BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0680c

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607820|ref|NP_215194.1|  transmembrane protein [Mycobacteriu...   250    5e-65
gi|183981030|ref|YP_001849321.1|  hypothetical protein MMAR_1009 ...   207    6e-52
gi|118616545|ref|YP_904877.1|  hypothetical protein MUL_0761 [Myc...   202    2e-50
gi|240167678|ref|ZP_04746337.1|  hypothetical protein MkanA1_0008...   196    7e-49
gi|41410236|ref|NP_963072.1|  hypothetical protein MAP4138c [Myco...   170    7e-41
gi|296168531|ref|ZP_06850336.1|  transmembrane protein [Mycobacte...   166    8e-40
gi|342858835|ref|ZP_08715489.1|  hypothetical protein MCOL_08163 ...   162    2e-38
gi|118472828|ref|YP_885780.1|  transmembrane protein [Mycobacteri...   154    6e-36
gi|108797953|ref|YP_638150.1|  hypothetical protein Mmcs_0980 [My...   152    2e-35
gi|333989332|ref|YP_004521946.1|  transmembrane protein [Mycobact...   150    8e-35
gi|315446010|ref|YP_004078889.1|  hypothetical protein Mspyr1_450...   146    9e-34
gi|254822764|ref|ZP_05227765.1|  hypothetical protein MintA_22734...   146    1e-33
gi|120402286|ref|YP_952115.1|  putative transmembrane protein [My...   142    2e-32
gi|169630932|ref|YP_001704581.1|  hypothetical protein MAB_3853 [...   134    7e-30
gi|145225658|ref|YP_001136336.1|  hypothetical protein Mflv_5082 ...   132    1e-29
gi|289744402|ref|ZP_06503780.1|  conserved hypothetical protein [...  56.2    1e-06
gi|340625698|ref|YP_004744150.1|  hypothetical protein MCAN_06801...  55.5    2e-06
gi|339293710|gb|AEJ45821.1|  conserved threonine rich protein [My...  55.5    3e-06
gi|15607819|ref|NP_215193.1|  putative threonine rich protein [My...  55.5    3e-06
gi|254231000|ref|ZP_04924327.1|  conserved hypothetical threonine...  54.7    4e-06
gi|118465299|ref|YP_883630.1|  hypothetical protein MAV_4496 [Myc...  53.1    1e-05
gi|289568620|ref|ZP_06448847.1|  conserved threonine rich protein...  52.8    2e-05
gi|41410235|ref|NP_963071.1|  hypothetical protein MAP4137c [Myco...  52.8    2e-05
gi|240171871|ref|ZP_04750530.1|  hypothetical protein MkanA1_2132...  52.8    2e-05
gi|306782942|ref|ZP_07421264.1|  conserved membrane protein [Myco...  52.8    2e-05
gi|308369363|ref|ZP_07417492.2|  conserved membrane protein [Myco...  52.4    2e-05
gi|240173240|ref|ZP_04751898.1|  hypothetical protein MkanA1_2826...  52.4    2e-05
gi|308377389|ref|ZP_07668501.1|  conserved membrane protein [Myco...  52.4    2e-05
gi|31791493|ref|NP_853986.1|  hypothetical protein Mb0322c [Mycob...  52.4    2e-05
gi|108797952|ref|YP_638149.1|  hypothetical protein Mmcs_0979 [My...  52.0    3e-05
gi|119867049|ref|YP_937001.1|  hypothetical protein Mkms_0997 [My...  52.0    3e-05
gi|336460543|gb|EGO39436.1|  Protein of unknown function (DUF3060...  51.6    3e-05
gi|342858836|ref|ZP_08715490.1|  hypothetical protein MCOL_08168 ...  51.2    5e-05
gi|118472451|ref|YP_885779.1|  hypothetical protein MSMEG_1393 [M...  51.2    5e-05
gi|183981029|ref|YP_001849320.1|  hypothetical protein MMAR_1008 ...  50.8    7e-05
gi|289748798|ref|ZP_06508176.1|  conserved hypothetical protein [...  50.4    8e-05
gi|289748797|ref|ZP_06508175.1|  conserved membrane protein [Myco...  50.4    8e-05
gi|15607455|ref|NP_214828.1|  hypothetical protein Rv0314c [Mycob...  50.4    9e-05
gi|308395108|ref|ZP_07491908.2|  conserved membrane protein [Myco...  50.4    1e-04
gi|340625345|ref|YP_004743797.1|  hypothetical protein MCAN_03161...  50.1    1e-04
gi|240167676|ref|ZP_04746335.1|  hypothetical protein MkanA1_0007...  49.7    1e-04
gi|254822765|ref|ZP_05227766.1|  hypothetical protein MintA_22739...  48.5    3e-04
gi|333990177|ref|YP_004522791.1|  hypothetical protein JDM601_153...  48.5    3e-04
gi|333989331|ref|YP_004521945.1|  hypothetical protein JDM601_069...  48.1    4e-04
gi|108797854|ref|YP_638051.1|  hypothetical protein Mmcs_0879 [My...  47.0    0.001
gi|118469764|ref|YP_889562.1|  hypothetical protein MSMEG_5317 [M...  46.6    0.001
gi|342859208|ref|ZP_08715862.1|  hypothetical protein MCOL_10028 ...  46.2    0.001
gi|120402285|ref|YP_952114.1|  hypothetical protein Mvan_1274 [My...  46.2    0.002
gi|183980593|ref|YP_001848884.1|  hypothetical protein MMAR_0565 ...  46.2    0.002
gi|118619805|ref|YP_908137.1|  hypothetical protein MUL_4742 [Myc...  46.2    0.002


>gi|15607820|ref|NP_215194.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15840083|ref|NP_335120.1| hypothetical protein MT0708 [Mycobacterium tuberculosis CDC1551]
 gi|31791864|ref|NP_854357.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=124

 Score =  250 bits (638),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 123/124 (99%), Positives = 124/124 (100%), Gaps = 0/124 (0%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            +KWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN
Sbjct  1    MKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
            IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL
Sbjct  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120

Query  121  QRVG  124
            QRVG
Sbjct  121  QRVG  124


>gi|183981030|ref|YP_001849321.1| hypothetical protein MMAR_1009 [Mycobacterium marinum M]
 gi|183174356|gb|ACC39466.1| conserved hypothetical transmembrane protein [Mycobacterium marinum 
M]
Length=125

 Score =  207 bits (526),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 98/124 (80%), Positives = 107/124 (87%), Gaps = 0/124 (0%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            +KW T A SLA   + +AV   APPP A+AKNGDTHVTG+GI RTLDCN+STL VNGT N
Sbjct  1    MKWTTAAGSLATSALAVAVLSTAPPPVANAKNGDTHVTGEGIVRTLDCNDSTLFVNGTGN  60

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
            I+TA GTCWAVTVMGSSNTVVADT++NDIT YGWDETVFF NGDPFIWDRGRELGMVNRL
Sbjct  61   IITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVFFHNGDPFIWDRGRELGMVNRL  120

Query  121  QRVG  124
            QRVG
Sbjct  121  QRVG  124


>gi|118616545|ref|YP_904877.1| hypothetical protein MUL_0761 [Mycobacterium ulcerans Agy99]
 gi|118568655|gb|ABL03406.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans 
Agy99]
Length=125

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 95/124 (77%), Positives = 105/124 (85%), Gaps = 0/124 (0%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            +KW T A SL    + +AV   APPP A+AKNGDTHVTG+GI RTLDCN+S L VNGT N
Sbjct  1    MKWTTAAGSLTTSALAVAVLSTAPPPVANAKNGDTHVTGEGIVRTLDCNDSALFVNGTGN  60

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
            I+TA GTCWAVTVMGSSNTVVADT++NDIT YGWDETVFF NGDPFIWDRGRELGMV+RL
Sbjct  61   IITAKGTCWAVTVMGSSNTVVADTVVNDITAYGWDETVFFHNGDPFIWDRGRELGMVDRL  120

Query  121  QRVG  124
            QRVG
Sbjct  121  QRVG  124


>gi|240167678|ref|ZP_04746337.1| hypothetical protein MkanA1_00080 [Mycobacterium kansasii ATCC 
12478]
Length=128

 Score =  196 bits (499),  Expect = 7e-49, Method: Compositional matrix adjust.
 Identities = 97/127 (77%), Positives = 110/127 (87%), Gaps = 3/127 (2%)

Query  1    VKWNTVAASLAAGVITIAVALA---APPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNG  57
            +KW T A SLA+ V+T+        A  PAAHAKNGDTH+TG+G+E+ LDCN+STLLVNG
Sbjct  1    MKWTTAAVSLASCVVTVVTTAVTSIAQAPAAHAKNGDTHITGEGLEQVLDCNDSTLLVNG  60

Query  58   TQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMV  117
            T NI+TA GTCWAVTVMGSSNTVVADT+INDITVYGWD+TVFF+NGDPFIWDRGRELGMV
Sbjct  61   TANIITAKGTCWAVTVMGSSNTVVADTVINDITVYGWDQTVFFKNGDPFIWDRGRELGMV  120

Query  118  NRLQRVG  124
            NRLQRVG
Sbjct  121  NRLQRVG  127


>gi|41410236|ref|NP_963072.1| hypothetical protein MAP4138c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118465908|ref|YP_883629.1| hypothetical protein MAV_4495 [Mycobacterium avium 104]
 gi|254776930|ref|ZP_05218446.1| hypothetical protein MaviaA2_19996 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41399070|gb|AAS06688.1| hypothetical protein MAP_4138c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118167195|gb|ABK68092.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336460542|gb|EGO39435.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=125

 Score =  170 bits (430),  Expect = 7e-41, Method: Compositional matrix adjust.
 Identities = 81/123 (66%), Positives = 102/123 (83%), Gaps = 0/123 (0%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            +KW TVA SLAA  + +     APP  A AKNGDTH+ GQ  E+T+DCN++TLLVNGT N
Sbjct  1    MKWTTVAGSLAACALAVLAGAVAPPRVAQAKNGDTHIIGQDTEQTIDCNDATLLVNGTGN  60

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
            +VTALG C+AVTVMGSSNTV+AD++ +DITVYG+D+TVF+++G PF+WDRGRELGM NRL
Sbjct  61   VVTALGNCYAVTVMGSSNTVIADSVSHDITVYGYDQTVFYKSGQPFLWDRGRELGMTNRL  120

Query  121  QRV  123
            Q+V
Sbjct  121  QQV  123


>gi|296168531|ref|ZP_06850336.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896673|gb|EFG76311.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=122

 Score =  166 bits (421),  Expect = 8e-40, Method: Compositional matrix adjust.
 Identities = 87/123 (71%), Positives = 103/123 (84%), Gaps = 3/123 (2%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            + W TVA SLA  VIT+A        AAHAKNGDTHV G+GIE+TLDCN++TLLVNGT+N
Sbjct  1    MNWTTVAGSLATCVITVAAVPVP---AAHAKNGDTHVIGEGIEQTLDCNDATLLVNGTRN  57

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
             VTALG C+AVTVMGSSNTVVAD++ +DITVYG+D+TVF+ NG PF+WDRGRELGM NRL
Sbjct  58   NVTALGNCYAVTVMGSSNTVVADSVSHDITVYGYDQTVFYHNGSPFLWDRGRELGMTNRL  117

Query  121  QRV  123
            Q+V
Sbjct  118  QQV  120


>gi|342858835|ref|ZP_08715489.1| hypothetical protein MCOL_08163 [Mycobacterium colombiense CECT 
3035]
 gi|342133076|gb|EGT86279.1| hypothetical protein MCOL_08163 [Mycobacterium colombiense CECT 
3035]
Length=121

 Score =  162 bits (410),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 77/123 (63%), Positives = 100/123 (82%), Gaps = 4/123 (3%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            +KW TVA SLA    T  +A+ A P  A AKNGDTHV G+ IE+T+DCN++TL+VNG+  
Sbjct  1    MKWTTVAGSLA----TCVIAVVALPGIAQAKNGDTHVIGEDIEQTVDCNDATLMVNGSGI  56

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
             VTALG C+AVTVMGSSNTV+AD++ +DITVYG+++TVF+++G P +WDRGRELGM NRL
Sbjct  57   TVTALGNCYAVTVMGSSNTVIADSVSHDITVYGYNQTVFYKSGQPALWDRGRELGMTNRL  116

Query  121  QRV  123
            Q+V
Sbjct  117  QQV  119


>gi|118472828|ref|YP_885780.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174115|gb|ABK75011.1| probable conserved transmembrane protein [Mycobacterium smegmatis 
str. MC2 155]
Length=125

 Score =  154 bits (388),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 74/123 (61%), Positives = 91/123 (74%), Gaps = 0/123 (0%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            + W  V     + VI + +ALA   P A AKNGDTH+TGQG+ERTLDCN +TL V GT N
Sbjct  1    MHWIAVGRIAVSCVIALPMALAVGLPTAGAKNGDTHITGQGVERTLDCNNATLFVTGTGN  60

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
             + A+GTCWAVTV GSSN VVA+ +INDITVYG+D+TVF++NG P + DRGREL M N +
Sbjct  61   HINAMGTCWAVTVQGSSNVVVAENVINDITVYGYDQTVFYKNGQPAVIDRGRELQMTNVI  120

Query  121  QRV  123
             RV
Sbjct  121  DRV  123


>gi|108797953|ref|YP_638150.1| hypothetical protein Mmcs_0980 [Mycobacterium sp. MCS]
 gi|119867050|ref|YP_937002.1| hypothetical protein Mkms_0998 [Mycobacterium sp. KMS]
 gi|126433616|ref|YP_001069307.1| hypothetical protein Mjls_1008 [Mycobacterium sp. JLS]
 gi|108768372|gb|ABG07094.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
 gi|119693139|gb|ABL90212.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
 gi|126233416|gb|ABN96816.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=125

 Score =  152 bits (384),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 68/98 (70%), Positives = 81/98 (83%), Gaps = 0/98 (0%)

Query  26   PAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTI  85
            P+AHAKNGDTH+TG G+ +T+DC +S L VNG  N V ALGTC+AVT+ GS N VVAD +
Sbjct  26   PSAHAKNGDTHITGTGLSQTIDCRDSVLHVNGNGNQVYALGTCYAVTMQGSGNLVVADNV  85

Query  86   INDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV  123
            INDITVYGWD+TV ++NGDP IWDRGRELGM NR+ RV
Sbjct  86   INDITVYGWDQTVMYKNGDPIIWDRGRELGMTNRINRV  123


>gi|333989332|ref|YP_004521946.1| transmembrane protein [Mycobacterium sp. JDM601]
 gi|333485300|gb|AEF34692.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=125

 Score =  150 bits (378),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 73/123 (60%), Positives = 90/123 (74%), Gaps = 0/123 (0%)

Query  1    VKWNTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQN  60
            +KW T+ A+L      +A  LA   P+AHA  GDTHV G    RTLDCN  TL +NG  N
Sbjct  1    MKWTTLGAALLCVTGGLASGLAGGTPSAHAVPGDTHVYGVHETRTLDCNGGTLFINGVNN  60

Query  61   IVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRL  120
             V A+G CWAVT+ GS NTV+A+TIIND+TVYG+D+TV++ NGDP ++DRGRELGM NRL
Sbjct  61   TVHAMGNCWAVTLQGSQNTVIAETIINDVTVYGYDQTVYYHNGDPLLFDRGRELGMTNRL  120

Query  121  QRV  123
            QRV
Sbjct  121  QRV  123


>gi|315446010|ref|YP_004078889.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
 gi|315264313|gb|ADU01055.1| hypothetical protein Mspyr1_45000 [Mycobacterium sp. Spyr1]
Length=125

 Score =  146 bits (369),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 64/98 (66%), Positives = 79/98 (81%), Gaps = 0/98 (0%)

Query  26   PAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTI  85
            P A A+NGDTH+TG G+ RT+DC +STL VNG  N V A+G C+AVTV GSSN VV D++
Sbjct  26   PVAQAENGDTHITGVGVVRTIDCKDSTLFVNGNGNQVFAIGNCYAVTVQGSSNLVVVDSV  85

Query  86   INDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV  123
             NDITVYGWD+ VF++NG PF+WDRGRELGM N++ RV
Sbjct  86   ANDITVYGWDQKVFYKNGSPFVWDRGRELGMTNQINRV  123


>gi|254822764|ref|ZP_05227765.1| hypothetical protein MintA_22734 [Mycobacterium intracellulare 
ATCC 13950]
Length=116

 Score =  146 bits (368),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 66/99 (67%), Positives = 83/99 (84%), Gaps = 0/99 (0%)

Query  25   PPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADT  84
            P  A AKNGDTHV G+ +E+T+DCN++TLLVNG+   VTALG C+AVTVMGSSN V+AD+
Sbjct  16   PGLAQAKNGDTHVIGEDMEQTVDCNDATLLVNGSFLTVTALGNCYAVTVMGSSNVVIADS  75

Query  85   IINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV  123
            + +DITVYG D+TV ++ G PF+WDRGRELGM NRLQ+V
Sbjct  76   VSHDITVYGHDQTVLYKGGQPFLWDRGRELGMTNRLQQV  114


>gi|120402286|ref|YP_952115.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955104|gb|ABM12109.1| putative conserved transmembrane protein [Mycobacterium vanbaalenii 
PYR-1]
Length=110

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 73/104 (71%), Positives = 87/104 (84%), Gaps = 0/104 (0%)

Query  20   ALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNT  79
            ALA+  P A AKNGDTH+TG G+E+T+DCNESTL+V G  N + ALGTCWAVTV GSSN 
Sbjct  5    ALASVNPVAQAKNGDTHITGIGVEQTIDCNESTLIVLGNNNRINALGTCWAVTVQGSSNV  64

Query  80   VVADTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV  123
            VVAD ++NDITVYGWD+TVF++NG P +WDRGRELGM NR+ RV
Sbjct  65   VVADNVVNDITVYGWDQTVFYKNGAPIVWDRGRELGMTNRIDRV  108


>gi|169630932|ref|YP_001704581.1| hypothetical protein MAB_3853 [Mycobacterium abscessus ATCC 19977]
 gi|169242899|emb|CAM63927.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=126

 Score =  134 bits (336),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 55/94 (59%), Positives = 80/94 (86%), Gaps = 0/94 (0%)

Query  30   AKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDI  89
            AKNGDTH+T  G+  T+DCN+ST+ VNG+QN++TALG+C+A++V GS NT++AD ++NDI
Sbjct  31   AKNGDTHITQYGLVTTIDCNDSTVFVNGSQNVITALGSCYAISVQGSHNTIIADNVVNDI  90

Query  90   TVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV  123
            TVYG+++ V +++G+P I DRGRELGM+N + RV
Sbjct  91   TVYGFNQKVLYKSGEPAIIDRGRELGMMNFIDRV  124


>gi|145225658|ref|YP_001136336.1| hypothetical protein Mflv_5082 [Mycobacterium gilvum PYR-GCK]
 gi|145218144|gb|ABP47548.1| putative conserved transmembrane protein [Mycobacterium gilvum 
PYR-GCK]
Length=104

 Score =  132 bits (333),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 66/101 (66%), Positives = 81/101 (81%), Gaps = 0/101 (0%)

Query  23   APPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVA  82
            +  P A A+NGDTHVTG G+ RT+DC +STL VNG  N V A+G C+AVTV GSSN VVA
Sbjct  2    STSPLASAENGDTHVTGVGVVRTVDCRDSTLFVNGNGNQVFAIGNCYAVTVQGSSNLVVA  61

Query  83   DTIINDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQRV  123
            D ++NDITVYGWD+ VF++NG PF+WDRGRELGM N++ RV
Sbjct  62   DNVVNDITVYGWDQKVFYKNGAPFVWDRGRELGMTNQINRV  102


>gi|289744402|ref|ZP_06503780.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289756767|ref|ZP_06516145.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294993056|ref|ZP_06798747.1| hypothetical protein Mtub2_00745 [Mycobacterium tuberculosis 
210]
 gi|289684930|gb|EFD52418.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289712331|gb|EFD76343.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326905099|gb|EGE52032.1| conserved threonine rich protein [Mycobacterium tuberculosis 
W-148]
Length=165

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 48/83 (58%), Gaps = 5/83 (6%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G+ N +T  GTC  VTV G++N +  D I   + V G D+TV 
Sbjct  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDKTVT  145

Query  100  FRNGDPFIWDRGRELGMVNRLQR  122
            ++NGDP I +    LG  NR+ +
Sbjct  146  YKNGDPTIDN----LGAGNRINK  164


>gi|340625698|ref|YP_004744150.1| hypothetical protein MCAN_06801 [Mycobacterium canettii CIPT 
140010059]
 gi|340003888|emb|CCC43020.1| conserved hypothetical threonine rich protein [Mycobacterium 
canettii CIPT 140010059]
Length=166

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G+ N +T  GTC  VTV G++N +  D I   + V G D TV 
Sbjct  87   GTTATLDCADGKSLNVAGSNNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  146

Query  100  FRNGDPFIWDRGRELGMVNRLQR  122
            ++NGDP I +    LG  NR+ +
Sbjct  147  YKNGDPTIDN----LGAGNRINK  165


>gi|339293710|gb|AEJ45821.1| conserved threonine rich protein [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297349|gb|AEJ49459.1| conserved threonine rich protein [Mycobacterium tuberculosis 
CCDC5180]
Length=102

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G+ N +T  GTC  VTV G++N +  D I   + V G D+TV 
Sbjct  23   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDKTVT  82

Query  100  FRNGDPFIWDRGRELGMVNRLQR  122
            ++NGDP I      LG  NR+ +
Sbjct  83   YKNGDPTI----DNLGAGNRINK  101


>gi|15607819|ref|NP_215193.1| putative threonine rich protein [Mycobacterium tuberculosis H37Rv]
 gi|15840082|ref|NP_335119.1| hypothetical protein MT0707 [Mycobacterium tuberculosis CDC1551]
 gi|31791863|ref|NP_854356.1| putative threonine rich protein [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 Length=165

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 47/83 (57%), Gaps = 5/83 (6%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G+ N +T  GTC  VTV G++N +  D I   + V G D TV 
Sbjct  86   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  145

Query  100  FRNGDPFIWDRGRELGMVNRLQR  122
            ++NGDP I +    LG  NR+ +
Sbjct  146  YKNGDPTIDN----LGAGNRINK  164


>gi|254231000|ref|ZP_04924327.1| conserved hypothetical threonine rich protein [Mycobacterium 
tuberculosis C]
 gi|124600059|gb|EAY59069.1| conserved hypothetical threonine rich protein [Mycobacterium 
tuberculosis C]
Length=102

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 46/83 (56%), Gaps = 5/83 (6%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G+ N +T  GTC  VTV G++N +  D I   + V G D TV 
Sbjct  23   GTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRIDERLVVVGLDNTVT  82

Query  100  FRNGDPFIWDRGRELGMVNRLQR  122
            ++NGDP I      LG  NR+ +
Sbjct  83   YKNGDPTI----DNLGAGNRINK  101


>gi|118465299|ref|YP_883630.1| hypothetical protein MAV_4496 [Mycobacterium avium 104]
 gi|118166586|gb|ABK67483.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=144

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 29/85 (35%), Positives = 47/85 (56%), Gaps = 5/85 (5%)

Query  41   GIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC    +L V G+ N +T  GTC + TV G++N +  D +   ITV G + T+ 
Sbjct  64   GTTTTLDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTIT  123

Query  100  FRNGDPFIWDRGRELGMVNRLQRVG  124
            +++GDP +     ++G  N + + G
Sbjct  124  YKDGDPKV----DKIGQSNTINKGG  144


>gi|289568620|ref|ZP_06448847.1| conserved threonine rich protein [Mycobacterium tuberculosis 
T17]
 gi|289542374|gb|EFD46022.1| conserved threonine rich protein [Mycobacterium tuberculosis 
T17]
Length=167

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 38/97 (40%), Positives = 51/97 (53%), Gaps = 6/97 (6%)

Query  28   AHAKNGDTHVTGQ-GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTI  85
            A  + GD    G  G   TLDC +  +L V G+ N +T  GTC  VTV G++N +  D I
Sbjct  74   ASIQIGDMLTYGSIGTTATLDCADGKSLNVAGSDNTLTVNGTCETVTVGGANNKIAFDRI  133

Query  86   INDITVYGWDETVFFRNGDPFIWDRGRELGMVNRLQR  122
               + V G D TV ++NGDP I      LG  NR+ +
Sbjct  134  DERLVVVGLDNTVTYKNGDPTI----DNLGAGNRINK  166


>gi|41410235|ref|NP_963071.1| hypothetical protein MAP4137c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254776931|ref|ZP_05218447.1| hypothetical protein MaviaA2_20001 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41399069|gb|AAS06687.1| hypothetical protein MAP_4137c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=161

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 29/85 (35%), Positives = 47/85 (56%), Gaps = 5/85 (5%)

Query  41   GIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC    +L V G+ N +T  GTC + TV G++N +  D +   ITV G + T+ 
Sbjct  81   GTTTTLDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTIT  140

Query  100  FRNGDPFIWDRGRELGMVNRLQRVG  124
            +++GDP +     ++G  N + + G
Sbjct  141  YKDGDPKV----DKIGQSNTINKGG  161


>gi|240171871|ref|ZP_04750530.1| hypothetical protein MkanA1_21325 [Mycobacterium kansasii ATCC 
12478]
Length=128

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 37/115 (33%), Positives = 52/115 (46%), Gaps = 13/115 (11%)

Query  9    SLAAGVITIAVALAAP-----------PPAAHAKNGDTHVTGQGIERTLDC-NESTLLVN  56
             L  G + I  AL  P           PP A   N     T  G   TLDC    +L + 
Sbjct  7    QLLIGSMVIVAALGVPGCHKKQQAVDKPPVAEMNNTINDGT-FGKTETLDCAGGKSLNIG  65

Query  57   GTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            G++N +T  G C  V + G  N +  + I  ++TV G + TV +R+GDP + D G
Sbjct  66   GSKNTLTVKGRCAKVIIGGDDNKISFENIETELTVAGLNNTVTYRDGDPSVADLG  120


>gi|306782942|ref|ZP_07421264.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306787310|ref|ZP_07425632.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306791863|ref|ZP_07430165.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 7 more sequence titles
 Length=220

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+ST+ V+G  N V   G C 
Sbjct  112  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSTVSVSGMSNTVVITGHCT  171

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  172  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  212


>gi|308369363|ref|ZP_07417492.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308375123|ref|ZP_07442788.2| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308327865|gb|EFP16716.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308347376|gb|EFP36227.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
Length=217

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+ST+ V+G  N V   G C 
Sbjct  109  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSTVSVSGMSNTVVITGHCT  168

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  169  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  209


>gi|240173240|ref|ZP_04751898.1| hypothetical protein MkanA1_28266 [Mycobacterium kansasii ATCC 
12478]
Length=244

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 31/89 (35%), Positives = 46/89 (52%), Gaps = 6/89 (6%)

Query  23   APPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVA  82
            APPP      G+  V+G    +TLDCN+S + ++G  N V   G C ++TV G  NTV  
Sbjct  154  APPPG-----GNLSVSGLNENKTLDCNDSVVEISGMSNTVVITGHCASLTVSGIENTVTV  208

Query  83   DTIINDITVYGWDETVFFRNGDPFIWDRG  111
            D  ++ I   G +  V + +G P +   G
Sbjct  209  D-AVDTIEASGINNKVTYHSGSPKVSKSG  236


>gi|308377389|ref|ZP_07668501.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308355951|gb|EFP44802.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
Length=283

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAK------NGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+ST+ V+G  N V   G C 
Sbjct  175  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSTVSVSGMSNTVVITGHCT  234

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  235  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  275


>gi|31791493|ref|NP_853986.1| hypothetical protein Mb0322c [Mycobacterium bovis AF2122/97]
 gi|121636229|ref|YP_976452.1| hypothetical protein BCG_0354c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224988702|ref|YP_002643389.1| hypothetical protein JTY_0324 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31617079|emb|CAD93186.1| POSSIBLE CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491876|emb|CAL70339.1| Possible conserved membrane protein [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|224771815|dbj|BAH24621.1| hypothetical protein JTY_0324 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341600245|emb|CCC62915.1| possible conserved membrane protein [Mycobacterium bovis BCG 
str. Moreau RDJ]
Length=220

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 33/102 (33%), Positives = 52/102 (51%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+S + V+G  N V   G C 
Sbjct  112  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT  171

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V AD+ ++ I   G++  V + +G P I + G
Sbjct  172  SLTVSGMRNSVTADS-VDTIEAAGFNNEVTYHSGSPKISNAG  212


>gi|108797952|ref|YP_638149.1| hypothetical protein Mmcs_0979 [Mycobacterium sp. MCS]
 gi|108768371|gb|ABG07093.1| conserved hypothetical protein [Mycobacterium sp. MCS]
Length=136

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 47/85 (56%), Gaps = 5/85 (5%)

Query  41   GIERTLDCNESTLL-VNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G    +DC +   L V G+ N +T  GTC  V + G+ NT+  + +  +ITV G + T+ 
Sbjct  56   GTTAEVDCADGKALNVGGSNNKLTVTGTCANVNIGGTDNTISFERVDKEITVVGLNNTIT  115

Query  100  FRNGDPFIWDRGRELGMVNRLQRVG  124
            +R+GDP I D    LG  N++ + G
Sbjct  116  YRDGDPKIDD----LGSNNKITKQG  136


>gi|119867049|ref|YP_937001.1| hypothetical protein Mkms_0997 [Mycobacterium sp. KMS]
 gi|126433615|ref|YP_001069306.1| hypothetical protein Mjls_1007 [Mycobacterium sp. JLS]
 gi|119693138|gb|ABL90211.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126233415|gb|ABN96815.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=141

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 29/80 (37%), Positives = 46/80 (58%), Gaps = 5/80 (6%)

Query  46   LDCNESTLL-VNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGD  104
            +DC +   L V G+ N +T  GTC  V + G+ NT+  + +  +ITV G + T+ +R+GD
Sbjct  66   VDCADGKALNVGGSNNKLTVTGTCANVNIGGTDNTISFERVDKEITVVGLNNTITYRDGD  125

Query  105  PFIWDRGRELGMVNRLQRVG  124
            P I D    LG  N++ + G
Sbjct  126  PKIDD----LGSNNKITKQG  141


>gi|336460543|gb|EGO39436.1| Protein of unknown function (DUF3060) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=160

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 28/81 (35%), Positives = 46/81 (57%), Gaps = 5/81 (6%)

Query  45   TLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNG  103
            TLDC    +L V G+ N +T  GTC + TV G++N +  D +   ITV G + T+ +++G
Sbjct  84   TLDCAGGKSLNVGGSDNTLTVTGTCESATVSGTNNKITFDKVNTRITVLGMNNTITYKDG  143

Query  104  DPFIWDRGRELGMVNRLQRVG  124
            DP +     ++G  N + + G
Sbjct  144  DPKV----DKIGQSNTINKGG  160


>gi|342858836|ref|ZP_08715490.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT 
3035]
 gi|342133077|gb|EGT86280.1| hypothetical protein MCOL_08168 [Mycobacterium colombiense CECT 
3035]
Length=161

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 27/74 (37%), Positives = 42/74 (57%), Gaps = 1/74 (1%)

Query  41   GIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G+ N +T  GTC   TV G++N +  D +   ITV G + T+ 
Sbjct  81   GTTTTLDCASGKSLNVGGSDNNLTVTGTCETATVSGTNNKITFDKVNTRITVLGMNNTIT  140

Query  100  FRNGDPFIWDRGRE  113
            +++GDP +   G+ 
Sbjct  141  YKDGDPKVDKIGQS  154


>gi|118472451|ref|YP_885779.1| hypothetical protein MSMEG_1393 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173738|gb|ABK74634.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=136

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 26/67 (39%), Positives = 39/67 (59%), Gaps = 1/67 (1%)

Query  46   LDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGD  104
            +DC +  +L V G  N +T  GTC  V + GS N +  + I  D+TV G + T+ +R+GD
Sbjct  62   IDCADGKSLTVGGANNTLTVKGTCANVNIGGSDNKITFEKIDKDLTVVGLNNTITYRDGD  121

Query  105  PFIWDRG  111
            P I + G
Sbjct  122  PKINNTG  128


>gi|183981029|ref|YP_001849320.1| hypothetical protein MMAR_1008 [Mycobacterium marinum M]
 gi|183174355|gb|ACC39465.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=158

 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 43/72 (60%), Gaps = 1/72 (1%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G++N +T  GTC  VT+ G++N +  D I   +TV G D T+ 
Sbjct  79   GTTATLDCADGKSLNVAGSENNLTVTGTCATVTIGGTNNKITFDKIDQRLTVLGIDNTIT  138

Query  100  FRNGDPFIWDRG  111
            ++ G+P + + G
Sbjct  139  YKAGEPKVDNIG  150


>gi|289748798|ref|ZP_06508176.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689385|gb|EFD56814.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=211

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+S + V+G  N V   G C 
Sbjct  103  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT  162

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  163  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  203


>gi|289748797|ref|ZP_06508175.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289689384|gb|EFD56813.1| conserved membrane protein [Mycobacterium tuberculosis T92]
Length=220

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+S + V+G  N V   G C 
Sbjct  112  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT  171

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  172  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  212


>gi|15607455|ref|NP_214828.1| hypothetical protein Rv0314c [Mycobacterium tuberculosis H37Rv]
 gi|148660080|ref|YP_001281603.1| hypothetical protein MRA_0323 [Mycobacterium tuberculosis H37Ra]
 gi|148821510|ref|YP_001286264.1| hypothetical protein TBFG_10319 [Mycobacterium tuberculosis F11]
 49 more sequence titles
 Length=220

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+S + V+G  N V   G C 
Sbjct  112  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT  171

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  172  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  212


>gi|308395108|ref|ZP_07491908.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|308367498|gb|EFP56349.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
Length=217

 Score = 50.4 bits (119),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+S + V+G  N V   G C 
Sbjct  109  TPSVSRAVPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT  168

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  169  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  209


>gi|340625345|ref|YP_004743797.1| hypothetical protein MCAN_03161 [Mycobacterium canettii CIPT 
140010059]
 gi|340003535|emb|CCC42656.1| putative conserved membrane protein [Mycobacterium canettii CIPT 
140010059]
Length=220

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 32/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query  16   TIAVALAAPPPAAHAKN------GDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCW  69
            T +V+ A P P A              V+G  + RT+ CN+S + V+G  N V   G C 
Sbjct  112  TPSVSRAIPTPTAQPATTLPPAGASLSVSGVNVNRTIACNDSIVSVSGMSNTVVITGHCT  171

Query  70   AVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            ++TV G  N+V  D+ ++ I   G++  V + +G P I + G
Sbjct  172  SLTVSGMRNSVTVDS-VDTIEAAGFNNEVTYHSGSPKISNAG  212


>gi|240167676|ref|ZP_04746335.1| hypothetical protein MkanA1_00070 [Mycobacterium kansasii ATCC 
12478]
Length=88

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/73 (36%), Positives = 44/73 (61%), Gaps = 1/73 (1%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G   TLDC +  +L V G++N +T  GTC  VT+ G++N +  D I   ++V G + T+ 
Sbjct  8    GTTATLDCADGKSLNVAGSENTLTVNGTCSTVTIGGTNNKITFDKIDQHLSVLGLNNTIT  67

Query  100  FRNGDPFIWDRGR  112
            +++GDP + + G 
Sbjct  68   YKDGDPKVDNIGS  80


>gi|254822765|ref|ZP_05227766.1| hypothetical protein MintA_22739 [Mycobacterium intracellulare 
ATCC 13950]
Length=150

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (55%), Gaps = 1/75 (1%)

Query  40   QGIERTLDC-NESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETV  98
             G    LDC    +L V G+ N +T  G+C  V + G++N +  D +   ITV G + T+
Sbjct  69   MGTTTNLDCATGKSLNVAGSDNTLTVTGSCSTVNIGGTNNKITLDKVEKRITVLGMNNTI  128

Query  99   FFRNGDPFIWDRGRE  113
             +++GDP + + G +
Sbjct  129  TYKDGDPKVDNLGSD  143


>gi|333990177|ref|YP_004522791.1| hypothetical protein JDM601_1537 [Mycobacterium sp. JDM601]
 gi|333486145|gb|AEF35537.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=199

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 33/108 (31%), Positives = 51/108 (48%), Gaps = 1/108 (0%)

Query  4    NTVAASLAAGVITIAVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVT  63
            +T A + +  V  +  A A+P      +     V+G G ++TL C  + + V+G +N +T
Sbjct  85   STAAPTPSRSVPVVPPASASPANPTPGRADTITVSGAGQDKTLACAGNQVSVSGVRNTIT  144

Query  64   ALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
              G C  +TV G  N +  D     IT  G D  V +R GDP +   G
Sbjct  145  LTGRCAGLTVSGIGNVITVD-FTPAITTSGVDNRVTYRFGDPEVSTSG  191


>gi|333989331|ref|YP_004521945.1| hypothetical protein JDM601_0691 [Mycobacterium sp. JDM601]
 gi|333485299|gb|AEF34691.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=134

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/72 (34%), Positives = 40/72 (56%), Gaps = 1/72 (1%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G    +DC +  +L V G+ N +T  G C AV V G+ N +  + +   +T+ G + +V 
Sbjct  54   GTTSAVDCADGKSLNVAGSNNRLTVRGRCEAVNVAGADNRITVERVDKSLTITGLNNSVA  113

Query  100  FRNGDPFIWDRG  111
            +R G+P + DRG
Sbjct  114  YRAGEPRVDDRG  125


>gi|108797854|ref|YP_638051.1| hypothetical protein Mmcs_0879 [Mycobacterium sp. MCS]
 gi|119866948|ref|YP_936900.1| hypothetical protein Mkms_0896 [Mycobacterium sp. KMS]
 gi|126433494|ref|YP_001069185.1| hypothetical protein Mjls_0885 [Mycobacterium sp. JLS]
 gi|108768273|gb|ABG06995.1| putative conserved membrane protein [Mycobacterium sp. MCS]
 gi|119693037|gb|ABL90110.1| putative conserved membrane protein [Mycobacterium sp. KMS]
 gi|126233294|gb|ABN96694.1| putative conserved membrane protein [Mycobacterium sp. JLS]
Length=233

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 31/90 (35%), Positives = 48/90 (54%), Gaps = 8/90 (8%)

Query  18   AVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSS  77
            AVA A P        G   V+G   ++ + C++S + V+G  N VT  G C +VTV G  
Sbjct  141  AVAQAPP-------GGQFSVSGVEGDKRVACDDSLISVSGVSNTVTITGHCVSVTVSGVG  193

Query  78   NTVVADTIINDITVYGWDETVFFRNGDPFI  107
            N V+ ++  + I+  G++  V F+ GDP I
Sbjct  194  NEVIVES-ADRISASGFENRVTFQTGDPQI  222


>gi|118469764|ref|YP_889562.1| hypothetical protein MSMEG_5317 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118171051|gb|ABK71947.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=248

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 28/87 (33%), Positives = 48/87 (56%), Gaps = 5/87 (5%)

Query  36   HVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWD  95
            +V G   +R + C+  T++V+G +N +T  G C AVT+ G  N +  D   + I V G++
Sbjct  164  NVAGASNDREVTCDGGTVMVSGVENTITITGHCAAVTISGIRNVIEVDE-ADTIGVSGFE  222

Query  96   ETVFFRNGDPFIWDRGRELGMVNRLQR  122
              V + +G+P I     + GM N ++R
Sbjct  223  NRVTYSSGEPEIT----KSGMDNTVER  245


>gi|342859208|ref|ZP_08715862.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT 
3035]
 gi|342133449|gb|EGT86652.1| hypothetical protein MCOL_10028 [Mycobacterium colombiense CECT 
3035]
Length=227

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 28/94 (30%), Positives = 48/94 (52%), Gaps = 7/94 (7%)

Query  18   AVALAAPPPAAHAKNGDTHVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSS  77
            + + AAPP        +  V G    RT+ CN++ + V+G  N VT  G C +++V G  
Sbjct  133  STSPAAPP------GTELSVAGINENRTITCNDNIVSVSGVSNTVTITGHCTSLSVSGVQ  186

Query  78   NTVVADTIINDITVYGWDETVFFRNGDPFIWDRG  111
            N++  +  ++ I   G+D  V + +G P I + G
Sbjct  187  NSITVEA-VDSIEASGFDNKVTYHSGAPKISNSG  219


>gi|120402285|ref|YP_952114.1| hypothetical protein Mvan_1274 [Mycobacterium vanbaalenii PYR-1]
 gi|119955103|gb|ABM12108.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=133

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 24/72 (34%), Positives = 41/72 (57%), Gaps = 1/72 (1%)

Query  41   GIERTLDCNE-STLLVNGTQNIVTALGTCWAVTVMGSSNTVVADTIINDITVYGWDETVF  99
            G    +DC +  +L V G+ N +T  GTC  V + G+ N +  + +  +++V G + TV 
Sbjct  54   GTTADIDCADGKSLNVGGSNNTLTVKGTCANVNIGGADNKISFERVDAELSVVGLNNTVT  113

Query  100  FRNGDPFIWDRG  111
            +R+GDP + D G
Sbjct  114  YRDGDPKVNDTG  125


>gi|183980593|ref|YP_001848884.1| hypothetical protein MMAR_0565 [Mycobacterium marinum M]
 gi|183173919|gb|ACC39029.1| conserved membrane protein [Mycobacterium marinum M]
Length=239

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 32/91 (36%), Positives = 47/91 (52%), Gaps = 2/91 (2%)

Query  22   AAPPPAAHAKNGDT-HVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTV  80
            A P  +A    G T  V G    +T+ CN++ + V+G  N VT  G C +V+V G  NTV
Sbjct  142  AGPSTSAGPPAGSTISVVGVNQSQTITCNDNIVNVSGMSNTVTITGHCASVSVSGLQNTV  201

Query  81   VADTIINDITVYGWDETVFFRNGDPFIWDRG  111
              +T  + IT  G +  V +++G P I   G
Sbjct  202  TVET-ADRITASGLNNKVTYQSGSPKISKSG  231


>gi|118619805|ref|YP_908137.1| hypothetical protein MUL_4742 [Mycobacterium ulcerans Agy99]
 gi|118571915|gb|ABL06666.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=242

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 32/91 (36%), Positives = 47/91 (52%), Gaps = 2/91 (2%)

Query  22   AAPPPAAHAKNGDT-HVTGQGIERTLDCNESTLLVNGTQNIVTALGTCWAVTVMGSSNTV  80
            A P  +A    G T  V G    +T+ CN++ + V+G  N VT  G C +V+V G  NTV
Sbjct  145  AGPSTSAGPPAGSTISVVGVNQSQTITCNDNIVNVSGMSNTVTITGHCASVSVSGLQNTV  204

Query  81   VADTIINDITVYGWDETVFFRNGDPFIWDRG  111
              +T  + IT  G +  V +++G P I   G
Sbjct  205  TVET-ADRITASGLNNKVTYQSGSPKISKSG  234



Lambda     K      H
   0.319    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130872486112




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40