BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0679c
Length=165
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607819|ref|NP_215193.1| putative threonine rich protein [My... 320 3e-86
gi|289744402|ref|ZP_06503780.1| conserved hypothetical protein [... 318 1e-85
gi|289568620|ref|ZP_06448847.1| conserved threonine rich protein... 263 9e-69
gi|340625698|ref|YP_004744150.1| hypothetical protein MCAN_06801... 229 7e-59
gi|254231000|ref|ZP_04924327.1| conserved hypothetical threonine... 203 8e-51
gi|339293710|gb|AEJ45821.1| conserved threonine rich protein [My... 201 4e-50
gi|183981029|ref|YP_001849320.1| hypothetical protein MMAR_1008 ... 175 2e-42
gi|254822765|ref|ZP_05227766.1| hypothetical protein MintA_22739... 172 2e-41
gi|342858836|ref|ZP_08715490.1| hypothetical protein MCOL_08168 ... 172 2e-41
gi|118616544|ref|YP_904876.1| hypothetical protein MUL_0760 [Myc... 164 5e-39
gi|118465299|ref|YP_883630.1| hypothetical protein MAV_4496 [Myc... 152 1e-35
gi|41410235|ref|NP_963071.1| hypothetical protein MAP4137c [Myco... 152 2e-35
gi|336460543|gb|EGO39436.1| Protein of unknown function (DUF3060... 148 3e-34
gi|240167676|ref|ZP_04746335.1| hypothetical protein MkanA1_0007... 144 5e-33
gi|108797952|ref|YP_638149.1| hypothetical protein Mmcs_0979 [My... 129 1e-28
gi|119867049|ref|YP_937001.1| hypothetical protein Mkms_0997 [My... 129 1e-28
gi|120402285|ref|YP_952114.1| hypothetical protein Mvan_1274 [My... 129 2e-28
gi|315446011|ref|YP_004078890.1| hypothetical protein Mspyr1_450... 125 2e-27
gi|145225659|ref|YP_001136337.1| hypothetical protein Mflv_5083 ... 123 1e-26
gi|118472451|ref|YP_885779.1| hypothetical protein MSMEG_1393 [M... 122 2e-26
gi|296168530|ref|ZP_06850335.1| conserved hypothetical protein [... 116 1e-24
gi|333989331|ref|YP_004521945.1| hypothetical protein JDM601_069... 106 1e-21
gi|240171871|ref|ZP_04750530.1| hypothetical protein MkanA1_2132... 101 4e-20
gi|169630933|ref|YP_001704582.1| hypothetical protein MAB_3854 [... 86.3 2e-15
gi|183980593|ref|YP_001848884.1| hypothetical protein MMAR_0565 ... 63.9 7e-09
gi|118619805|ref|YP_908137.1| hypothetical protein MUL_4742 [Myc... 63.5 1e-08
gi|254777283|ref|ZP_05218799.1| hypothetical protein MaviaA2_218... 62.0 3e-08
gi|118466590|ref|YP_883970.1| hypothetical protein MAV_4846 [Myc... 62.0 3e-08
gi|41409900|ref|NP_962736.1| hypothetical protein MAP3802c [Myco... 61.6 4e-08
gi|120402227|ref|YP_952056.1| hypothetical protein Mvan_1215 [My... 60.8 7e-08
gi|108797953|ref|YP_638150.1| hypothetical protein Mmcs_0980 [My... 60.8 7e-08
gi|342859208|ref|ZP_08715862.1| hypothetical protein MCOL_10028 ... 60.5 8e-08
gi|240173240|ref|ZP_04751898.1| hypothetical protein MkanA1_2826... 59.7 2e-07
gi|41409950|ref|NP_962786.1| hypothetical protein MAP3852c [Myco... 58.9 2e-07
gi|336460295|gb|EGO39196.1| Protein of unknown function (DUF3060... 58.2 4e-07
gi|118464376|ref|YP_883921.1| hypothetical protein MAV_4794 [Myc... 58.2 4e-07
gi|240167678|ref|ZP_04746337.1| hypothetical protein MkanA1_0008... 58.2 4e-07
gi|254777231|ref|ZP_05218747.1| hypothetical protein MaviaA2_215... 57.8 5e-07
gi|333989332|ref|YP_004521946.1| transmembrane protein [Mycobact... 57.0 9e-07
gi|296167814|ref|ZP_06850000.1| conserved hypothetical protein [... 56.6 1e-06
gi|183981030|ref|YP_001849321.1| hypothetical protein MMAR_1009 ... 56.6 1e-06
gi|296167686|ref|ZP_06849932.1| conserved hypothetical protein [... 56.2 2e-06
gi|306782942|ref|ZP_07421264.1| conserved membrane protein [Myco... 55.5 2e-06
gi|308377389|ref|ZP_07668501.1| conserved membrane protein [Myco... 55.5 3e-06
gi|308369363|ref|ZP_07417492.2| conserved membrane protein [Myco... 55.5 3e-06
gi|15607820|ref|NP_215194.1| transmembrane protein [Mycobacteriu... 55.5 3e-06
gi|333990177|ref|YP_004522791.1| hypothetical protein JDM601_153... 55.1 3e-06
gi|118616545|ref|YP_904877.1| hypothetical protein MUL_0761 [Myc... 54.7 4e-06
gi|315446010|ref|YP_004078889.1| hypothetical protein Mspyr1_450... 54.7 4e-06
gi|15607455|ref|NP_214828.1| hypothetical protein Rv0314c [Mycob... 54.7 5e-06
>gi|15607819|ref|NP_215193.1| putative threonine rich protein [Mycobacterium tuberculosis H37Rv]
gi|15840082|ref|NP_335119.1| hypothetical protein MT0707 [Mycobacterium tuberculosis CDC1551]
gi|31791863|ref|NP_854356.1| putative threonine rich protein [Mycobacterium bovis AF2122/97]
66 more sequence titles
Length=165
Score = 320 bits (821), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/165 (99%), Positives = 165/165 (100%), Gaps = 0/165 (0%)
Query 1 VVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA 60
+VEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA
Sbjct 1 MVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA 60
Query 61 APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG 120
APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG
Sbjct 61 APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG 120
Query 121 GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct 121 GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
>gi|289744402|ref|ZP_06503780.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289756767|ref|ZP_06516145.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294993056|ref|ZP_06798747.1| hypothetical protein Mtub2_00745 [Mycobacterium tuberculosis
210]
gi|289684930|gb|EFD52418.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289712331|gb|EFD76343.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326905099|gb|EGE52032.1| conserved threonine rich protein [Mycobacterium tuberculosis
W-148]
Length=165
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/165 (99%), Positives = 164/165 (99%), Gaps = 0/165 (0%)
Query 1 VVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA 60
+VEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA
Sbjct 1 MVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA 60
Query 61 APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG 120
APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG
Sbjct 61 APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG 120
Query 121 GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
GANNKIAFDRIDERLVVVGLD TVTYKNGDPTIDNLGAGNRINKE
Sbjct 121 GANNKIAFDRIDERLVVVGLDKTVTYKNGDPTIDNLGAGNRINKE 165
>gi|289568620|ref|ZP_06448847.1| conserved threonine rich protein [Mycobacterium tuberculosis
T17]
gi|289542374|gb|EFD46022.1| conserved threonine rich protein [Mycobacterium tuberculosis
T17]
Length=167
Score = 263 bits (671), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 142/166 (86%), Positives = 144/166 (87%), Gaps = 10/166 (6%)
Query 10 RATHSRLATFALA------LAAAALP----LAGCSSTANPPAATTTPATATTTTATSGPT 59
R + +R A AL L LP GCSSTANPPAATTTPATATTTTATSGPT
Sbjct 2 RWSRNRCAPIALPTPGWRPLLWRWLPQRCRWPGCSSTANPPAATTTPATATTTTATSGPT 61
Query 60 AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV 119
AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV
Sbjct 62 AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV 121
Query 120 GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct 122 GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 167
>gi|340625698|ref|YP_004744150.1| hypothetical protein MCAN_06801 [Mycobacterium canettii CIPT
140010059]
gi|340003888|emb|CCC43020.1| conserved hypothetical threonine rich protein [Mycobacterium
canettii CIPT 140010059]
Length=166
Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 155/166 (94%), Positives = 158/166 (96%), Gaps = 1/166 (0%)
Query 1 VVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA 60
+VEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPAT TTTT +
Sbjct 1 MVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATPTTTTTATSGPT 60
Query 61 A-PTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV 119
A PTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGS+NTLTVNGTCETVTV
Sbjct 61 AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSNNTLTVNGTCETVTV 120
Query 120 GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct 121 GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 166
>gi|254231000|ref|ZP_04924327.1| conserved hypothetical threonine rich protein [Mycobacterium
tuberculosis C]
gi|124600059|gb|EAY59069.1| conserved hypothetical threonine rich protein [Mycobacterium
tuberculosis C]
Length=102
Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 101/102 (99%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 64 VTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN 123
+TTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN
Sbjct 1 MTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN 60
Query 124 NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct 61 NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 102
>gi|339293710|gb|AEJ45821.1| conserved threonine rich protein [Mycobacterium tuberculosis
CCDC5079]
gi|339297349|gb|AEJ49459.1| conserved threonine rich protein [Mycobacterium tuberculosis
CCDC5180]
Length=102
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/102 (99%), Positives = 101/102 (99%), Gaps = 0/102 (0%)
Query 64 VTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN 123
+TTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN
Sbjct 1 MTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN 60
Query 124 NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
NKIAFDRIDERLVVVGLD TVTYKNGDPTIDNLGAGNRINKE
Sbjct 61 NKIAFDRIDERLVVVGLDKTVTYKNGDPTIDNLGAGNRINKE 102
>gi|183981029|ref|YP_001849320.1| hypothetical protein MMAR_1008 [Mycobacterium marinum M]
gi|183174355|gb|ACC39465.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=158
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/137 (69%), Positives = 113/137 (83%), Gaps = 3/137 (2%)
Query 28 LPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGT 87
L LAGCS TA+PP ++T +AT TSGPTAAPT + G +TTASI+IG+ML YGSIGT
Sbjct 24 LGLAGCSETASPPGPSSTSGSAT---PTSGPTAAPTTSGGPTTTASIEIGNMLNYGSIGT 80
Query 88 TATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYK 147
TATLDCADGKSLNVAGS+N LTV GTC TVT+GG NNKI FD+ID+RL V+G+DNT+TYK
Sbjct 81 TATLDCADGKSLNVAGSENNLTVTGTCATVTIGGTNNKITFDKIDQRLTVLGIDNTITYK 140
Query 148 NGDPTIDNLGAGNRINK 164
G+P +DN+G+GN I K
Sbjct 141 AGEPKVDNIGSGNNIEK 157
>gi|254822765|ref|ZP_05227766.1| hypothetical protein MintA_22739 [Mycobacterium intracellulare
ATCC 13950]
Length=150
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/150 (62%), Positives = 120/150 (80%), Gaps = 3/150 (2%)
Query 16 LATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTV-TTGESTTASI 74
+ TFALA AAA L LAGCSSTANPPA ++T T ++ T ++G AAPT ++G STTAS+
Sbjct 1 MHTFALAPAAAILVLAGCSSTANPPAGSSTTTTKSSPTTSAG--AAPTTGSSGASTTASL 58
Query 75 QIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDER 134
+IG+ + YGS+GTT LDCA GKSLNVAGSDNTLTV G+C TV +GG NNKI D++++R
Sbjct 59 EIGNTVNYGSMGTTTNLDCATGKSLNVAGSDNTLTVTGSCSTVNIGGTNNKITLDKVEKR 118
Query 135 LVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+ V+G++NT+TYK+GDP +DNLG+ N INK
Sbjct 119 ITVLGMNNTITYKDGDPKVDNLGSDNTINK 148
>gi|342858836|ref|ZP_08715490.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT
3035]
gi|342133077|gb|EGT86280.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT
3035]
Length=161
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/151 (62%), Positives = 117/151 (78%), Gaps = 3/151 (1%)
Query 15 RLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTV-TTGESTTAS 73
RLA A+ AAAAL LAGCSSTANPPA ++T T ++ T ++G AAPT ++G STTAS
Sbjct 11 RLAVLAMTPAAAALVLAGCSSTANPPAGSSTTTTKSSATTSAG--AAPTTGSSGASTTAS 68
Query 74 IQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDE 133
I+IG+ + YGS+GTT TLDCA GKSLNV GSDN LTV GTCET TV G NNKI FD+++
Sbjct 69 IEIGNTINYGSMGTTTTLDCASGKSLNVGGSDNNLTVTGTCETATVSGTNNKITFDKVNT 128
Query 134 RLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
R+ V+G++NT+TYK+GDP +D +G N INK
Sbjct 129 RITVLGMNNTITYKDGDPKVDKIGQSNTINK 159
>gi|118616544|ref|YP_904876.1| hypothetical protein MUL_0760 [Mycobacterium ulcerans Agy99]
gi|118568654|gb|ABL03405.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=129
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/124 (67%), Positives = 100/124 (81%), Gaps = 0/124 (0%)
Query 39 PPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKS 98
PP +T+ + T TSGPTAAP+ + G +TTASI+IG+ML YGSIGTTATLD ADGKS
Sbjct 3 PPVPPGPSSTSGSATPTSGPTAAPSTSGGPTTTASIEIGNMLNYGSIGTTATLDRADGKS 62
Query 99 LNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGA 158
LNVAGS N LTV GTC TVT+GG NNKI FD+ID+RL V+G+DNT+TYK G+P +DN+G+
Sbjct 63 LNVAGSGNNLTVTGTCATVTIGGTNNKITFDKIDQRLTVLGIDNTITYKAGEPKVDNIGS 122
Query 159 GNRI 162
GN I
Sbjct 123 GNNI 126
>gi|118465299|ref|YP_883630.1| hypothetical protein MAV_4496 [Mycobacterium avium 104]
gi|118166586|gb|ABK67483.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=144
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/134 (62%), Positives = 105/134 (79%), Gaps = 3/134 (2%)
Query 32 GCSSTANPPAATTTPATATTTTATSGPTAAPTVTTG-ESTTASIQIGDMLTYGSIGTTAT 90
GCSSTANPPA ++T T +T T ++G AAPT +G STTASI+IG+ + YGS+GTT T
Sbjct 11 GCSSTANPPAGSSTTTTKSTATTSAG--AAPTTGSGGASTTASIEIGNTINYGSMGTTTT 68
Query 91 LDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGD 150
LDCA GKSLNV GSDNTLTV GTCE+ TV G NNKI FD+++ R+ V+G++NT+TYK+GD
Sbjct 69 LDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDGD 128
Query 151 PTIDNLGAGNRINK 164
P +D +G N INK
Sbjct 129 PKVDKIGQSNTINK 142
>gi|41410235|ref|NP_963071.1| hypothetical protein MAP4137c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254776931|ref|ZP_05218447.1| hypothetical protein MaviaA2_20001 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41399069|gb|AAS06687.1| hypothetical protein MAP_4137c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=161
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/134 (62%), Positives = 105/134 (79%), Gaps = 3/134 (2%)
Query 32 GCSSTANPPAATTTPATATTTTATSGPTAAPTVTTG-ESTTASIQIGDMLTYGSIGTTAT 90
GCSSTANPPA ++T T +T T ++G AAPT +G STTASI+IG+ + YGS+GTT T
Sbjct 28 GCSSTANPPAGSSTTTTKSTATTSAG--AAPTTGSGGASTTASIEIGNTINYGSMGTTTT 85
Query 91 LDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGD 150
LDCA GKSLNV GSDNTLTV GTCE+ TV G NNKI FD+++ R+ V+G++NT+TYK+GD
Sbjct 86 LDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDGD 145
Query 151 PTIDNLGAGNRINK 164
P +D +G N INK
Sbjct 146 PKVDKIGQSNTINK 159
>gi|336460543|gb|EGO39436.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=160
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/134 (62%), Positives = 105/134 (79%), Gaps = 4/134 (2%)
Query 32 GCSSTANPPAATTTPATATTTTATSGPTAAPTVTTG-ESTTASIQIGDMLTYGSIGTTAT 90
GCSSTANPPA ++T T +T T ++G AAPT +G STTASI+IG+ + YGS+GTT T
Sbjct 28 GCSSTANPPAGSSTTTTKSTATTSAG--AAPTTGSGGASTTASIEIGNTINYGSMGTT-T 84
Query 91 LDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGD 150
LDCA GKSLNV GSDNTLTV GTCE+ TV G NNKI FD+++ R+ V+G++NT+TYK+GD
Sbjct 85 LDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDGD 144
Query 151 PTIDNLGAGNRINK 164
P +D +G N INK
Sbjct 145 PKVDKIGQSNTINK 158
>gi|240167676|ref|ZP_04746335.1| hypothetical protein MkanA1_00070 [Mycobacterium kansasii ATCC
12478]
Length=88
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/86 (78%), Positives = 78/86 (91%), Gaps = 0/86 (0%)
Query 79 MLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVV 138
ML YGSIGTTATLDCADGKSLNVAGS+NTLTVNGTC TVT+GG NNKI FD+ID+ L V+
Sbjct 1 MLNYGSIGTTATLDCADGKSLNVAGSENTLTVNGTCSTVTIGGTNNKITFDKIDQHLSVL 60
Query 139 GLDNTVTYKNGDPTIDNLGAGNRINK 164
GL+NT+TYK+GDP +DN+G+GN INK
Sbjct 61 GLNNTITYKDGDPKVDNIGSGNTINK 86
>gi|108797952|ref|YP_638149.1| hypothetical protein Mmcs_0979 [Mycobacterium sp. MCS]
gi|108768371|gb|ABG07093.1| conserved hypothetical protein [Mycobacterium sp. MCS]
Length=136
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/110 (56%), Positives = 85/110 (78%), Gaps = 1/110 (0%)
Query 56 SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE 115
S T PT T G S+ A ++IG+ + YGS+GTTA +DCADGK+LNV GS+N LTV GTC
Sbjct 27 SSDTNTPTATAG-SSGAQVEIGNTINYGSVGTTAEVDCADGKALNVGGSNNKLTVTGTCA 85
Query 116 TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
V +GG +N I+F+R+D+ + VVGL+NT+TY++GDP ID+LG+ N+I K+
Sbjct 86 NVNIGGTDNTISFERVDKEITVVGLNNTITYRDGDPKIDDLGSNNKITKQ 135
>gi|119867049|ref|YP_937001.1| hypothetical protein Mkms_0997 [Mycobacterium sp. KMS]
gi|126433615|ref|YP_001069306.1| hypothetical protein Mjls_1007 [Mycobacterium sp. JLS]
gi|119693138|gb|ABL90211.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126233415|gb|ABN96815.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=141
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/110 (56%), Positives = 85/110 (78%), Gaps = 1/110 (0%)
Query 56 SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE 115
S T PT T G S+ A ++IG+ + YGS+GTTA +DCADGK+LNV GS+N LTV GTC
Sbjct 32 SSDTNTPTATAG-SSGAQVEIGNTINYGSVGTTAEVDCADGKALNVGGSNNKLTVTGTCA 90
Query 116 TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE 165
V +GG +N I+F+R+D+ + VVGL+NT+TY++GDP ID+LG+ N+I K+
Sbjct 91 NVNIGGTDNTISFERVDKEITVVGLNNTITYRDGDPKIDDLGSNNKITKQ 140
>gi|120402285|ref|YP_952114.1| hypothetical protein Mvan_1274 [Mycobacterium vanbaalenii PYR-1]
gi|119955103|gb|ABM12108.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=133
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/111 (58%), Positives = 86/111 (78%), Gaps = 1/111 (0%)
Query 54 ATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGT 113
+TS T +PT T G S A ++IG+ + YGS GTTA +DCADGKSLNV GS+NTLTV GT
Sbjct 23 STSDDTNSPTATAGTSG-AQVEIGNTINYGSFGTTADIDCADGKSLNVGGSNNTLTVKGT 81
Query 114 CETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
C V +GGA+NKI+F+R+D L VVGL+NTVTY++GDP +++ G+ N I++
Sbjct 82 CANVNIGGADNKISFERVDAELSVVGLNNTVTYRDGDPKVNDTGSNNSISR 132
>gi|315446011|ref|YP_004078890.1| hypothetical protein Mspyr1_45010 [Mycobacterium sp. Spyr1]
gi|315264314|gb|ADU01056.1| hypothetical protein Mspyr1_45010 [Mycobacterium sp. Spyr1]
Length=125
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 90/142 (64%), Gaps = 22/142 (15%)
Query 23 LAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTY 82
L AAA+ LAGCS G PTVT G S A I+IG+ + Y
Sbjct 5 LGAAAVTLAGCSF---------------------GGGDDPTVTAGTSG-AQIEIGNTINY 42
Query 83 GSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDN 142
GS GTTA +DCADGKS+NV GS+NTLTV GTC +GGA+NKI F+R++ L VVGL+N
Sbjct 43 GSFGTTAEIDCADGKSVNVGGSNNTLTVKGTCAKANIGGADNKIDFERVETELSVVGLNN 102
Query 143 TVTYKNGDPTIDNLGAGNRINK 164
TVTY++GDP +++ G+ N I K
Sbjct 103 TVTYRDGDPQVNDTGSNNTITK 124
>gi|145225659|ref|YP_001136337.1| hypothetical protein Mflv_5083 [Mycobacterium gilvum PYR-GCK]
gi|145218145|gb|ABP47549.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=132
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/109 (57%), Positives = 81/109 (75%), Gaps = 1/109 (0%)
Query 56 SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE 115
SG PTVT G S A ++IG+ + YGS GTTA +DCADGKS+NV GS+NTLTV GTC
Sbjct 24 SGDGDNPTVTAGTSG-AQVEIGNTINYGSFGTTAEIDCADGKSVNVGGSNNTLTVKGTCA 82
Query 116 TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+GGA+NKI F+R++ L VVGL+NTVTY++GDP +++ G+ N I K
Sbjct 83 KANIGGADNKIDFERVETELSVVGLNNTVTYRDGDPQVNDTGSNNTITK 131
>gi|118472451|ref|YP_885779.1| hypothetical protein MSMEG_1393 [Mycobacterium smegmatis str.
MC2 155]
gi|118173738|gb|ABK74634.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=136
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/109 (55%), Positives = 84/109 (78%), Gaps = 1/109 (0%)
Query 56 SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE 115
S T P+ T G S+ +++IG+ + Y S+GTTA +DCADGKSL V G++NTLTV GTC
Sbjct 28 SSDTNTPSATAG-SSGVNVEIGNTINYMSVGTTADIDCADGKSLTVGGANNTLTVKGTCA 86
Query 116 TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
V +GG++NKI F++ID+ L VVGL+NT+TY++GDP I+N G+GN ++K
Sbjct 87 NVNIGGSDNKITFEKIDKDLTVVGLNNTITYRDGDPKINNTGSGNSVSK 135
>gi|296168530|ref|ZP_06850335.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896672|gb|EFG76310.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=82
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/80 (69%), Positives = 67/80 (84%), Gaps = 0/80 (0%)
Query 85 IGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTV 144
+GTT TLDCA GKSLNV GSDNTLTV G C T+TVGG NNKI D++D R+ VVGL+NT+
Sbjct 1 MGTTTTLDCASGKSLNVGGSDNTLTVTGDCATLTVGGTNNKITLDKVDTRISVVGLNNTI 60
Query 145 TYKNGDPTIDNLGAGNRINK 164
TYK+G+P +DNLG+GN I+K
Sbjct 61 TYKDGEPKVDNLGSGNTISK 80
>gi|333989331|ref|YP_004521945.1| hypothetical protein JDM601_0691 [Mycobacterium sp. JDM601]
gi|333485299|gb|AEF34691.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=134
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/85 (57%), Positives = 65/85 (77%), Gaps = 0/85 (0%)
Query 78 DMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVV 137
D + YGS GTT+ +DCADGKSLNVAGS+N LTV G CE V V GA+N+I +R+D+ L +
Sbjct 46 DTIDYGSFGTTSAVDCADGKSLNVAGSNNRLTVRGRCEAVNVAGADNRITVERVDKSLTI 105
Query 138 VGLDNTVTYKNGDPTIDNLGAGNRI 162
GL+N+V Y+ G+P +D+ G+GN I
Sbjct 106 TGLNNSVAYRAGEPRVDDRGSGNTI 130
>gi|240171871|ref|ZP_04750530.1| hypothetical protein MkanA1_21325 [Mycobacterium kansasii ATCC
12478]
Length=128
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/90 (54%), Positives = 65/90 (73%), Gaps = 0/90 (0%)
Query 75 QIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDER 134
++ + + G+ G T TLDCA GKSLN+ GS NTLTV G C V +GG +NKI+F+ I+
Sbjct 38 EMNNTINDGTFGKTETLDCAGGKSLNIGGSKNTLTVKGRCAKVIIGGDDNKISFENIETE 97
Query 135 LVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
L V GL+NTVTY++GDP++ +LG GN I K
Sbjct 98 LTVAGLNNTVTYRDGDPSVADLGTGNSITK 127
>gi|169630933|ref|YP_001704582.1| hypothetical protein MAB_3854 [Mycobacterium abscessus ATCC 19977]
gi|169242900|emb|CAM63928.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=153
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/91 (46%), Positives = 55/91 (61%), Gaps = 0/91 (0%)
Query 74 IQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDE 133
+ IGD G G T T C GKSLN+ G++NTLT+ G CETVTV G +N + F +
Sbjct 61 VNIGDETVIGYFGQTTTATCEAGKSLNITGANNTLTITGPCETVTVSGFSNTVTFGELKT 120
Query 134 RLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+ V G N +TYK G+P ++N G+ N I K
Sbjct 121 EVTVTGYGNKLTYKTGEPKVNNYGSNNTIQK 151
>gi|183980593|ref|YP_001848884.1| hypothetical protein MMAR_0565 [Mycobacterium marinum M]
gi|183173919|gb|ACC39029.1| conserved membrane protein [Mycobacterium marinum M]
Length=239
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/102 (37%), Positives = 57/102 (56%), Gaps = 2/102 (1%)
Query 63 TVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGA 122
T T G ST+A G ++ + + T+ C D +NV+G NT+T+ G C +V+V G
Sbjct 139 TPTAGPSTSAGPPAGSTISVVGVNQSQTITCND-NIVNVSGMSNTVTITGHCASVSVSGL 197
Query 123 NNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
N + + D R+ GL+N VTY++G P I G+GN I +
Sbjct 198 QNTVTVETAD-RITASGLNNKVTYQSGSPKISKSGSGNVIEQ 238
>gi|118619805|ref|YP_908137.1| hypothetical protein MUL_4742 [Mycobacterium ulcerans Agy99]
gi|118571915|gb|ABL06666.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=242
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/102 (37%), Positives = 57/102 (56%), Gaps = 2/102 (1%)
Query 63 TVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGA 122
T T G ST+A G ++ + + T+ C D +NV+G NT+T+ G C +V+V G
Sbjct 142 TPTAGPSTSAGPPAGSTISVVGVNQSQTITCND-NIVNVSGMSNTVTITGHCASVSVSGL 200
Query 123 NNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
N + + D R+ GL+N VTY++G P I G+GN I +
Sbjct 201 QNTVTVETAD-RITASGLNNKVTYQSGSPKISKSGSGNVIEQ 241
>gi|254777283|ref|ZP_05218799.1| hypothetical protein MaviaA2_21801 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=220
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/165 (31%), Positives = 74/165 (45%), Gaps = 32/165 (19%)
Query 16 LATFALALAA-----AALPLAGCSSTAN-----------PPAATTTPATATTTTATSGPT 59
+A LALA AA L+G S N PP +TTPA +T+ + P
Sbjct 71 IAVGVLALAGGIAAFAAHQLSGVKSIINSPPTISRTFGPPPGISTTPAPSTSRRTPTSPA 130
Query 60 AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV 119
A P G L+ I TL C D ++V+G NT+ + G C +++V
Sbjct 131 APP--------------GTELSVAGINENRTLAC-DDNPVSVSGVSNTVVITGHCTSLSV 175
Query 120 GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
G N + + + ER+ G +N VTY +G P+I N G N + +
Sbjct 176 SGVQNTVTVEAV-ERIDASGFNNKVTYHSGTPSISNSGGSNVVGR 219
>gi|118466590|ref|YP_883970.1| hypothetical protein MAV_4846 [Mycobacterium avium 104]
gi|118167877|gb|ABK68774.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=220
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/165 (31%), Positives = 74/165 (45%), Gaps = 32/165 (19%)
Query 16 LATFALALAA-----AALPLAGCSSTAN-----------PPAATTTPATATTTTATSGPT 59
+A LALA AA L+G S N PP +TTPA +T+ + P
Sbjct 71 IAVGVLALAGGIAAFAAHQLSGVKSIINSPPTISRTFGPPPGISTTPAPSTSRRTPTSPA 130
Query 60 AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV 119
A P G L+ I TL C D ++V+G NT+ + G C +++V
Sbjct 131 APP--------------GTELSVAGINENRTLAC-DDNPVSVSGVSNTVVITGHCTSLSV 175
Query 120 GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
G N + + + ER+ G +N VTY +G P+I N G N + +
Sbjct 176 SGVQNTVTVEAV-ERIGASGFNNKVTYHSGTPSISNSGGSNVVGR 219
>gi|41409900|ref|NP_962736.1| hypothetical protein MAP3802c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398733|gb|AAS06352.1| hypothetical protein MAP_3802c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460237|gb|EGO39140.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=220
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/165 (31%), Positives = 74/165 (45%), Gaps = 32/165 (19%)
Query 16 LATFALAL-----AAAALPLAGCSSTAN-----------PPAATTTPATATTTTATSGPT 59
+A LAL A AA L+G S N PP +TTPA +T+ + P
Sbjct 71 IAVGVLALTGGIAAFAAHQLSGVKSIINSPPTISRTFGPPPGISTTPAPSTSRRTPTSPA 130
Query 60 AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV 119
A P G L+ I TL C D ++V+G NT+ + G C +++V
Sbjct 131 APP--------------GTELSVAGINENRTLAC-DDNPVSVSGVSNTVVITGHCTSLSV 175
Query 120 GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
G N + + + ER+ G +N VTY +G P+I N G N + +
Sbjct 176 SGVQNTVTVEAV-ERIDASGFNNKVTYHSGTPSISNSGGSNVVGR 219
>gi|120402227|ref|YP_952056.1| hypothetical protein Mvan_1215 [Mycobacterium vanbaalenii PYR-1]
gi|119955045|gb|ABM12050.1| putative conserved membrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=233
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/130 (32%), Positives = 62/130 (48%), Gaps = 4/130 (3%)
Query 36 TANPPAATTTPATATTTTATSGPTAAPTVTTGESTT--ASIQIGDMLTYGSIGTTATLDC 93
T +P +AT P + T EST +++ G ++ G + T T+ C
Sbjct 104 TGSPDSATPIPVPPISGGGGPLDPPPSVQTRIESTEQIVTVESGGFVSLGGVETRQTVVC 163
Query 94 ADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTI 153
DG ++N++G +NT+ V G C VTV G N + + D + G DN VTY+ G P I
Sbjct 164 DDG-TVNISGVNNTIEVQGACTMVTVSGVENTVTVESAD-TISASGFDNRVTYRTGTPEI 221
Query 154 DNLGAGNRIN 163
G GN +
Sbjct 222 SKSGRGNVVE 231
>gi|108797953|ref|YP_638150.1| hypothetical protein Mmcs_0980 [Mycobacterium sp. MCS]
gi|119867050|ref|YP_937002.1| hypothetical protein Mkms_0998 [Mycobacterium sp. KMS]
gi|126433616|ref|YP_001069307.1| hypothetical protein Mjls_1008 [Mycobacterium sp. JLS]
gi|108768372|gb|ABG07094.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
gi|119693139|gb|ABL90212.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
gi|126233416|gb|ABN96816.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=125
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/83 (43%), Positives = 47/83 (57%), Gaps = 5/83 (6%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
G + T+DC D L+V G+ N + GTC VT+ G+ N + D + + V G D TV
Sbjct 41 GLSQTIDCRD-SVLHVNGNGNQVYALGTCYAVTMQGSGNLVVADNVINDITVYGWDQTVM 99
Query 146 YKNGDPTIDN----LGAGNRINK 164
YKNGDP I + LG NRIN+
Sbjct 100 YKNGDPIIWDRGRELGMTNRINR 122
>gi|342859208|ref|ZP_08715862.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT
3035]
gi|342133449|gb|EGT86652.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT
3035]
Length=227
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/131 (30%), Positives = 62/131 (48%), Gaps = 12/131 (9%)
Query 34 SSTANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDC 93
S T++PP+ +T P T + P+ +P G L+ I T+ C
Sbjct 108 SKTSSPPSISTNPGLTTPRRRSPSPSTSPAAPPGTE----------LSVAGINENRTITC 157
Query 94 ADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTI 153
D ++V+G NT+T+ G C +++V G N I + +D + G DN VTY +G P I
Sbjct 158 ND-NIVSVSGVSNTVTITGHCTSLSVSGVQNSITVEAVDS-IEASGFDNKVTYHSGAPKI 215
Query 154 DNLGAGNRINK 164
N G N + +
Sbjct 216 SNSGGSNVVQQ 226
>gi|240173240|ref|ZP_04751898.1| hypothetical protein MkanA1_28266 [Mycobacterium kansasii ATCC
12478]
Length=244
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/128 (29%), Positives = 62/128 (49%), Gaps = 12/128 (9%)
Query 37 ANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADG 96
+NP P+ + T T T+GP +P G + L+ + TLDC D
Sbjct 128 SNPSGTVPPPSGSKTQTPTAGPATSPAPPPGGN----------LSVSGLNENKTLDCND- 176
Query 97 KSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNL 156
+ ++G NT+ + G C ++TV G N + D +D + G++N VTY +G P +
Sbjct 177 SVVEISGMSNTVVITGHCASLTVSGIENTVTVDAVD-TIEASGINNKVTYHSGSPKVSKS 235
Query 157 GAGNRINK 164
G+GN + +
Sbjct 236 GSGNVVQQ 243
>gi|41409950|ref|NP_962786.1| hypothetical protein MAP3852c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398783|gb|AAS06402.1| hypothetical protein MAP_3852c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=195
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (42%), Positives = 46/79 (59%), Gaps = 2/79 (2%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
GTT +L C G L+V+G DNT+T+ G C +V+V G N+IA D D + G N V
Sbjct 118 GTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAGAGNVVV 175
Query 146 YKNGDPTIDNLGAGNRINK 164
Y G P + N G+GN + +
Sbjct 176 YHWGSPKVVNAGSGNVVRQ 194
>gi|336460295|gb|EGO39196.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=164
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (42%), Positives = 46/79 (59%), Gaps = 2/79 (2%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
GTT +L C G L+V+G DNT+T+ G C +V+V G N+IA D D + G N V
Sbjct 87 GTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAGAGNVVV 144
Query 146 YKNGDPTIDNLGAGNRINK 164
Y G P + N G+GN + +
Sbjct 145 YHWGSPKVVNAGSGNVVRQ 163
>gi|118464376|ref|YP_883921.1| hypothetical protein MAV_4794 [Mycobacterium avium 104]
gi|118165663|gb|ABK66560.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=164
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (56%), Gaps = 2/85 (2%)
Query 80 LTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVG 139
L GTT +L C G L+V+G DNT+T+ G C +V+V G N+IA D D + G
Sbjct 81 LQVSGAGTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAG 138
Query 140 LDNTVTYKNGDPTIDNLGAGNRINK 164
N V Y G P + N G+GN + +
Sbjct 139 AGNVVVYHWGSPKVVNAGSGNVVRQ 163
>gi|240167678|ref|ZP_04746337.1| hypothetical protein MkanA1_00080 [Mycobacterium kansasii ATCC
12478]
Length=128
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 46/83 (56%), Gaps = 5/83 (6%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
G LDC D +L V G+ N +T GTC VTV G++N + D + + V G D TV
Sbjct 44 GLEQVLDCND-STLLVNGTANIITAKGTCWAVTVMGSSNTVVADTVINDITVYGWDQTVF 102
Query 146 YKNGDPTIDN----LGAGNRINK 164
+KNGDP I + LG NR+ +
Sbjct 103 FKNGDPFIWDRGRELGMVNRLQR 125
>gi|254777231|ref|ZP_05218747.1| hypothetical protein MaviaA2_21539 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=156
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/79 (42%), Positives = 46/79 (59%), Gaps = 2/79 (2%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
GTT +L C G L+V+G DNT+T+ G C +V+V G N+IA D D + G N V
Sbjct 79 GTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAGAGNVVV 136
Query 146 YKNGDPTIDNLGAGNRINK 164
Y G P + N G+GN + +
Sbjct 137 YHWGSPKVVNAGSGNVVRQ 155
>gi|333989332|ref|YP_004521946.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333485300|gb|AEF34692.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=125
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/92 (39%), Positives = 50/92 (55%), Gaps = 6/92 (6%)
Query 77 GDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLV 136
GD YG + T TLDC +G +L + G +NT+ G C VT+ G+ N + + I +
Sbjct 33 GDTHVYG-VHETRTLDC-NGGTLFINGVNNTVHAMGNCWAVTLQGSQNTVIAETIINDVT 90
Query 137 VVGLDNTVTYKNGDPTIDN----LGAGNRINK 164
V G D TV Y NGDP + + LG NR+ +
Sbjct 91 VYGYDQTVYYHNGDPLLFDRGRELGMTNRLQR 122
>gi|296167814|ref|ZP_06850000.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897044|gb|EFG76664.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=174
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (42%), Positives = 45/79 (57%), Gaps = 2/79 (2%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
GTT T+ C G L+V+G NT+TV G C +VTV G +N++A D D + G N VT
Sbjct 97 GTTKTVGC-HGGYLSVSGQANTVTVTGHCTSVTVSGHDNRVAVDSADA-VSTSGTSNAVT 154
Query 146 YKNGDPTIDNLGAGNRINK 164
Y G P + N G N + +
Sbjct 155 YHWGSPNVANAGTANTVKQ 173
>gi|183981030|ref|YP_001849321.1| hypothetical protein MMAR_1009 [Mycobacterium marinum M]
gi|183174356|gb|ACC39466.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=125
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (40%), Positives = 45/83 (55%), Gaps = 5/83 (6%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
G TLDC D +L V G+ N +T GTC VTV G++N + D + + G D TV
Sbjct 41 GIVRTLDCND-STLFVNGTGNIITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVF 99
Query 146 YKNGDPTIDN----LGAGNRINK 164
+ NGDP I + LG NR+ +
Sbjct 100 FHNGDPFIWDRGRELGMVNRLQR 122
>gi|296167686|ref|ZP_06849932.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897099|gb|EFG76712.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=230
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/155 (32%), Positives = 73/155 (48%), Gaps = 8/155 (5%)
Query 16 LATFALALAA-----AALPLAGCSST-ANPPAATTTPATATTTTATSGPTAAPTVTTGES 69
+A LALA AA L+G S ++PP T T + T ++ +T S
Sbjct 77 IAVGVLALAGGIAAFAAHQLSGVRSIISSPPTFTNTFSPPGGTVPSTTTRTRTPRSTTTS 136
Query 70 TTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFD 129
T+ + G +T +G T C D +NV G NT+ ++G C + V G N I D
Sbjct 137 TSPTPPPGSQVTISGMGENRTFACND-NVVNVTGVSNTVVISGHCANLAVSGVQNDITVD 195
Query 130 RIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+D + V GL N VTY +G P + N G+ N + +
Sbjct 196 AVDS-IDVSGLSNKVTYHSGTPKVSNTGSANVVER 229
>gi|306782942|ref|ZP_07421264.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787310|ref|ZP_07425632.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791863|ref|ZP_07430165.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
7 more sequence titles
Length=220
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (30%), Positives = 56/117 (48%), Gaps = 9/117 (7%)
Query 48 TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT 107
T + + A PTA P T + G L+ + T+ C D +++V+G NT
Sbjct 112 TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACND-STVSVSGMSNT 163
Query 108 LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+ + G C ++TV G N + D +D + G +N VTY +G P I N G N + +
Sbjct 164 VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ 219
>gi|308377389|ref|ZP_07668501.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308355951|gb|EFP44802.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
Length=283
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (30%), Positives = 56/117 (48%), Gaps = 9/117 (7%)
Query 48 TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT 107
T + + A PTA P T + G L+ + T+ C D +++V+G NT
Sbjct 175 TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACND-STVSVSGMSNT 226
Query 108 LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+ + G C ++TV G N + D +D + G +N VTY +G P I N G N + +
Sbjct 227 VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ 282
>gi|308369363|ref|ZP_07417492.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308375123|ref|ZP_07442788.2| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308327865|gb|EFP16716.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308347376|gb|EFP36227.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
Length=217
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (30%), Positives = 56/117 (48%), Gaps = 9/117 (7%)
Query 48 TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT 107
T + + A PTA P T + G L+ + T+ C D +++V+G NT
Sbjct 109 TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACND-STVSVSGMSNT 160
Query 108 LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+ + G C ++TV G N + D +D + G +N VTY +G P I N G N + +
Sbjct 161 VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ 216
>gi|15607820|ref|NP_215194.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15840083|ref|NP_335120.1| hypothetical protein MT0708 [Mycobacterium tuberculosis CDC1551]
gi|31791864|ref|NP_854357.1| transmembrane protein [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=124
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)
Query 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
G TLDC + +L V G+ N +T GTC VTV G++N + D I + V G D TV
Sbjct 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
Query 146 YKNGDPTIDN----LGAGNRINK 164
++NGDP I + LG NR+ +
Sbjct 100 FRNGDPFIWDRGRELGMVNRLQR 122
>gi|333990177|ref|YP_004522791.1| hypothetical protein JDM601_1537 [Mycobacterium sp. JDM601]
gi|333486145|gb|AEF35537.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=199
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/125 (34%), Positives = 59/125 (48%), Gaps = 4/125 (3%)
Query 40 PAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSL 99
P T P+TA T + S P P + + T D +T G TL CA G +
Sbjct 78 PGFPTVPSTAAPTPSRSVPVVPPASASPANPTPGR--ADTITVSGAGQDKTLACA-GNQV 134
Query 100 NVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAG 159
+V+G NT+T+ G C +TV G N I D + G+DN VTY+ GDP + G
Sbjct 135 SVSGVRNTITLTGRCAGLTVSGIGNVITVD-FTPAITTSGVDNRVTYRFGDPEVSTSGFD 193
Query 160 NRINK 164
N + +
Sbjct 194 NVVVR 198
>gi|118616545|ref|YP_904877.1| hypothetical protein MUL_0761 [Mycobacterium ulcerans Agy99]
gi|118568655|gb|ABL03406.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans
Agy99]
Length=125
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/125 (36%), Positives = 63/125 (51%), Gaps = 10/125 (8%)
Query 44 TTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAG 103
TT A + TT+A A ++T A+ + GD G G TLDC D +L V G
Sbjct 4 TTAAGSLTTSAL----AVAVLSTAPPPVANAKNGDTHVTGE-GIVRTLDCND-SALFVNG 57
Query 104 SDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDN----LGAG 159
+ N +T GTC VTV G++N + D + + G D TV + NGDP I + LG
Sbjct 58 TGNIITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVFFHNGDPFIWDRGRELGMV 117
Query 160 NRINK 164
+R+ +
Sbjct 118 DRLQR 122
>gi|315446010|ref|YP_004078889.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
gi|315264313|gb|ADU01055.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
Length=125
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 45/84 (54%), Gaps = 5/84 (5%)
Query 85 IGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTV 144
+G T+DC D +L V G+ N + G C VTV G++N + D + + V G D V
Sbjct 40 VGVVRTIDCKD-STLFVNGNGNQVFAIGNCYAVTVQGSSNLVVVDSVANDITVYGWDQKV 98
Query 145 TYKNGDPTIDN----LGAGNRINK 164
YKNG P + + LG N+IN+
Sbjct 99 FYKNGSPFVWDRGRELGMTNQINR 122
>gi|15607455|ref|NP_214828.1| hypothetical protein Rv0314c [Mycobacterium tuberculosis H37Rv]
gi|148660080|ref|YP_001281603.1| hypothetical protein MRA_0323 [Mycobacterium tuberculosis H37Ra]
gi|148821510|ref|YP_001286264.1| hypothetical protein TBFG_10319 [Mycobacterium tuberculosis F11]
49 more sequence titles
Length=220
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/117 (30%), Positives = 55/117 (48%), Gaps = 9/117 (7%)
Query 48 TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT 107
T + + A PTA P T + G L+ + T+ C D ++V+G NT
Sbjct 112 TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACNDSI-VSVSGMSNT 163
Query 108 LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK 164
+ + G C ++TV G N + D +D + G +N VTY +G P I N G N + +
Sbjct 164 VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ 219
Lambda K H
0.309 0.124 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128736477480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40