BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0693
Length=391
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607833|ref|NP_215207.1| coenzyme PQQ synthesis protein E [M... 806 0.0
gi|340625712|ref|YP_004744164.1| putative coenzyme PQQ synthesis... 804 0.0
gi|183981042|ref|YP_001849333.1| coenzyme PQQ synthesis protein ... 722 0.0
gi|336460675|gb|EGO39566.1| radical SAM peptide maturase, mycofa... 720 0.0
gi|118462987|ref|YP_883613.1| radical SAM domain-containing prot... 720 0.0
gi|342861783|ref|ZP_08718428.1| radical SAM domain-containing pr... 718 0.0
gi|41410251|ref|NP_963087.1| PqqE [Mycobacterium avium subsp. pa... 718 0.0
gi|254822794|ref|ZP_05227795.1| radical SAM domain-containing pr... 716 0.0
gi|254776914|ref|ZP_05218430.1| radical SAM domain-containing pr... 716 0.0
gi|296168547|ref|ZP_06850351.1| coenzyme PQQ synthesis protein E... 701 0.0
gi|240167694|ref|ZP_04746353.1| radical SAM domain-containing pr... 697 0.0
gi|108797974|ref|YP_638171.1| radical SAM family protein [Mycoba... 684 0.0
gi|118616557|ref|YP_904889.1| coenzyme PQQ synthesis protein E, ... 682 0.0
gi|118470885|ref|YP_885806.1| radical SAM domain-containing prot... 680 0.0
gi|120402307|ref|YP_952136.1| radical SAM domain-containing prot... 668 0.0
gi|169630914|ref|YP_001704563.1| coenzyme PQQ synthesis protein ... 657 0.0
gi|145225636|ref|YP_001136314.1| radical SAM domain-containing p... 656 0.0
gi|315445988|ref|YP_004078867.1| Fe-S oxidoreductase [Mycobacter... 655 0.0
gi|333991988|ref|YP_004524602.1| coenzyme PQQ synthesis protein ... 651 0.0
gi|326384860|ref|ZP_08206535.1| Radical SAM domain-containing pr... 629 2e-178
gi|319951172|ref|ZP_08025016.1| radical SAM protein [Dietzia cin... 629 3e-178
gi|312140959|ref|YP_004008295.1| radical sam protein [Rhodococcu... 614 8e-174
gi|226365539|ref|YP_002783322.1| hypothetical protein ROP_61300 ... 611 6e-173
gi|111023035|ref|YP_706007.1| coenzyme synthesis protein [Rhodoc... 610 1e-172
gi|158315127|ref|YP_001507635.1| radical SAM domain-containing p... 600 1e-169
gi|226305288|ref|YP_002765246.1| hypothetical protein RER_17990 ... 600 1e-169
gi|343927802|ref|ZP_08767270.1| hypothetical protein GOALK_097_0... 599 2e-169
gi|3873402|gb|AAC77478.1| unknown [Rhodococcus erythropolis] 598 7e-169
gi|111222984|ref|YP_713778.1| coenzyme PQQ synthesis protein E [... 590 1e-166
gi|262203642|ref|YP_003274850.1| radical SAM protein [Gordonia b... 581 8e-164
gi|333922022|ref|YP_004495603.1| hypothetical protein AS9A_4370 ... 574 9e-162
gi|302526437|ref|ZP_07278779.1| radical SAM domain-containing pr... 573 1e-161
gi|258651022|ref|YP_003200178.1| radical SAM domain-containing p... 572 3e-161
gi|326329213|ref|ZP_08195540.1| MoaA/nifB/pqqE family protein [N... 570 2e-160
gi|336178558|ref|YP_004583933.1| Radical SAM domain-containing p... 570 2e-160
gi|269126595|ref|YP_003299965.1| Radical SAM domain-containing p... 569 3e-160
gi|333921980|ref|YP_004495561.1| hypothetical protein AS9A_4328 ... 567 1e-159
gi|324999640|ref|ZP_08120752.1| radical SAM domain-containing pr... 563 1e-158
gi|54024202|ref|YP_118444.1| hypothetical protein nfa22330 [Noca... 562 4e-158
gi|331699422|ref|YP_004335661.1| Radical SAM domain-containing p... 560 2e-157
gi|54025413|ref|YP_119655.1| hypothetical protein nfa34430 [Noca... 560 2e-157
gi|134098953|ref|YP_001104614.1| coenzyme PQQ synthesis protein ... 553 2e-155
gi|158315012|ref|YP_001507520.1| radical SAM domain-containing p... 550 1e-154
gi|284993283|ref|YP_003411838.1| radical SAM domain-containing p... 550 2e-154
gi|288919784|ref|ZP_06414109.1| Radical SAM domain protein [Fran... 537 1e-150
gi|312194879|ref|YP_004014940.1| radical SAM domain protein [Fra... 502 5e-140
gi|269928766|ref|YP_003321087.1| Radical SAM domain-containing p... 405 8e-111
gi|221636246|ref|YP_002524122.1| radical SAM domain protein [The... 402 5e-110
gi|108805936|ref|YP_645873.1| radical SAM family protein [Rubrob... 393 3e-107
gi|148265581|ref|YP_001232287.1| radical SAM domain-containing p... 269 6e-70
>gi|15607833|ref|NP_215207.1| coenzyme PQQ synthesis protein E [Mycobacterium tuberculosis
H37Rv]
gi|15840098|ref|NP_335135.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis CDC1551]
gi|31791877|ref|NP_854370.1| coenzyme PQQ synthesis protein E [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=391
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/391 (100%), Positives = 391/391 (100%), Gaps = 0/391 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE
Sbjct 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD
Sbjct 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL
Sbjct 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG
Sbjct 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE
Sbjct 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR
Sbjct 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
Query 361 ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV
Sbjct 361 ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
>gi|340625712|ref|YP_004744164.1| putative coenzyme PQQ synthesis protein E PQQE (coenzyme PQQ
synthesis protein III) [Mycobacterium canettii CIPT 140010059]
gi|340003902|emb|CCC43034.1| putative coenzyme PQQ synthesis protein E PQQE (coenzyme PQQ
synthesis protein III) [Mycobacterium canettii CIPT 140010059]
Length=391
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/391 (99%), Positives = 390/391 (99%), Gaps = 0/391 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE
Sbjct 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD
Sbjct 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDAIRG GSFDMAVRALQNLAAAGFAGVKISVV+TRRNVAQLDEFATL
Sbjct 121 VQISLDGATAEVNDAIRGNGSFDMAVRALQNLAAAGFAGVKISVVVTRRNVAQLDEFATL 180
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG
Sbjct 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE
Sbjct 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR
Sbjct 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
Query 361 ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV
Sbjct 361 ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
>gi|183981042|ref|YP_001849333.1| coenzyme PQQ synthesis protein E, PqqE [Mycobacterium marinum
M]
gi|183174368|gb|ACC39478.1| coenzyme PQQ synthesis protein E, PqqE [Mycobacterium marinum
M]
Length=391
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/391 (89%), Positives = 361/391 (93%), Gaps = 0/391 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
MT+ VPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQC+DIIDE
Sbjct 1 MTTAVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCQDIIDE 60
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRI PEVA RLAA+DYVD
Sbjct 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRINPEVAARLAASDYVD 120
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDA+RG GSF MAVRAL+NLAAAGFA KISVV+TR NV QLD+FA L
Sbjct 121 VQISLDGATAEVNDAVRGAGSFAMAVRALENLAAAGFADAKISVVVTRHNVGQLDDFAAL 180
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A RYGATLRITRLRPSGRG DVW +LHPTA QQV LYDWLV+KGERVLTGDSFFHLAPLG
Sbjct 181 ADRYGATLRITRLRPSGRGADVWEELHPTAAQQVALYDWLVAKGERVLTGDSFFHLAPLG 240
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVL+DGGF VWKN+ LFR+
Sbjct 241 SSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLTDGGFDQVWKNAPLFRQ 300
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQG+ PALA+ERH PRPR
Sbjct 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGYGAPALAQERHAPRPR 360
Query 361 ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
DHSRG RVS PVPLTL+ RPP R CNESPV
Sbjct 361 VDHSRGSRVSAPVPLTLTTRPPARLCNESPV 391
>gi|336460675|gb|EGO39566.1| radical SAM peptide maturase, mycofactocin system [Mycobacterium
avium subsp. paratuberculosis S397]
Length=404
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/401 (89%), Positives = 365/401 (92%), Gaps = 11/401 (2%)
Query 2 TSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDEL 61
+PVPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELSTRQC DIIDEL
Sbjct 4 VAPVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTRQCMDIIDEL 63
Query 62 ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDV 121
ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVA RLAA+DYVDV
Sbjct 64 ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVAARLAASDYVDV 123
Query 122 QISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGF---AGVKISVVITRRNVAQLDEFA 178
QISLDGATAEVNDA+RG GSFDMAVRALQNLA AGF G KISVV+TR NV QLDEFA
Sbjct 124 QISLDGATAEVNDAVRGPGSFDMAVRALQNLADAGFTQNGGAKISVVVTRHNVGQLDEFA 183
Query 179 TLASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAP 238
LASRYGATLRITRLRPSGRG DVW +LHPTADQQVQLYDWLV+KGERVLTGDSFFHLAP
Sbjct 184 ALASRYGATLRITRLRPSGRGADVWDELHPTADQQVQLYDWLVAKGERVLTGDSFFHLAP 243
Query 239 LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLF 298
LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVLSDGGF NVWKN+ LF
Sbjct 244 LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLSDGGFDNVWKNAPLF 303
Query 299 RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPR 358
RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHS ALA +R PR
Sbjct 304 RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSAAALAGDREAPR 363
Query 359 PRADHSRGRRVSKPVPLTLSMR--------PPKRPCNESPV 391
PRADHSRG+R+ +PVPLTLS+R PP R CNESPV
Sbjct 364 PRADHSRGKRIRQPVPLTLSVRPPVLTPAAPPARLCNESPV 404
>gi|118462987|ref|YP_883613.1| radical SAM domain-containing protein [Mycobacterium avium 104]
gi|118164274|gb|ABK65171.1| radical SAM domain protein [Mycobacterium avium 104]
Length=404
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/400 (89%), Positives = 365/400 (92%), Gaps = 11/400 (2%)
Query 3 SPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELE 62
+PVPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELSTRQC DIIDELE
Sbjct 5 APVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTRQCMDIIDELE 64
Query 63 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQ 122
RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVA RLAA+DYVDVQ
Sbjct 65 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVAARLAASDYVDVQ 124
Query 123 ISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGF---AGVKISVVITRRNVAQLDEFAT 179
ISLDGATAEVNDA+RG GSFDMAVRALQNLA AGF G KISVV+TR NV QLDEFA
Sbjct 125 ISLDGATAEVNDAVRGPGSFDMAVRALQNLADAGFTQNGGAKISVVVTRHNVGQLDEFAA 184
Query 180 LASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPL 239
LASRYGATLRITRLRPSGRG DVW +LHPTADQQVQLYDWLV+KGERVLTGDSFFHLAPL
Sbjct 185 LASRYGATLRITRLRPSGRGADVWDELHPTADQQVQLYDWLVAKGERVLTGDSFFHLAPL 244
Query 240 GQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFR 299
GQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVLSDGGF NVWKN+ LFR
Sbjct 245 GQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLSDGGFDNVWKNAPLFR 304
Query 300 ELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRP 359
ELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHS ALA +R PRP
Sbjct 305 ELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSAAALAGDREAPRP 364
Query 360 RADHSRGRRVSKPVPLTLSMR--------PPKRPCNESPV 391
RADHSRG+R+ +PVPLTLS+R PP R CNESPV
Sbjct 365 RADHSRGKRIRQPVPLTLSVRPPVLTPAAPPARLCNESPV 404
>gi|342861783|ref|ZP_08718428.1| radical SAM domain-containing protein [Mycobacterium colombiense
CECT 3035]
gi|342130600|gb|EGT83904.1| radical SAM domain-containing protein [Mycobacterium colombiense
CECT 3035]
Length=401
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/397 (89%), Positives = 365/397 (92%), Gaps = 8/397 (2%)
Query 3 SPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELE 62
+PVPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELSTRQCKDIIDELE
Sbjct 5 APVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTRQCKDIIDELE 64
Query 63 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQ 122
RMQVFYVNIGGGEPTVRPDFWELVDYAT HHVGVKFSTNGVRITPEVA RLAA+DYVDVQ
Sbjct 65 RMQVFYVNIGGGEPTVRPDFWELVDYATEHHVGVKFSTNGVRITPEVAARLAASDYVDVQ 124
Query 123 ISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLAS 182
ISLDGATAEVNDA+RG GSFDMAVRAL+NLAAAGF KISVV+TR NV QLDEFA LAS
Sbjct 125 ISLDGATAEVNDAVRGPGSFDMAVRALENLAAAGFKDAKISVVVTRHNVDQLDEFAALAS 184
Query 183 RYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQS 242
RYGATLRITRLRPSGRG DVW +LHPTADQQVQLYDWLV+KGERVLTGDSFFHLAPLGQS
Sbjct 185 RYGATLRITRLRPSGRGADVWEELHPTADQQVQLYDWLVAKGERVLTGDSFFHLAPLGQS 244
Query 243 GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELR 302
GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNV+SDGGF NVWKN+ LFRELR
Sbjct 245 GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVVSDGGFDNVWKNAPLFRELR 304
Query 303 EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRAD 362
EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHS AL+ +R PRPRAD
Sbjct 305 EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSATALSHDRETPRPRAD 364
Query 363 HSRGRRVSKPVPLTLSMR--------PPKRPCNESPV 391
HSRG+R+ +PVPLTLS+R PP R CNESPV
Sbjct 365 HSRGKRIRQPVPLTLSLRPPAVTPATPPARMCNESPV 401
>gi|41410251|ref|NP_963087.1| PqqE [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41399085|gb|AAS06703.1| PqqE [Mycobacterium avium subsp. paratuberculosis K-10]
Length=404
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/401 (88%), Positives = 364/401 (91%), Gaps = 11/401 (2%)
Query 2 TSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDEL 61
+PVPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELSTRQC DIIDEL
Sbjct 4 VAPVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTRQCMDIIDEL 63
Query 62 ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDV 121
ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVA RLAA+DYVDV
Sbjct 64 ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVAARLAASDYVDV 123
Query 122 QISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGF---AGVKISVVITRRNVAQLDEFA 178
QISLDGATAEVNDA+RG GSFDMAVRALQNLA AGF G KISVV+TR NV QLDEFA
Sbjct 124 QISLDGATAEVNDAVRGPGSFDMAVRALQNLADAGFTQNGGAKISVVVTRHNVGQLDEFA 183
Query 179 TLASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAP 238
LASRYGATLRITRLRPSGRG DVW +LHPTADQQVQLYDWLV+KGERVLTGDSFFHLAP
Sbjct 184 ALASRYGATLRITRLRPSGRGADVWDELHPTADQQVQLYDWLVAKGERVLTGDSFFHLAP 243
Query 239 LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLF 298
LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVLSDGGF NVWKN+ L
Sbjct 244 LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLSDGGFDNVWKNAPLL 303
Query 299 RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPR 358
RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHS ALA +R PR
Sbjct 304 RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSAAALAGDREAPR 363
Query 359 PRADHSRGRRVSKPVPLTLSMR--------PPKRPCNESPV 391
PRADHSRG+R+ +PVPLTLS+R PP R CNESPV
Sbjct 364 PRADHSRGKRIRQPVPLTLSVRPPVLTPAAPPARLCNESPV 404
>gi|254822794|ref|ZP_05227795.1| radical SAM domain-containing protein [Mycobacterium intracellulare
ATCC 13950]
Length=403
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/403 (88%), Positives = 366/403 (91%), Gaps = 12/403 (2%)
Query 1 MTSP----VPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKD 56
MT+P VPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELSTRQC D
Sbjct 1 MTAPTQAAVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTRQCMD 60
Query 57 IIDELERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAAT 116
IIDELERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVA RLAA+
Sbjct 61 IIDELERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVAARLAAS 120
Query 117 DYVDVQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDE 176
DYVDVQISLDGATAEVNDA+RG GSFDMAVRAL+NLA AGF KISVV+TR NV QLDE
Sbjct 121 DYVDVQISLDGATAEVNDAVRGPGSFDMAVRALENLADAGFKDAKISVVVTRHNVDQLDE 180
Query 177 FATLASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHL 236
FA LASRYGATLRITRLRPSGRG DVW +LHPTADQQVQLYDWLV+KGERVLTGDSFFHL
Sbjct 181 FAALASRYGATLRITRLRPSGRGADVWEELHPTADQQVQLYDWLVAKGERVLTGDSFFHL 240
Query 237 APLGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSS 296
APLGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVLSDGGF NVWKN+
Sbjct 241 APLGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLSDGGFDNVWKNAP 300
Query 297 LFRELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHL 356
LFRELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHS ALA +R
Sbjct 301 LFRELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSASALAHDRET 360
Query 357 PRPRADHSRGRRVSKPVPLTLSMR--------PPKRPCNESPV 391
PRPRADHSRG+R+ +PVPLTLS+R PP R CNESPV
Sbjct 361 PRPRADHSRGKRIRQPVPLTLSLRPPTVTPAAPPARLCNESPV 403
>gi|254776914|ref|ZP_05218430.1| radical SAM domain-containing protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length=404
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/400 (88%), Positives = 363/400 (91%), Gaps = 11/400 (2%)
Query 3 SPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELE 62
+PVPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELSTRQC DIIDELE
Sbjct 5 APVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTRQCMDIIDELE 64
Query 63 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQ 122
RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVA RLAA+DYVDVQ
Sbjct 65 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVAARLAASDYVDVQ 124
Query 123 ISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGF---AGVKISVVITRRNVAQLDEFAT 179
ISLDGATAEVNDA+RG GSFDMAVRALQNLA AGF G KISVV+TR NV QLDEFA
Sbjct 125 ISLDGATAEVNDAVRGPGSFDMAVRALQNLADAGFTQNGGAKISVVVTRHNVGQLDEFAA 184
Query 180 LASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPL 239
LASRYGATLRITRLRPSGRG DVW +LHPTADQQVQLYDWLV+KGERVLTGDSFFHLAPL
Sbjct 185 LASRYGATLRITRLRPSGRGADVWDELHPTADQQVQLYDWLVAKGERVLTGDSFFHLAPL 244
Query 240 GQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFR 299
GQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVLSDGGF NVWKN+ L R
Sbjct 245 GQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLSDGGFDNVWKNAPLVR 304
Query 300 ELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRP 359
LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHS ALA +R PRP
Sbjct 305 ALREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSAAALAGDREAPRP 364
Query 360 RADHSRGRRVSKPVPLTLSMR--------PPKRPCNESPV 391
RADHSRG+R+ +PVPLTLS+R PP R CNESPV
Sbjct 365 RADHSRGKRIRQPVPLTLSVRPPVLTPAAPPARLCNESPV 404
>gi|296168547|ref|ZP_06850351.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone biosynthesis
protein E) [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896610|gb|EFG76249.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone biosynthesis
protein E) [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=388
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/391 (88%), Positives = 356/391 (92%), Gaps = 3/391 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
MT+ VPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELSTRQC DIIDE
Sbjct 1 MTATVPRLIEQFESGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTRQCMDIIDE 60
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRIT EVA RLAA+DYVD
Sbjct 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITEEVAARLAASDYVD 120
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDA+RG GSF MAVRAL+NLA AGF+ KISVV+TR NV QLDEFA L
Sbjct 121 VQISLDGATAEVNDAVRGPGSFAMAVRALENLANAGFSDAKISVVVTRHNVDQLDEFAAL 180
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
ASRYGATLRITRLRPSGRG DVW DLHPTA+QQVQLYDWLV+KGERVLTGDSFFHL+PLG
Sbjct 181 ASRYGATLRITRLRPSGRGADVWEDLHPTAEQQVQLYDWLVAKGERVLTGDSFFHLSPLG 240
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVL+DGGF NVWKN+ LFRE
Sbjct 241 SSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLTDGGFDNVWKNAPLFRE 300
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQS GACGSCGHYD+CRGGCMAAKFFTGLP+DGPDPECVQGHS ALAR R PRPR
Sbjct 301 LREPQSPGACGSCGHYDACRGGCMAAKFFTGLPMDGPDPECVQGHSAAALARTRETPRPR 360
Query 361 ADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
ADHS R+ PV LTLS RPP R CNESPV
Sbjct 361 ADHS--RKTGGPVLLTLS-RPPARLCNESPV 388
>gi|240167694|ref|ZP_04746353.1| radical SAM domain-containing protein [Mycobacterium kansasii
ATCC 12478]
Length=394
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/394 (87%), Positives = 356/394 (91%), Gaps = 9/394 (2%)
Query 5 VPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERM 64
VPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSG+RDP ELSTRQCKDIIDELERM
Sbjct 3 VPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGRRDPRELSTRQCKDIIDELERM 62
Query 65 QVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQIS 124
QVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVA RLAA+DYVDVQIS
Sbjct 63 QVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVAVRLAASDYVDVQIS 122
Query 125 LDGATAEVNDAIRGTGSFDMAVRALQNLAAAGF---AGVKISVVITRRNVAQLDEFATLA 181
LDGATAEVNDA+RG GS+ MAVRALQNLA AGF KISVV+TR NV QLDEFA LA
Sbjct 123 LDGATAEVNDAVRGAGSYAMAVRALQNLAEAGFGETGAAKISVVVTRHNVGQLDEFAALA 182
Query 182 SRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQ 241
SRYGATLRITRLRPSGRG DVW DLHPTA QQVQLYDWLV GERVLTGDSFFHL+PLG+
Sbjct 183 SRYGATLRITRLRPSGRGADVWDDLHPTAAQQVQLYDWLVLNGERVLTGDSFFHLSPLGE 242
Query 242 SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDG----GFQNVWKNSSL 297
SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVL D GF+NVWKN+ L
Sbjct 243 SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLCDSGFGTGFENVWKNAPL 302
Query 298 FRELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLP 357
FRELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGH PALAR+R P
Sbjct 303 FRELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHGAPALARQREAP 362
Query 358 RPRADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
RPR DHS R+ S+PVPLTL++RPP R CNESP+
Sbjct 363 RPRVDHS--RKTSRPVPLTLNVRPPARLCNESPL 394
>gi|108797974|ref|YP_638171.1| radical SAM family protein [Mycobacterium sp. MCS]
gi|119867070|ref|YP_937022.1| radical SAM domain-containing protein [Mycobacterium sp. KMS]
gi|126433636|ref|YP_001069327.1| radical SAM domain-containing protein [Mycobacterium sp. JLS]
gi|108768393|gb|ABG07115.1| Radical SAM [Mycobacterium sp. MCS]
gi|119693159|gb|ABL90232.1| Radical SAM domain protein [Mycobacterium sp. KMS]
gi|126233436|gb|ABN96836.1| Radical SAM domain protein [Mycobacterium sp. JLS]
Length=401
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/389 (84%), Positives = 353/389 (91%), Gaps = 0/389 (0%)
Query 3 SPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELE 62
+PVPRL++QFERGLDAPICLTWELTYACNL+CVHCLSSSGKRDP ELST+QCKDIIDELE
Sbjct 13 APVPRLVDQFERGLDAPICLTWELTYACNLSCVHCLSSSGKRDPRELSTQQCKDIIDELE 72
Query 63 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQ 122
RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPE+A +LAA+DYVDVQ
Sbjct 73 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEIAAKLAASDYVDVQ 132
Query 123 ISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLAS 182
ISLDGATAE+NDA+RG GSF MA RAL+NLAAAGF KISVV+TR NV QLD+FA LAS
Sbjct 133 ISLDGATAEINDAVRGPGSFAMAERALENLAAAGFKDAKISVVVTRHNVGQLDDFAALAS 192
Query 183 RYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQS 242
RYGATLRITRLRPSGRG DVW DLHPTA+QQVQLY+WLV+KGERVLTGDSFFHL+ LG+
Sbjct 193 RYGATLRITRLRPSGRGADVWDDLHPTAEQQVQLYNWLVAKGERVLTGDSFFHLSGLGEP 252
Query 243 GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELR 302
GALAGLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGN+LSD GFQNVW+NS LFRELR
Sbjct 253 GALAGLNLCGAGRVVCLIDPVGDVYACPFAIHDKFLAGNILSDTGFQNVWQNSELFRELR 312
Query 303 EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRAD 362
EPQSAGAC C HYD+CRGGCMAAKFFTGLPLDGPDPECVQG+ PAL +R P+P D
Sbjct 313 EPQSAGACSGCDHYDACRGGCMAAKFFTGLPLDGPDPECVQGYGAPALEVDRVKPKPGGD 372
Query 363 HSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
HSRG +++ P+PL L +PP R CNESPV
Sbjct 373 HSRGTKLTGPIPLKLLTKPPARLCNESPV 401
>gi|118616557|ref|YP_904889.1| coenzyme PQQ synthesis protein E, PqqE [Mycobacterium ulcerans
Agy99]
gi|118568667|gb|ABL03418.1| coenzyme PQQ synthesis protein E, PqqE [Mycobacterium ulcerans
Agy99]
Length=369
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/368 (89%), Positives = 341/368 (93%), Gaps = 0/368 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
MT+ VPRLIEQFE GLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQC+DIIDE
Sbjct 1 MTTAVPRLIEQFEHGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCQDIIDE 60
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRI PEVA RLAA+D VD
Sbjct 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRINPEVAARLAASDCVD 120
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDA+RG GSF MAVRAL+NLAAAGFA KISVV+TR NV QLD+FA L
Sbjct 121 VQISLDGATAEVNDAVRGAGSFAMAVRALENLAAAGFADAKISVVVTRHNVGQLDDFAAL 180
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A RYGATLRITRLRPSGRG DVW +LHPTA QQV LYDWLV+KGERVLTGDSFFHLAPLG
Sbjct 181 ADRYGATLRITRLRPSGRGADVWEELHPTAAQQVALYDWLVAKGERVLTGDSFFHLAPLG 240
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVL+DGGF VWKN+ LFR+
Sbjct 241 SSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLTDGGFDQVWKNAPLFRQ 300
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQG+ PALA+ERH PRPR
Sbjct 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGYGAPALAQERHAPRPR 360
Query 361 ADHSRGRR 368
DHSRG R
Sbjct 361 VDHSRGSR 368
>gi|118470885|ref|YP_885806.1| radical SAM domain-containing protein [Mycobacterium smegmatis
str. MC2 155]
gi|118172172|gb|ABK73068.1| radical SAM domain protein [Mycobacterium smegmatis str. MC2
155]
Length=392
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/393 (84%), Positives = 353/393 (90%), Gaps = 3/393 (0%)
Query 1 MTS--PVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDII 58
MTS PVPRL+EQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDP ELST+QCKDII
Sbjct 1 MTSVQPVPRLVEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTQQCKDII 60
Query 59 DELERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDY 118
DELERMQVFYVNIGGGEPTVR DFWELVDYATAHHVGVKFSTNGVRITPEVA +LAA+DY
Sbjct 61 DELERMQVFYVNIGGGEPTVRSDFWELVDYATAHHVGVKFSTNGVRITPEVAAKLAASDY 120
Query 119 VDVQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFA 178
VDVQISLDGA AEVNDA+RG GSFDMAVRAL+NL+ AGF KISVV+TR+NV QLDEFA
Sbjct 121 VDVQISLDGANAEVNDAVRGKGSFDMAVRALENLSNAGFTDAKISVVVTRQNVDQLDEFA 180
Query 179 TLASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAP 238
LA+RYGATLRITRLRPSGRG DVW DLHPTA+QQ QLYDWLV+KG+RVLTGDSFFHL+
Sbjct 181 ALAARYGATLRITRLRPSGRGADVWDDLHPTAEQQRQLYDWLVAKGDRVLTGDSFFHLSG 240
Query 239 LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLF 298
LG GALAGLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGN+LSDGGFQNVW++S LF
Sbjct 241 LGAPGALAGLNLCGAGRVVCLIDPVGDVYACPFAIHDKFLAGNILSDGGFQNVWQHSELF 300
Query 299 RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPR 358
RELREPQSAGAC SCGH+D+CRGGCMAAKFFTGLPLDGPDPECV+G PAL +ER P+
Sbjct 301 RELREPQSAGACASCGHFDACRGGCMAAKFFTGLPLDGPDPECVEGWGAPALEKERVKPK 360
Query 359 PRADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
P DHSRG + PV L L +PP R CNESPV
Sbjct 361 PSGDHSRGTK-QGPVALKLLTKPPARFCNESPV 392
>gi|120402307|ref|YP_952136.1| radical SAM domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119955125|gb|ABM12130.1| Radical SAM domain protein [Mycobacterium vanbaalenii PYR-1]
Length=395
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/393 (82%), Positives = 345/393 (88%), Gaps = 2/393 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
+ +PVPRL++QFERGLDAPICLTWELTYACNL+CVHCLSSSGKRDP ELSTRQCKDIIDE
Sbjct 3 LAAPVPRLVDQFERGLDAPICLTWELTYACNLSCVHCLSSSGKRDPRELSTRQCKDIIDE 62
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVR DFWELVDYAT HHVGVKFSTNGVRITPEVA +LAA+DYVD
Sbjct 63 LERMQVFYVNIGGGEPTVRSDFWELVDYATEHHVGVKFSTNGVRITPEVAAKLAASDYVD 122
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVND +RG GSF MAVRAL+NL AAGF KISVV+TR N+ QLD+F L
Sbjct 123 VQISLDGATAEVNDTVRGPGSFAMAVRALENLKAAGFKDAKISVVVTRHNIDQLDDFKAL 182
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A YGATLRITRLRPSGRG DVW +LHPT QQVQLYDWLV+ GERVLTGDSFFHL+ LG
Sbjct 183 ADTYGATLRITRLRPSGRGADVWDELHPTPAQQVQLYDWLVAHGERVLTGDSFFHLSGLG 242
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
+ GALAGLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGNVLSDGGF VWK+S LFRE
Sbjct 243 EPGALAGLNLCGAGRVVCLIDPVGDVYACPFAIHDKFLAGNVLSDGGFDTVWKHSELFRE 302
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQSAGAC CGHYD+CRGGCMAAKFFTGLP+DGPDPECVQG+ EPALA +R PR
Sbjct 303 LREPQSAGACSGCGHYDACRGGCMAAKFFTGLPMDGPDPECVQGYGEPALALDRDKPRSS 362
Query 361 ADHSR--GRRVSKPVPLTLSMRPPKRPCNESPV 391
DHSR GR P+PLTL PPK+ CNESPV
Sbjct 363 VDHSRSGGRTPKGPIPLTLLSAPPKKFCNESPV 395
>gi|169630914|ref|YP_001704563.1| coenzyme PQQ synthesis protein E PqqE [Mycobacterium abscessus
ATCC 19977]
gi|169242881|emb|CAM63909.1| Probable coenzyme PQQ synthesis protein E PqqE [Mycobacterium
abscessus]
Length=414
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/391 (82%), Positives = 343/391 (88%), Gaps = 5/391 (1%)
Query 6 PRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQ 65
P+L++QFE+GLDAPICLTWELTYACNL+CVHCLSSSGKRDP ELST+QCKDIIDELERMQ
Sbjct 17 PKLVDQFEQGLDAPICLTWELTYACNLSCVHCLSSSGKRDPRELSTQQCKDIIDELERMQ 76
Query 66 VFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISL 125
VFYVNIGGGEPTVR DFWELVDYAT HHVGVKFSTNGVRIT EVA RLAA+DYVDVQISL
Sbjct 77 VFYVNIGGGEPTVRSDFWELVDYATEHHVGVKFSTNGVRITEEVAARLAASDYVDVQISL 136
Query 126 DGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYG 185
DGATAEVNDA+RG GSFDMAVRAL+NLAAAGF KISVV+TR NV QLDEFA+LA+RYG
Sbjct 137 DGATAEVNDAVRGAGSFDMAVRALENLAAAGFKDAKISVVVTRHNVDQLDEFASLAARYG 196
Query 186 ATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQ-SGA 244
ATLRITRLRPSGRG DVW +LHPTA QQ QLYDWLV GERVLTGDSFFHL+ G SG
Sbjct 197 ATLRITRLRPSGRGADVWDELHPTAAQQRQLYDWLVRNGERVLTGDSFFHLSAYGDGSGG 256
Query 245 LAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREP 304
L GLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVLSD GF VWK+S LF ELREP
Sbjct 257 LPGLNMCGAGRVVCLIDPVGDVYACPFAIHDRFLAGNVLSDNGFDQVWKHSQLFSELREP 316
Query 305 QSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRADHS 364
QSAGACGSCGHYDSCRGGCMAAKFFTGLP+DGPDPECVQG+ E ALA +R +P+P DHS
Sbjct 317 QSAGACGSCGHYDSCRGGCMAAKFFTGLPMDGPDPECVQGYGEAALAADRVVPKPSGDHS 376
Query 365 RGRR----VSKPVPLTLSMRPPKRPCNESPV 391
+ + PV LTL+ RPP R C+E+P+
Sbjct 377 HSKSKRGPATGPVALTLTRRPPSRACDENPL 407
>gi|145225636|ref|YP_001136314.1| radical SAM domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218122|gb|ABP47526.1| Radical SAM domain protein [Mycobacterium gilvum PYR-GCK]
Length=396
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/394 (80%), Positives = 344/394 (88%), Gaps = 3/394 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
+ +PVPRL++QFERGLDAPICLTWELTYACNL+CVHCLSSSGKRDP ELST+QCKDIIDE
Sbjct 3 LAAPVPRLVDQFERGLDAPICLTWELTYACNLSCVHCLSSSGKRDPRELSTQQCKDIIDE 62
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVR DFWELVDYAT HHVGVKFSTNGVRI VA +LAA+DYVD
Sbjct 63 LERMQVFYVNIGGGEPTVRSDFWELVDYATEHHVGVKFSTNGVRIDKTVAAKLAASDYVD 122
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDA+RG GSF MAVRAL+NL AGF KISVV+TR N+ QLD+F L
Sbjct 123 VQISLDGATAEVNDAVRGPGSFAMAVRALENLKEAGFKDAKISVVVTRHNIDQLDDFKAL 182
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A YGATLRITRLRPSGRG DVW DLHPTADQQVQLY+WLV+ GERVLTGDSFFHL+ LG
Sbjct 183 ADTYGATLRITRLRPSGRGADVWDDLHPTADQQVQLYNWLVAHGERVLTGDSFFHLSGLG 242
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
+ GALAGLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGN+L+ GF++VW+NS LFRE
Sbjct 243 EPGALAGLNLCGAGRVVCLIDPVGDVYACPFAIHDKFLAGNILTSNGFEDVWQNSELFRE 302
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQSAGAC C HYD+CRGGCMAAKFFTGLP+DGPDPECVQG+ EPALA +R P+
Sbjct 303 LREPQSAGACSGCNHYDACRGGCMAAKFFTGLPMDGPDPECVQGYGEPALAADRDKPKSS 362
Query 361 ADHSR--GRRVSK-PVPLTLSMRPPKRPCNESPV 391
DHSR GR K P+PLTL PPK+ CNESPV
Sbjct 363 VDHSRSGGRGKPKGPIPLTLLSAPPKKFCNESPV 396
>gi|315445988|ref|YP_004078867.1| Fe-S oxidoreductase [Mycobacterium sp. Spyr1]
gi|315264291|gb|ADU01033.1| predicted Fe-S oxidoreductase [Mycobacterium sp. Spyr1]
Length=396
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/394 (80%), Positives = 344/394 (88%), Gaps = 3/394 (0%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
+ +PVPRL++QFERGLDAPICLTWELTYACNL+CVHCLSSSGKRDP ELST+QCKDIIDE
Sbjct 3 LAAPVPRLVDQFERGLDAPICLTWELTYACNLSCVHCLSSSGKRDPRELSTQQCKDIIDE 62
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVR DFWELVDYAT HHVGVKFSTNGVRI VA +LAA+DYVD
Sbjct 63 LERMQVFYVNIGGGEPTVRSDFWELVDYATEHHVGVKFSTNGVRIDKTVAAKLAASDYVD 122
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDA+RG GSF MAVRAL+NL AGF KISVV+TR N+ QLD+F L
Sbjct 123 VQISLDGATAEVNDAVRGPGSFAMAVRALENLKEAGFKDAKISVVVTRHNIDQLDDFKAL 182
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A YGATLRITRLRPSGRG DVW DLHPTADQQVQLY+WLV+ GERVLTGDSFFHL+ LG
Sbjct 183 ADIYGATLRITRLRPSGRGADVWDDLHPTADQQVQLYNWLVAHGERVLTGDSFFHLSGLG 242
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
+ GALAGLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGN+L+ GF++VW+NS LFRE
Sbjct 243 EPGALAGLNLCGAGRVVCLIDPVGDVYACPFAIHDKFLAGNILTSNGFEDVWQNSELFRE 302
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LREPQSAGAC C HYD+CRGGCMAAKFFTGLP+DGPDPECVQG+ EPALA +R P+
Sbjct 303 LREPQSAGACSGCNHYDACRGGCMAAKFFTGLPMDGPDPECVQGYGEPALAADRDKPKSS 362
Query 361 ADHSR--GRRVSK-PVPLTLSMRPPKRPCNESPV 391
DHSR GR K P+PLTL PPK+ CNESPV
Sbjct 363 VDHSRSGGRGKPKGPIPLTLLSAPPKKFCNESPV 396
>gi|333991988|ref|YP_004524602.1| coenzyme PQQ synthesis protein E PqqE [Mycobacterium sp. JDM601]
gi|333487956|gb|AEF37348.1| coenzyme PQQ synthesis protein E PqqE [Mycobacterium sp. JDM601]
Length=395
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/395 (81%), Positives = 344/395 (88%), Gaps = 4/395 (1%)
Query 1 MTSPV--PRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDII 58
MT+P P L+E FE GL++PICLTWELTYACNLACVHCLS+SG+RDP ELSTR CKDII
Sbjct 1 MTAPAVAPSLVEHFEHGLESPICLTWELTYACNLACVHCLSASGRRDPRELSTRACKDII 60
Query 59 DELERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDY 118
DELERMQVFYVNIGGGEPTVR DFWELVDYATAHHVGVKFSTNG+RITPEVA RLAA+DY
Sbjct 61 DELERMQVFYVNIGGGEPTVRDDFWELVDYATAHHVGVKFSTNGLRITPEVAARLAASDY 120
Query 119 VDVQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFA 178
VDVQISLDGATAEVND IRG GSFDMAVRAL+NL+AAGFA KISVV TR N+ QLD+FA
Sbjct 121 VDVQISLDGATAEVNDPIRGKGSFDMAVRALENLSAAGFADTKISVVATRHNIDQLDDFA 180
Query 179 TLASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAP 238
LA+RYGATLRITRLRPSGRG DVW DLHPTA QQ QLYDWLV+KG+ VLTGDSFFHLAP
Sbjct 181 ALAARYGATLRITRLRPSGRGVDVWDDLHPTAAQQRQLYDWLVAKGDGVLTGDSFFHLAP 240
Query 239 LGQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLF 298
LG+SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHD FLAGNVL+DGGF VWK+S LF
Sbjct 241 LGESGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDQFLAGNVLTDGGFDQVWKHSKLF 300
Query 299 RELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPR 358
ELR P + GAC SC YD+CRGGCMAAKFFTGLP+DGPDPECV+G E ALA +R PR
Sbjct 301 NELRSPTAGGACASCPLYDTCRGGCMAAKFFTGLPMDGPDPECVRGFGEQALAGDRQKPR 360
Query 359 PRADHSRGRRVSKPVPLTL--SMRPPKRPCNESPV 391
P +DHSRG+R S LTL +PPKR C+ESPV
Sbjct 361 PSSDHSRGKRSSTRQSLTLLNPAKPPKRLCDESPV 395
>gi|326384860|ref|ZP_08206535.1| Radical SAM domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326196379|gb|EGD53578.1| Radical SAM domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=430
Score = 629 bits (1623), Expect = 2e-178, Method: Compositional matrix adjust.
Identities = 305/398 (77%), Positives = 335/398 (85%), Gaps = 13/398 (3%)
Query 1 MTSPVP----RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKD 56
+T P P RL++QFERGLDAPICLTWELTYACNL+CVHCLSSSGKRDP ELST QCK
Sbjct 22 LTVPAPPKVGRLVDQFERGLDAPICLTWELTYACNLSCVHCLSSSGKRDPRELSTEQCKA 81
Query 57 IIDELERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAAT 116
IIDEL+RMQVFYVNIGGGEPTVRPDFWELVDYAT H VGVKFSTNG+RITPEVA RLAA+
Sbjct 82 IIDELQRMQVFYVNIGGGEPTVRPDFWELVDYATDHQVGVKFSTNGLRITPEVAQRLAAS 141
Query 117 DYVDVQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDE 176
DYVDVQISLDGA AEVNDA+RG GSFDMAVRAL+NLA AGF KISVV+TR NVAQLDE
Sbjct 142 DYVDVQISLDGADAEVNDAVRGPGSFDMAVRALENLADAGFKDAKISVVMTRHNVAQLDE 201
Query 177 FATLASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHL 236
F LA RYGATLRITRLRPSGRG DVW DLHP +QQ +LY+WLV+ G+RVLTGDSFFHL
Sbjct 202 FKALADRYGATLRITRLRPSGRGADVWDDLHPLPEQQRELYEWLVAHGDRVLTGDSFFHL 261
Query 237 APLGQS---GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWK 293
+ +S G L GLN+CGAGRVVCLIDP+GDVYACPFAIH++FLAGN+ +DGGFQ +W+
Sbjct 262 SAFAESGTGGGLPGLNLCGAGRVVCLIDPIGDVYACPFAIHENFLAGNITTDGGFQEIWQ 321
Query 294 NSSLFRELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARE 353
S LF ELREPQSAGAC SC HYD+CRGGCMAAKFFTGLPLDGPDPECVQG+ E LA E
Sbjct 322 RSDLFTELREPQSAGACASCNHYDACRGGCMAAKFFTGLPLDGPDPECVQGYGESLLAGE 381
Query 354 RHLPRPRADHSRGRRVSKPVPLTLSMRPPKRPCNESPV 391
R P DHSRG VPLTL RPP R C+E+P+
Sbjct 382 RSKPTANKDHSRG------VPLTLMTRPPSRDCDENPL 413
>gi|319951172|ref|ZP_08025016.1| radical SAM protein [Dietzia cinnamea P4]
gi|319435160|gb|EFV90436.1| radical SAM protein [Dietzia cinnamea P4]
Length=419
Score = 629 bits (1621), Expect = 3e-178, Method: Compositional matrix adjust.
Identities = 305/397 (77%), Positives = 335/397 (85%), Gaps = 10/397 (2%)
Query 5 VPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERM 64
V RL++QFERGLDAPICLTWELTYACNL+CVHCLSSSGKRDP ELST QCK IIDEL++M
Sbjct 23 VGRLVDQFERGLDAPICLTWELTYACNLSCVHCLSSSGKRDPRELSTEQCKAIIDELQKM 82
Query 65 QVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQIS 124
QVFYVNIGGGEPTVR DFWELVDYAT+H VGVKFSTNGVRI +VA RLAA+DYVDVQIS
Sbjct 83 QVFYVNIGGGEPTVRSDFWELVDYATSHQVGVKFSTNGVRIDEKVARRLAASDYVDVQIS 142
Query 125 LDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRY 184
LDGATAEVNDA+RG GSFDMAVRALQNL AGF KISVV+TR NV QLDEF LA RY
Sbjct 143 LDGATAEVNDAVRGPGSFDMAVRALQNLKDAGFTDAKISVVVTRENVTQLDEFKALADRY 202
Query 185 GATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQ-SG 243
ATLRITRLRPSGRG DVW DLHP +QQ LYDWLV+ E VLTGDSFFHL+ G G
Sbjct 203 DATLRITRLRPSGRGADVWDDLHPLPEQQKDLYDWLVAHSENVLTGDSFFHLSAFGDGQG 262
Query 244 ALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELRE 303
+L GLN+CGAGRVVCLIDP+GDVYACPFAIHD+FLAGNV++DGGF++VW+ S LFRELRE
Sbjct 263 SLPGLNLCGAGRVVCLIDPIGDVYACPFAIHDNFLAGNVVADGGFESVWQTSELFRELRE 322
Query 304 PQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRADH 363
PQSAGACGSCG YDSCRGGCMAAKFFTGLP+DGPDPECVQGH E LA ER +P P DH
Sbjct 323 PQSAGACGSCGFYDSCRGGCMAAKFFTGLPMDGPDPECVQGHGEGLLAAERAIPAPSQDH 382
Query 364 SRGRRVSK------PVPLTLSMRPPKRP---CNESPV 391
SR + ++ PVPLTL PP+RP C+ESP+
Sbjct 383 SRTKGLAARKQPAGPVPLTLITTPPRRPTSLCDESPI 419
>gi|312140959|ref|YP_004008295.1| radical sam protein [Rhodococcus equi 103S]
gi|325675404|ref|ZP_08155088.1| MoaA/nifB/pqqE family protein [Rhodococcus equi ATCC 33707]
gi|311890298|emb|CBH49616.1| radical SAM protein [Rhodococcus equi 103S]
gi|325553375|gb|EGD23053.1| MoaA/nifB/pqqE family protein [Rhodococcus equi ATCC 33707]
Length=416
Score = 614 bits (1583), Expect = 8e-174, Method: Compositional matrix adjust.
Identities = 293/397 (74%), Positives = 332/397 (84%), Gaps = 8/397 (2%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
+ V RL++QFE GLDAPICLTWELTYACNL+CVHCLSSSG+RDP ELST QCK IIDE
Sbjct 18 LVPKVGRLVDQFELGLDAPICLTWELTYACNLSCVHCLSSSGRRDPRELSTEQCKSIIDE 77
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
L+RMQVFYVNIGGGEPTVR DFWELVDYAT H VGVKFSTNGV+I +VA RLAA+DYVD
Sbjct 78 LQRMQVFYVNIGGGEPTVRSDFWELVDYATEHQVGVKFSTNGVKIDKKVAARLAASDYVD 137
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVNDA+RG GSF MAVRAL+NLA AGF KISVV+TR NV+QLDEF L
Sbjct 138 VQISLDGATAEVNDAVRGPGSFAMAVRALENLAEAGFKDAKISVVVTRENVSQLDEFKEL 197
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A R+GATLRITRLRPSGRG DVW +LHPT +QQ +LYDWLV+ GE VLTGDSFFHL+ G
Sbjct 198 ADRFGATLRITRLRPSGRGADVWDELHPTQEQQRELYDWLVANGEGVLTGDSFFHLSAYG 257
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
AL GLN+CGAGRVVCLIDP+GDVYACPFAIHD FLAGN++SDGGFQ VW++S LF++
Sbjct 258 D--ALPGLNLCGAGRVVCLIDPIGDVYACPFAIHDQFLAGNIVSDGGFQQVWQHSELFQD 315
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPR 360
LR PQ+ GAC C HYDSCRGGCMAAKFFTGLP+DGPDPECVQG+ AL +R +P+
Sbjct 316 LRSPQTGGACSKCDHYDSCRGGCMAAKFFTGLPMDGPDPECVQGYGTSALEADRTVPKSS 375
Query 361 ADHSR-GRRVSK-----PVPLTLSMRPPKRPCNESPV 391
DHSR G+R + PVPLTL RPP + C+E+P+
Sbjct 376 QDHSRTGKRAERRTPQAPVPLTLLTRPPAKICDENPL 412
>gi|226365539|ref|YP_002783322.1| hypothetical protein ROP_61300 [Rhodococcus opacus B4]
gi|226244029|dbj|BAH54377.1| hypothetical protein [Rhodococcus opacus B4]
Length=405
Score = 611 bits (1576), Expect = 6e-173, Method: Compositional matrix adjust.
Identities = 292/392 (75%), Positives = 332/392 (85%), Gaps = 5/392 (1%)
Query 3 SPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELE 62
+PV RL++QFE GLDAPICLTWELTYACNL+CVHCLSSSG+RDP ELST QCK IIDEL+
Sbjct 10 APVGRLVDQFELGLDAPICLTWELTYACNLSCVHCLSSSGRRDPRELSTEQCKSIIDELQ 69
Query 63 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQ 122
RMQVFYVNIGGGEPTVR DFWELVDYATAH VGVKFSTNGV+I +VA RLAA+DYVDVQ
Sbjct 70 RMQVFYVNIGGGEPTVRSDFWELVDYATAHQVGVKFSTNGVKIDKKVAARLAASDYVDVQ 129
Query 123 ISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLAS 182
ISLDGATAEVNDA+RG GSF MAVRAL+NL+ AGF KISVV+TR NV+QLD+F LA
Sbjct 130 ISLDGATAEVNDAVRGPGSFAMAVRALENLSEAGFKDAKISVVVTRHNVSQLDDFKALAD 189
Query 183 RYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQS 242
+YGATLRITRLRPSGRG DVW +LHPT QQ +LY+WLV+ GE VLTGDSFFHL+ G
Sbjct 190 KYGATLRITRLRPSGRGADVWDELHPTQAQQRELYNWLVANGEGVLTGDSFFHLSAYGD- 248
Query 243 GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELR 302
AL GLN+CGAGRVVCLIDP+GDVYACPFAIHD FLAGN+++DGGFQ VW+ S LF+ELR
Sbjct 249 -ALPGLNLCGAGRVVCLIDPIGDVYACPFAIHDQFLAGNIVADGGFQQVWQTSELFQELR 307
Query 303 EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRAD 362
PQ+ GAC C HYDSCRGGCMAAKFFTGLP+DGPDPECV G+ E ALA +P+ D
Sbjct 308 SPQTGGACSKCNHYDSCRGGCMAAKFFTGLPMDGPDPECVIGNGELALAAAGEIPKSSVD 367
Query 363 HSR-GRRVS--KPVPLTLSMRPPKRPCNESPV 391
HSR G+R + PVPLTL +RPP + C+E+P+
Sbjct 368 HSRTGQRRTPRAPVPLTLMVRPPAKICDENPL 399
>gi|111023035|ref|YP_706007.1| coenzyme synthesis protein [Rhodococcus jostii RHA1]
gi|110822565|gb|ABG97849.1| possible coenzyme synthesis protein [Rhodococcus jostii RHA1]
Length=405
Score = 610 bits (1573), Expect = 1e-172, Method: Compositional matrix adjust.
Identities = 291/393 (75%), Positives = 333/393 (85%), Gaps = 5/393 (1%)
Query 2 TSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDEL 61
++PV RL++QFE GLDAPICLTWELTYACNL+CVHCLSSSG+RDP ELST QCK IIDEL
Sbjct 9 SAPVGRLVDQFELGLDAPICLTWELTYACNLSCVHCLSSSGRRDPRELSTEQCKSIIDEL 68
Query 62 ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDV 121
+RMQVFYVNIGGGEPTVR DFWELVDYATAH VGVKFSTNGV+I +VA RLAA+DYVDV
Sbjct 69 QRMQVFYVNIGGGEPTVRSDFWELVDYATAHQVGVKFSTNGVKIDKKVAARLAASDYVDV 128
Query 122 QISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLA 181
QISLDGATAEVNDA+RG GSF MAVRAL+NL+ AGF KISVV+TR NV+QLD+F LA
Sbjct 129 QISLDGATAEVNDAVRGPGSFAMAVRALENLSEAGFKDAKISVVVTRHNVSQLDDFKALA 188
Query 182 SRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQ 241
+YGATLRITRLRPSGRG DVW +LHPT QQ +LY+WLV+ GE VLTGDSFFHL+ G
Sbjct 189 DKYGATLRITRLRPSGRGADVWDELHPTQAQQRELYNWLVANGEGVLTGDSFFHLSAYGD 248
Query 242 SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFREL 301
AL GLN+CGAGRVVCLIDP+GDVYACPFAIH+ FLAGN+++DGGFQ VW+ S LF+EL
Sbjct 249 --ALPGLNLCGAGRVVCLIDPIGDVYACPFAIHEQFLAGNIVADGGFQQVWQTSELFQEL 306
Query 302 REPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRA 361
R PQ+ GAC C HYDSCRGGCMAAKFFTGLP+DGPDPECV G+ E ALA +P+
Sbjct 307 RSPQTGGACSKCNHYDSCRGGCMAAKFFTGLPMDGPDPECVIGNGELALAAAGEIPKSSV 366
Query 362 DHSR-GRRVS--KPVPLTLSMRPPKRPCNESPV 391
DHSR G+R + PVPLTL +RPP + C+E+P+
Sbjct 367 DHSRTGQRRTPRAPVPLTLMVRPPAKICDENPL 399
>gi|158315127|ref|YP_001507635.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
gi|158110532|gb|ABW12729.1| Radical SAM domain protein [Frankia sp. EAN1pec]
Length=396
Score = 600 bits (1548), Expect = 1e-169, Method: Compositional matrix adjust.
Identities = 292/394 (75%), Positives = 327/394 (83%), Gaps = 6/394 (1%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
M++P+P L+EQF+ GLDAPICLTWELTYACNLACVHCLSSSG+RDP ELST +CK +IDE
Sbjct 1 MSTPLP-LVEQFQYGLDAPICLTWELTYACNLACVHCLSSSGRRDPRELSTAECKAVIDE 59
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVR DFWELVDYATAHHVGVKFSTNGVRITPEVA RLAA+DYVD
Sbjct 60 LERMQVFYVNIGGGEPTVRSDFWELVDYATAHHVGVKFSTNGVRITPEVAARLAASDYVD 119
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGAT VNDA+RG GS+ A+RA+ NLAAAGF G K+SVV+TR N QLDEF +
Sbjct 120 VQISLDGATEAVNDAVRGPGSYQTAMRAMANLAAAGFRGFKLSVVVTRHNAGQLDEFKAI 179
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A R+GA LR+TRLRPSGRG DVW +LHPTA QQ +LYDWLV+ GERVLTGDSFFHLA G
Sbjct 180 ADRFGAQLRLTRLRPSGRGADVWDELHPTAAQQRELYDWLVAHGERVLTGDSFFHLAAYG 239
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
AL GLN+CGAGRVVCLIDPVGDVYACPFAIHD F AGNV +GGF VW+ S LF +
Sbjct 240 D--ALPGLNLCGAGRVVCLIDPVGDVYACPFAIHDSFRAGNVRGEGGFTGVWRTSELFAD 297
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARE--RHLPR 358
LR+PQ+ GAC SC +D+CRGGCMAAKFFTGLPLDGPDPECV+GH ALA +P+
Sbjct 298 LRQPQTGGACTSCSAFDACRGGCMAAKFFTGLPLDGPDPECVKGHGAAALAAVDLELVPK 357
Query 359 PRADHSR-GRRVSKPVPLTLSMRPPKRPCNESPV 391
P DHSR R S PVP+T+ RPP R C ESP+
Sbjct 358 PSLDHSRPASRRSGPVPVTIGARPPDRACEESPL 391
>gi|226305288|ref|YP_002765246.1| hypothetical protein RER_17990 [Rhodococcus erythropolis PR4]
gi|229490756|ref|ZP_04384594.1| radical SAM domain protein [Rhodococcus erythropolis SK121]
gi|226184403|dbj|BAH32507.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229322576|gb|EEN88359.1| radical SAM domain protein [Rhodococcus erythropolis SK121]
Length=405
Score = 600 bits (1547), Expect = 1e-169, Method: Compositional matrix adjust.
Identities = 287/390 (74%), Positives = 321/390 (83%), Gaps = 5/390 (1%)
Query 5 VPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERM 64
V RL++QFE GLDAPICLTWELTYACNL+CVHCLSSSG+RDP ELST QCK IIDEL+RM
Sbjct 14 VGRLVDQFELGLDAPICLTWELTYACNLSCVHCLSSSGRRDPNELSTEQCKSIIDELQRM 73
Query 65 QVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQIS 124
QVFYVNIGGGEPTVR DFWELVDYAT H VGVKFSTNGV+I +VA RLAA+DYVDVQIS
Sbjct 74 QVFYVNIGGGEPTVRSDFWELVDYATDHQVGVKFSTNGVKIDKKVAARLAASDYVDVQIS 133
Query 125 LDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRY 184
+DGATAEVNDA+RG GSF MA RAL NL AGF KISVV+TR NV+QLDEF LA +Y
Sbjct 134 IDGATAEVNDAVRGPGSFAMAERALANLKEAGFKDAKISVVVTRHNVSQLDEFKALADKY 193
Query 185 GATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGA 244
ATLRITRLRPSGRG DVW DLHP +QQ +LY+WLV+ GE VLTGDSFFHL+ G A
Sbjct 194 DATLRITRLRPSGRGADVWDDLHPRPEQQRELYNWLVANGEGVLTGDSFFHLSAFGD--A 251
Query 245 LAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREP 304
L GLN+CGAGRVVCLIDPVGDVYACPFAIH+ FLAGN++ DGGFQ VW++S LF ELR P
Sbjct 252 LPGLNLCGAGRVVCLIDPVGDVYACPFAIHEQFLAGNIVKDGGFQEVWQHSDLFEELRSP 311
Query 305 QSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRADHS 364
Q+ GAC C HYDSCRGGCMAAKFFTGLP+DGPDPECV G+ E ALA +P+ DHS
Sbjct 312 QTGGACSKCNHYDSCRGGCMAAKFFTGLPMDGPDPECVIGNGEMALASAGEVPKSSVDHS 371
Query 365 RGRRVSKP---VPLTLSMRPPKRPCNESPV 391
R + P VPLTL MRPP + C+E+P+
Sbjct 372 RSGQRKTPRASVPLTLMMRPPAKICDENPL 401
>gi|343927802|ref|ZP_08767270.1| hypothetical protein GOALK_097_02320 [Gordonia alkanivorans NBRC
16433]
gi|343762443|dbj|GAA14196.1| hypothetical protein GOALK_097_02320 [Gordonia alkanivorans NBRC
16433]
Length=429
Score = 599 bits (1545), Expect = 2e-169, Method: Compositional matrix adjust.
Identities = 298/399 (75%), Positives = 329/399 (83%), Gaps = 18/399 (4%)
Query 5 VPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERM 64
V RL++QFERGLDAPICLTWELTYACNLACVHCLSSSGKRDP ELST QCK IIDEL+RM
Sbjct 29 VGRLVDQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTEQCKAIIDELQRM 88
Query 65 QVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQIS 124
QVFYVNIGGGEPTVRPDFWELVDYAT+H VGVKFSTNG+RI +VA RLAA+DYVDVQIS
Sbjct 89 QVFYVNIGGGEPTVRPDFWELVDYATSHQVGVKFSTNGLRIDKKVAARLAASDYVDVQIS 148
Query 125 LDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRY 184
LDGATAEVNDA+RG GSFDMAVRAL+NLA AGF KISVV+TR+NVAQLDEF LA RY
Sbjct 149 LDGATAEVNDAVRGPGSFDMAVRALENLAEAGFKDAKISVVMTRQNVAQLDEFKALADRY 208
Query 185 GATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPL--GQS 242
ATLRITRLRPSGRG DVW DLHP +QQ +LYDWLV+ G+RVLTGDSFFHL+
Sbjct 209 DATLRITRLRPSGRGADVWDDLHPLPEQQRELYDWLVAHGDRVLTGDSFFHLSAFGGDSG 268
Query 243 GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELR 302
G L GLN+CGAGRVVCLIDPVGDVYACPFAIH++FLAGN+LSDGGFQ +W+ S LF ELR
Sbjct 269 GGLPGLNLCGAGRVVCLIDPVGDVYACPFAIHENFLAGNILSDGGFQEIWQRSDLFTELR 328
Query 303 EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRAD 362
EPQ+AGAC C H+D+CRGGCMAAKFFTGLPL GPDPECVQG+ E LA ER P D
Sbjct 329 EPQNAGACTKCAHFDACRGGCMAAKFFTGLPLAGPDPECVQGYGEELLAGERTKPTANKD 388
Query 363 HSRGRRVSKPVPLTL-SMRP---------PKRPCNESPV 391
HSRG PLTL + RP P + C+E+P+
Sbjct 389 HSRG------TPLTLMTRRPDGDLTPIGRPTKSCDENPL 421
>gi|3873402|gb|AAC77478.1| unknown [Rhodococcus erythropolis]
Length=405
Score = 598 bits (1541), Expect = 7e-169, Method: Compositional matrix adjust.
Identities = 286/392 (73%), Positives = 321/392 (82%), Gaps = 5/392 (1%)
Query 3 SPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELE 62
+ V RL++QFE GLDAPICLTWELTYACNL+CVHCLSSSG+RDP ELST QCK IIDEL+
Sbjct 12 AKVGRLVDQFELGLDAPICLTWELTYACNLSCVHCLSSSGRRDPNELSTEQCKSIIDELQ 71
Query 63 RMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQ 122
RMQVFYVNIGGGEPTVR DFWELVDYAT H VGVKFSTNGV+I +VA RLAA+DYVDVQ
Sbjct 72 RMQVFYVNIGGGEPTVRSDFWELVDYATDHQVGVKFSTNGVKIDKKVAARLAASDYVDVQ 131
Query 123 ISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLAS 182
IS+DGATAEVNDA+RG GSF MA RAL NL AGF KISVV+TR NV+QLDEF LA
Sbjct 132 ISIDGATAEVNDAVRGPGSFAMAERALANLKEAGFKDAKISVVVTRHNVSQLDEFKALAD 191
Query 183 RYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQS 242
+Y ATLRITRLR SGRG DVW DLHP +QQ +LY+WLV+ GE VLTGDSFFHL+ G
Sbjct 192 KYDATLRITRLRASGRGADVWDDLHPRPEQQRELYNWLVANGEGVLTGDSFFHLSAFGD- 250
Query 243 GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELR 302
AL GLN+CGAGRVVCLIDPVGDVYACPFAIH+ FLAGN++ DGGFQ VW++S LF ELR
Sbjct 251 -ALPGLNLCGAGRVVCLIDPVGDVYACPFAIHEQFLAGNIVKDGGFQEVWQHSDLFEELR 309
Query 303 EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRAD 362
PQ+ GAC C HYDSCRGGCMAAKFFTGLP+DGPDPECV G+ E ALA +P+ D
Sbjct 310 SPQTGGACSKCNHYDSCRGGCMAAKFFTGLPMDGPDPECVIGNGEMALASAGEVPKSSVD 369
Query 363 HSRGRRVSKP---VPLTLSMRPPKRPCNESPV 391
HSR + P VPLTL MRPP + C+E+P+
Sbjct 370 HSRSGQRKTPRASVPLTLMMRPPAKICDENPL 401
>gi|111222984|ref|YP_713778.1| coenzyme PQQ synthesis protein E [Frankia alni ACN14a]
gi|111150516|emb|CAJ62215.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis
protein E) [Frankia alni ACN14a]
Length=424
Score = 590 bits (1521), Expect = 1e-166, Method: Compositional matrix adjust.
Identities = 299/409 (74%), Positives = 328/409 (81%), Gaps = 20/409 (4%)
Query 1 MTSPVP-RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIID 59
MTS P RL++ F RGL APICLTWELTYACNLAC HCLSSSG+RDP EL+T +C+ +ID
Sbjct 1 MTSAAPARLVDHFARGLAAPICLTWELTYACNLACRHCLSSSGRRDPRELTTAECRAVID 60
Query 60 ELERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYV 119
ELERMQVFYVNIGGGEPTVR DFWELVDYATAHHVGVKFSTNGVRITPEVATRLAA+DYV
Sbjct 61 ELERMQVFYVNIGGGEPTVRADFWELVDYATAHHVGVKFSTNGVRITPEVATRLAASDYV 120
Query 120 DVQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFAT 179
DVQISLDGATAE+NDA+RG GS+D AVRA+ NLA AGF G K+SVV+TR NV QLD FA
Sbjct 121 DVQISLDGATAEINDAVRGAGSYDTAVRAMANLAEAGFRGFKLSVVVTRANVGQLDAFAA 180
Query 180 LASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPL 239
LA RYGA LR+TRLRPSGRG DVW +LHPTA QQ +LYDWLV+ GE VLTGDSFFHL+
Sbjct 181 LADRYGAQLRLTRLRPSGRGADVWDELHPTAAQQRELYDWLVAAGENVLTGDSFFHLSAY 240
Query 240 GQSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFR 299
GQ AL GLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGNV GGF VW+ S LF
Sbjct 241 GQ--ALPGLNLCGAGRVVCLIDPVGDVYACPFAIHDEFLAGNVRDAGGFTGVWRTSELFA 298
Query 300 ELREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPA-LAR-ERHLP 357
LREPQSAGAC SCGH+D+C+GGCMAAKFFTGLPLDGPDPECV GH A LAR + P
Sbjct 299 ALREPQSAGACASCGHFDACQGGCMAAKFFTGLPLDGPDPECVVGHGVDALLARGDTAPP 358
Query 358 RPRADHSR------GRR-VSKPVPLTLS--------MRPPKRPCNESPV 391
+P DHSR GRR S PVP+T+ PP C E P+
Sbjct 359 KPSVDHSRTVVRAAGRRGGSGPVPVTIGRAPSVLSPALPPVSACQEDPL 407
>gi|262203642|ref|YP_003274850.1| radical SAM protein [Gordonia bronchialis DSM 43247]
gi|262086989|gb|ACY22957.1| Radical SAM domain protein [Gordonia bronchialis DSM 43247]
Length=429
Score = 581 bits (1497), Expect = 8e-164, Method: Compositional matrix adjust.
Identities = 294/400 (74%), Positives = 325/400 (82%), Gaps = 19/400 (4%)
Query 5 VPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERM 64
V RL++QFE+GLDAPICLTWELTYACNLACVHCLSSSGKRDP ELST QCK IIDEL+RM
Sbjct 28 VGRLVDQFEKGLDAPICLTWELTYACNLACVHCLSSSGKRDPRELSTEQCKSIIDELQRM 87
Query 65 QVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQIS 124
QVFYVNIGGGEPTVRPDFWELVDYAT+H VGVKFSTNG+RI +VA RLAA+DYVDVQIS
Sbjct 88 QVFYVNIGGGEPTVRPDFWELVDYATSHQVGVKFSTNGLRIDKKVAARLAASDYVDVQIS 147
Query 125 LDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRY 184
LDGATAEVNDA+RG GSFDMAVRAL+NL AGF KISVV+TR+NV QLDEF LA RY
Sbjct 148 LDGATAEVNDAVRGPGSFDMAVRALENLHEAGFRDAKISVVMTRQNVEQLDEFKALADRY 207
Query 185 GATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPL--GQS 242
ATLRITRLRPSGRG DVW DLHP QQ LY+WLV+ G+RVLTGDSFFHL+ G
Sbjct 208 NATLRITRLRPSGRGADVWDDLHPLPSQQRDLYNWLVAHGDRVLTGDSFFHLSAFGSGNG 267
Query 243 GALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELR 302
G L GLN+CGAGRVVCLIDPVGDVYACPFAIH++FLAGN++S GGFQ +W+NS LF ELR
Sbjct 268 GGLPGLNLCGAGRVVCLIDPVGDVYACPFAIHENFLAGNIVSGGGFQEIWQNSDLFTELR 327
Query 303 EPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRAD 362
EPQ+AGAC C H+D+CRGGCMAAKFFTGLPL GPDPECVQG+ E LA ER P D
Sbjct 328 EPQNAGACTKCAHFDACRGGCMAAKFFTGLPLAGPDPECVQGYGEELLAGERTKPTANKD 387
Query 363 HSRGRRVSKPVPLTLSMR-----------PPKRPCNESPV 391
HSRG PLTL R PP + C+E+P+
Sbjct 388 HSRG------TPLTLMTRKPDGVLLPIGAPPSKSCDENPL 421
>gi|333922022|ref|YP_004495603.1| hypothetical protein AS9A_4370 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484243|gb|AEF42803.1| hypothetical protein AS9A_4370 [Amycolicicoccus subflavus DQS3-9A1]
Length=411
Score = 574 bits (1480), Expect = 9e-162, Method: Compositional matrix adjust.
Identities = 276/391 (71%), Positives = 321/391 (83%), Gaps = 9/391 (2%)
Query 8 LIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVF 67
L+EQFE GLDAPICLTWELTYACNLACVHCLSSSG+RDP EL+T QC+ +IDEL+RMQVF
Sbjct 13 LVEQFEYGLDAPICLTWELTYACNLACVHCLSSSGRRDPRELTTEQCEAVIDELQRMQVF 72
Query 68 YVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDG 127
YVNIGGGEPTVR DFW L++YA +H+VGVKFSTNGVRITP+ A LA+TDYVDVQISLDG
Sbjct 73 YVNIGGGEPTVRSDFWHLLEYAVSHNVGVKFSTNGVRITPDKARFLASTDYVDVQISLDG 132
Query 128 ATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGAT 187
ATA+VND +RG GSFDMA+RALQNL AGF KISVV+TR+NV QLDEF +A +GAT
Sbjct 133 ATADVNDHVRGPGSFDMAIRALQNLNDAGFRDAKISVVVTRQNVGQLDEFKAIADSFGAT 192
Query 188 LRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAG 247
LR+TRLRPSGRG DVW +LHPTA QQ +LY+WL+ G+ VLTGDSFFHLA G++ L G
Sbjct 193 LRLTRLRPSGRGADVWDELHPTAVQQRELYEWLLRAGDNVLTGDSFFHLAGFGET--LPG 250
Query 248 LNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSA 307
LN+CGAGRVVCLIDP+GDVYACPFAIHD FLAGN+L+DGGF +VW+ S LFR+LR PQ++
Sbjct 251 LNLCGAGRVVCLIDPIGDVYACPFAIHDQFLAGNILADGGFASVWQTSELFRDLRSPQTS 310
Query 308 GACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRADHSRG- 366
GAC SC +D CRGGCMAAKFFTGLPLDGPDPECVQG+ E AL +P+ DHS
Sbjct 311 GACTSCHAFDKCRGGCMAAKFFTGLPLDGPDPECVQGYGEAALESRGAIPKASQDHSHSA 370
Query 367 -----RRVSKPVPLTLSM-RPPKRPCNESPV 391
+R ++PV LTL PP R C E+P+
Sbjct 371 KPRPPKRKTEPVLLTLGKPAPPVRACAENPL 401
>gi|302526437|ref|ZP_07278779.1| radical SAM domain-containing protein [Streptomyces sp. AA4]
gi|302435332|gb|EFL07148.1| radical SAM domain-containing protein [Streptomyces sp. AA4]
Length=390
Score = 573 bits (1478), Expect = 1e-161, Method: Compositional matrix adjust.
Identities = 277/387 (72%), Positives = 316/387 (82%), Gaps = 9/387 (2%)
Query 8 LIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVF 67
L+++F+ GLDAPICLTWELTYACNL+CVHCLSSSG+RDP ELST +CK +IDE ERMQVF
Sbjct 3 LVDEFQFGLDAPICLTWELTYACNLSCVHCLSSSGRRDPRELSTAECKALIDEFERMQVF 62
Query 68 YVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDG 127
YVNIGGGEPTVR DFWELVDYAT HHVGVKFSTNG++IT +VA RLA +DYVDVQISLDG
Sbjct 63 YVNIGGGEPTVRSDFWELVDYATEHHVGVKFSTNGIKITEDVAKRLAGSDYVDVQISLDG 122
Query 128 ATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGAT 187
AT EVND +RG GS+ A+RA++NLAAAGF KISVV+TR+N QLD+F +A RYGA
Sbjct 123 ATEEVNDHVRGPGSYRTAIRAMENLAAAGFGNFKISVVVTRQNAGQLDDFKAIADRYGAQ 182
Query 188 LRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAG 247
LR+TRLRPSGRG DVW +LHPTA QQ +LYDWLV GE VLTGDSFFHLA G G L G
Sbjct 183 LRLTRLRPSGRGADVWDELHPTAAQQRELYDWLVKHGENVLTGDSFFHLAGYGD-GGLPG 241
Query 248 LNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSA 307
LN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGN +GGF VW+ S LF ELR PQS
Sbjct 242 LNLCGAGRVVCLIDPVGDVYACPFAIHDTFLAGNTRGEGGFARVWRESELFAELRSPQSG 301
Query 308 GACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALA--RERHLPRPRADHSR 365
GAC SC +D+CRGGCMAAKFFTGLPLDGPDPECV+GH E ALA +P+P DHS
Sbjct 302 GACTSCSAFDACRGGCMAAKFFTGLPLDGPDPECVRGHGERALAGVAAGSVPKPSLDHSH 361
Query 366 GRRVSKPVPLTLSM-RPPKRPCNESPV 391
+ VP+T+ M RPP+R C+E+P+
Sbjct 362 -----RKVPVTIGMRRPPERACDENPL 383
>gi|258651022|ref|YP_003200178.1| radical SAM domain-containing protein [Nakamurella multipartita
DSM 44233]
gi|258554247|gb|ACV77189.1| Radical SAM domain protein [Nakamurella multipartita DSM 44233]
Length=405
Score = 572 bits (1475), Expect = 3e-161, Method: Compositional matrix adjust.
Identities = 280/394 (72%), Positives = 319/394 (81%), Gaps = 6/394 (1%)
Query 1 MTSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDE 60
MT+ V L+E F GL +PICLTWELTYACNLAC HCLSSSG+RDP ELST +CK +IDE
Sbjct 1 MTTAVLPLVEHFALGLQSPICLTWELTYACNLACAHCLSSSGRRDPRELSTAECKAVIDE 60
Query 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVD 120
LERMQVFYVNIGGGEPTVRPDFWELVDYATAH VGVKFSTNG++I + A RLAA+DYVD
Sbjct 61 LERMQVFYVNIGGGEPTVRPDFWELVDYATAHKVGVKFSTNGIKIDQQAAQRLAASDYVD 120
Query 121 VQISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATL 180
VQISLDGATAEVND +RG GSFD A+RA++NLAAAG G KISVV TR+N+ QLD F +
Sbjct 121 VQISLDGATAEVNDYVRGRGSFDTAIRAMENLAAAGMVGFKISVVCTRQNLDQLDAFKAI 180
Query 181 ASRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLG 240
A RY A LR+TRLRPSGRG DVW +LHPTA QQ +LY+WLV+ GE VLTGDSFFHLA G
Sbjct 181 ADRYRAQLRLTRLRPSGRGADVWDELHPTAAQQRELYNWLVANGENVLTGDSFFHLAAYG 240
Query 241 QSGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRE 300
+ AL GLN+CGAGRVVCLIDPVGDVYACPFAIH+ FLAGNV S GGF VW+ S LF E
Sbjct 241 E--ALPGLNLCGAGRVVCLIDPVGDVYACPFAIHESFLAGNVRSPGGFAGVWRESELFTE 298
Query 301 LREPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARER--HLPR 358
LR+PQS GAC SC +D+CRGGCMAAKFFTGLPLDGPDPECV+G E AL++ P+
Sbjct 299 LRKPQSGGACASCSAFDACRGGCMAAKFFTGLPLDGPDPECVKGFGEIALSKIEPGRSPK 358
Query 359 PRADHSRGRRV-SKPVPLTLSMRPPKRPCNESPV 391
P DHS + + + PV LTL R P R C+E+P+
Sbjct 359 PSEDHSHSKALRNGPVMLTLKTR-PSRSCDENPL 391
>gi|326329213|ref|ZP_08195540.1| MoaA/nifB/pqqE family protein [Nocardioidaceae bacterium Broad-1]
gi|325953008|gb|EGD45021.1| MoaA/nifB/pqqE family protein [Nocardioidaceae bacterium Broad-1]
Length=414
Score = 570 bits (1469), Expect = 2e-160, Method: Compositional matrix adjust.
Identities = 273/385 (71%), Positives = 312/385 (82%), Gaps = 7/385 (1%)
Query 8 LIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVF 67
L+EQFE GLDAPICLTWELTYACNL C HCLSSSG+RDP ELST QCK +IDEL+RMQ+F
Sbjct 24 LVEQFEFGLDAPICLTWELTYACNLECAHCLSSSGRRDPRELSTEQCKAVIDELQRMQIF 83
Query 68 YVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDG 127
YVNIGGGEPT+RPDFWELV+YA H VGVKFSTNG RITPE A LA+TDYVDVQISLDG
Sbjct 84 YVNIGGGEPTIRPDFWELVEYAVDHQVGVKFSTNGFRITPERAAFLASTDYVDVQISLDG 143
Query 128 ATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGAT 187
ATAEVND +RG GS+D A++AL NL AGF KISVV TR N+ QLD+F +A YGAT
Sbjct 144 ATAEVNDRVRGAGSYDTALKALANLRDAGFTDAKISVVCTRENIGQLDDFKAIADEYGAT 203
Query 188 LRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAG 247
LR+TRLRPSGRG DVW +LHP +QQ +LYDWL++ G+ VLTGDSFFHLA G+S L G
Sbjct 204 LRLTRLRPSGRGADVWDELHPLPEQQRELYDWLMAHGDNVLTGDSFFHLAAYGES--LPG 261
Query 248 LNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSA 307
LN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGN+L +GGFQ VW++S LF ELR PQ+
Sbjct 262 LNLCGAGRVVCLIDPVGDVYACPFAIHDQFLAGNLLGEGGFQEVWQSSELFTELRSPQTG 321
Query 308 GACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERHLPRPRADHSRGR 367
GAC C H+D+CRGGCMAAKFFTGLPLDGPDPECVQG+ E ALA +R +P DHSR
Sbjct 322 GACTKCQHFDACRGGCMAAKFFTGLPLDGPDPECVQGYGETALAGDRLVPPASKDHSRS- 380
Query 368 RVSKPVPLTLSM----RPPKRPCNE 388
+ S+ P+ L++ R P CNE
Sbjct 381 QASRNAPVLLNLGATRRRPVSACNE 405
>gi|336178558|ref|YP_004583933.1| Radical SAM domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859538|gb|AEH10012.1| Radical SAM domain protein [Frankia symbiont of Datisca glomerata]
Length=430
Score = 570 bits (1468), Expect = 2e-160, Method: Compositional matrix adjust.
Identities = 273/363 (76%), Positives = 308/363 (85%), Gaps = 4/363 (1%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
RL++ F+ GL APICLTWELTYACNLACVHCLSSSG+RDP ELST +C+ +IDELERMQV
Sbjct 9 RLVDHFQHGLAAPICLTWELTYACNLACVHCLSSSGRRDPRELSTAECRAVIDELERMQV 68
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FYVNIGGGEPTVRPDFWE+VDYA AHHVGVKFSTNGVRIT +VA RLA +DY+DVQISLD
Sbjct 69 FYVNIGGGEPTVRPDFWEIVDYAVAHHVGVKFSTNGVRITRDVAARLAGSDYIDVQISLD 128
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATAE+NDA+RGTGS AVRA+++LA AGF+G K+SVV+TR N QLD F LA RYGA
Sbjct 129 GATAEINDAVRGTGSHATAVRAMEHLADAGFSGFKLSVVVTRHNAGQLDAFKALADRYGA 188
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LR+TRLRPSGRG DVW +LHPTA QQ +LY+WLV+ GE+VLTGDSFFHL+ GQ AL
Sbjct 189 QLRLTRLRPSGRGADVWDELHPTAAQQRELYNWLVAHGEQVLTGDSFFHLSAYGQ--ALP 246
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGNV GGF+ VW++S LF ELR PQS
Sbjct 247 GLNLCGAGRVVCLIDPVGDVYACPFAIHDSFLAGNVREPGGFERVWRSSELFTELRAPQS 306
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPA-LAR-ERHLPRPRADHS 364
GAC SC H+DSCRGGCMAAKFFTGLPLDGPDPECVQG+ A LAR + +P+P DHS
Sbjct 307 GGACASCAHFDSCRGGCMAAKFFTGLPLDGPDPECVQGYGVDAMLARGDAGVPKPSGDHS 366
Query 365 RGR 367
R
Sbjct 367 HAR 369
>gi|269126595|ref|YP_003299965.1| Radical SAM domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268311553|gb|ACY97927.1| Radical SAM domain protein [Thermomonospora curvata DSM 43183]
Length=409
Score = 569 bits (1466), Expect = 3e-160, Method: Compositional matrix adjust.
Identities = 279/393 (71%), Positives = 315/393 (81%), Gaps = 14/393 (3%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
RL++ F+ GLDAPICLTWELTYACNLAC HCLSSSG+RDP ELST +CK +IDELE +QV
Sbjct 17 RLVDLFQYGLDAPICLTWELTYACNLACAHCLSSSGRRDPRELSTAECKAVIDELEALQV 76
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FYVNIGGGEPTVR DFWELVDYATAHHVGVKFSTNGVRITP+VA RLAA DYVDVQISLD
Sbjct 77 FYVNIGGGEPTVRSDFWELVDYATAHHVGVKFSTNGVRITPQVARRLAANDYVDVQISLD 136
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATAEVNDA+RG GS++MA+RA++NLA AG K+SVV TR N+ Q+D F +A YGA
Sbjct 137 GATAEVNDALRGPGSYEMAMRAMRNLADAGMRNFKLSVVCTRHNIPQIDAFKQIADTYGA 196
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LR+TRLRPSGRG DVW +LHPT DQQ QLY+WL++ GE VLTGDSFFHL+ GQ AL
Sbjct 197 QLRLTRLRPSGRGADVWDELHPTPDQQRQLYEWLLAHGEEVLTGDSFFHLSAYGQ--ALP 254
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIH+ FLAGNV GGF VW+ S LF LR+PQ
Sbjct 255 GLNLCGAGRVVCLIDPVGDVYACPFAIHEEFLAGNVRQPGGFAKVWRESPLFARLRKPQH 314
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALAR----ERHLPRPRAD 362
GAC SC YD+C+GGCMAAKFFTGLPLDGPDPECV GH E LAR +PRP D
Sbjct 315 GGACASCSCYDACKGGCMAAKFFTGLPLDGPDPECVHGHGEKLLARRPGDRSGIPRPSVD 374
Query 363 HSRGRRVSKPVPLTLSMRPPKRP----CNESPV 391
HSR PVP+ L+ R P RP C+E+P+
Sbjct 375 HSR----RGPVPVKLTRRRPDRPPVSACDENPL 403
>gi|333921980|ref|YP_004495561.1| hypothetical protein AS9A_4328 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484201|gb|AEF42761.1| hypothetical protein AS9A_4328 [Amycolicicoccus subflavus DQS3-9A1]
Length=394
Score = 567 bits (1461), Expect = 1e-159, Method: Compositional matrix adjust.
Identities = 273/390 (70%), Positives = 317/390 (82%), Gaps = 6/390 (1%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
RL+E F+ GLDAPICLTWELTYACNL+C HCLS+SGKRDP EL+T +CK +IDELERMQV
Sbjct 2 RLVEHFKEGLDAPICLTWELTYACNLSCTHCLSASGKRDPRELTTAECKAVIDELERMQV 61
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FYVNIGGGEPTVRPDFWEL+DYA H+VGVKFSTNGVRITP+ A +LAATDYVD+QIS+D
Sbjct 62 FYVNIGGGEPTVRPDFWELLDYAIDHNVGVKFSTNGVRITPDRARQLAATDYVDIQISID 121
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATAEVNDA+RG GSF A+RA++NLA AGF G KISVV+TR NV+QLDEF +A ++ A
Sbjct 122 GATAEVNDAVRGPGSFATAMRAMENLADAGFTGFKISVVMTRHNVSQLDEFKAIADKFDA 181
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LRITRLRPSGRG DVW DLHPTA+QQ+++Y+WL+ GE VLTGDSFFHL LG S L
Sbjct 182 QLRITRLRPSGRGADVWDDLHPTAEQQLRIYEWLLDHGEDVLTGDSFFHLNALGSS-PLP 240
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIH FLAGNV GGF +VW+ S LF +LR+PQ+
Sbjct 241 GLNLCGAGRVVCLIDPVGDVYACPFAIHSEFLAGNVREKGGFASVWRTSELFEQLRQPQT 300
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALAR--ERHLPRPRADHS 364
G C SC +D+C+GGCMAAKFFTGLPLDGPDPECV+G+ E ALA +PRP DH+
Sbjct 301 GGVCKSCPAFDACQGGCMAAKFFTGLPLDGPDPECVRGNGERALAAVGSSSIPRPEKDHT 360
Query 365 ---RGRRVSKPVPLTLSMRPPKRPCNESPV 391
+ + V +PL P RPCN SPV
Sbjct 361 HTAKRKGVQLGMPLAPRNSVPDRPCNASPV 390
>gi|324999640|ref|ZP_08120752.1| radical SAM domain-containing protein [Pseudonocardia sp. P1]
Length=413
Score = 563 bits (1452), Expect = 1e-158, Method: Compositional matrix adjust.
Identities = 272/396 (69%), Positives = 321/396 (82%), Gaps = 14/396 (3%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
+L++ F+ GL++PICLTWELTYACNLACVHCLSSSG+RDP EL+T + K +IDEL+RMQV
Sbjct 2 KLVDHFQYGLNSPICLTWELTYACNLACVHCLSSSGRRDPRELTTAEAKAVIDELQRMQV 61
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FY+NIGGGEPTVRPDFWEL+DYA AH VGVKFSTNGV++ A +LAATDYVD+QIS+D
Sbjct 62 FYINIGGGEPTVRPDFWELLDYAIAHDVGVKFSTNGVKLDKARAAQLAATDYVDIQISMD 121
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATAEVND +RG GSFD A+ AL+NLA AGF KISVV+TR NV QLD+F +A +YGA
Sbjct 122 GATAEVNDYVRGPGSFDTAITALENLAEAGFQAPKISVVMTRENVDQLDDFKAIADKYGA 181
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LRITRLRPSGRG DVW +LHPT QQ QLYDWLV+ G++VLTGDSFFHL+ G AL
Sbjct 182 QLRITRLRPSGRGADVWDELHPTQAQQKQLYDWLVAHGDQVLTGDSFFHLSAYGD--ALP 239
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIH++FLAGNV +GGF+ VW++S LF ELR+PQ+
Sbjct 240 GLNLCGAGRVVCLIDPVGDVYACPFAIHENFLAGNVRDEGGFKEVWEHSDLFTELRQPQT 299
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALA---RERHLPRPRADH 363
GAC SC HYDSC+GGCMAAKFFTGLPLDGPDPECVQG+ E LA E +P+ DH
Sbjct 300 GGACASCQHYDSCQGGCMAAKFFTGLPLDGPDPECVQGYGEQMLAARNSETVIPKSDVDH 359
Query 364 SR-----GRRVSKPVPLTLSMRPPKRP---CNESPV 391
SR R +P L+L+ PP+RP C+ESP+
Sbjct 360 SRSAPRNSREPKQPTMLSLA-PPPRRPDRACDESPL 394
>gi|54024202|ref|YP_118444.1| hypothetical protein nfa22330 [Nocardia farcinica IFM 10152]
gi|54015710|dbj|BAD57080.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=393
Score = 562 bits (1448), Expect = 4e-158, Method: Compositional matrix adjust.
Identities = 276/390 (71%), Positives = 315/390 (81%), Gaps = 7/390 (1%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
RL+E F+ GL APICLTWELTYACNLAC HCLSSSG+RDP ELST +CK +IDEL+RMQV
Sbjct 2 RLVEHFKHGLAAPICLTWELTYACNLACEHCLSSSGRRDPRELSTEECKAVIDELQRMQV 61
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FYVNIGGGEPTVRPDFWEL+DY+ H VGVKFSTNGVR+TP+ A LAATDYVDVQIS+D
Sbjct 62 FYVNIGGGEPTVRPDFWELLDYSLDHQVGVKFSTNGVRLTPQRARMLAATDYVDVQISID 121
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATAEVNDA+RG GSF MA RA+ NLA AGF KISVV+TR NV QLDEF +A R+GA
Sbjct 122 GATAEVNDAVRGPGSFAMAYRAMGNLADAGFENFKISVVMTRHNVGQLDEFKAIADRFGA 181
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LRITRLRPSGRG DVW +LHPTA+QQ+++YDWL+ GE VLTGDSFFHL LG S L
Sbjct 182 QLRITRLRPSGRGADVWDELHPTAEQQLRIYDWLIDNGENVLTGDSFFHLNALG-STPLP 240
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGNV GGF++VW S LF LR+PQ+
Sbjct 241 GLNLCGAGRVVCLIDPVGDVYACPFAIHDEFLAGNVRDPGGFESVWNTSELFERLRQPQT 300
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALAR--ERHLPRPRADHS 364
GAC +C YDSC+GGCMAAKFFTGLPLDGPDPECV+G++E ALA P+P DHS
Sbjct 301 GGACTACPAYDSCQGGCMAAKFFTGLPLDGPDPECVRGNAEFALATVGADSAPKPDKDHS 360
Query 365 RGRRVSKPVPLTL---SMRPPKRPCNESPV 391
R R ++P + L +R P R C+ SP+
Sbjct 361 R-RAPARPRAVALGLPGLRVPDRACDTSPI 389
>gi|331699422|ref|YP_004335661.1| Radical SAM domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326954111|gb|AEA27808.1| Radical SAM domain protein [Pseudonocardia dioxanivorans CB1190]
Length=410
Score = 560 bits (1442), Expect = 2e-157, Method: Compositional matrix adjust.
Identities = 270/393 (69%), Positives = 319/393 (82%), Gaps = 11/393 (2%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
+L++ F+ GL +PICLTWELTYACNLACVHCLSSSG+RDP ELST + K +IDEL+RMQV
Sbjct 2 KLVDHFQYGLSSPICLTWELTYACNLACVHCLSSSGRRDPRELSTDEAKAVIDELQRMQV 61
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FY+NIGGGEPTVRPDFWEL+DY+ +H VGVKFSTNG+++ + A +LAATDYVD+QISLD
Sbjct 62 FYINIGGGEPTVRPDFWELLDYSISHDVGVKFSTNGIKLDRKRAAQLAATDYVDIQISLD 121
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATA+VND +RG GS+ A+RAL+NLA AGFA KISVV+TR+NV QLDEF +A ++GA
Sbjct 122 GATADVNDHVRGPGSYATAMRALENLAEAGFAQPKISVVMTRQNVDQLDEFKAIADKFGA 181
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LRITRLRPSGRG DVW +LHP QQ Q+YDWLV +G++VLTGDSFFHL+ G+ AL
Sbjct 182 QLRITRLRPSGRGADVWDELHPLPSQQRQMYDWLVERGDQVLTGDSFFHLSAYGE--ALP 239
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIH++FLAGNV S+GGFQ VW++S LF ELR PQ+
Sbjct 240 GLNLCGAGRVVCLIDPVGDVYACPFAIHENFLAGNVRSEGGFQKVWQDSELFTELRRPQT 299
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALARERH---LPRPRADH 363
GAC SC HYDSC+GGCMAAKFFTGLPLDGPDPECV+G E ALA +P+ DH
Sbjct 300 GGACASCMHYDSCQGGCMAAKFFTGLPLDGPDPECVRGFGEQALAARDGATLIPKSDVDH 359
Query 364 SR-----GRRVSKPVPLTLSMRPPKRPCNESPV 391
SR R PVPLTL+ R P R C SP+
Sbjct 360 SRSAPRNSRTPKGPVPLTLTTR-PDRACETSPL 391
>gi|54025413|ref|YP_119655.1| hypothetical protein nfa34430 [Nocardia farcinica IFM 10152]
gi|54016921|dbj|BAD58291.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=397
Score = 560 bits (1442), Expect = 2e-157, Method: Compositional matrix adjust.
Identities = 275/392 (71%), Positives = 315/392 (81%), Gaps = 8/392 (2%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
+L+E F+ GLDAPICLTWELTYACNLAC HCLSSSG+RDP EL+T + K +IDEL+RMQV
Sbjct 2 KLVEHFKYGLDAPICLTWELTYACNLACSHCLSSSGRRDPRELTTEEAKAVIDELQRMQV 61
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FYVNIGGGEPTVR DFWEL+DYA H VGVKFSTNGVR+TP A +LAATDYVDVQIS+D
Sbjct 62 FYVNIGGGEPTVRSDFWELLDYAVDHQVGVKFSTNGVRLTPARAEQLAATDYVDVQISID 121
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATAEVNDA+RG GSFD A+RA++NLA AGF KISVV+TR NV QLDEF +A R+GA
Sbjct 122 GATAEVNDAVRGPGSFDTAMRAMENLANAGFENFKISVVMTRHNVGQLDEFKAIADRFGA 181
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LRITRLRPSGRG DVW +LHPT +QQ++LY WLV+ GE VLTGDSFFHL LG S L
Sbjct 182 QLRITRLRPSGRGADVWDELHPTTEQQLELYHWLVAHGEGVLTGDSFFHLNALG-STPLP 240
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIHD FLAGNV GGF++VW+ S LF +LR+PQ+
Sbjct 241 GLNLCGAGRVVCLIDPVGDVYACPFAIHDEFLAGNVRDPGGFESVWRTSKLFAQLRQPQT 300
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALAR-ERHLPRPRADHSR 365
G+C SC +D+C+GGCMAAKFFTGLPLDGPDPECV G++EPALA P P DHSR
Sbjct 301 GGSCTSCSAFDACQGGCMAAKFFTGLPLDGPDPECVYGNAEPALAGVGASRPTPDKDHSR 360
Query 366 GRRVSKPVPLTL-SMRP-----PKRPCNESPV 391
R K V L L S+ P P R C+ P+
Sbjct 361 TGRARKSVTLGLPSLGPVRTSVPDRACDTDPL 392
>gi|134098953|ref|YP_001104614.1| coenzyme PQQ synthesis protein E [Saccharopolyspora erythraea
NRRL 2338]
gi|291006809|ref|ZP_06564782.1| coenzyme PQQ synthesis protein E [Saccharopolyspora erythraea
NRRL 2338]
gi|133911576|emb|CAM01689.1| coenzyme PQQ synthesis protein E [Saccharopolyspora erythraea
NRRL 2338]
Length=392
Score = 553 bits (1426), Expect = 2e-155, Method: Compositional matrix adjust.
Identities = 269/394 (69%), Positives = 316/394 (81%), Gaps = 10/394 (2%)
Query 2 TSPVPRLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDEL 61
T+ VP L+EQF+ GLD+PICLTWE TYACNL+C HCLSSSG+RDP EL T + K +IDEL
Sbjct 3 TADVPPLVEQFKHGLDSPICLTWEWTYACNLSCAHCLSSSGRRDPDELGTDEIKRVIDEL 62
Query 62 ERMQVFYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDV 121
ERMQVFYVN+GGGEPTVR DFWELVDYA HHVG+KFSTNG RITPE A +LAATDYVDV
Sbjct 63 ERMQVFYVNVGGGEPTVRSDFWELVDYAVDHHVGIKFSTNGYRITPERARKLAATDYVDV 122
Query 122 QISLDGATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLA 181
QISLDGATAEVNDA+RG GS+D A+RAL+NL++AG KISVV+TR+NV+QLD+F +A
Sbjct 123 QISLDGATAEVNDAVRGPGSYDTAMRALENLSSAGMRDFKISVVMTRQNVSQLDDFRAIA 182
Query 182 SRYGATLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQ 241
R+GA LRITRLRPSGRG DVW +LHPT +QQ ++Y WLV+ G++VLTGDSFFHL LG
Sbjct 183 DRFGAQLRITRLRPSGRGADVWDELHPTDEQQREIYAWLVAHGDQVLTGDSFFHLNALG- 241
Query 242 SGALAGLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFREL 301
S L GLN+CGAGRVVCLIDPVGDVYACPFAIHD F AGNV GGF VW+ S LF EL
Sbjct 242 STPLPGLNLCGAGRVVCLIDPVGDVYACPFAIHDAFKAGNVRETGGFARVWQESELFTEL 301
Query 302 REPQSAGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALA--RERHLPRP 359
R+PQ+ GAC SC +D+C+GGCMAAKFFTGLPLDGPDPECV+G+ + AL+ LP+
Sbjct 302 RQPQTGGACRSCSAFDACQGGCMAAKFFTGLPLDGPDPECVKGYGQTALSVVDRSGLPKA 361
Query 360 RADHSRG--RRVSKPVPLTLSMRPPKRPCNESPV 391
DHSR R+V +P P +PC+ SP+
Sbjct 362 AQDHSRTSRRKVGLGIPAV-----PAKPCDSSPL 390
>gi|158315012|ref|YP_001507520.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
gi|158110417|gb|ABW12614.1| Radical SAM domain protein [Frankia sp. EAN1pec]
Length=412
Score = 550 bits (1417), Expect = 1e-154, Method: Compositional matrix adjust.
Identities = 277/396 (70%), Positives = 308/396 (78%), Gaps = 14/396 (3%)
Query 8 LIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVF 67
L+++FERGL APIC+TWELTYACNL+CVHCLS+SG+RDP EL T QC+ +IDEL M+VF
Sbjct 12 LVQRFERGLTAPICMTWELTYACNLSCVHCLSASGRRDPRELGTAQCEAVIDELRAMRVF 71
Query 68 YVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDG 127
YVNIGGGEPTVRPDFW L+DYA H VGVKFSTNGVRI A RLAATDYVDVQ+SLDG
Sbjct 72 YVNIGGGEPTVRPDFWHLLDYAVDHQVGVKFSTNGVRIDLPRARRLAATDYVDVQVSLDG 131
Query 128 ATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGAT 187
ATAEVND +RG GSFD+AVRAL NLA AGF K+SVV+TR NV QLDEF LA GAT
Sbjct 132 ATAEVNDRVRGRGSFDLAVRALDNLATAGFRDAKVSVVVTRDNVGQLDEFKRLADDRGAT 191
Query 188 LRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAG 247
LR+TRLRPSGRG DVW DLHPTA QQ +LYDWLV GE VLTGDSFFHLA G++ L G
Sbjct 192 LRLTRLRPSGRGADVWDDLHPTAHQQRELYDWLVRAGENVLTGDSFFHLAGFGET--LPG 249
Query 248 LNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSA 307
LNMCGAGRVVCLIDPVGDVYACPF IH+ F AGN+L+DGGF VW S LF+ LREPQS
Sbjct 250 LNMCGAGRVVCLIDPVGDVYACPFTIHETFRAGNILTDGGFAQVWSTSELFQRLREPQSG 309
Query 308 GACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALAR-ERHLPRPRADHSR- 365
GAC SCG YDSCRGGCMAAKFFTGLPLDGPDPECVQGH + ALA +R +P DHS
Sbjct 310 GACSSCGFYDSCRGGCMAAKFFTGLPLDGPDPECVQGHGQDALADPQRIVPALSLDHSHR 369
Query 366 -----GRRVSKPVPLTLSMRPPK-----RPCNESPV 391
G +PV + + RP C ESP+
Sbjct 370 TGCGTGESPREPVLVQIGHRPAPAAPPVSACAESPL 405
>gi|284993283|ref|YP_003411838.1| radical SAM domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284066529|gb|ADB77467.1| Radical SAM domain protein [Geodermatophilus obscurus DSM 43160]
Length=410
Score = 550 bits (1416), Expect = 2e-154, Method: Compositional matrix adjust.
Identities = 271/389 (70%), Positives = 308/389 (80%), Gaps = 7/389 (1%)
Query 7 RLIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQV 66
RLI+QFE GLDAPICLTWELTYACNLAC HCLSSSG+RDP ELST + + +IDEL+RMQV
Sbjct 19 RLIDQFEYGLDAPICLTWELTYACNLACAHCLSSSGRRDPRELSTAEAEAVIDELQRMQV 78
Query 67 FYVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLD 126
FYVN+GGGEPTVRPDFW L+DYA H VGVKFSTNGV++ A +LA TDYVDVQISLD
Sbjct 79 FYVNVGGGEPTVRPDFWHLLDYAIGHDVGVKFSTNGVKLDKARAQQLARTDYVDVQISLD 138
Query 127 GATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGA 186
GATAEVND +RGTGS+ +AVRAL+NLA AG K+SVV+TR N QLDEF L RYGA
Sbjct 139 GATAEVNDRVRGTGSYAIAVRALENLAEAGMKDFKVSVVVTRENAGQLDEFKALTDRYGA 198
Query 187 TLRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALA 246
LRITRLRPSGRG DVW LHPT QQ +LY WL++ VLTGDSFFHL+ G+ AL
Sbjct 199 QLRITRLRPSGRGADVWDQLHPTQAQQRELYSWLLANEAEVLTGDSFFHLSAFGE--ALP 256
Query 247 GLNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQS 306
GLN+CGAGRVVCLIDPVGDVYACPFAIH+ FLAGNV +GGFQ VW++S LF +LR PQ+
Sbjct 257 GLNLCGAGRVVCLIDPVGDVYACPFAIHEQFLAGNVRDEGGFQRVWQHSELFADLRSPQT 316
Query 307 AGACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPAL-ARERHLPRPRA--DH 363
GAC C H+D+CRGGCMAAKFFTGLPLDGPDPECVQG+ E AL AR+ L PR+ DH
Sbjct 317 GGACTKCAHFDACRGGCMAAKFFTGLPLDGPDPECVQGYGETALAARDLELATPRSSVDH 376
Query 364 SRGRRVSKPVPLTLSM-RPPKRPCNESPV 391
S V + P L M P +PCNESP+
Sbjct 377 SHTGPV-RGQPTLLGMPSIPAKPCNESPL 404
>gi|288919784|ref|ZP_06414109.1| Radical SAM domain protein [Frankia sp. EUN1f]
gi|288348792|gb|EFC83044.1| Radical SAM domain protein [Frankia sp. EUN1f]
Length=427
Score = 537 bits (1384), Expect = 1e-150, Method: Compositional matrix adjust.
Identities = 264/379 (70%), Positives = 299/379 (79%), Gaps = 10/379 (2%)
Query 8 LIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVF 67
L+ +FERGL APICLTWELTYACNL+CVHCLS+SG+RDP ELST QC+ IIDEL+ MQVF
Sbjct 21 LVARFERGLAAPICLTWELTYACNLSCVHCLSASGRRDPRELSTEQCESIIDELQAMQVF 80
Query 68 YVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDG 127
YVN+GGGEPTVRPDFW L++YA H VGVKFSTNGVRI A LA+TDYVDVQ+SLDG
Sbjct 81 YVNVGGGEPTVRPDFWHLLEYAVNHQVGVKFSTNGVRIDAARARYLASTDYVDVQVSLDG 140
Query 128 ATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGAT 187
ATA VND +RG GS+ MA+RAL NL AGF KISVV+TR NV QLDEF +A +GAT
Sbjct 141 ATAAVNDQVRGEGSYAMALRALDNLTTAGFRDAKISVVVTRHNVDQLDEFKRIADDHGAT 200
Query 188 LRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAG 247
LR+TRLRPSGRG DVW +LHPT DQQ LY+WLV GE+VLTGDSFFHLA G+ L G
Sbjct 201 LRLTRLRPSGRGADVWDELHPTHDQQRDLYEWLVRAGEKVLTGDSFFHLAGFGEK--LPG 258
Query 248 LNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSA 307
LN+CGAGRVVCLIDPVGDVYACPF IH+ F AGN+++DGGF VW+ S LF LREPQ
Sbjct 259 LNLCGAGRVVCLIDPVGDVYACPFTIHETFRAGNIVTDGGFAQVWRTSELFGRLREPQGG 318
Query 308 GACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPALAR-ERHLPRPRADHSR- 365
GAC +C HYD CRGGCMAAKFFTGLPLDGPDPECVQG+ + ALA +R +P DHS
Sbjct 319 GACSACQHYDVCRGGCMAAKFFTGLPLDGPDPECVQGYGQAALADPQRTVPALSLDHSHR 378
Query 366 ----GRRVSKPVPLTLSMR 380
GRR +PV L L R
Sbjct 379 REPAGRR--EPVLLQLGTR 395
>gi|312194879|ref|YP_004014940.1| radical SAM domain protein [Frankia sp. EuI1c]
gi|311226215|gb|ADP79070.1| Radical SAM domain protein [Frankia sp. EuI1c]
Length=386
Score = 502 bits (1292), Expect = 5e-140, Method: Compositional matrix adjust.
Identities = 249/368 (68%), Positives = 289/368 (79%), Gaps = 5/368 (1%)
Query 8 LIEQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVF 67
L + RGL+APICLTWE TYACNL CVHCLSSSG+RDP EL T Q + ++D+L +QVF
Sbjct 21 LQQTLLRGLEAPICLTWEWTYACNLQCVHCLSSSGRRDPRELDTAQMRSVVDQLADLQVF 80
Query 68 YVNIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDG 127
YVN+GGGEP RPDF+E+++Y+ H VGVKFSTNG I A RLA DYVD+QISLDG
Sbjct 81 YVNVGGGEPMTRPDFFEVLEYSVDHGVGVKFSTNGGMIDASNARRLADLDYVDIQISLDG 140
Query 128 ATAEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGAT 187
A A ND +RG GS+D A R++++LA AGF K+SVV+TR NV QLD FA LA+ YGA
Sbjct 141 ADAMTNDPVRGLGSYDRARRSMEHLATAGFGAFKLSVVVTRHNVDQLDSFAALAADYGAE 200
Query 188 LRITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAG 247
LRITRLRPSGRG D WA LHPTADQQ +L+ WL+++ E VLTGDSFFHLA GQ AL G
Sbjct 201 LRITRLRPSGRGQDSWARLHPTADQQRELHGWLLARPE-VLTGDSFFHLAAYGQ--ALPG 257
Query 248 LNMCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSA 307
LN+CGAGRVVCLIDPVGDVYACPFA+HDHF AG+VL DGGF NVW+ S+LF ELREP +
Sbjct 258 LNLCGAGRVVCLIDPVGDVYACPFALHDHFRAGSVLDDGGFANVWRTSALFTELREPDNP 317
Query 308 GACGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECVQGHSEPAL-ARERH-LPRPRADHSR 365
GAC SCGHYD+C+GGCMAAKFFTGLPLDGPDPECV GH E AL A + H LP DHS+
Sbjct 318 GACTSCGHYDACQGGCMAAKFFTGLPLDGPDPECVLGHGEAALTAVDPHSLPIIDNDHSK 377
Query 366 GRRVSKPV 373
RR+ V
Sbjct 378 RRRLPLSV 385
>gi|269928766|ref|YP_003321087.1| Radical SAM domain-containing protein [Sphaerobacter thermophilus
DSM 20745]
gi|269788123|gb|ACZ40265.1| Radical SAM domain protein [Sphaerobacter thermophilus DSM 20745]
Length=364
Score = 405 bits (1040), Expect = 8e-111, Method: Compositional matrix adjust.
Identities = 202/333 (61%), Positives = 238/333 (72%), Gaps = 5/333 (1%)
Query 10 EQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVFYV 69
E RGL APICLTWE+TYACNL CVHCLSSSG+R P EL+T + K +IDE M+VFY+
Sbjct 4 ELLRRGLSAPICLTWEITYACNLQCVHCLSSSGRRAPDELTTEEAKRLIDEWAEMKVFYI 63
Query 70 NIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDGAT 129
N+GGGEP RPDF+EL++YA + +GVKFSTNG I A +A TDY+DVQISLDG T
Sbjct 64 NVGGGEPMTRPDFFELMEYAISRRIGVKFSTNGTLIDDAAADWIARTDYLDVQISLDGVT 123
Query 130 AEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGATLR 189
AE+ND IRG GS+ A RA+ LAA GF KI+ V+TRR+ A LD LA YGA LR
Sbjct 124 AEINDPIRGEGSYARARRAMDLLAARGFP-FKINTVVTRRSFADLDAMYDLAQHYGAQLR 182
Query 190 ITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAGLN 249
+TRLRPSGRG +VW L T DQ LYDWL + + VLTGDSFFHL+ LGQ L GLN
Sbjct 183 VTRLRPSGRGREVWHALRLTRDQSRALYDWLKAHPD-VLTGDSFFHLSALGQP--LDGLN 239
Query 250 MCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSAGA 309
MCGAGR+VC +DP GDVYACPFA+ + F AGNV + F +W+ + LF LRE + G
Sbjct 240 MCGAGRIVCCVDPRGDVYACPFALSEEFKAGNV-RERSFAEIWREAPLFAHLREWEVGGT 298
Query 310 CGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECV 342
C CG Y C GGCMA K+FTG PLD PDPECV
Sbjct 299 CQQCGAYGRCHGGCMAVKYFTGTPLDDPDPECV 331
>gi|221636246|ref|YP_002524122.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
gi|221157912|gb|ACM07030.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
Length=365
Score = 402 bits (1033), Expect = 5e-110, Method: Compositional matrix adjust.
Identities = 206/354 (59%), Positives = 249/354 (71%), Gaps = 10/354 (2%)
Query 10 EQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVFYV 69
E RGL APICLTWE+TYACN CVHCLSSSGKR EL+T + K +IDE ++VFY+
Sbjct 4 EVLRRGLAAPICLTWEITYACNFNCVHCLSSSGKRASDELTTEEAKRLIDEWAALRVFYI 63
Query 70 NIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDGAT 129
N+GGGEP +RPDF EL++YA A +GVKFSTNG I VA +A T Y+DVQISLDG T
Sbjct 64 NVGGGEPLLRPDFVELMEYAIARGIGVKFSTNGSLIDEAVADWIARTPYLDVQISLDGVT 123
Query 130 AEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGATLR 189
AEVNDAIRG GS+ +A RA+ LAA GF+ KI+ V+TRRN QLD+F LA+ YGA LR
Sbjct 124 AEVNDAIRGAGSYALARRAMDFLAARGFS-FKINAVLTRRNFEQLDDFYALATSYGAQLR 182
Query 190 ITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAGLN 249
+TRLRPSGRG VW +L T Q QLY+WL+ + VLTGDSFFHL+ LGQ L GLN
Sbjct 183 VTRLRPSGRGRAVWNELRLTRAQSHQLYEWLLQHPD-VLTGDSFFHLSALGQP--LDGLN 239
Query 250 MCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSAGA 309
MCGAGR+VC +DP GDVYACPF + + F AGNV + F +W++S LFR LRE ++
Sbjct 240 MCGAGRIVCCVDPRGDVYACPFVLTEEFKAGNV-RERSFTEIWRHSPLFRRLREWEAGST 298
Query 310 CGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECV----QGHSEPALARERHLPRP 359
C C Y C+ GC A K+FTG PL+ PDPECV G ++ L H PRP
Sbjct 299 CQQCSAYARCQSGCFAVKYFTGTPLEAPDPECVFAPETGPTDVVLPLRVH-PRP 351
>gi|108805936|ref|YP_645873.1| radical SAM family protein [Rubrobacter xylanophilus DSM 9941]
gi|108767179|gb|ABG06061.1| Radical SAM [Rubrobacter xylanophilus DSM 9941]
Length=367
Score = 393 bits (1010), Expect = 3e-107, Method: Compositional matrix adjust.
Identities = 195/333 (59%), Positives = 232/333 (70%), Gaps = 4/333 (1%)
Query 10 EQFERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVFYV 69
E RGL+APICLTWELTY CNL C HCLS+SG R EL+T + K +IDE MQVFY+
Sbjct 4 ELLRRGLEAPICLTWELTYGCNLRCAHCLSASGVRRENELTTGEAKRLIDEWAEMQVFYI 63
Query 70 NIGGGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDGAT 129
N+GGGEP RPDF+EL+DY +GVKFSTNG + E A +++ DY+DVQ+SLDGAT
Sbjct 64 NVGGGEPLTRPDFFELMDYCLERGIGVKFSTNGTLVDDEAADWISSRDYLDVQVSLDGAT 123
Query 130 AEVNDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGATLR 189
E ND +RG GSF A RA++ LA KI+ V+TR N QLDE LA YGA LR
Sbjct 124 PETNDPVRGNGSFRRARRAMERLAGRSVP-FKINTVLTRHNFGQLDELYALAKGYGAQLR 182
Query 190 ITRLRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAGLN 249
+TRLRPSGRG +VW L PT +Q +LY WL + + VLTGDSFFHL+ G+ L G+N
Sbjct 183 LTRLRPSGRGANVWEALRPTREQNRRLYGWLHAHPD-VLTGDSFFHLSAYGRP--LQGMN 239
Query 250 MCGAGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSAGA 309
MCGAGR+VC +DPVG+VYACPF + FLAGNV GGF VW++S LF LRE Q G
Sbjct 240 MCGAGRIVCCVDPVGEVYACPFVLAPEFLAGNVRDPGGFAGVWRDSPLFARLREWQVGGE 299
Query 310 CGSCGHYDSCRGGCMAAKFFTGLPLDGPDPECV 342
C SC Y C GGCMA K FTG PLD PDP+CV
Sbjct 300 CRSCNAYRLCHGGCMAVKHFTGRPLDSPDPDCV 332
>gi|148265581|ref|YP_001232287.1| radical SAM domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146399081|gb|ABQ27714.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
Length=347
Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 138/331 (42%), Positives = 196/331 (60%), Gaps = 6/331 (1%)
Query 13 ERGLDAPICLTWELTYACNLACVHCLSSSGKRDPGELSTRQCKDIIDELERMQVFYVNIG 72
E GL +P+ LTWE++ ACNL C HCLSSSG+ GELST + D+++++ + VF +N G
Sbjct 7 ELGLRSPVNLTWEVSLACNLRCTHCLSSSGEPAAGELSTAEALDLVEQVHQAGVFQINFG 66
Query 73 GGEPTVRPDFWELVDYATAHHVGVKFSTNGVRITPEVATRLAATDYVDVQISLDGATAEV 132
GGEP +RPDF E++ + STNG + E RLA T V +Q+S+DGATAE
Sbjct 67 GGEPFLRPDFEEILVACHGRGIMTCISTNGTLLNAERVARLATTRLVAIQVSMDGATAET 126
Query 133 NDAIRGTGSFDMAVRALQNLAAAGFAGVKISVVITRRNVAQLDEFATLASRYGATLRITR 192
DAIRG G + A+ A++ LAA I+ V+T +N +Q+ +A G +LR++R
Sbjct 127 CDAIRGKGVYHKAIEAIKLLAATSIP-TSINTVLTTQNASQIPAMYEMAHSLGVSLRVSR 185
Query 193 LRPSGRGTDVWADLHPTADQQVQLYDWLVSKGERVLTGDSFFHLAPLGQSGALAGLNMCG 252
RPSGRG D W +L PT Q + DWL G+ V TGDSFF L + G GLN+CG
Sbjct 186 FRPSGRGADNWEELRPTPAQLLAFSDWLAKSGD-VRTGDSFFSLTSQERQG--LGLNLCG 242
Query 253 AGRVVCLIDPVGDVYACPFAIHDHFLAGNVLSDGGFQNVWKNSSLFRELREPQSAGACGS 312
A ++ C + P G++Y C F D F AG+ L + FQ +W +S ++ R + +C
Sbjct 243 AAKLTCCVGPTGNMYPCAFLQTDRFKAGS-LREQSFQEIWDSSEIYDSFRSLR-IHSCEE 300
Query 313 CGHYDSCRGGCMAAKFFTGLPLDGPDPECVQ 343
C +D C GGC A + ++G DPEC++
Sbjct 301 CNRFDQCHGGCPAVAWHLKNDINGGDPECLE 331
Lambda K H
0.321 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 768123887500
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40