 REMRDLLAYM-ENVVSDALGRY----SQRTGE 163
+E D L ++ E + + R+ ++RT E
Sbjct 129 QEFADFLDFLVEEFSPELVSRWETYRNKRTAE 160
>gi|145592733|ref|YP_001157030.1| hypothetical protein Strop_0167 [Salinispora tropica CNB-440]
gi|145302070|gb|ABP52652.1| hypothetical protein Strop_0167 [Salinispora tropica CNB-440]
Length=153
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/130 (35%), Positives = 67/130 (52%), Gaps = 6/130 (4%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
+ E++G T G+LLGWLL+CDP RQ++ +L A+ S +ST R+L Q G
Sbjct 9 YAEEVGVVLARMGTTPAFGKLLGWLLICDPPRQTTAQLCEAMGLSKASVSTGMRVLEQSG 68
Query 79 FIERLAVAGDRRTYFRLRPNAFAAG--ERERIRAMAELQDLADVGLRALGDAPPQRSRRL 136
+ R+ G R + + P+AFA +R+R DL G+ +GDA + RL
Sbjct 69 MVRRVPSQG-RGHAYEMHPDAFARAIDPTDRMRVFI---DLMQRGIDLVGDAAAPEASRL 124
Query 137 REMRDLLAYM 146
R RD +M
Sbjct 125 RHTRDFYTFM 134
>gi|226312351|ref|YP_002772245.1| hypothetical protein BBR47_27640 [Brevibacillus brevis NBRC 100599]
gi|226095299|dbj|BAH43741.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length=146
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/104 (38%), Positives = 67/104 (65%), Gaps = 4/104 (3%)
Query 17 MEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQ 76
M+ +E+M + E++ L+R+AGR++G L+V E SSE++AT L S G +STN R+L++
Sbjct 1 MQLIEEMALHHENQGLSRIAGRIIGLLMVSQ-EPLSSEQIATTLQVSLGSVSTNMRILLK 59
Query 77 FGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADV 120
G E+ +V GDR +Y+ + P+A E E I+ + + L ++
Sbjct 60 SGIAEKKSVTGDRVSYYIVAPDAI---EEEFIQGLERILSLKNI 100
>gi|229822134|ref|YP_002883660.1| regulatory protein, MarR [Beutenbergia cavernae DSM 12333]
gi|229568047|gb|ACQ81898.1| regulatory protein, MarR [Beutenbergia cavernae DSM 12333]
Length=179
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/159 (36%), Positives = 82/159 (52%), Gaps = 15/159 (9%)
Query 2 SVNDGV-DQMGAEP-------DIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSS 53
S ++GV D++ P D FV+ + + + GR++G+LLV SS
Sbjct 4 STDEGVRDEVAPVPEAADDDADRWWFVDDFTALWSAGGAPAIEGRVIGYLLVTSRPYVSS 63
Query 54 EELATALAASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPN---AFAAGERERIRA 110
EL AL ASSG IST R L++ GFI+R V GDR YFR+ + +F AGER R
Sbjct 64 TELVAALGASSGSISTTTRRLVESGFIKRHHVPGDRSHYFRMDDDVWGSFLAGER---RY 120
Query 111 MAELQDLADVGLRALGDAPPQRS-RRLREMRDLLAYMEN 148
+ DLA L L ++ + RRL MRD + ++ +
Sbjct 121 LVRQADLAARALVDLDESLTDDARRRLENMRDYMEWLRS 159
>gi|169628945|ref|YP_001702594.1| hypothetical protein MAB_1857c [Mycobacterium abscessus ATCC
19977]
gi|169240912|emb|CAM61940.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=146
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/142 (34%), Positives = 72/142 (51%), Gaps = 1/142 (0%)
Query 18 EFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQF 77
E EQ+ + + R+ R+L LL + +S EL+ L ASSG IST+ RML
Sbjct 3 ESAEQLALMLTTHGMQRMTARVLTALLFTEQPTMTSSELSEQLQASSGAISTSIRMLTSV 62
Query 78 GFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLR 137
G ER+ V RR ++RLR NA+A + ++ +Q+ A G+ R+ RL
Sbjct 63 GLAERVPVPASRRDHYRLRDNAWAVLFTNQNAVLSAMQEAAAAGIAGTQKDSLARA-RLT 121
Query 138 EMRDLLAYMENVVSDALGRYSQ 159
+MRD A++ + L R+ Q
Sbjct 122 QMRDFYAFLLGEIPTLLERWRQ 143
>gi|120401792|ref|YP_951621.1| transcriptional regulator, TrmB [Mycobacterium vanbaalenii PYR-1]
gi|119954610|gb|ABM11615.1| transcriptional regulator, TrmB [Mycobacterium vanbaalenii PYR-1]
Length=153
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (32%), Positives = 71/151 (48%), Gaps = 1/151 (0%)
Query 10 MGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGIST 69
M P + + E++ L R+ R+L LL + + ELA L AS+G IS
Sbjct 1 MAPSPKVHDAAERLALVLAGHGLQRMTARVLAALLFSEQPSVTMAELADDLQASAGSISG 60
Query 70 NARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAP 129
+ L G ER+ RR +FRLRP+A+A + + +A D AD G+ G
Sbjct 61 ALKTLTAVGLAERVPAPSSRRDHFRLRPDAWAMLYTGQNQTIAAFMDAADAGIAVTGRTS 120
Query 130 PQRSRRLREMRDLLAYMENVVSDALGRYSQR 160
R +RL EMRD A++ + L R+ R
Sbjct 121 LAR-QRLVEMRDFYAFLMAEIPAVLERWHAR 150
>gi|332361826|gb|EGJ39629.1| hypothetical protein HMPREF9389_1487 [Streptococcus sanguinis
SK355]
Length=174
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/139 (29%), Positives = 75/139 (54%), Gaps = 5/139 (3%)
Query 9 QMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGIS 68
++ +P++ +F+E + +E + R+ GR+ G LV E S+E+++ L AS IS
Sbjct 18 KISLKPELQKFIENIAAIYEGYGIPRIGGRIFGLSLVFG-EPLSAEDMSALLQASRSSIS 76
Query 69 TNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDA 128
TN R L+ G+IE++ GDR YFR P A+ R A+ ++ + + G + L +
Sbjct 77 TNIRALMLNGWIEKVTFPGDRIDYFRFSPQAWERVLEHRKEALFPIKQIVERGQQELAED 136
Query 129 PPQRSRRLREMRDLLAYME 147
S +++ D+ A+++
Sbjct 137 ----SLEHQQLEDMKAWLD 151
>gi|134046004|ref|YP_001097490.1| hypothetical protein MmarC5_0969 [Methanococcus maripaludis C5]
gi|132663629|gb|ABO35275.1| conserved hypothetical protein [Methanococcus maripaludis C5]
Length=153
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/122 (26%), Positives = 69/122 (57%), Gaps = 1/122 (0%)
Query 19 FVEQMGGYFESRS-LTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQF 77
F+EQ G +FES + R+AGR+ +LL+CDP +++ L L S +S ++L++
Sbjct 12 FIEQFGQFFESTTAFPRIAGRIFAYLLICDPPYTTAKHLIERLNVSKSSVSNMIKLLLKT 71
Query 78 GFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLR 137
I +++ G+R Y++++ N + ++A+++++ + + G L + + S R+
Sbjct 72 KLIGQISFPGERERYYQVKDNCLESILTNELQAVSKIRVILNDGKNLLDEEDSKLSNRII 131
Query 138 EM 139
++
Sbjct 132 QL 133
>gi|342900706|ref|ZP_08722528.1| MarR family transcriptional regulator [Streptococcus macacae
NCTC 11558]
Length=162
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 74/140 (53%), Gaps = 2/140 (1%)
Query 18 EFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQF 77
+F+E + +E+ S+ R+ GR+ G L+ S+EEL+ L AS ISTN R LI
Sbjct 15 DFIEGIAAVYENYSIPRIGGRIFGLSLIMGVPL-SAEELSGLLQASRSSISTNIRSLIVN 73
Query 78 GFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLR 137
G+I+++ GDR YFR P A+ + R++ + L+++ + G L + +L
Sbjct 74 GWIDKVTFPGDRVDYFRFSPKAWESVLEHRLKELQPLKEIVERGQEELTAGSIEYG-QLE 132
Query 138 EMRDLLAYMENVVSDALGRY 157
+M+ LA ++ + L +
Sbjct 133 DMKVWLAIQQHYQEEMLKAW 152
>gi|302531677|ref|ZP_07284019.1| conserved hypothetical protein [Streptomyces sp. AA4]
gi|302440572|gb|EFL12388.1| conserved hypothetical protein [Streptomyces sp. AA4]
Length=161
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/147 (30%), Positives = 76/147 (52%), Gaps = 1/147 (0%)
Query 13 EPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNAR 72
E + +VE +G + R++ R+ L+ D + ++ ELA L+ S IS R
Sbjct 10 EDAVRRYVESLGLVMAQIGMQRMSARVFAALMTTDSGQLTAAELAEQLSVSPAAISGAVR 69
Query 73 MLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQR 132
L Q G + ++ G+RR +++L + + A +R R + +D A G+ ALG+ P
Sbjct 70 YLDQIGLVRKVREPGERRDHYQLYDDLWYATFLKRDRFLIMWRDAATEGIDALGEDTPA- 128
Query 133 SRRLREMRDLLAYMENVVSDALGRYSQ 159
+RL EMRD LA+M V++ R+ +
Sbjct 129 GKRLAEMRDFLAFMLVEVNNLYDRWHE 155
>gi|297154799|gb|ADI04511.1| hypothetical protein SBI_01390 [Streptomyces bingchenggensis
BCW-1]
Length=179
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 77/156 (50%), Gaps = 7/156 (4%)
Query 13 EPD-----IMEFVEQMGGYFESRS-LTRLAGRLLGWLLVCDPERQSSEELATALAASSGG 66
EPD + ++E++ +F ++ + GR + WL+V DP QS+ ++A A+ AS
Sbjct 8 EPDPDLEKVQAWMERVAAWFMHQAGWAPIMGRTMAWLMVSDPPEQSAAQIAKAVQASRAS 67
Query 67 ISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALG 126
++ R+L + ++ + AG R TY+R+ +A++ + R+ +M D+ GLR
Sbjct 68 LTGTLRLLTEARMVQAMTRAGKRATYYRITEDAWSGVLKRRLESMTSFVDITAEGLRLFP 127
Query 127 DAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTG 162
P + R+RE + ++ + R+ G
Sbjct 128 HGGPG-AARIRETHRVFEWLNSEAGPMWERWDALNG 162
>gi|324990884|gb|EGC22819.1| hypothetical protein HMPREF9388_0916 [Streptococcus sanguinis
SK353]
Length=174
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/139 (29%), Positives = 75/139 (54%), Gaps = 5/139 (3%)
Query 9 QMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGIS 68
++ +P++ +F+E + +E + R+ GR+ G LV E S+E+++ L AS IS
Sbjct 18 KISLKPELQKFIENIAAIYEGYGIPRIGGRIFGLSLVFG-EPLSAEDISGLLQASRSSIS 76
Query 69 TNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDA 128
TN R L+ G+IE++ GDR YFR A+ R +A+ ++ + + G + L
Sbjct 77 TNIRALMLNGWIEKVTFPGDRIDYFRFSSQAWERVLEHRKKALLPIKQIVEKGQQELA-- 134
Query 129 PPQRSRRLREMRDLLAYME 147
Q S +++ D+ A+++
Sbjct 135 --QDSIEHQQLEDMKAWLD 151
>gi|300782234|ref|YP_003762525.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299791748|gb|ADJ42123.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340523594|gb|AEK38799.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=162
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/134 (32%), Positives = 68/134 (51%), Gaps = 1/134 (0%)
Query 13 EPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNAR 72
E + +VE +G + R+ R+ L+ D R ++ +LA L S +S R
Sbjct 10 EDAVRRYVESLGLVLSQIGMQRMPARVFAALMTTDEGRLTAADLAAQLQVSPAAVSGAVR 69
Query 73 MLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQR 132
L Q G + + G+RR ++RL + + A +R R + +D A+ G+ ALG+ P
Sbjct 70 YLEQIGLVAKEREPGERRDHYRLYDDLWYATFMKRDRMITMWRDAAENGIDALGEDTPS- 128
Query 133 SRRLREMRDLLAYM 146
RRL EMRD L++M
Sbjct 129 GRRLAEMRDFLSFM 142
>gi|254283658|ref|ZP_04958626.1| regulatory protein, MarR [gamma proteobacterium NOR51-B]
gi|219679861|gb|EED36210.1| regulatory protein, MarR [gamma proteobacterium NOR51-B]
Length=164
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/104 (38%), Positives = 56/104 (54%), Gaps = 9/104 (8%)
Query 3 VNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLV----CDPERQSSEELAT 58
+ND + A EF+E MG + L R+AGRL G+ ++ C + ELA
Sbjct 1 MNDSMPDDSAPEQANEFIEHMGRVARADGLPRIAGRLFGFFILYGGPC-----ALGELAV 55
Query 59 ALAASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAA 102
L S G +STN R+L Q G +ER++ GDR+ YF+L + F A
Sbjct 56 KLEVSRGSVSTNTRLLEQLGLLERVSRRGDRKDYFQLTADPFPA 99
>gi|163796447|ref|ZP_02190407.1| hypothetical protein BAL199_10807 [alpha proteobacterium BAL199]
gi|159178297|gb|EDP62841.1| hypothetical protein BAL199_10807 [alpha proteobacterium BAL199]
Length=153
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/147 (34%), Positives = 73/147 (50%), Gaps = 7/147 (4%)
Query 16 IMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLI 75
+ EFVE+MG E L R+AGR++G L+V + S +LA L S G +STN R L
Sbjct 9 VEEFVERMGLVAEGDGLPRIAGRIMG-LMVIEGGPVSFAQLAQRLEISRGSVSTNTRFLE 67
Query 76 QFGFIERLAVAGDRRTYFRLRPNAFAA---GERERIRAMAELQDLADVGLRALGDAPPQR 132
+ G IER+ + GDR+ YF+L +A G ER+ + A AL D+
Sbjct 68 RLGVIERITIRGDRQDYFQLSKAPYAQLLRGSAERLSKAGAVVSQAKT---ALSDSDLGA 124
Query 133 SRRLREMRDLLAYMENVVSDALGRYSQ 159
RL E+ + + + R+S+
Sbjct 125 LHRLDELGEFYKALNDSFKQLAARFSK 151
>gi|108799168|ref|YP_639365.1| transcriptional regulator TrmB [Mycobacterium sp. MCS]
gi|119868283|ref|YP_938235.1| transcriptional regulator TrmB [Mycobacterium sp. KMS]
gi|126434776|ref|YP_001070467.1| transcriptional regulator TrmB [Mycobacterium sp. JLS]
gi|108769587|gb|ABG08309.1| transcriptional regulator, TrmB [Mycobacterium sp. MCS]
gi|119694372|gb|ABL91445.1| transcriptional regulator, TrmB [Mycobacterium sp. KMS]
gi|126234576|gb|ABN97976.1| transcriptional regulator, TrmB [Mycobacterium sp. JLS]
Length=159
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (33%), Positives = 68/131 (52%), Gaps = 1/131 (0%)
Query 27 FESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFGFIERLAVA 86
S L R+ R+L LL + ++ ELA L AS+G IS +ML+ G +ER+
Sbjct 17 LTSHGLQRMTSRVLAALLFTEQPTLTAGELAARLQASAGAISGAVKMLVSVGLVERVPAP 76
Query 87 GDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYM 146
G RR ++RLR +A+A + +A L+ A+ G+ R+ RL EMRD A++
Sbjct 77 GSRRDHYRLRDDAWAVLYTTQNEILAGLRKAAEDGIAVSPTGSAART-RLLEMRDFYAFL 135
Query 147 ENVVSDALGRY 157
+ + L R+
Sbjct 136 LDEMPAVLDRW 146
>gi|269795007|ref|YP_003314462.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
gi|269097192|gb|ACZ21628.1| predicted transcriptional regulator [Sanguibacter keddieii DSM
10542]
Length=175
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/132 (32%), Positives = 68/132 (52%), Gaps = 5/132 (3%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
FVE+ Y+ S+ L+ + GR++G+LL+ D S++ELA A AS G +ST R LI G
Sbjct 17 FVERYAQYWSSQGLSAIEGRMVGFLLLSD-RPVSADELAAASGASRGSVSTYTRRLIDIG 75
Query 79 FIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLRE 138
F+ R+ GDR YF + + + + ++LA L + P R
Sbjct 76 FLRRVRRPGDRSHYFVMDADVWGGFLDNEHAYLVRQRELASTALALMPPTGPAHER---- 131
Query 139 MRDLLAYMENVV 150
+R++ YME ++
Sbjct 132 IRNMHGYMEWLL 143
>gi|297561868|ref|YP_003680842.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296846316|gb|ADH68336.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length=163
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/145 (32%), Positives = 71/145 (49%), Gaps = 6/145 (4%)
Query 18 EFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQF 77
+FV + Y++S+ R GR++G+LLV D E S+EE+A S G +S + R L +
Sbjct 16 DFVGRFSEYWQSQGRPRAEGRIVGYLLVADREAVSAEEIADGARVSRGSVSQSVRRLREM 75
Query 78 GFIERLAVAGDRRTYFRLRPNA---FAAGERERIRAMAELQDLADVGLRALGDAPPQRSR 134
GF+E + G R + + F ER +R EL A R G +PP R+
Sbjct 76 GFVELVPAPGSRSRLVAMDEDVWGGFLRNERSYLRRQRELA--ASALERLPGLSPPART- 132
Query 135 RLREMRDLLAYMENVVSDALGRYSQ 159
RLR M D + +++ L + +
Sbjct 133 RLRNMHDYMTWLDEYHDTLLSSWEE 157
>gi|312141282|ref|YP_004008618.1| marr family transcriptional regulator [Rhodococcus equi 103S]
gi|311890621|emb|CBH49939.1| putative MarR family transcriptional regulator [Rhodococcus equi
103S]
Length=180
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
FVE+ Y++S +R+ GR+ G+LL+ D ++EELAT L AS G +ST R LI G
Sbjct 22 FVERFADYWQSAGASRIEGRIAGYLLIDDTPGVTAEELATELGASRGSVSTYVRRLIDRG 81
Query 79 FIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLRE 138
F++ + DR Y+ + + + G E A E Q A D R+
Sbjct 82 FVKLVRKPRDRTHYYAMDSDVW-GGFLENEHAYLENQRRLAAEALAHTDPDGPAYERVLN 140
Query 139 MRDLLAYM 146
MRD + ++
Sbjct 141 MRDYMGWI 148
>gi|325673885|ref|ZP_08153575.1| hypothetical protein HMPREF0724_11357 [Rhodococcus equi ATCC
33707]
gi|325555150|gb|EGD24822.1| hypothetical protein HMPREF0724_11357 [Rhodococcus equi ATCC
33707]
Length=184
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/129 (35%), Positives = 66/129 (52%), Gaps = 3/129 (2%)
Query 19 FVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFG 78
FVE+ Y++S +R+ GR+ G+LL+ D ++EELAT L AS G +ST R LI G
Sbjct 22 FVERFADYWQSAGASRIEGRIAGYLLIDDTPGVTAEELATELGASRGSVSTYVRRLIDRG 81
Query 79 FIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQ-DLADVGLRALGDAPPQRSRRLR 137
F++ + DR Y+ + + + G E A E Q LA L P R L
Sbjct 82 FVKLVRKPRDRTHYYAMDSDVW-GGFLENEHAYLENQRRLAAEALEHTDPDGPAYERVL- 139
Query 138 EMRDLLAYM 146
MRD + ++
Sbjct 140 NMRDYMGWI 148
Lambda K H
0.320 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128736477480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40