BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0679c

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607819|ref|NP_215193.1|  putative threonine rich protein [My...   320    3e-86
gi|289744402|ref|ZP_06503780.1|  conserved hypothetical protein [...   318    1e-85
gi|289568620|ref|ZP_06448847.1|  conserved threonine rich protein...   263    9e-69
gi|340625698|ref|YP_004744150.1|  hypothetical protein MCAN_06801...   229    7e-59
gi|254231000|ref|ZP_04924327.1|  conserved hypothetical threonine...   203    8e-51
gi|339293710|gb|AEJ45821.1|  conserved threonine rich protein [My...   201    4e-50
gi|183981029|ref|YP_001849320.1|  hypothetical protein MMAR_1008 ...   175    2e-42
gi|254822765|ref|ZP_05227766.1|  hypothetical protein MintA_22739...   172    2e-41
gi|342858836|ref|ZP_08715490.1|  hypothetical protein MCOL_08168 ...   172    2e-41
gi|118616544|ref|YP_904876.1|  hypothetical protein MUL_0760 [Myc...   164    5e-39
gi|118465299|ref|YP_883630.1|  hypothetical protein MAV_4496 [Myc...   152    1e-35
gi|41410235|ref|NP_963071.1|  hypothetical protein MAP4137c [Myco...   152    2e-35
gi|336460543|gb|EGO39436.1|  Protein of unknown function (DUF3060...   148    3e-34
gi|240167676|ref|ZP_04746335.1|  hypothetical protein MkanA1_0007...   144    5e-33
gi|108797952|ref|YP_638149.1|  hypothetical protein Mmcs_0979 [My...   129    1e-28
gi|119867049|ref|YP_937001.1|  hypothetical protein Mkms_0997 [My...   129    1e-28
gi|120402285|ref|YP_952114.1|  hypothetical protein Mvan_1274 [My...   129    2e-28
gi|315446011|ref|YP_004078890.1|  hypothetical protein Mspyr1_450...   125    2e-27
gi|145225659|ref|YP_001136337.1|  hypothetical protein Mflv_5083 ...   123    1e-26
gi|118472451|ref|YP_885779.1|  hypothetical protein MSMEG_1393 [M...   122    2e-26
gi|296168530|ref|ZP_06850335.1|  conserved hypothetical protein [...   116    1e-24
gi|333989331|ref|YP_004521945.1|  hypothetical protein JDM601_069...   106    1e-21
gi|240171871|ref|ZP_04750530.1|  hypothetical protein MkanA1_2132...   101    4e-20
gi|169630933|ref|YP_001704582.1|  hypothetical protein MAB_3854 [...  86.3    2e-15
gi|183980593|ref|YP_001848884.1|  hypothetical protein MMAR_0565 ...  63.9    7e-09
gi|118619805|ref|YP_908137.1|  hypothetical protein MUL_4742 [Myc...  63.5    1e-08
gi|254777283|ref|ZP_05218799.1|  hypothetical protein MaviaA2_218...  62.0    3e-08
gi|118466590|ref|YP_883970.1|  hypothetical protein MAV_4846 [Myc...  62.0    3e-08
gi|41409900|ref|NP_962736.1|  hypothetical protein MAP3802c [Myco...  61.6    4e-08
gi|120402227|ref|YP_952056.1|  hypothetical protein Mvan_1215 [My...  60.8    7e-08
gi|108797953|ref|YP_638150.1|  hypothetical protein Mmcs_0980 [My...  60.8    7e-08
gi|342859208|ref|ZP_08715862.1|  hypothetical protein MCOL_10028 ...  60.5    8e-08
gi|240173240|ref|ZP_04751898.1|  hypothetical protein MkanA1_2826...  59.7    2e-07
gi|41409950|ref|NP_962786.1|  hypothetical protein MAP3852c [Myco...  58.9    2e-07
gi|336460295|gb|EGO39196.1|  Protein of unknown function (DUF3060...  58.2    4e-07
gi|118464376|ref|YP_883921.1|  hypothetical protein MAV_4794 [Myc...  58.2    4e-07
gi|240167678|ref|ZP_04746337.1|  hypothetical protein MkanA1_0008...  58.2    4e-07
gi|254777231|ref|ZP_05218747.1|  hypothetical protein MaviaA2_215...  57.8    5e-07
gi|333989332|ref|YP_004521946.1|  transmembrane protein [Mycobact...  57.0    9e-07
gi|296167814|ref|ZP_06850000.1|  conserved hypothetical protein [...  56.6    1e-06
gi|183981030|ref|YP_001849321.1|  hypothetical protein MMAR_1009 ...  56.6    1e-06
gi|296167686|ref|ZP_06849932.1|  conserved hypothetical protein [...  56.2    2e-06
gi|306782942|ref|ZP_07421264.1|  conserved membrane protein [Myco...  55.5    2e-06
gi|308377389|ref|ZP_07668501.1|  conserved membrane protein [Myco...  55.5    3e-06
gi|308369363|ref|ZP_07417492.2|  conserved membrane protein [Myco...  55.5    3e-06
gi|15607820|ref|NP_215194.1|  transmembrane protein [Mycobacteriu...  55.5    3e-06
gi|333990177|ref|YP_004522791.1|  hypothetical protein JDM601_153...  55.1    3e-06
gi|118616545|ref|YP_904877.1|  hypothetical protein MUL_0761 [Myc...  54.7    4e-06
gi|315446010|ref|YP_004078889.1|  hypothetical protein Mspyr1_450...  54.7    4e-06
gi|15607455|ref|NP_214828.1|  hypothetical protein Rv0314c [Mycob...  54.7    5e-06


>gi|15607819|ref|NP_215193.1| putative threonine rich protein [Mycobacterium tuberculosis H37Rv]
 gi|15840082|ref|NP_335119.1| hypothetical protein MT0707 [Mycobacterium tuberculosis CDC1551]
 gi|31791863|ref|NP_854356.1| putative threonine rich protein [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 Length=165

 Score =  320 bits (821),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 164/165 (99%), Positives = 165/165 (100%), Gaps = 0/165 (0%)

Query  1    VVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA  60
            +VEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA
Sbjct  1    MVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA  60

Query  61   APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG  120
            APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG
Sbjct  61   APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG  120

Query  121  GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
            GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct  121  GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165


>gi|289744402|ref|ZP_06503780.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289756767|ref|ZP_06516145.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294993056|ref|ZP_06798747.1| hypothetical protein Mtub2_00745 [Mycobacterium tuberculosis 
210]
 gi|289684930|gb|EFD52418.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289712331|gb|EFD76343.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326905099|gb|EGE52032.1| conserved threonine rich protein [Mycobacterium tuberculosis 
W-148]
Length=165

 Score =  318 bits (816),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 163/165 (99%), Positives = 164/165 (99%), Gaps = 0/165 (0%)

Query  1    VVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA  60
            +VEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA
Sbjct  1    MVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA  60

Query  61   APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG  120
            APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG
Sbjct  61   APTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVG  120

Query  121  GANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
            GANNKIAFDRIDERLVVVGLD TVTYKNGDPTIDNLGAGNRINKE
Sbjct  121  GANNKIAFDRIDERLVVVGLDKTVTYKNGDPTIDNLGAGNRINKE  165


>gi|289568620|ref|ZP_06448847.1| conserved threonine rich protein [Mycobacterium tuberculosis 
T17]
 gi|289542374|gb|EFD46022.1| conserved threonine rich protein [Mycobacterium tuberculosis 
T17]
Length=167

 Score =  263 bits (671),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 142/166 (86%), Positives = 144/166 (87%), Gaps = 10/166 (6%)

Query  10   RATHSRLATFALA------LAAAALP----LAGCSSTANPPAATTTPATATTTTATSGPT  59
            R + +R A  AL       L    LP      GCSSTANPPAATTTPATATTTTATSGPT
Sbjct  2    RWSRNRCAPIALPTPGWRPLLWRWLPQRCRWPGCSSTANPPAATTTPATATTTTATSGPT  61

Query  60   AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV  119
            AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV
Sbjct  62   AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV  121

Query  120  GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
            GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct  122  GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  167


>gi|340625698|ref|YP_004744150.1| hypothetical protein MCAN_06801 [Mycobacterium canettii CIPT 
140010059]
 gi|340003888|emb|CCC43020.1| conserved hypothetical threonine rich protein [Mycobacterium 
canettii CIPT 140010059]
Length=166

 Score =  229 bits (585),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 155/166 (94%), Positives = 158/166 (96%), Gaps = 1/166 (0%)

Query  1    VVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTA  60
            +VEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPAT TTTT  +    
Sbjct  1    MVEKPLRADRATHSRLATFALALAAAALPLAGCSSTANPPAATTTPATPTTTTTATSGPT  60

Query  61   A-PTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV  119
            A PTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGS+NTLTVNGTCETVTV
Sbjct  61   AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSNNTLTVNGTCETVTV  120

Query  120  GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
            GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct  121  GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  166


>gi|254231000|ref|ZP_04924327.1| conserved hypothetical threonine rich protein [Mycobacterium 
tuberculosis C]
 gi|124600059|gb|EAY59069.1| conserved hypothetical threonine rich protein [Mycobacterium 
tuberculosis C]
Length=102

 Score =  203 bits (516),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 101/102 (99%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

Query  64   VTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN  123
            +TTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN
Sbjct  1    MTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN  60

Query  124  NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
            NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE
Sbjct  61   NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  102


>gi|339293710|gb|AEJ45821.1| conserved threonine rich protein [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297349|gb|AEJ49459.1| conserved threonine rich protein [Mycobacterium tuberculosis 
CCDC5180]
Length=102

 Score =  201 bits (510),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 100/102 (99%), Positives = 101/102 (99%), Gaps = 0/102 (0%)

Query  64   VTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN  123
            +TTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN
Sbjct  1    MTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGAN  60

Query  124  NKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
            NKIAFDRIDERLVVVGLD TVTYKNGDPTIDNLGAGNRINKE
Sbjct  61   NKIAFDRIDERLVVVGLDKTVTYKNGDPTIDNLGAGNRINKE  102


>gi|183981029|ref|YP_001849320.1| hypothetical protein MMAR_1008 [Mycobacterium marinum M]
 gi|183174355|gb|ACC39465.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=158

 Score =  175 bits (444),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 94/137 (69%), Positives = 113/137 (83%), Gaps = 3/137 (2%)

Query  28   LPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGT  87
            L LAGCS TA+PP  ++T  +AT    TSGPTAAPT + G +TTASI+IG+ML YGSIGT
Sbjct  24   LGLAGCSETASPPGPSSTSGSAT---PTSGPTAAPTTSGGPTTTASIEIGNMLNYGSIGT  80

Query  88   TATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYK  147
            TATLDCADGKSLNVAGS+N LTV GTC TVT+GG NNKI FD+ID+RL V+G+DNT+TYK
Sbjct  81   TATLDCADGKSLNVAGSENNLTVTGTCATVTIGGTNNKITFDKIDQRLTVLGIDNTITYK  140

Query  148  NGDPTIDNLGAGNRINK  164
             G+P +DN+G+GN I K
Sbjct  141  AGEPKVDNIGSGNNIEK  157


>gi|254822765|ref|ZP_05227766.1| hypothetical protein MintA_22739 [Mycobacterium intracellulare 
ATCC 13950]
Length=150

 Score =  172 bits (435),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 92/150 (62%), Positives = 120/150 (80%), Gaps = 3/150 (2%)

Query  16   LATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTV-TTGESTTASI  74
            + TFALA AAA L LAGCSSTANPPA ++T  T ++ T ++G  AAPT  ++G STTAS+
Sbjct  1    MHTFALAPAAAILVLAGCSSTANPPAGSSTTTTKSSPTTSAG--AAPTTGSSGASTTASL  58

Query  75   QIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDER  134
            +IG+ + YGS+GTT  LDCA GKSLNVAGSDNTLTV G+C TV +GG NNKI  D++++R
Sbjct  59   EIGNTVNYGSMGTTTNLDCATGKSLNVAGSDNTLTVTGSCSTVNIGGTNNKITLDKVEKR  118

Query  135  LVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            + V+G++NT+TYK+GDP +DNLG+ N INK
Sbjct  119  ITVLGMNNTITYKDGDPKVDNLGSDNTINK  148


>gi|342858836|ref|ZP_08715490.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT 
3035]
 gi|342133077|gb|EGT86280.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT 
3035]
Length=161

 Score =  172 bits (435),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 93/151 (62%), Positives = 117/151 (78%), Gaps = 3/151 (1%)

Query  15   RLATFALALAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTV-TTGESTTAS  73
            RLA  A+  AAAAL LAGCSSTANPPA ++T  T ++ T ++G  AAPT  ++G STTAS
Sbjct  11   RLAVLAMTPAAAALVLAGCSSTANPPAGSSTTTTKSSATTSAG--AAPTTGSSGASTTAS  68

Query  74   IQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDE  133
            I+IG+ + YGS+GTT TLDCA GKSLNV GSDN LTV GTCET TV G NNKI FD+++ 
Sbjct  69   IEIGNTINYGSMGTTTTLDCASGKSLNVGGSDNNLTVTGTCETATVSGTNNKITFDKVNT  128

Query  134  RLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            R+ V+G++NT+TYK+GDP +D +G  N INK
Sbjct  129  RITVLGMNNTITYKDGDPKVDKIGQSNTINK  159


>gi|118616544|ref|YP_904876.1| hypothetical protein MUL_0760 [Mycobacterium ulcerans Agy99]
 gi|118568654|gb|ABL03405.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=129

 Score =  164 bits (414),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 82/124 (67%), Positives = 100/124 (81%), Gaps = 0/124 (0%)

Query  39   PPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKS  98
            PP      +T+ + T TSGPTAAP+ + G +TTASI+IG+ML YGSIGTTATLD ADGKS
Sbjct  3    PPVPPGPSSTSGSATPTSGPTAAPSTSGGPTTTASIEIGNMLNYGSIGTTATLDRADGKS  62

Query  99   LNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGA  158
            LNVAGS N LTV GTC TVT+GG NNKI FD+ID+RL V+G+DNT+TYK G+P +DN+G+
Sbjct  63   LNVAGSGNNLTVTGTCATVTIGGTNNKITFDKIDQRLTVLGIDNTITYKAGEPKVDNIGS  122

Query  159  GNRI  162
            GN I
Sbjct  123  GNNI  126


>gi|118465299|ref|YP_883630.1| hypothetical protein MAV_4496 [Mycobacterium avium 104]
 gi|118166586|gb|ABK67483.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=144

 Score =  152 bits (385),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 83/134 (62%), Positives = 105/134 (79%), Gaps = 3/134 (2%)

Query  32   GCSSTANPPAATTTPATATTTTATSGPTAAPTVTTG-ESTTASIQIGDMLTYGSIGTTAT  90
            GCSSTANPPA ++T  T +T T ++G  AAPT  +G  STTASI+IG+ + YGS+GTT T
Sbjct  11   GCSSTANPPAGSSTTTTKSTATTSAG--AAPTTGSGGASTTASIEIGNTINYGSMGTTTT  68

Query  91   LDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGD  150
            LDCA GKSLNV GSDNTLTV GTCE+ TV G NNKI FD+++ R+ V+G++NT+TYK+GD
Sbjct  69   LDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDGD  128

Query  151  PTIDNLGAGNRINK  164
            P +D +G  N INK
Sbjct  129  PKVDKIGQSNTINK  142


>gi|41410235|ref|NP_963071.1| hypothetical protein MAP4137c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254776931|ref|ZP_05218447.1| hypothetical protein MaviaA2_20001 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41399069|gb|AAS06687.1| hypothetical protein MAP_4137c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=161

 Score =  152 bits (384),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 83/134 (62%), Positives = 105/134 (79%), Gaps = 3/134 (2%)

Query  32   GCSSTANPPAATTTPATATTTTATSGPTAAPTVTTG-ESTTASIQIGDMLTYGSIGTTAT  90
            GCSSTANPPA ++T  T +T T ++G  AAPT  +G  STTASI+IG+ + YGS+GTT T
Sbjct  28   GCSSTANPPAGSSTTTTKSTATTSAG--AAPTTGSGGASTTASIEIGNTINYGSMGTTTT  85

Query  91   LDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGD  150
            LDCA GKSLNV GSDNTLTV GTCE+ TV G NNKI FD+++ R+ V+G++NT+TYK+GD
Sbjct  86   LDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDGD  145

Query  151  PTIDNLGAGNRINK  164
            P +D +G  N INK
Sbjct  146  PKVDKIGQSNTINK  159


>gi|336460543|gb|EGO39436.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=160

 Score =  148 bits (373),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 83/134 (62%), Positives = 105/134 (79%), Gaps = 4/134 (2%)

Query  32   GCSSTANPPAATTTPATATTTTATSGPTAAPTVTTG-ESTTASIQIGDMLTYGSIGTTAT  90
            GCSSTANPPA ++T  T +T T ++G  AAPT  +G  STTASI+IG+ + YGS+GTT T
Sbjct  28   GCSSTANPPAGSSTTTTKSTATTSAG--AAPTTGSGGASTTASIEIGNTINYGSMGTT-T  84

Query  91   LDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGD  150
            LDCA GKSLNV GSDNTLTV GTCE+ TV G NNKI FD+++ R+ V+G++NT+TYK+GD
Sbjct  85   LDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDGD  144

Query  151  PTIDNLGAGNRINK  164
            P +D +G  N INK
Sbjct  145  PKVDKIGQSNTINK  158


>gi|240167676|ref|ZP_04746335.1| hypothetical protein MkanA1_00070 [Mycobacterium kansasii ATCC 
12478]
Length=88

 Score =  144 bits (362),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 67/86 (78%), Positives = 78/86 (91%), Gaps = 0/86 (0%)

Query  79   MLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVV  138
            ML YGSIGTTATLDCADGKSLNVAGS+NTLTVNGTC TVT+GG NNKI FD+ID+ L V+
Sbjct  1    MLNYGSIGTTATLDCADGKSLNVAGSENTLTVNGTCSTVTIGGTNNKITFDKIDQHLSVL  60

Query  139  GLDNTVTYKNGDPTIDNLGAGNRINK  164
            GL+NT+TYK+GDP +DN+G+GN INK
Sbjct  61   GLNNTITYKDGDPKVDNIGSGNTINK  86


>gi|108797952|ref|YP_638149.1| hypothetical protein Mmcs_0979 [Mycobacterium sp. MCS]
 gi|108768371|gb|ABG07093.1| conserved hypothetical protein [Mycobacterium sp. MCS]
Length=136

 Score =  129 bits (325),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 61/110 (56%), Positives = 85/110 (78%), Gaps = 1/110 (0%)

Query  56   SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE  115
            S  T  PT T G S+ A ++IG+ + YGS+GTTA +DCADGK+LNV GS+N LTV GTC 
Sbjct  27   SSDTNTPTATAG-SSGAQVEIGNTINYGSVGTTAEVDCADGKALNVGGSNNKLTVTGTCA  85

Query  116  TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
             V +GG +N I+F+R+D+ + VVGL+NT+TY++GDP ID+LG+ N+I K+
Sbjct  86   NVNIGGTDNTISFERVDKEITVVGLNNTITYRDGDPKIDDLGSNNKITKQ  135


>gi|119867049|ref|YP_937001.1| hypothetical protein Mkms_0997 [Mycobacterium sp. KMS]
 gi|126433615|ref|YP_001069306.1| hypothetical protein Mjls_1007 [Mycobacterium sp. JLS]
 gi|119693138|gb|ABL90211.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126233415|gb|ABN96815.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=141

 Score =  129 bits (325),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 61/110 (56%), Positives = 85/110 (78%), Gaps = 1/110 (0%)

Query  56   SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE  115
            S  T  PT T G S+ A ++IG+ + YGS+GTTA +DCADGK+LNV GS+N LTV GTC 
Sbjct  32   SSDTNTPTATAG-SSGAQVEIGNTINYGSVGTTAEVDCADGKALNVGGSNNKLTVTGTCA  90

Query  116  TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINKE  165
             V +GG +N I+F+R+D+ + VVGL+NT+TY++GDP ID+LG+ N+I K+
Sbjct  91   NVNIGGTDNTISFERVDKEITVVGLNNTITYRDGDPKIDDLGSNNKITKQ  140


>gi|120402285|ref|YP_952114.1| hypothetical protein Mvan_1274 [Mycobacterium vanbaalenii PYR-1]
 gi|119955103|gb|ABM12108.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=133

 Score =  129 bits (323),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 64/111 (58%), Positives = 86/111 (78%), Gaps = 1/111 (0%)

Query  54   ATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGT  113
            +TS  T +PT T G S  A ++IG+ + YGS GTTA +DCADGKSLNV GS+NTLTV GT
Sbjct  23   STSDDTNSPTATAGTSG-AQVEIGNTINYGSFGTTADIDCADGKSLNVGGSNNTLTVKGT  81

Query  114  CETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            C  V +GGA+NKI+F+R+D  L VVGL+NTVTY++GDP +++ G+ N I++
Sbjct  82   CANVNIGGADNKISFERVDAELSVVGLNNTVTYRDGDPKVNDTGSNNSISR  132


>gi|315446011|ref|YP_004078890.1| hypothetical protein Mspyr1_45010 [Mycobacterium sp. Spyr1]
 gi|315264314|gb|ADU01056.1| hypothetical protein Mspyr1_45010 [Mycobacterium sp. Spyr1]
Length=125

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 90/142 (64%), Gaps = 22/142 (15%)

Query  23   LAAAALPLAGCSSTANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTY  82
            L AAA+ LAGCS                      G    PTVT G S  A I+IG+ + Y
Sbjct  5    LGAAAVTLAGCSF---------------------GGGDDPTVTAGTSG-AQIEIGNTINY  42

Query  83   GSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDN  142
            GS GTTA +DCADGKS+NV GS+NTLTV GTC    +GGA+NKI F+R++  L VVGL+N
Sbjct  43   GSFGTTAEIDCADGKSVNVGGSNNTLTVKGTCAKANIGGADNKIDFERVETELSVVGLNN  102

Query  143  TVTYKNGDPTIDNLGAGNRINK  164
            TVTY++GDP +++ G+ N I K
Sbjct  103  TVTYRDGDPQVNDTGSNNTITK  124


>gi|145225659|ref|YP_001136337.1| hypothetical protein Mflv_5083 [Mycobacterium gilvum PYR-GCK]
 gi|145218145|gb|ABP47549.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=132

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 62/109 (57%), Positives = 81/109 (75%), Gaps = 1/109 (0%)

Query  56   SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE  115
            SG    PTVT G S  A ++IG+ + YGS GTTA +DCADGKS+NV GS+NTLTV GTC 
Sbjct  24   SGDGDNPTVTAGTSG-AQVEIGNTINYGSFGTTAEIDCADGKSVNVGGSNNTLTVKGTCA  82

Query  116  TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
               +GGA+NKI F+R++  L VVGL+NTVTY++GDP +++ G+ N I K
Sbjct  83   KANIGGADNKIDFERVETELSVVGLNNTVTYRDGDPQVNDTGSNNTITK  131


>gi|118472451|ref|YP_885779.1| hypothetical protein MSMEG_1393 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173738|gb|ABK74634.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=136

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 59/109 (55%), Positives = 84/109 (78%), Gaps = 1/109 (0%)

Query  56   SGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCE  115
            S  T  P+ T G S+  +++IG+ + Y S+GTTA +DCADGKSL V G++NTLTV GTC 
Sbjct  28   SSDTNTPSATAG-SSGVNVEIGNTINYMSVGTTADIDCADGKSLTVGGANNTLTVKGTCA  86

Query  116  TVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             V +GG++NKI F++ID+ L VVGL+NT+TY++GDP I+N G+GN ++K
Sbjct  87   NVNIGGSDNKITFEKIDKDLTVVGLNNTITYRDGDPKINNTGSGNSVSK  135


>gi|296168530|ref|ZP_06850335.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896672|gb|EFG76310.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=82

 Score =  116 bits (290),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 55/80 (69%), Positives = 67/80 (84%), Gaps = 0/80 (0%)

Query  85   IGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTV  144
            +GTT TLDCA GKSLNV GSDNTLTV G C T+TVGG NNKI  D++D R+ VVGL+NT+
Sbjct  1    MGTTTTLDCASGKSLNVGGSDNTLTVTGDCATLTVGGTNNKITLDKVDTRISVVGLNNTI  60

Query  145  TYKNGDPTIDNLGAGNRINK  164
            TYK+G+P +DNLG+GN I+K
Sbjct  61   TYKDGEPKVDNLGSGNTISK  80


>gi|333989331|ref|YP_004521945.1| hypothetical protein JDM601_0691 [Mycobacterium sp. JDM601]
 gi|333485299|gb|AEF34691.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=134

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 48/85 (57%), Positives = 65/85 (77%), Gaps = 0/85 (0%)

Query  78   DMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVV  137
            D + YGS GTT+ +DCADGKSLNVAGS+N LTV G CE V V GA+N+I  +R+D+ L +
Sbjct  46   DTIDYGSFGTTSAVDCADGKSLNVAGSNNRLTVRGRCEAVNVAGADNRITVERVDKSLTI  105

Query  138  VGLDNTVTYKNGDPTIDNLGAGNRI  162
             GL+N+V Y+ G+P +D+ G+GN I
Sbjct  106  TGLNNSVAYRAGEPRVDDRGSGNTI  130


>gi|240171871|ref|ZP_04750530.1| hypothetical protein MkanA1_21325 [Mycobacterium kansasii ATCC 
12478]
Length=128

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 48/90 (54%), Positives = 65/90 (73%), Gaps = 0/90 (0%)

Query  75   QIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDER  134
            ++ + +  G+ G T TLDCA GKSLN+ GS NTLTV G C  V +GG +NKI+F+ I+  
Sbjct  38   EMNNTINDGTFGKTETLDCAGGKSLNIGGSKNTLTVKGRCAKVIIGGDDNKISFENIETE  97

Query  135  LVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            L V GL+NTVTY++GDP++ +LG GN I K
Sbjct  98   LTVAGLNNTVTYRDGDPSVADLGTGNSITK  127


>gi|169630933|ref|YP_001704582.1| hypothetical protein MAB_3854 [Mycobacterium abscessus ATCC 19977]
 gi|169242900|emb|CAM63928.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=153

 Score = 86.3 bits (212),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 41/91 (46%), Positives = 55/91 (61%), Gaps = 0/91 (0%)

Query  74   IQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDE  133
            + IGD    G  G T T  C  GKSLN+ G++NTLT+ G CETVTV G +N + F  +  
Sbjct  61   VNIGDETVIGYFGQTTTATCEAGKSLNITGANNTLTITGPCETVTVSGFSNTVTFGELKT  120

Query  134  RLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             + V G  N +TYK G+P ++N G+ N I K
Sbjct  121  EVTVTGYGNKLTYKTGEPKVNNYGSNNTIQK  151


>gi|183980593|ref|YP_001848884.1| hypothetical protein MMAR_0565 [Mycobacterium marinum M]
 gi|183173919|gb|ACC39029.1| conserved membrane protein [Mycobacterium marinum M]
Length=239

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 37/102 (37%), Positives = 57/102 (56%), Gaps = 2/102 (1%)

Query  63   TVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGA  122
            T T G ST+A    G  ++   +  + T+ C D   +NV+G  NT+T+ G C +V+V G 
Sbjct  139  TPTAGPSTSAGPPAGSTISVVGVNQSQTITCND-NIVNVSGMSNTVTITGHCASVSVSGL  197

Query  123  NNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             N +  +  D R+   GL+N VTY++G P I   G+GN I +
Sbjct  198  QNTVTVETAD-RITASGLNNKVTYQSGSPKISKSGSGNVIEQ  238


>gi|118619805|ref|YP_908137.1| hypothetical protein MUL_4742 [Mycobacterium ulcerans Agy99]
 gi|118571915|gb|ABL06666.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=242

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 37/102 (37%), Positives = 57/102 (56%), Gaps = 2/102 (1%)

Query  63   TVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGA  122
            T T G ST+A    G  ++   +  + T+ C D   +NV+G  NT+T+ G C +V+V G 
Sbjct  142  TPTAGPSTSAGPPAGSTISVVGVNQSQTITCND-NIVNVSGMSNTVTITGHCASVSVSGL  200

Query  123  NNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             N +  +  D R+   GL+N VTY++G P I   G+GN I +
Sbjct  201  QNTVTVETAD-RITASGLNNKVTYQSGSPKISKSGSGNVIEQ  241


>gi|254777283|ref|ZP_05218799.1| hypothetical protein MaviaA2_21801 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=220

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 50/165 (31%), Positives = 74/165 (45%), Gaps = 32/165 (19%)

Query  16   LATFALALAA-----AALPLAGCSSTAN-----------PPAATTTPATATTTTATSGPT  59
            +A   LALA      AA  L+G  S  N           PP  +TTPA +T+    + P 
Sbjct  71   IAVGVLALAGGIAAFAAHQLSGVKSIINSPPTISRTFGPPPGISTTPAPSTSRRTPTSPA  130

Query  60   AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV  119
            A P              G  L+   I    TL C D   ++V+G  NT+ + G C +++V
Sbjct  131  APP--------------GTELSVAGINENRTLAC-DDNPVSVSGVSNTVVITGHCTSLSV  175

Query  120  GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             G  N +  + + ER+   G +N VTY +G P+I N G  N + +
Sbjct  176  SGVQNTVTVEAV-ERIDASGFNNKVTYHSGTPSISNSGGSNVVGR  219


>gi|118466590|ref|YP_883970.1| hypothetical protein MAV_4846 [Mycobacterium avium 104]
 gi|118167877|gb|ABK68774.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=220

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 50/165 (31%), Positives = 74/165 (45%), Gaps = 32/165 (19%)

Query  16   LATFALALAA-----AALPLAGCSSTAN-----------PPAATTTPATATTTTATSGPT  59
            +A   LALA      AA  L+G  S  N           PP  +TTPA +T+    + P 
Sbjct  71   IAVGVLALAGGIAAFAAHQLSGVKSIINSPPTISRTFGPPPGISTTPAPSTSRRTPTSPA  130

Query  60   AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV  119
            A P              G  L+   I    TL C D   ++V+G  NT+ + G C +++V
Sbjct  131  APP--------------GTELSVAGINENRTLAC-DDNPVSVSGVSNTVVITGHCTSLSV  175

Query  120  GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             G  N +  + + ER+   G +N VTY +G P+I N G  N + +
Sbjct  176  SGVQNTVTVEAV-ERIGASGFNNKVTYHSGTPSISNSGGSNVVGR  219


>gi|41409900|ref|NP_962736.1| hypothetical protein MAP3802c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398733|gb|AAS06352.1| hypothetical protein MAP_3802c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336460237|gb|EGO39140.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=220

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 50/165 (31%), Positives = 74/165 (45%), Gaps = 32/165 (19%)

Query  16   LATFALAL-----AAAALPLAGCSSTAN-----------PPAATTTPATATTTTATSGPT  59
            +A   LAL     A AA  L+G  S  N           PP  +TTPA +T+    + P 
Sbjct  71   IAVGVLALTGGIAAFAAHQLSGVKSIINSPPTISRTFGPPPGISTTPAPSTSRRTPTSPA  130

Query  60   AAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTV  119
            A P              G  L+   I    TL C D   ++V+G  NT+ + G C +++V
Sbjct  131  APP--------------GTELSVAGINENRTLAC-DDNPVSVSGVSNTVVITGHCTSLSV  175

Query  120  GGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             G  N +  + + ER+   G +N VTY +G P+I N G  N + +
Sbjct  176  SGVQNTVTVEAV-ERIDASGFNNKVTYHSGTPSISNSGGSNVVGR  219


>gi|120402227|ref|YP_952056.1| hypothetical protein Mvan_1215 [Mycobacterium vanbaalenii PYR-1]
 gi|119955045|gb|ABM12050.1| putative conserved membrane protein [Mycobacterium vanbaalenii 
PYR-1]
Length=233

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 41/130 (32%), Positives = 62/130 (48%), Gaps = 4/130 (3%)

Query  36   TANPPAATTTPATATTTTATSGPTAAPTVTTGESTT--ASIQIGDMLTYGSIGTTATLDC  93
            T +P +AT  P    +             T  EST    +++ G  ++ G + T  T+ C
Sbjct  104  TGSPDSATPIPVPPISGGGGPLDPPPSVQTRIESTEQIVTVESGGFVSLGGVETRQTVVC  163

Query  94   ADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTI  153
             DG ++N++G +NT+ V G C  VTV G  N +  +  D  +   G DN VTY+ G P I
Sbjct  164  DDG-TVNISGVNNTIEVQGACTMVTVSGVENTVTVESAD-TISASGFDNRVTYRTGTPEI  221

Query  154  DNLGAGNRIN  163
               G GN + 
Sbjct  222  SKSGRGNVVE  231


>gi|108797953|ref|YP_638150.1| hypothetical protein Mmcs_0980 [Mycobacterium sp. MCS]
 gi|119867050|ref|YP_937002.1| hypothetical protein Mkms_0998 [Mycobacterium sp. KMS]
 gi|126433616|ref|YP_001069307.1| hypothetical protein Mjls_1008 [Mycobacterium sp. JLS]
 gi|108768372|gb|ABG07094.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
 gi|119693139|gb|ABL90212.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
 gi|126233416|gb|ABN96816.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=125

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 35/83 (43%), Positives = 47/83 (57%), Gaps = 5/83 (6%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            G + T+DC D   L+V G+ N +   GTC  VT+ G+ N +  D +   + V G D TV 
Sbjct  41   GLSQTIDCRD-SVLHVNGNGNQVYALGTCYAVTMQGSGNLVVADNVINDITVYGWDQTVM  99

Query  146  YKNGDPTIDN----LGAGNRINK  164
            YKNGDP I +    LG  NRIN+
Sbjct  100  YKNGDPIIWDRGRELGMTNRINR  122


>gi|342859208|ref|ZP_08715862.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT 
3035]
 gi|342133449|gb|EGT86652.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT 
3035]
Length=227

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 39/131 (30%), Positives = 62/131 (48%), Gaps = 12/131 (9%)

Query  34   SSTANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDC  93
            S T++PP+ +T P   T    +  P+ +P    G            L+   I    T+ C
Sbjct  108  SKTSSPPSISTNPGLTTPRRRSPSPSTSPAAPPGTE----------LSVAGINENRTITC  157

Query  94   ADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTI  153
             D   ++V+G  NT+T+ G C +++V G  N I  + +D  +   G DN VTY +G P I
Sbjct  158  ND-NIVSVSGVSNTVTITGHCTSLSVSGVQNSITVEAVDS-IEASGFDNKVTYHSGAPKI  215

Query  154  DNLGAGNRINK  164
             N G  N + +
Sbjct  216  SNSGGSNVVQQ  226


>gi|240173240|ref|ZP_04751898.1| hypothetical protein MkanA1_28266 [Mycobacterium kansasii ATCC 
12478]
Length=244

 Score = 59.7 bits (143),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 37/128 (29%), Positives = 62/128 (49%), Gaps = 12/128 (9%)

Query  37   ANPPAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADG  96
            +NP      P+ + T T T+GP  +P    G +          L+   +    TLDC D 
Sbjct  128  SNPSGTVPPPSGSKTQTPTAGPATSPAPPPGGN----------LSVSGLNENKTLDCND-  176

Query  97   KSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNL  156
              + ++G  NT+ + G C ++TV G  N +  D +D  +   G++N VTY +G P +   
Sbjct  177  SVVEISGMSNTVVITGHCASLTVSGIENTVTVDAVD-TIEASGINNKVTYHSGSPKVSKS  235

Query  157  GAGNRINK  164
            G+GN + +
Sbjct  236  GSGNVVQQ  243


>gi|41409950|ref|NP_962786.1| hypothetical protein MAP3852c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398783|gb|AAS06402.1| hypothetical protein MAP_3852c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=195

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 46/79 (59%), Gaps = 2/79 (2%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            GTT +L C  G  L+V+G DNT+T+ G C +V+V G  N+IA D  D  +   G  N V 
Sbjct  118  GTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAGAGNVVV  175

Query  146  YKNGDPTIDNLGAGNRINK  164
            Y  G P + N G+GN + +
Sbjct  176  YHWGSPKVVNAGSGNVVRQ  194


>gi|336460295|gb|EGO39196.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=164

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 46/79 (59%), Gaps = 2/79 (2%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            GTT +L C  G  L+V+G DNT+T+ G C +V+V G  N+IA D  D  +   G  N V 
Sbjct  87   GTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAGAGNVVV  144

Query  146  YKNGDPTIDNLGAGNRINK  164
            Y  G P + N G+GN + +
Sbjct  145  YHWGSPKVVNAGSGNVVRQ  163


>gi|118464376|ref|YP_883921.1| hypothetical protein MAV_4794 [Mycobacterium avium 104]
 gi|118165663|gb|ABK66560.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=164

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (56%), Gaps = 2/85 (2%)

Query  80   LTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVG  139
            L     GTT +L C  G  L+V+G DNT+T+ G C +V+V G  N+IA D  D  +   G
Sbjct  81   LQVSGAGTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAG  138

Query  140  LDNTVTYKNGDPTIDNLGAGNRINK  164
              N V Y  G P + N G+GN + +
Sbjct  139  AGNVVVYHWGSPKVVNAGSGNVVRQ  163


>gi|240167678|ref|ZP_04746337.1| hypothetical protein MkanA1_00080 [Mycobacterium kansasii ATCC 
12478]
Length=128

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 46/83 (56%), Gaps = 5/83 (6%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            G    LDC D  +L V G+ N +T  GTC  VTV G++N +  D +   + V G D TV 
Sbjct  44   GLEQVLDCND-STLLVNGTANIITAKGTCWAVTVMGSSNTVVADTVINDITVYGWDQTVF  102

Query  146  YKNGDPTIDN----LGAGNRINK  164
            +KNGDP I +    LG  NR+ +
Sbjct  103  FKNGDPFIWDRGRELGMVNRLQR  125


>gi|254777231|ref|ZP_05218747.1| hypothetical protein MaviaA2_21539 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=156

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 46/79 (59%), Gaps = 2/79 (2%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            GTT +L C  G  L+V+G DNT+T+ G C +V+V G  N+IA D  D  +   G  N V 
Sbjct  79   GTTKSLPCHAGY-LSVSGKDNTVTLTGHCTSVSVSGNGNRIAVDSSDA-VSAAGAGNVVV  136

Query  146  YKNGDPTIDNLGAGNRINK  164
            Y  G P + N G+GN + +
Sbjct  137  YHWGSPKVVNAGSGNVVRQ  155


>gi|333989332|ref|YP_004521946.1| transmembrane protein [Mycobacterium sp. JDM601]
 gi|333485300|gb|AEF34692.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=125

 Score = 57.0 bits (136),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 35/92 (39%), Positives = 50/92 (55%), Gaps = 6/92 (6%)

Query  77   GDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLV  136
            GD   YG +  T TLDC +G +L + G +NT+   G C  VT+ G+ N +  + I   + 
Sbjct  33   GDTHVYG-VHETRTLDC-NGGTLFINGVNNTVHAMGNCWAVTLQGSQNTVIAETIINDVT  90

Query  137  VVGLDNTVTYKNGDPTIDN----LGAGNRINK  164
            V G D TV Y NGDP + +    LG  NR+ +
Sbjct  91   VYGYDQTVYYHNGDPLLFDRGRELGMTNRLQR  122


>gi|296167814|ref|ZP_06850000.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897044|gb|EFG76664.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=174

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 45/79 (57%), Gaps = 2/79 (2%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            GTT T+ C  G  L+V+G  NT+TV G C +VTV G +N++A D  D  +   G  N VT
Sbjct  97   GTTKTVGC-HGGYLSVSGQANTVTVTGHCTSVTVSGHDNRVAVDSADA-VSTSGTSNAVT  154

Query  146  YKNGDPTIDNLGAGNRINK  164
            Y  G P + N G  N + +
Sbjct  155  YHWGSPNVANAGTANTVKQ  173


>gi|183981030|ref|YP_001849321.1| hypothetical protein MMAR_1009 [Mycobacterium marinum M]
 gi|183174356|gb|ACC39466.1| conserved hypothetical transmembrane protein [Mycobacterium marinum 
M]
Length=125

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 33/83 (40%), Positives = 45/83 (55%), Gaps = 5/83 (6%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            G   TLDC D  +L V G+ N +T  GTC  VTV G++N +  D +   +   G D TV 
Sbjct  41   GIVRTLDCND-STLFVNGTGNIITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVF  99

Query  146  YKNGDPTIDN----LGAGNRINK  164
            + NGDP I +    LG  NR+ +
Sbjct  100  FHNGDPFIWDRGRELGMVNRLQR  122


>gi|296167686|ref|ZP_06849932.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897099|gb|EFG76712.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=230

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 49/155 (32%), Positives = 73/155 (48%), Gaps = 8/155 (5%)

Query  16   LATFALALAA-----AALPLAGCSST-ANPPAATTTPATATTTTATSGPTAAPTVTTGES  69
            +A   LALA      AA  L+G  S  ++PP  T T +    T  ++        +T  S
Sbjct  77   IAVGVLALAGGIAAFAAHQLSGVRSIISSPPTFTNTFSPPGGTVPSTTTRTRTPRSTTTS  136

Query  70   TTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFD  129
            T+ +   G  +T   +G   T  C D   +NV G  NT+ ++G C  + V G  N I  D
Sbjct  137  TSPTPPPGSQVTISGMGENRTFACND-NVVNVTGVSNTVVISGHCANLAVSGVQNDITVD  195

Query  130  RIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
             +D  + V GL N VTY +G P + N G+ N + +
Sbjct  196  AVDS-IDVSGLSNKVTYHSGTPKVSNTGSANVVER  229


>gi|306782942|ref|ZP_07421264.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306787310|ref|ZP_07425632.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306791863|ref|ZP_07430165.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 7 more sequence titles
 Length=220

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 35/117 (30%), Positives = 56/117 (48%), Gaps = 9/117 (7%)

Query  48   TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT  107
            T + + A   PTA P  T   +       G  L+   +    T+ C D  +++V+G  NT
Sbjct  112  TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACND-STVSVSGMSNT  163

Query  108  LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            + + G C ++TV G  N +  D +D  +   G +N VTY +G P I N G  N + +
Sbjct  164  VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ  219


>gi|308377389|ref|ZP_07668501.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308355951|gb|EFP44802.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
Length=283

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 35/117 (30%), Positives = 56/117 (48%), Gaps = 9/117 (7%)

Query  48   TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT  107
            T + + A   PTA P  T   +       G  L+   +    T+ C D  +++V+G  NT
Sbjct  175  TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACND-STVSVSGMSNT  226

Query  108  LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            + + G C ++TV G  N +  D +D  +   G +N VTY +G P I N G  N + +
Sbjct  227  VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ  282


>gi|308369363|ref|ZP_07417492.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308375123|ref|ZP_07442788.2| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308327865|gb|EFP16716.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308347376|gb|EFP36227.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
Length=217

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 35/117 (30%), Positives = 56/117 (48%), Gaps = 9/117 (7%)

Query  48   TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT  107
            T + + A   PTA P  T   +       G  L+   +    T+ C D  +++V+G  NT
Sbjct  109  TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACND-STVSVSGMSNT  160

Query  108  LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            + + G C ++TV G  N +  D +D  +   G +N VTY +G P I N G  N + +
Sbjct  161  VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ  216


>gi|15607820|ref|NP_215194.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15840083|ref|NP_335120.1| hypothetical protein MT0708 [Mycobacterium tuberculosis CDC1551]
 gi|31791864|ref|NP_854357.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=124

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)

Query  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145
            G   TLDC +  +L V G+ N +T  GTC  VTV G++N +  D I   + V G D TV 
Sbjct  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99

Query  146  YKNGDPTIDN----LGAGNRINK  164
            ++NGDP I +    LG  NR+ +
Sbjct  100  FRNGDPFIWDRGRELGMVNRLQR  122


>gi|333990177|ref|YP_004522791.1| hypothetical protein JDM601_1537 [Mycobacterium sp. JDM601]
 gi|333486145|gb|AEF35537.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=199

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 42/125 (34%), Positives = 59/125 (48%), Gaps = 4/125 (3%)

Query  40   PAATTTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSL  99
            P   T P+TA  T + S P   P   +  + T      D +T    G   TL CA G  +
Sbjct  78   PGFPTVPSTAAPTPSRSVPVVPPASASPANPTPGR--ADTITVSGAGQDKTLACA-GNQV  134

Query  100  NVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAG  159
            +V+G  NT+T+ G C  +TV G  N I  D     +   G+DN VTY+ GDP +   G  
Sbjct  135  SVSGVRNTITLTGRCAGLTVSGIGNVITVD-FTPAITTSGVDNRVTYRFGDPEVSTSGFD  193

Query  160  NRINK  164
            N + +
Sbjct  194  NVVVR  198


>gi|118616545|ref|YP_904877.1| hypothetical protein MUL_0761 [Mycobacterium ulcerans Agy99]
 gi|118568655|gb|ABL03406.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans 
Agy99]
Length=125

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 44/125 (36%), Positives = 63/125 (51%), Gaps = 10/125 (8%)

Query  44   TTPATATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAG  103
            TT A + TT+A     A   ++T     A+ + GD    G  G   TLDC D  +L V G
Sbjct  4    TTAAGSLTTSAL----AVAVLSTAPPPVANAKNGDTHVTGE-GIVRTLDCND-SALFVNG  57

Query  104  SDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDN----LGAG  159
            + N +T  GTC  VTV G++N +  D +   +   G D TV + NGDP I +    LG  
Sbjct  58   TGNIITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVFFHNGDPFIWDRGRELGMV  117

Query  160  NRINK  164
            +R+ +
Sbjct  118  DRLQR  122


>gi|315446010|ref|YP_004078889.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
 gi|315264313|gb|ADU01055.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
Length=125

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 31/84 (37%), Positives = 45/84 (54%), Gaps = 5/84 (5%)

Query  85   IGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTV  144
            +G   T+DC D  +L V G+ N +   G C  VTV G++N +  D +   + V G D  V
Sbjct  40   VGVVRTIDCKD-STLFVNGNGNQVFAIGNCYAVTVQGSSNLVVVDSVANDITVYGWDQKV  98

Query  145  TYKNGDPTIDN----LGAGNRINK  164
             YKNG P + +    LG  N+IN+
Sbjct  99   FYKNGSPFVWDRGRELGMTNQINR  122


>gi|15607455|ref|NP_214828.1| hypothetical protein Rv0314c [Mycobacterium tuberculosis H37Rv]
 gi|148660080|ref|YP_001281603.1| hypothetical protein MRA_0323 [Mycobacterium tuberculosis H37Ra]
 gi|148821510|ref|YP_001286264.1| hypothetical protein TBFG_10319 [Mycobacterium tuberculosis F11]
 49 more sequence titles
 Length=220

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 35/117 (30%), Positives = 55/117 (48%), Gaps = 9/117 (7%)

Query  48   TATTTTATSGPTAAPTVTTGESTTASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNT  107
            T + + A   PTA P  T   +       G  L+   +    T+ C D   ++V+G  NT
Sbjct  112  TPSVSRAVPTPTAQPATTLPPA-------GASLSVSGVNVNRTIACNDSI-VSVSGMSNT  163

Query  108  LTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVTYKNGDPTIDNLGAGNRINK  164
            + + G C ++TV G  N +  D +D  +   G +N VTY +G P I N G  N + +
Sbjct  164  VVITGHCTSLTVSGMRNSVTVDSVDT-IEAAGFNNEVTYHSGSPKISNAGGSNSVQQ  219



Lambda     K      H
   0.309    0.124    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128736477480




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40