BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0680c
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607820|ref|NP_215194.1| transmembrane protein [Mycobacteriu... 250 5e-65
gi|183981030|ref|YP_001849321.1| hypothetical protein MMAR_1009 ... 207 6e-52
gi|118616545|ref|YP_904877.1| hypothetical protein MUL_0761 [Myc... 202 2e-50
gi|240167678|ref|ZP_04746337.1| hypothetical protein MkanA1_0008... 196 7e-49
gi|41410236|ref|NP_963072.1| hypothetical protein MAP4138c [Myco... 170 7e-41
gi|296168531|ref|ZP_06850336.1| transmembrane protein [Mycobacte... 166 8e-40
gi|342858835|ref|ZP_08715489.1| hypothetical protein MCOL_08163 ... 162 2e-38
gi|118472828|ref|YP_885780.1| transmembrane protein [Mycobacteri... 154 6e-36
gi|108797953|ref|YP_638150.1| hypothetical protein Mmcs_0980 [My... 152 2e-35
gi|333989332|ref|YP_004521946.1| transmembrane protein [Mycobact... 150 8e-35
gi|315446010|ref|YP_004078889.1| hypothetical protein Mspyr1_450... 146 9e-34
gi|254822764|ref|ZP_05227765.1| hypothetical protein MintA_22734... 146 1e-33
gi|120402286|ref|YP_952115.1| putative transmembrane protein [My... 142 2e-32
gi|169630932|ref|YP_001704581.1| hypothetical protein MAB_3853 [... 134 7e-30
gi|145225658|ref|YP_001136336.1| hypothetical protein Mflv_5082 ... 132 1e-29
gi|289744402|ref|ZP_06503780.1| conserved hypothetical protein [... 56.2 1e-06
gi|340625698|ref|YP_004744150.1| hypothetical protein MCAN_06801... 55.5 2e-06
gi|339293710|gb|AEJ45821.1| conserved threonine rich protein [My... 55.5 3e-06
gi|15607819|ref|NP_215193.1| putative threonine rich protein [My... 55.5 3e-06
gi|254231000|ref|ZP_04924327.1| conserved hypothetical threonine... 54.7 4e-06
gi|118465299|ref|YP_883630.1| hypothetical protein MAV_4496 [Myc... 53.1 1e-05
gi|289568620|ref|ZP_06448847.1| conserved threonine rich protein... 52.8 2e-05
gi|41410235|ref|NP_963071.1| hypothetical protein MAP4137c [Myco... 52.8 2e-05
gi|240171871|ref|ZP_04750530.1| hypothetical protein MkanA1_2132... 52.8 2e-05
gi|306782942|ref|ZP_07421264.1| conserved membrane protein [Myco... 52.8 2e-05
gi|308369363|ref|ZP_07417492.2| conserved membrane protein [Myco... 52.4 2e-05
gi|240173240|ref|ZP_04751898.1| hypothetical protein MkanA1_2826... 52.4 2e-05
gi|308377389|ref|ZP_07668501.1| conserved membrane protein [Myco... 52.4 2e-05
gi|31791493|ref|NP_853986.1| hypothetical protein Mb0322c [Mycob... 52.4 2e-05
gi|108797952|ref|YP_638149.1| hypothetical protein Mmcs_0979 [My... 52.0 3e-05
gi|119867049|ref|YP_937001.1| hypothetical protein Mkms_0997 [My... 52.0 3e-05
gi|336460543|gb|EGO39436.1| Protein of unknown function (DUF3060... 51.6 3e-05
gi|342858836|ref|ZP_08715490.1| hypothetical protein MCOL_08168 ... 51.2 5e-05
gi|118472451|ref|YP_885779.1| hypothetical protein MSMEG_1393 [M... 51.2 5e-05
gi|183981029|ref|YP_001849320.1| hypothetical protein MMAR_1008 ... 50.8 7e-05
gi|289748798|ref|ZP_06508176.1| conserved hypothetical protein [... 50.4 8e-05
gi|289748797|ref|ZP_06508175.1| conserved membrane protein [Myco... 50.4 8e-05
gi|15607455|ref|NP_214828.1| hypothetical protein Rv0314c [Mycob... 50.4 9e-05
gi|308395108|ref|ZP_07491908.2| conserved membrane protein [Myco... 50.4 1e-04
gi|340625345|ref|YP_004743797.1| hypothetical protein MCAN_03161... 50.1 1e-04
gi|240167676|ref|ZP_04746335.1| hypothetical protein MkanA1_0007... 49.7 1e-04
gi|254822765|ref|ZP_05227766.1| hypothetical protein MintA_22739... 48.5 3e-04
gi|333990177|ref|YP_004522791.1| hypothetical protein JDM601_153... 48.5 3e-04
gi|333989331|ref|YP_004521945.1| hypothetical protein JDM601_069... 48.1 4e-04
gi|108797854|ref|YP_638051.1| hypothetical protein Mmcs_0879 [My... 47.0 0.001
gi|118469764|ref|YP_889562.1| hypothetical protein MSMEG_5317 [M... 46.6 0.001
gi|342859208|ref|ZP_08715862.1| hypothetical protein MCOL_10028 ... 46.2 0.001
gi|120402285|ref|YP_952114.1| hypothetical protein Mvan_1274 [My... 46.2 0.002
gi|183980593|ref|YP_001848884.1| hypothetical protein MMAR_0565 ... 46.2 0.002
gi|118619805|ref|YP_908137.1| hypothetical protein MUL_4742 [Myc... 46.2 0.002
>gi|15607820|ref|NP_215194.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15840083|ref|NP_335120.1| hypothetical protein MT0708 [Mycobacterium tuberculosis CDC1551]
gi|31791864|ref|NP_854357.1| transmembrane protein [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=124
Score = 250 bits (638), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/124 (99%), Positives = 124/124 (100%), Gaps = 0/124 (0%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+KWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN
Sbjct 1 MKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL
Sbjct 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
Query 121 QRVG 124
QRVG
Sbjct 121 QRVG 124
>gi|183981030|ref|YP_001849321.1| hypothetical protein MMAR_1009 [Mycobacterium marinum M]
gi|183174356|gb|ACC39466.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=125
Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/124 (80%), Positives = 107/124 (87%), Gaps = 0/124 (0%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+KW T A SLA + +AV APPP A+AKNGDTHVTG+GI RTLDCN+STL VNGT N
Sbjct 1 MKWTTAAGSLATSALAVAVLSTAPPPVANAKNGDTHVTGEGIVRTLDCNDSTLFVNGTGN 60
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
I+TA GTCWAVTVMGSSNTVVADT++NDIT YGWDETVFF NGDPFIWDRGRELGMVNRL
Sbjct 61 IITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVFFHNGDPFIWDRGRELGMVNRL 120
Query 121 QRVG 124
QRVG
Sbjct 121 QRVG 124
>gi|118616545|ref|YP_904877.1| hypothetical protein MUL_0761 [Mycobacterium ulcerans Agy99]
gi|118568655|gb|ABL03406.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans
Agy99]
Length=125
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/124 (77%), Positives = 105/124 (85%), Gaps = 0/124 (0%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+KW T A SL + +AV APPP A+AKNGDTHVTG+GI RTLDCN+S L VNGT N
Sbjct 1 MKWTTAAGSLTTSALAVAVLSTAPPPVANAKNGDTHVTGEGIVRTLDCNDSALFVNGTGN 60
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
I+TA GTCWAVTVMGSSNTVVADT++NDIT YGWDETVFF NGDPFIWDRGRELGMV+RL
Sbjct 61 IITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVFFHNGDPFIWDRGRELGMVDRL 120
Query 121 QRVG 124
QRVG
Sbjct 121 QRVG 124
>gi|240167678|ref|ZP_04746337.1| hypothetical protein MkanA1_00080 [Mycobacterium kansasii ATCC
12478]
Length=128
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 97/127 (77%), Positives = 110/127 (87%), Gaps = 3/127 (2%)
Query 1 VKWNTVAASLAAGVITIAVALA---APPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNG 57
+KW T A SLA+ V+T+ A PAAHAKNGDTH+TG+G+E+ LDCN+STLLVNG
Sbjct 1 MKWTTAAVSLASCVVTVVTTAVTSIAQAPAAHAKNGDTHITGEGLEQVLDCNDSTLLVNG 60
Query 58 TQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMV 117
T NI+TA GTCWAVTVMGSSNTVVADT+INDITVYGWD+TVFF+NGDPFIWDRGRELGMV
Sbjct 61 TANIITAKGTCWAVTVMGSSNTVVADTVINDITVYGWDQTVFFKNGDPFIWDRGRELGMV 120
Query 118 NRLQRVG 124
NRLQRVG
Sbjct 121 NRLQRVG 127
>gi|41410236|ref|NP_963072.1| hypothetical protein MAP4138c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465908|ref|YP_883629.1| hypothetical protein MAV_4495 [Mycobacterium avium 104]
gi|254776930|ref|ZP_05218446.1| hypothetical protein MaviaA2_19996 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41399070|gb|AAS06688.1| hypothetical protein MAP_4138c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118167195|gb|ABK68092.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460542|gb|EGO39435.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=125
Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/123 (66%), Positives = 102/123 (83%), Gaps = 0/123 (0%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+KW TVA SLAA + + APP A AKNGDTH+ GQ E+T+DCN++TLLVNGT N
Sbjct 1 MKWTTVAGSLAACALAVLAGAVAPPRVAQAKNGDTHIIGQDTEQTIDCNDATLLVNGTGN 60
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
+VTALG C+AVTVMGSSNTV+AD++ +DITVYG+D+TVF+++G PF+WDRGRELGM NRL
Sbjct 61 VVTALGNCYAVTVMGSSNTVIADSVSHDITVYGYDQTVFYKSGQPFLWDRGRELGMTNRL 120
Query 121 QRV 123
Q+V
Sbjct 121 QQV 123
>gi|296168531|ref|ZP_06850336.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896673|gb|EFG76311.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=122
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/123 (71%), Positives = 103/123 (84%), Gaps = 3/123 (2%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+ W TVA SLA VIT+A AAHAKNGDTHV G+GIE+TLDCN++TLLVNGT+N
Sbjct 1 MNWTTVAGSLATCVITVAAVPVP---AAHAKNGDTHVIGEGIEQTLDCNDATLLVNGTRN 57
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
VTALG C+AVTVMGSSNTVVAD++ +DITVYG+D+TVF+ NG PF+WDRGRELGM NRL
Sbjct 58 NVTALGNCYAVTVMGSSNTVVADSVSHDITVYGYDQTVFYHNGSPFLWDRGRELGMTNRL 117
Query 121 QRV 123
Q+V
Sbjct 118 QQV 120
>gi|342858835|ref|ZP_08715489.1| hypothetical protein MCOL_08163 [Mycobacterium colombiense CECT
3035]
gi|342133076|gb|EGT86279.1| hypothetical protein MCOL_08163 [Mycobacterium colombiense CECT
3035]
Length=121
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/123 (63%), Positives = 100/123 (82%), Gaps = 4/123 (3%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+KW TVA SLA T +A+ A P A AKNGDTHV G+ IE+T+DCN++TL+VNG+
Sbjct 1 MKWTTVAGSLA----TCVIAVVALPGIAQAKNGDTHVIGEDIEQTVDCNDATLMVNGSGI 56
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
VTALG C+AVTVMGSSNTV+AD++ +DITVYG+++TVF+++G P +WDRGRELGM NRL
Sbjct 57 TVTALGNCYAVTVMGSSNTVIADSVSHDITVYGYNQTVFYKSGQPALWDRGRELGMTNRL 116
Query 121 QRV 123
Q+V
Sbjct 117 QQV 119
>gi|118472828|ref|YP_885780.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118174115|gb|ABK75011.1| probable conserved transmembrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=125
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/123 (61%), Positives = 91/123 (74%), Gaps = 0/123 (0%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+ W V + VI + +ALA P A AKNGDTH+TGQG+ERTLDCN +TL V GT N
Sbjct 1 MHWIAVGRIAVSCVIALPMALAVGLPTAGAKNGDTHITGQGVERTLDCNNATLFVTGTGN 60
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
+ A+GTCWAVTV GSSN VVA+ +INDITVYG+D+TVF++NG P + DRGREL M N +
Sbjct 61 HINAMGTCWAVTVQGSSNVVVAENVINDITVYGYDQTVFYKNGQPAVIDRGRELQMTNVI 120
Query 121 QRV 123
RV
Sbjct 121 DRV 123
>gi|108797953|ref|YP_638150.1| hypothetical protein Mmcs_0980 [Mycobacterium sp. MCS]
gi|119867050|ref|YP_937002.1| hypothetical protein Mkms_0998 [Mycobacterium sp. KMS]
gi|126433616|ref|YP_001069307.1| hypothetical protein Mjls_1008 [Mycobacterium sp. JLS]
gi|108768372|gb|ABG07094.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
gi|119693139|gb|ABL90212.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
gi|126233416|gb|ABN96816.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=125
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/98 (70%), Positives = 81/98 (83%), Gaps = 0/98 (0%)
Query 26 PAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTI 85
P+AHAKNGDTH+TG G+ +T+DC +S L VNG N V ALGTC+AVT+ GS N VVAD +
Sbjct 26 PSAHAKNGDTHITGTGLSQTIDCRDSVLHVNGNGNQVYALGTCYAVTMQGSGNLVVADNV 85
Query 86 INDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV 123
INDITVYGWD+TV ++NGDP IWDRGRELGM NR+ RV
Sbjct 86 INDITVYGWDQTVMYKNGDPIIWDRGRELGMTNRINRV 123
>gi|333989332|ref|YP_004521946.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333485300|gb|AEF34692.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=125
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/123 (60%), Positives = 90/123 (74%), Gaps = 0/123 (0%)
Query 1 VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN 60
+KW T+ A+L +A LA P+AHA GDTHV G RTLDCN TL +NG N
Sbjct 1 MKWTTLGAALLCVTGGLASGLAGGTPSAHAVPGDTHVYGVHETRTLDCNGGTLFINGVNN 60
Query 61 IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL 120
V A+G CWAVT+ GS NTV+A+TIIND+TVYG+D+TV++ NGDP ++DRGRELGM NRL
Sbjct 61 TVHAMGNCWAVTLQGSQNTVIAETIINDVTVYGYDQTVYYHNGDPLLFDRGRELGMTNRL 120
Query 121 QRV 123
QRV
Sbjct 121 QRV 123
>gi|315446010|ref|YP_004078889.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
gi|315264313|gb|ADU01055.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
Length=125
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 64/98 (66%), Positives = 79/98 (81%), Gaps = 0/98 (0%)
Query 26 PAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTI 85
P A A+NGDTH+TG G+ RT+DC +STL VNG N V A+G C+AVTV GSSN VV D++
Sbjct 26 PVAQAENGDTHITGVGVVRTIDCKDSTLFVNGNGNQVFAIGNCYAVTVQGSSNLVVVDSV 85
Query 86 INDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV 123
NDITVYGWD+ VF++NG PF+WDRGRELGM N++ RV
Sbjct 86 ANDITVYGWDQKVFYKNGSPFVWDRGRELGMTNQINRV 123
>gi|254822764|ref|ZP_05227765.1| hypothetical protein MintA_22734 [Mycobacterium intracellulare
ATCC 13950]
Length=116
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/99 (67%), Positives = 83/99 (84%), Gaps = 0/99 (0%)
Query 25 PPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADT 84
P A AKNGDTHV G+ +E+T+DCN++TLLVNG+ VTALG C+AVTVMGSSN V+AD+
Sbjct 16 PGLAQAKNGDTHVIGEDMEQTVDCNDATLLVNGSFLTVTALGNCYAVTVMGSSNVVIADS 75
Query 85 IINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV 123
+ +DITVYG D+TV ++ G PF+WDRGRELGM NRLQ+V
Sbjct 76 VSHDITVYGHDQTVLYKGGQPFLWDRGRELGMTNRLQQV 114
>gi|120402286|ref|YP_952115.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
gi|119955104|gb|ABM12109.1| putative conserved transmembrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=110
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/104 (71%), Positives = 87/104 (84%), Gaps = 0/104 (0%)
Query 20 ALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNT 79
ALA+ P A AKNGDTH+TG G+E+T+DCNESTL+V G N + ALGTCWAVTV GSSN
Sbjct 5 ALASVNPVAQAKNGDTHITGIGVEQTIDCNESTLIVLGNNNRINALGTCWAVTVQGSSNV 64
Query 80 VVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV 123
VVAD ++NDITVYGWD+TVF++NG P +WDRGRELGM NR+ RV
Sbjct 65 VVADNVVNDITVYGWDQTVFYKNGAPIVWDRGRELGMTNRIDRV 108
>gi|169630932|ref|YP_001704581.1| hypothetical protein MAB_3853 [Mycobacterium abscessus ATCC 19977]
gi|169242899|emb|CAM63927.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=126
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/94 (59%), Positives = 80/94 (86%), Gaps = 0/94 (0%)
Query 30 AKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDI 89
AKNGDTH+T G+ T+DCN+ST+ VNG+QN++TALG+C+A++V GS NT++AD ++NDI
Sbjct 31 AKNGDTHITQYGLVTTIDCNDSTVFVNGSQNVITALGSCYAISVQGSHNTIIADNVVNDI 90
Query 90 TVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV 123
TVYG+++ V +++G+P I DRGRELGM+N + RV
Sbjct 91 TVYGFNQKVLYKSGEPAIIDRGRELGMMNFIDRV 124
>gi|145225658|ref|YP_001136336.1| hypothetical protein Mflv_5082 [Mycobacterium gilvum PYR-GCK]
gi|145218144|gb|ABP47548.1| putative conserved transmembrane protein [Mycobacterium gilvum
PYR-GCK]
Length=104
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/101 (66%), Positives = 81/101 (81%), Gaps = 0/101 (0%)
Query 23 APPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVA 82
+ P A A+NGDTHVTG G+ RT+DC +STL VNG N V A+G C+AVTV GSSN VVA
Sbjct 2 STSPLASAENGDTHVTGVGVVRTVDCRDSTLFVNGNGNQVFAIGNCYAVTVQGSSNLVVA 61
Query 83 DTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV 123
D ++NDITVYGWD+ VF++NG PF+WDRGRELGM N++ RV
Sbjct 62 DNVVNDITVYGWDQKVFYKNGAPFVWDRGRELGMTNQINRV 102
>gi|289744402|ref|ZP_06503780.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289756767|ref|ZP_06516145.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294993056|ref|ZP_06798747.1| hypothetical protein Mtub2_00745 [Mycobacterium tuberculosis
210]
gi|289684930|gb|EFD52418.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289712331|gb|EFD76343.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326905099|gb|EGE52032.1| conserved threonine rich protein [Mycobacterium tuberculosis
W-148]
Length=165
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 48/83 (58%), Gaps = 5/83 (6%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G+ N +T GTC VTV G++N + D I + V G D+TV
Sbjct 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDKTVT 145
Query 100 FRNGDPFIWDRGRELGMVNRLQR 122
++NGDP I + LG NR+ +
Sbjct 146 YKNGDPTIDN----LGAGNRINK 164
>gi|340625698|ref|YP_004744150.1| hypothetical protein MCAN_06801 [Mycobacterium canettii CIPT
140010059]
gi|340003888|emb|CCC43020.1| conserved hypothetical threonine rich protein [Mycobacterium
canettii CIPT 140010059]
Length=166
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G+ N +T GTC VTV G++N + D I + V G D TV
Sbjct 87 GTTATLDCADGKSLNVAGSNNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 146
Query 100 FRNGDPFIWDRGRELGMVNRLQR 122
++NGDP I + LG NR+ +
Sbjct 147 YKNGDPTIDN----LGAGNRINK 165
>gi|339293710|gb|AEJ45821.1| conserved threonine rich protein [Mycobacterium tuberculosis
CCDC5079]
gi|339297349|gb|AEJ49459.1| conserved threonine rich protein [Mycobacterium tuberculosis
CCDC5180]
Length=102
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G+ N +T GTC VTV G++N + D I + V G D+TV
Sbjct 23 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDKTVT 82
Query 100 FRNGDPFIWDRGRELGMVNRLQR 122
++NGDP I LG NR+ +
Sbjct 83 YKNGDPTI----DNLGAGNRINK 101
>gi|15607819|ref|NP_215193.1| putative threonine rich protein [Mycobacterium tuberculosis H37Rv]
gi|15840082|ref|NP_335119.1| hypothetical protein MT0707 [Mycobacterium tuberculosis CDC1551]
gi|31791863|ref|NP_854356.1| putative threonine rich protein [Mycobacterium bovis AF2122/97]
66 more sequence titles
Length=165
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G+ N +T GTC VTV G++N + D I + V G D TV
Sbjct 86 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 145
Query 100 FRNGDPFIWDRGRELGMVNRLQR 122
++NGDP I + LG NR+ +
Sbjct 146 YKNGDPTIDN----LGAGNRINK 164
>gi|254231000|ref|ZP_04924327.1| conserved hypothetical threonine rich protein [Mycobacterium
tuberculosis C]
gi|124600059|gb|EAY59069.1| conserved hypothetical threonine rich protein [Mycobacterium
tuberculosis C]
Length=102
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 46/83 (56%), Gaps = 5/83 (6%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G+ N +T GTC VTV G++N + D I + V G D TV
Sbjct 23 GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT 82
Query 100 FRNGDPFIWDRGRELGMVNRLQR 122
++NGDP I LG NR+ +
Sbjct 83 YKNGDPTI----DNLGAGNRINK 101
>gi|118465299|ref|YP_883630.1| hypothetical protein MAV_4496 [Mycobacterium avium 104]
gi|118166586|gb|ABK67483.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=144
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (35%), Positives = 47/85 (56%), Gaps = 5/85 (5%)
Query 41 GIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC +L V G+ N +T GTC + TV G++N + D + ITV G + T+
Sbjct 64 GTTTTLDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTIT 123
Query 100 FRNGDPFIWDRGRELGMVNRLQRVG 124
+++GDP + ++G N + + G
Sbjct 124 YKDGDPKV----DKIGQSNTINKGG 144
>gi|289568620|ref|ZP_06448847.1| conserved threonine rich protein [Mycobacterium tuberculosis
T17]
gi|289542374|gb|EFD46022.1| conserved threonine rich protein [Mycobacterium tuberculosis
T17]
Length=167
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/97 (40%), Positives = 51/97 (53%), Gaps = 6/97 (6%)
Query 28 AHAKNGDTHVTGQ-GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTI 85
A + GD G G TLDC + +L V G+ N +T GTC VTV G++N + D I
Sbjct 74 ASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRI 133
Query 86 INDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQR 122
+ V G D TV ++NGDP I LG NR+ +
Sbjct 134 DERLVVVGLDNTVTYKNGDPTI----DNLGAGNRINK 166
>gi|41410235|ref|NP_963071.1| hypothetical protein MAP4137c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254776931|ref|ZP_05218447.1| hypothetical protein MaviaA2_20001 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41399069|gb|AAS06687.1| hypothetical protein MAP_4137c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=161
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (35%), Positives = 47/85 (56%), Gaps = 5/85 (5%)
Query 41 GIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC +L V G+ N +T GTC + TV G++N + D + ITV G + T+
Sbjct 81 GTTTTLDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTIT 140
Query 100 FRNGDPFIWDRGRELGMVNRLQRVG 124
+++GDP + ++G N + + G
Sbjct 141 YKDGDPKV----DKIGQSNTINKGG 161
>gi|240171871|ref|ZP_04750530.1| hypothetical protein MkanA1_21325 [Mycobacterium kansasii ATCC
12478]
Length=128
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/115 (33%), Positives = 52/115 (46%), Gaps = 13/115 (11%)
Query 9 SLAAGVITIAVALAAP-----------PPAAHAKNGDTHVTGQGIERTLDC-NESTLLVN 56
L G + I AL P PP A N T G TLDC +L +
Sbjct 7 QLLIGSMVIVAALGVPGCHKKQQAVDKPPVAEMNNTINDGT-FGKTETLDCAGGKSLNIG 65
Query 57 GTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
G++N +T G C V + G N + + I ++TV G + TV +R+GDP + D G
Sbjct 66 GSKNTLTVKGRCAKVIIGGDDNKISFENIETELTVAGLNNTVTYRDGDPSVADLG 120
>gi|306782942|ref|ZP_07421264.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787310|ref|ZP_07425632.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791863|ref|ZP_07430165.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
7 more sequence titles
Length=220
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+ST+ V+G N V G C
Sbjct 112 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSTVSVSGMSNTVVITGHCT 171
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 172 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 212
>gi|308369363|ref|ZP_07417492.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308375123|ref|ZP_07442788.2| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308327865|gb|EFP16716.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308347376|gb|EFP36227.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
Length=217
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+ST+ V+G N V G C
Sbjct 109 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSTVSVSGMSNTVVITGHCT 168
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 169 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 209
>gi|240173240|ref|ZP_04751898.1| hypothetical protein MkanA1_28266 [Mycobacterium kansasii ATCC
12478]
Length=244
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (35%), Positives = 46/89 (52%), Gaps = 6/89 (6%)
Query 23 APPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVA 82
APPP G+ V+G +TLDCN+S + ++G N V G C ++TV G NTV
Sbjct 154 APPPG-----GNLSVSGLNENKTLDCNDSVVEISGMSNTVVITGHCASLTVSGIENTVTV 208
Query 83 DTIINDITVYGWDETVFFRNGDPFIWDRG 111
D ++ I G + V + +G P + G
Sbjct 209 D-AVDTIEASGINNKVTYHSGSPKVSKSG 236
>gi|308377389|ref|ZP_07668501.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308355951|gb|EFP44802.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
Length=283
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAK------NGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+ST+ V+G N V G C
Sbjct 175 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSTVSVSGMSNTVVITGHCT 234
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 235 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 275
>gi|31791493|ref|NP_853986.1| hypothetical protein Mb0322c [Mycobacterium bovis AF2122/97]
gi|121636229|ref|YP_976452.1| hypothetical protein BCG_0354c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224988702|ref|YP_002643389.1| hypothetical protein JTY_0324 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31617079|emb|CAD93186.1| POSSIBLE CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
gi|121491876|emb|CAL70339.1| Possible conserved membrane protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224771815|dbj|BAH24621.1| hypothetical protein JTY_0324 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341600245|emb|CCC62915.1| possible conserved membrane protein [Mycobacterium bovis BCG
str. Moreau RDJ]
Length=220
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+S + V+G N V G C
Sbjct 112 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT 171
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V AD+ ++ I G++ V + +G P I + G
Sbjct 172 SLTVSGMRNSVTADS-VDTIEAAGFNNEVTYHSGSPKISNAG 212
>gi|108797952|ref|YP_638149.1| hypothetical protein Mmcs_0979 [Mycobacterium sp. MCS]
gi|108768371|gb|ABG07093.1| conserved hypothetical protein [Mycobacterium sp. MCS]
Length=136
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 47/85 (56%), Gaps = 5/85 (5%)
Query 41 GIERTLDCNESTLL-VNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G +DC + L V G+ N +T GTC V + G+ NT+ + + +ITV G + T+
Sbjct 56 GTTAEVDCADGKALNVGGSNNKLTVTGTCANVNIGGTDNTISFERVDKEITVVGLNNTIT 115
Query 100 FRNGDPFIWDRGRELGMVNRLQRVG 124
+R+GDP I D LG N++ + G
Sbjct 116 YRDGDPKIDD----LGSNNKITKQG 136
>gi|119867049|ref|YP_937001.1| hypothetical protein Mkms_0997 [Mycobacterium sp. KMS]
gi|126433615|ref|YP_001069306.1| hypothetical protein Mjls_1007 [Mycobacterium sp. JLS]
gi|119693138|gb|ABL90211.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126233415|gb|ABN96815.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=141
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (37%), Positives = 46/80 (58%), Gaps = 5/80 (6%)
Query 46 LDCNESTLL-VNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGD 104
+DC + L V G+ N +T GTC V + G+ NT+ + + +ITV G + T+ +R+GD
Sbjct 66 VDCADGKALNVGGSNNKLTVTGTCANVNIGGTDNTISFERVDKEITVVGLNNTITYRDGD 125
Query 105 PFIWDRGRELGMVNRLQRVG 124
P I D LG N++ + G
Sbjct 126 PKIDD----LGSNNKITKQG 141
>gi|336460543|gb|EGO39436.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=160
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (35%), Positives = 46/81 (57%), Gaps = 5/81 (6%)
Query 45 TLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNG 103
TLDC +L V G+ N +T GTC + TV G++N + D + ITV G + T+ +++G
Sbjct 84 TLDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDG 143
Query 104 DPFIWDRGRELGMVNRLQRVG 124
DP + ++G N + + G
Sbjct 144 DPKV----DKIGQSNTINKGG 160
>gi|342858836|ref|ZP_08715490.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT
3035]
gi|342133077|gb|EGT86280.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT
3035]
Length=161
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (37%), Positives = 42/74 (57%), Gaps = 1/74 (1%)
Query 41 GIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G+ N +T GTC TV G++N + D + ITV G + T+
Sbjct 81 GTTTTLDCASGKSLNVGGSDNNLTVTGTCETATVSGTNNKITFDKVNTRITVLGMNNTIT 140
Query 100 FRNGDPFIWDRGRE 113
+++GDP + G+
Sbjct 141 YKDGDPKVDKIGQS 154
>gi|118472451|ref|YP_885779.1| hypothetical protein MSMEG_1393 [Mycobacterium smegmatis str.
MC2 155]
gi|118173738|gb|ABK74634.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=136
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/67 (39%), Positives = 39/67 (59%), Gaps = 1/67 (1%)
Query 46 LDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGD 104
+DC + +L V G N +T GTC V + GS N + + I D+TV G + T+ +R+GD
Sbjct 62 IDCADGKSLTVGGANNTLTVKGTCANVNIGGSDNKITFEKIDKDLTVVGLNNTITYRDGD 121
Query 105 PFIWDRG 111
P I + G
Sbjct 122 PKINNTG 128
>gi|183981029|ref|YP_001849320.1| hypothetical protein MMAR_1008 [Mycobacterium marinum M]
gi|183174355|gb|ACC39465.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=158
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/72 (38%), Positives = 43/72 (60%), Gaps = 1/72 (1%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G++N +T GTC VT+ G++N + D I +TV G D T+
Sbjct 79 GTTATLDCADGKSLNVAGSENNLTVTGTCATVTIGGTNNKITFDKIDQRLTVLGIDNTIT 138
Query 100 FRNGDPFIWDRG 111
++ G+P + + G
Sbjct 139 YKAGEPKVDNIG 150
>gi|289748798|ref|ZP_06508176.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689385|gb|EFD56814.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=211
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+S + V+G N V G C
Sbjct 103 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT 162
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 163 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 203
>gi|289748797|ref|ZP_06508175.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289689384|gb|EFD56813.1| conserved membrane protein [Mycobacterium tuberculosis T92]
Length=220
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+S + V+G N V G C
Sbjct 112 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT 171
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 172 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 212
>gi|15607455|ref|NP_214828.1| hypothetical protein Rv0314c [Mycobacterium tuberculosis H37Rv]
gi|148660080|ref|YP_001281603.1| hypothetical protein MRA_0323 [Mycobacterium tuberculosis H37Ra]
gi|148821510|ref|YP_001286264.1| hypothetical protein TBFG_10319 [Mycobacterium tuberculosis F11]
49 more sequence titles
Length=220
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+S + V+G N V G C
Sbjct 112 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT 171
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 172 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 212
>gi|308395108|ref|ZP_07491908.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|308367498|gb|EFP56349.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
Length=217
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+S + V+G N V G C
Sbjct 109 TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT 168
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 169 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 209
>gi|340625345|ref|YP_004743797.1| hypothetical protein MCAN_03161 [Mycobacterium canettii CIPT
140010059]
gi|340003535|emb|CCC42656.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=220
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query 16 TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW 69
T +V+ A P P A V+G + RT+ CN+S + V+G N V G C
Sbjct 112 TPSVSRAIPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT 171
Query 70 AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
++TV G N+V D+ ++ I G++ V + +G P I + G
Sbjct 172 SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG 212
>gi|240167676|ref|ZP_04746335.1| hypothetical protein MkanA1_00070 [Mycobacterium kansasii ATCC
12478]
Length=88
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (36%), Positives = 44/73 (61%), Gaps = 1/73 (1%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G TLDC + +L V G++N +T GTC VT+ G++N + D I ++V G + T+
Sbjct 8 GTTATLDCADGKSLNVAGSENTLTVNGTCSTVTIGGTNNKITFDKIDQHLSVLGLNNTIT 67
Query 100 FRNGDPFIWDRGR 112
+++GDP + + G
Sbjct 68 YKDGDPKVDNIGS 80
>gi|254822765|ref|ZP_05227766.1| hypothetical protein MintA_22739 [Mycobacterium intracellulare
ATCC 13950]
Length=150
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (55%), Gaps = 1/75 (1%)
Query 40 QGIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETV 98
G LDC +L V G+ N +T G+C V + G++N + D + ITV G + T+
Sbjct 69 MGTTTNLDCATGKSLNVAGSDNTLTVTGSCSTVNIGGTNNKITLDKVEKRITVLGMNNTI 128
Query 99 FFRNGDPFIWDRGRE 113
+++GDP + + G +
Sbjct 129 TYKDGDPKVDNLGSD 143
>gi|333990177|ref|YP_004522791.1| hypothetical protein JDM601_1537 [Mycobacterium sp. JDM601]
gi|333486145|gb|AEF35537.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=199
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/108 (31%), Positives = 51/108 (48%), Gaps = 1/108 (0%)
Query 4 NTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVT 63
+T A + + V + A A+P + V+G G ++TL C + + V+G +N +T
Sbjct 85 STAAPTPSRSVPVVPPASASPANPTPGRADTITVSGAGQDKTLACAGNQVSVSGVRNTIT 144
Query 64 ALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
G C +TV G N + D IT G D V +R GDP + G
Sbjct 145 LTGRCAGLTVSGIGNVITVD-FTPAITTSGVDNRVTYRFGDPEVSTSG 191
>gi|333989331|ref|YP_004521945.1| hypothetical protein JDM601_0691 [Mycobacterium sp. JDM601]
gi|333485299|gb|AEF34691.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=134
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 40/72 (56%), Gaps = 1/72 (1%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G +DC + +L V G+ N +T G C AV V G+ N + + + +T+ G + +V
Sbjct 54 GTTSAVDCADGKSLNVAGSNNRLTVRGRCEAVNVAGADNRITVERVDKSLTITGLNNSVA 113
Query 100 FRNGDPFIWDRG 111
+R G+P + DRG
Sbjct 114 YRAGEPRVDDRG 125
>gi|108797854|ref|YP_638051.1| hypothetical protein Mmcs_0879 [Mycobacterium sp. MCS]
gi|119866948|ref|YP_936900.1| hypothetical protein Mkms_0896 [Mycobacterium sp. KMS]
gi|126433494|ref|YP_001069185.1| hypothetical protein Mjls_0885 [Mycobacterium sp. JLS]
gi|108768273|gb|ABG06995.1| putative conserved membrane protein [Mycobacterium sp. MCS]
gi|119693037|gb|ABL90110.1| putative conserved membrane protein [Mycobacterium sp. KMS]
gi|126233294|gb|ABN96694.1| putative conserved membrane protein [Mycobacterium sp. JLS]
Length=233
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (35%), Positives = 48/90 (54%), Gaps = 8/90 (8%)
Query 18 AVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSS 77
AVA A P G V+G ++ + C++S + V+G N VT G C +VTV G
Sbjct 141 AVAQAPP-------GGQFSVSGVEGDKRVACDDSLISVSGVSNTVTITGHCVSVTVSGVG 193
Query 78 NTVVADTIINDITVYGWDETVFFRNGDPFI 107
N V+ ++ + I+ G++ V F+ GDP I
Sbjct 194 NEVIVES-ADRISASGFENRVTFQTGDPQI 222
>gi|118469764|ref|YP_889562.1| hypothetical protein MSMEG_5317 [Mycobacterium smegmatis str.
MC2 155]
gi|118171051|gb|ABK71947.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=248
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (33%), Positives = 48/87 (56%), Gaps = 5/87 (5%)
Query 36 HVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWD 95
+V G +R + C+ T++V+G +N +T G C AVT+ G N + D + I V G++
Sbjct 164 NVAGASNDREVTCDGGTVMVSGVENTITITGHCAAVTISGIRNVIEVDE-ADTIGVSGFE 222
Query 96 ETVFFRNGDPFIWDRGRELGMVNRLQR 122
V + +G+P I + GM N ++R
Sbjct 223 NRVTYSSGEPEIT----KSGMDNTVER 245
>gi|342859208|ref|ZP_08715862.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT
3035]
gi|342133449|gb|EGT86652.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT
3035]
Length=227
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (30%), Positives = 48/94 (52%), Gaps = 7/94 (7%)
Query 18 AVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSS 77
+ + AAPP + V G RT+ CN++ + V+G N VT G C +++V G
Sbjct 133 STSPAAPP------GTELSVAGINENRTITCNDNIVSVSGVSNTVTITGHCTSLSVSGVQ 186
Query 78 NTVVADTIINDITVYGWDETVFFRNGDPFIWDRG 111
N++ + ++ I G+D V + +G P I + G
Sbjct 187 NSITVEA-VDSIEASGFDNKVTYHSGAPKISNSG 219
>gi|120402285|ref|YP_952114.1| hypothetical protein Mvan_1274 [Mycobacterium vanbaalenii PYR-1]
gi|119955103|gb|ABM12108.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=133
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 41/72 (57%), Gaps = 1/72 (1%)
Query 41 GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF 99
G +DC + +L V G+ N +T GTC V + G+ N + + + +++V G + TV
Sbjct 54 GTTADIDCADGKSLNVGGSNNTLTVKGTCANVNIGGADNKISFERVDAELSVVGLNNTVT 113
Query 100 FRNGDPFIWDRG 111
+R+GDP + D G
Sbjct 114 YRDGDPKVNDTG 125
>gi|183980593|ref|YP_001848884.1| hypothetical protein MMAR_0565 [Mycobacterium marinum M]
gi|183173919|gb|ACC39029.1| conserved membrane protein [Mycobacterium marinum M]
Length=239
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/91 (36%), Positives = 47/91 (52%), Gaps = 2/91 (2%)
Query 22 AAPPPAAHAKNGDT-HVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTV 80
A P +A G T V G +T+ CN++ + V+G N VT G C +V+V G NTV
Sbjct 142 AGPSTSAGPPAGSTISVVGVNQSQTITCNDNIVNVSGMSNTVTITGHCASVSVSGLQNTV 201
Query 81 VADTIINDITVYGWDETVFFRNGDPFIWDRG 111
+T + IT G + V +++G P I G
Sbjct 202 TVET-ADRITASGLNNKVTYQSGSPKISKSG 231
>gi|118619805|ref|YP_908137.1| hypothetical protein MUL_4742 [Mycobacterium ulcerans Agy99]
gi|118571915|gb|ABL06666.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=242
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/91 (36%), Positives = 47/91 (52%), Gaps = 2/91 (2%)
Query 22 AAPPPAAHAKNGDT-HVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTV 80
A P +A G T V G +T+ CN++ + V+G N VT G C +V+V G NTV
Sbjct 145 AGPSTSAGPPAGSTISVVGVNQSQTITCNDNIVNVSGMSNTVTITGHCASVSVSGLQNTV 204
Query 81 VADTIINDITVYGWDETVFFRNGDPFIWDRG 111
+T + IT G + V +++G P I G
Sbjct 205 TVET-ADRITASGLNNKVTYQSGSPKISKSG 234
Lambda K H
0.319 0.133 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130872486112
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40