BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0689c Length=84 Score E Sequences producing significant alignments: (Bits) Value gi|15607829|ref|NP_215203.1| hypothetical protein Rv0689c [Mycob... 165 2e-39 gi|145225640|ref|YP_001136318.1| glyoxalase/bleomycin resistance... 75.1 3e-12 gi|315445993|ref|YP_004078872.1| hypothetical protein Mspyr1_448... 74.7 4e-12 gi|118472958|ref|YP_885800.1| glyoxalase [Mycobacterium smegmati... 71.6 3e-11 gi|120402303|ref|YP_952132.1| glyoxalase/bleomycin resistance pr... 71.2 5e-11 gi|108797969|ref|YP_638166.1| glyoxalase/bleomycin resistance pr... 65.5 2e-09 gi|119867066|ref|YP_937018.1| glyoxalase/bleomycin resistance pr... 65.5 3e-09 gi|343925817|ref|ZP_08765332.1| hypothetical protein GOALK_050_0... 58.9 3e-07 gi|284989099|ref|YP_003407653.1| glyoxalase/bleomycin resistance... 52.0 3e-05 gi|262200852|ref|YP_003272060.1| glyoxalase/bleomycin resistance... 50.1 1e-04 gi|331695308|ref|YP_004331547.1| glyoxalase/bleomycin resistance... 38.1 0.50 gi|333921155|ref|YP_004494736.1| glyoxalase/bleomycin resistance... 37.4 0.83 gi|300782044|ref|YP_003762335.1| glyoxalase/bleomycin resistance... 37.4 0.84 gi|302531473|ref|ZP_07283815.1| predicted protein [Streptomyces ... 36.6 1.3 gi|148557481|ref|YP_001265063.1| glyoxalase/bleomycin resistance... 35.4 2.7 >gi|15607829|ref|NP_215203.1| hypothetical protein Rv0689c [Mycobacterium tuberculosis H37Rv] gi|15840092|ref|NP_335129.1| hypothetical protein MT0717 [Mycobacterium tuberculosis CDC1551] gi|31791873|ref|NP_854366.1| hypothetical protein Mb0708c [Mycobacterium bovis AF2122/97] 74 more sequence titlesLength=84 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/84 (99%), Positives = 84/84 (100%), Gaps = 0/84 (0%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALAEP 60 +LGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALAEP Sbjct 1 MLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALAEP 60 Query 61 SRQPDDMSAECADDQGARCHLGQL 84 SRQPDDMSAECADDQGARCHLGQL Sbjct 61 SRQPDDMSAECADDQGARCHLGQL 84 >gi|145225640|ref|YP_001136318.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium gilvum PYR-GCK] gi|145218126|gb|ABP47530.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium gilvum PYR-GCK] Length=421 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 51/86 (60%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA 58 VL WT +PGRV DGW G H M+ +G + DIDAAVARVR AG + Sbjct 336 VLFWTYEPGRVDDGWGVVGAHPMSGAAGGHVEAVTVPMWTVADIDAAVARVREAGGTVIE 395 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 EPS+QP SA C DDQGAR +LG+ Sbjct 396 EPSQQPYGKSALCTDDQGARFYLGEF 421 >gi|315445993|ref|YP_004078872.1| hypothetical protein Mspyr1_44830 [Mycobacterium sp. Spyr1] gi|315264296|gb|ADU01038.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1] Length=421 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 51/86 (60%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA 58 VL WT +PGRV DGW G H M+ +G + DIDAAVARVR AG + Sbjct 336 VLFWTYEPGRVDDGWGVVGAHPMSGAAGGHVEAVTVPMWTVADIDAAVARVREAGGTVIE 395 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 EPS+QP SA C DDQGAR +LG+ Sbjct 396 EPSQQPYGKSALCTDDQGARFYLGEF 421 >gi|118472958|ref|YP_885800.1| glyoxalase [Mycobacterium smegmatis str. MC2 155] gi|118174245|gb|ABK75141.1| glyoxalase family protein [Mycobacterium smegmatis str. MC2 155] Length=427 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/86 (46%), Positives = 50/86 (59%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA 58 VL WT +PGR+ADGW M+ +G + DIDAAV RVR AG ++ Sbjct 342 VLSWTFEPGRIADGWGVQNCQPMSGMAGGSDRATTVPMWTVADIDAAVTRVREAGGTVIS 401 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 P+RQP + AEC DDQGAR +LG+ Sbjct 402 APARQPYGLMAECTDDQGARFYLGEF 427 >gi|120402303|ref|YP_952132.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium vanbaalenii PYR-1] gi|119955121|gb|ABM12126.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium vanbaalenii PYR-1] Length=377 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/86 (46%), Positives = 52/86 (61%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA 58 +L WT +PGR+ DGW G H M+ +G ++ DIDAAV+RVR+AG + Sbjct 292 LLFWTYEPGRIDDGWGVVGAHPMSGAAGGNASAVTVPMWTVDDIDAAVSRVRSAGGTVIE 351 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 EPS+Q SA C DDQG R +LG+L Sbjct 352 EPSQQSYGKSALCTDDQGTRFYLGEL 377 >gi|108797969|ref|YP_638166.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium sp. MCS] gi|108768388|gb|ABG07110.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium sp. MCS] Length=372 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/86 (46%), Positives = 44/86 (52%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA-- 58 VL WT +PGR+ DGW M G S DID AV RV AG Sbjct 287 VLSWTFEPGRIEDGWAVNECRPMTGIGGGSDRSVTVPMWTVADIDDAVRRVTEAGGSVRQ 346 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 EP+RQP + AEC DDQGAR +LGQ Sbjct 347 EPNRQPYGLMAECVDDQGARFYLGQF 372 >gi|119867066|ref|YP_937018.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium sp. KMS] gi|126433632|ref|YP_001069323.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium sp. JLS] gi|119693155|gb|ABL90228.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium sp. KMS] gi|126233432|gb|ABN96832.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium sp. JLS] Length=418 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/86 (46%), Positives = 44/86 (52%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA-- 58 VL WT +PGR+ DGW M G S DID AV RV AG Sbjct 333 VLSWTFEPGRIEDGWAVNECRPMTGIGGGSDRSVTVPMWTVADIDDAVRRVTEAGGSVRQ 392 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 EP+RQP + AEC DDQGAR +LGQ Sbjct 393 EPNRQPYGLMAECVDDQGARFYLGQF 418 >gi|343925817|ref|ZP_08765332.1| hypothetical protein GOALK_050_01120 [Gordonia alkanivorans NBRC 16433] gi|343764168|dbj|GAA12258.1| hypothetical protein GOALK_050_01120 [Gordonia alkanivorans NBRC 16433] Length=441 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/86 (44%), Positives = 45/86 (53%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA 58 VLGWT GR+ DGW+ +G S D++AAV RVRAAG L Sbjct 355 VLGWTFHGGRIDDGWEVDDGRPQVGIAGGADTSVAVPMWVTDDVEAAVERVRAAGGGVLE 414 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 EP P +SA C DDQG + +LGQL Sbjct 415 EPRTAPYGVSARCTDDQGTQFYLGQL 440 >gi|284989099|ref|YP_003407653.1| glyoxalase/bleomycin resistance protein/dioxygenase [Geodermatophilus obscurus DSM 43160] gi|284062344|gb|ADB73282.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Geodermatophilus obscurus DSM 43160] Length=245 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/88 (45%), Positives = 46/88 (53%), Gaps = 6/88 (6%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQ---PASERRADMDGGDIDAAVARVRAAGAL 57 VLGW++ PGRV DGW+APG G Q P + +D DI+ AVA V+ AG Sbjct 159 VLGWSLSPGRVDDGWEAPGQTPTVGLHGGQASDPGAVPVYAVD--DIEVAVAAVQTAGGQ 216 Query 58 A-EPSRQPDDMSAECADDQGARCHLGQL 84 A RQ SA C DDQG L QL Sbjct 217 AGAVERQDSGSSAYCRDDQGLPFRLAQL 244 >gi|262200852|ref|YP_003272060.1| glyoxalase/bleomycin resistance protein/dioxygenase [Gordonia bronchialis DSM 43247] gi|262084199|gb|ACY20167.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Gordonia bronchialis DSM 43247] Length=438 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/86 (45%), Positives = 49/86 (57%), Gaps = 2/86 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA 58 VLGW +PGR+ DGW+ V +G ++ + D+ AAV RVRAAG L Sbjct 352 VLGWDFRPGRIDDGWEVTDVRPQIGVAGGADSAVAVPMWNTDDVAAAVQRVRAAGGQVLD 411 Query 59 EPSRQPDDMSAECADDQGARCHLGQL 84 EP R P ++A C DDQGA +LGQL Sbjct 412 EPERAPYGITARCTDDQGAEFYLGQL 437 >gi|331695308|ref|YP_004331547.1| glyoxalase/bleomycin resistance protein/dioxygenase [Pseudonocardia dioxanivorans CB1190] gi|326949997|gb|AEA23694.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Pseudonocardia dioxanivorans CB1190] Length=419 Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust. Identities = 31/77 (41%), Positives = 37/77 (49%), Gaps = 1/77 (1%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA-E 59 VLGWT + R + GV G Q A+ D+D VA VRAAG A E Sbjct 211 VLGWTTEGARDGHARRVVGVGQELGMYGGQDAATTMCAYAVDDVDETVALVRAAGGSAEE 270 Query 60 PSRQPDDMSAECADDQG 76 P +P +A CADDQG Sbjct 271 PLDEPWGRTATCADDQG 287 >gi|333921155|ref|YP_004494736.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolicicoccus subflavus DQS3-9A1] gi|333483376|gb|AEF41936.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Amycolicicoccus subflavus DQS3-9A1] Length=371 Score = 37.4 bits (85), Expect = 0.83, Method: Compositional matrix adjust. Identities = 33/89 (38%), Positives = 43/89 (49%), Gaps = 11/89 (12%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRA----DMDGGDIDAAVARVRAAG- 55 V+GW + G++ G+H M SG A E R +D D AA +RAAG Sbjct 288 VVGWQFEGSEERGGFEMMGIHPM---SGMTRAPEDRVIPMWRVD--DASAAPEFIRAAGG 342 Query 56 -ALAEPSRQPDDMSAECADDQGARCHLGQ 83 LA P + +SA C DDQG R +LG Sbjct 343 EVLAGPEVREYGVSAHCRDDQGGRFYLGS 371 >gi|300782044|ref|YP_003762335.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolatopsis mediterranei U32] gi|299791558|gb|ADJ41933.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolatopsis mediterranei U32] gi|340523400|gb|AEK38605.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolatopsis mediterranei S699] Length=294 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 28/84 (34%), Positives = 38/84 (46%), Gaps = 5/84 (5%) Query 1 VLGWTVKPGRVADGW--QAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA 58 VLGW PG D W PG+ Q + +D D+++A+ARVR G A Sbjct 207 VLGWQFTPGSTTDSWGFSGPGLEGGLWAGDRQVGWKLMYAVD--DLESAMARVREQGGRA 264 Query 59 -EPSRQPDDMSAECADDQGARCHL 81 E P +A+C D+QG L Sbjct 265 GEVEHHPYGNTADCTDNQGIEFWL 288 >gi|302531473|ref|ZP_07283815.1| predicted protein [Streptomyces sp. AA4] gi|302440368|gb|EFL12184.1| predicted protein [Streptomyces sp. AA4] Length=297 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/83 (34%), Positives = 38/83 (46%), Gaps = 2/83 (2%) Query 1 VLGWTVKPGRVADGWQAPGVHLMARC-SGPQPASERRADMDGGDIDAAVARVRAAGALA- 58 VLGW G + W+ G L G + + + D++AA+ RVR G A Sbjct 209 VLGWQFSQGSLPTAWRIEGHGLPGGLWGGSELQTGWKLMFAVDDLEAALGRVRDQGGRAG 268 Query 59 EPSRQPDDMSAECADDQGARCHL 81 E QP +A+CADDQG L Sbjct 269 EVENQPYGRTADCADDQGIEFWL 291 >gi|148557481|ref|YP_001265063.1| glyoxalase/bleomycin resistance protein/dioxygenase [Sphingomonas wittichii RW1] gi|148502671|gb|ABQ70925.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Sphingomonas wittichii RW1] Length=261 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/45 (54%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query 42 GDIDAAVARVRAAG--ALAEPSRQPD-DMSAECADDQGARCHLGQ 83 GDIDAAVA+VRA G EP P+ A CAD QGA +L Q Sbjct 76 GDIDAAVAKVRAGGGKVYREPQMIPNIGRFAVCADPQGAMFNLMQ 120 Lambda K H 0.318 0.133 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131923386480 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40