BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0689c

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607829|ref|NP_215203.1|  hypothetical protein Rv0689c [Mycob...   165    2e-39
gi|145225640|ref|YP_001136318.1|  glyoxalase/bleomycin resistance...  75.1    3e-12
gi|315445993|ref|YP_004078872.1|  hypothetical protein Mspyr1_448...  74.7    4e-12
gi|118472958|ref|YP_885800.1|  glyoxalase [Mycobacterium smegmati...  71.6    3e-11
gi|120402303|ref|YP_952132.1|  glyoxalase/bleomycin resistance pr...  71.2    5e-11
gi|108797969|ref|YP_638166.1|  glyoxalase/bleomycin resistance pr...  65.5    2e-09
gi|119867066|ref|YP_937018.1|  glyoxalase/bleomycin resistance pr...  65.5    3e-09
gi|343925817|ref|ZP_08765332.1|  hypothetical protein GOALK_050_0...  58.9    3e-07
gi|284989099|ref|YP_003407653.1|  glyoxalase/bleomycin resistance...  52.0    3e-05
gi|262200852|ref|YP_003272060.1|  glyoxalase/bleomycin resistance...  50.1    1e-04
gi|331695308|ref|YP_004331547.1|  glyoxalase/bleomycin resistance...  38.1    0.50 
gi|333921155|ref|YP_004494736.1|  glyoxalase/bleomycin resistance...  37.4    0.83 
gi|300782044|ref|YP_003762335.1|  glyoxalase/bleomycin resistance...  37.4    0.84 
gi|302531473|ref|ZP_07283815.1|  predicted protein [Streptomyces ...  36.6    1.3  
gi|148557481|ref|YP_001265063.1|  glyoxalase/bleomycin resistance...  35.4    2.7  


>gi|15607829|ref|NP_215203.1| hypothetical protein Rv0689c [Mycobacterium tuberculosis H37Rv]
 gi|15840092|ref|NP_335129.1| hypothetical protein MT0717 [Mycobacterium tuberculosis CDC1551]
 gi|31791873|ref|NP_854366.1| hypothetical protein Mb0708c [Mycobacterium bovis AF2122/97]
 74 more sequence titles
 Length=84

 Score =  165 bits (418),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 83/84 (99%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  1   VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALAEP  60
           +LGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALAEP
Sbjct  1   MLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALAEP  60

Query  61  SRQPDDMSAECADDQGARCHLGQL  84
           SRQPDDMSAECADDQGARCHLGQL
Sbjct  61  SRQPDDMSAECADDQGARCHLGQL  84


>gi|145225640|ref|YP_001136318.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
gilvum PYR-GCK]
 gi|145218126|gb|ABP47530.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
gilvum PYR-GCK]
Length=421

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 51/86 (60%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA  58
            VL WT +PGRV DGW   G H M+  +G    +         DIDAAVARVR AG   + 
Sbjct  336  VLFWTYEPGRVDDGWGVVGAHPMSGAAGGHVEAVTVPMWTVADIDAAVARVREAGGTVIE  395

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
            EPS+QP   SA C DDQGAR +LG+ 
Sbjct  396  EPSQQPYGKSALCTDDQGARFYLGEF  421


>gi|315445993|ref|YP_004078872.1| hypothetical protein Mspyr1_44830 [Mycobacterium sp. Spyr1]
 gi|315264296|gb|ADU01038.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=421

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 51/86 (60%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA  58
            VL WT +PGRV DGW   G H M+  +G    +         DIDAAVARVR AG   + 
Sbjct  336  VLFWTYEPGRVDDGWGVVGAHPMSGAAGGHVEAVTVPMWTVADIDAAVARVREAGGTVIE  395

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
            EPS+QP   SA C DDQGAR +LG+ 
Sbjct  396  EPSQQPYGKSALCTDDQGARFYLGEF  421


>gi|118472958|ref|YP_885800.1| glyoxalase [Mycobacterium smegmatis str. MC2 155]
 gi|118174245|gb|ABK75141.1| glyoxalase family protein [Mycobacterium smegmatis str. MC2 155]
Length=427

 Score = 71.6 bits (174),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 39/86 (46%), Positives = 50/86 (59%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA  58
            VL WT +PGR+ADGW       M+  +G    +         DIDAAV RVR AG   ++
Sbjct  342  VLSWTFEPGRIADGWGVQNCQPMSGMAGGSDRATTVPMWTVADIDAAVTRVREAGGTVIS  401

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
             P+RQP  + AEC DDQGAR +LG+ 
Sbjct  402  APARQPYGLMAECTDDQGARFYLGEF  427


>gi|120402303|ref|YP_952132.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
vanbaalenii PYR-1]
 gi|119955121|gb|ABM12126.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
vanbaalenii PYR-1]
Length=377

 Score = 71.2 bits (173),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 39/86 (46%), Positives = 52/86 (61%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA  58
            +L WT +PGR+ DGW   G H M+  +G   ++         DIDAAV+RVR+AG   + 
Sbjct  292  LLFWTYEPGRIDDGWGVVGAHPMSGAAGGNASAVTVPMWTVDDIDAAVSRVRSAGGTVIE  351

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
            EPS+Q    SA C DDQG R +LG+L
Sbjct  352  EPSQQSYGKSALCTDDQGTRFYLGEL  377


>gi|108797969|ref|YP_638166.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
sp. MCS]
 gi|108768388|gb|ABG07110.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
sp. MCS]
Length=372

 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 39/86 (46%), Positives = 44/86 (52%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA--  58
            VL WT +PGR+ DGW       M    G    S         DID AV RV  AG     
Sbjct  287  VLSWTFEPGRIEDGWAVNECRPMTGIGGGSDRSVTVPMWTVADIDDAVRRVTEAGGSVRQ  346

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
            EP+RQP  + AEC DDQGAR +LGQ 
Sbjct  347  EPNRQPYGLMAECVDDQGARFYLGQF  372


>gi|119867066|ref|YP_937018.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
sp. KMS]
 gi|126433632|ref|YP_001069323.1| glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
sp. JLS]
 gi|119693155|gb|ABL90228.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
sp. KMS]
 gi|126233432|gb|ABN96832.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Mycobacterium 
sp. JLS]
Length=418

 Score = 65.5 bits (158),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 39/86 (46%), Positives = 44/86 (52%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA--  58
            VL WT +PGR+ DGW       M    G    S         DID AV RV  AG     
Sbjct  333  VLSWTFEPGRIEDGWAVNECRPMTGIGGGSDRSVTVPMWTVADIDDAVRRVTEAGGSVRQ  392

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
            EP+RQP  + AEC DDQGAR +LGQ 
Sbjct  393  EPNRQPYGLMAECVDDQGARFYLGQF  418


>gi|343925817|ref|ZP_08765332.1| hypothetical protein GOALK_050_01120 [Gordonia alkanivorans NBRC 
16433]
 gi|343764168|dbj|GAA12258.1| hypothetical protein GOALK_050_01120 [Gordonia alkanivorans NBRC 
16433]
Length=441

 Score = 58.9 bits (141),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 45/86 (53%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA  58
            VLGWT   GR+ DGW+          +G    S         D++AAV RVRAAG   L 
Sbjct  355  VLGWTFHGGRIDDGWEVDDGRPQVGIAGGADTSVAVPMWVTDDVEAAVERVRAAGGGVLE  414

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
            EP   P  +SA C DDQG + +LGQL
Sbjct  415  EPRTAPYGVSARCTDDQGTQFYLGQL  440


>gi|284989099|ref|YP_003407653.1| glyoxalase/bleomycin resistance protein/dioxygenase [Geodermatophilus 
obscurus DSM 43160]
 gi|284062344|gb|ADB73282.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Geodermatophilus 
obscurus DSM 43160]
Length=245

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 39/88 (45%), Positives = 46/88 (53%), Gaps = 6/88 (6%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQ---PASERRADMDGGDIDAAVARVRAAGAL  57
            VLGW++ PGRV DGW+APG        G Q   P +     +D  DI+ AVA V+ AG  
Sbjct  159  VLGWSLSPGRVDDGWEAPGQTPTVGLHGGQASDPGAVPVYAVD--DIEVAVAAVQTAGGQ  216

Query  58   A-EPSRQPDDMSAECADDQGARCHLGQL  84
            A    RQ    SA C DDQG    L QL
Sbjct  217  AGAVERQDSGSSAYCRDDQGLPFRLAQL  244


>gi|262200852|ref|YP_003272060.1| glyoxalase/bleomycin resistance protein/dioxygenase [Gordonia 
bronchialis DSM 43247]
 gi|262084199|gb|ACY20167.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Gordonia 
bronchialis DSM 43247]
Length=438

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 49/86 (57%), Gaps = 2/86 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAG--ALA  58
            VLGW  +PGR+ DGW+   V      +G   ++      +  D+ AAV RVRAAG   L 
Sbjct  352  VLGWDFRPGRIDDGWEVTDVRPQIGVAGGADSAVAVPMWNTDDVAAAVQRVRAAGGQVLD  411

Query  59   EPSRQPDDMSAECADDQGARCHLGQL  84
            EP R P  ++A C DDQGA  +LGQL
Sbjct  412  EPERAPYGITARCTDDQGAEFYLGQL  437


>gi|331695308|ref|YP_004331547.1| glyoxalase/bleomycin resistance protein/dioxygenase [Pseudonocardia 
dioxanivorans CB1190]
 gi|326949997|gb|AEA23694.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Pseudonocardia 
dioxanivorans CB1190]
Length=419

 Score = 38.1 bits (87),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 37/77 (49%), Gaps = 1/77 (1%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA-E  59
            VLGWT +  R     +  GV       G Q A+         D+D  VA VRAAG  A E
Sbjct  211  VLGWTTEGARDGHARRVVGVGQELGMYGGQDAATTMCAYAVDDVDETVALVRAAGGSAEE  270

Query  60   PSRQPDDMSAECADDQG  76
            P  +P   +A CADDQG
Sbjct  271  PLDEPWGRTATCADDQG  287


>gi|333921155|ref|YP_004494736.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolicicoccus 
subflavus DQS3-9A1]
 gi|333483376|gb|AEF41936.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Amycolicicoccus 
subflavus DQS3-9A1]
Length=371

 Score = 37.4 bits (85),  Expect = 0.83, Method: Compositional matrix adjust.
 Identities = 33/89 (38%), Positives = 43/89 (49%), Gaps = 11/89 (12%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARCSGPQPASERRA----DMDGGDIDAAVARVRAAG-  55
            V+GW  +      G++  G+H M   SG   A E R      +D  D  AA   +RAAG 
Sbjct  288  VVGWQFEGSEERGGFEMMGIHPM---SGMTRAPEDRVIPMWRVD--DASAAPEFIRAAGG  342

Query  56   -ALAEPSRQPDDMSAECADDQGARCHLGQ  83
              LA P  +   +SA C DDQG R +LG 
Sbjct  343  EVLAGPEVREYGVSAHCRDDQGGRFYLGS  371


>gi|300782044|ref|YP_003762335.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolatopsis 
mediterranei U32]
 gi|299791558|gb|ADJ41933.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolatopsis 
mediterranei U32]
 gi|340523400|gb|AEK38605.1| glyoxalase/bleomycin resistance protein/dioxygenase [Amycolatopsis 
mediterranei S699]
Length=294

 Score = 37.4 bits (85),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 28/84 (34%), Positives = 38/84 (46%), Gaps = 5/84 (5%)

Query  1    VLGWTVKPGRVADGW--QAPGVHLMARCSGPQPASERRADMDGGDIDAAVARVRAAGALA  58
            VLGW   PG   D W    PG+         Q   +    +D  D+++A+ARVR  G  A
Sbjct  207  VLGWQFTPGSTTDSWGFSGPGLEGGLWAGDRQVGWKLMYAVD--DLESAMARVREQGGRA  264

Query  59   -EPSRQPDDMSAECADDQGARCHL  81
             E    P   +A+C D+QG    L
Sbjct  265  GEVEHHPYGNTADCTDNQGIEFWL  288


>gi|302531473|ref|ZP_07283815.1| predicted protein [Streptomyces sp. AA4]
 gi|302440368|gb|EFL12184.1| predicted protein [Streptomyces sp. AA4]
Length=297

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 28/83 (34%), Positives = 38/83 (46%), Gaps = 2/83 (2%)

Query  1    VLGWTVKPGRVADGWQAPGVHLMARC-SGPQPASERRADMDGGDIDAAVARVRAAGALA-  58
            VLGW    G +   W+  G  L      G +  +  +      D++AA+ RVR  G  A 
Sbjct  209  VLGWQFSQGSLPTAWRIEGHGLPGGLWGGSELQTGWKLMFAVDDLEAALGRVRDQGGRAG  268

Query  59   EPSRQPDDMSAECADDQGARCHL  81
            E   QP   +A+CADDQG    L
Sbjct  269  EVENQPYGRTADCADDQGIEFWL  291


>gi|148557481|ref|YP_001265063.1| glyoxalase/bleomycin resistance protein/dioxygenase [Sphingomonas 
wittichii RW1]
 gi|148502671|gb|ABQ70925.1| Glyoxalase/bleomycin resistance protein/dioxygenase [Sphingomonas 
wittichii RW1]
Length=261

 Score = 35.4 bits (80),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 24/45 (54%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query  42   GDIDAAVARVRAAG--ALAEPSRQPD-DMSAECADDQGARCHLGQ  83
            GDIDAAVA+VRA G     EP   P+    A CAD QGA  +L Q
Sbjct  76   GDIDAAVAKVRAGGGKVYREPQMIPNIGRFAVCADPQGAMFNLMQ  120



Lambda     K      H
   0.318    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131923386480




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40