BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0698

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607838|ref|NP_215212.1|  hypothetical protein Rv0698 [Mycoba...   408    2e-112
gi|298524190|ref|ZP_07011599.1|  conserved hypothetical protein [...   406    9e-112
gi|31791882|ref|NP_854375.1|  hypothetical protein Mb0717 [Mycoba...   177    6e-43 
gi|289446257|ref|ZP_06436001.1|  conserved hypothetical protein [...   162    2e-38 
gi|31791883|ref|NP_854376.1|  hypothetical protein Mb0718 [Mycoba...   153    2e-35 
gi|15610775|ref|NP_218156.1|  hypothetical protein Rv3639c [Mycob...  64.3    1e-08 
gi|31794809|ref|NP_857302.1|  hypothetical protein Mb3663c [Mycob...  63.9    1e-08 
gi|340628603|ref|YP_004747055.1|  hypothetical protein MCAN_36501...  62.8    3e-08 
gi|289568046|ref|ZP_06448273.1|  conserved hypothetical protein [...  57.8    1e-06 
gi|115938031|ref|XP_794804.2|  PREDICTED: similar to microtubule ...  34.7    7.5   


>gi|15607838|ref|NP_215212.1| hypothetical protein Rv0698 [Mycobacterium tuberculosis H37Rv]
 gi|148660473|ref|YP_001281996.1| hypothetical protein MRA_0706 [Mycobacterium tuberculosis H37Ra]
 gi|148821903|ref|YP_001286657.1| hypothetical protein TBFG_10712 [Mycobacterium tuberculosis F11]
 21 more sequence titles
 Length=203

 Score =  408 bits (1049),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 202/203 (99%), Positives = 203/203 (100%), Gaps = 0/203 (0%)

Query  1    LGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT  60
            +GRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT
Sbjct  1    MGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT  60

Query  61   SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS  120
            SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS
Sbjct  61   SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS  120

Query  121  EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ  180
            EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ
Sbjct  121  EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ  180

Query  181  YGADGWPVRLGCGVGGAARGDQR  203
            YGADGWPVRLGCGVGGAARGDQR
Sbjct  181  YGADGWPVRLGCGVGGAARGDQR  203


>gi|298524190|ref|ZP_07011599.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298493984|gb|EFI29278.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=203

 Score =  406 bits (1044),  Expect = 9e-112, Method: Compositional matrix adjust.
 Identities = 201/203 (99%), Positives = 202/203 (99%), Gaps = 0/203 (0%)

Query  1    LGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT  60
            +GRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT
Sbjct  1    MGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT  60

Query  61   SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS  120
            SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLD GNNDTPTPPTPKLRLARKPGHHRRS
Sbjct  61   SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDAGNNDTPTPPTPKLRLARKPGHHRRS  120

Query  121  EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ  180
            EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ
Sbjct  121  EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ  180

Query  181  YGADGWPVRLGCGVGGAARGDQR  203
            YGADGWPVRLGCGVGGAARGDQR
Sbjct  181  YGADGWPVRLGCGVGGAARGDQR  203


>gi|31791882|ref|NP_854375.1| hypothetical protein Mb0717 [Mycobacterium bovis AF2122/97]
 gi|121636619|ref|YP_976842.1| hypothetical protein BCG_0747 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989091|ref|YP_002643778.1| hypothetical protein JTY_0717 [Mycobacterium bovis BCG str. Tokyo 
172]
 6 more sequence titles
 Length=109

 Score =  177 bits (450),  Expect = 6e-43, Method: Compositional matrix adjust.
 Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    LGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT  60
            +GRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT
Sbjct  1    MGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT  60

Query  61   SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP  103
            SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP
Sbjct  61   SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP  103


>gi|289446257|ref|ZP_06436001.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289568641|ref|ZP_06448868.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289573306|ref|ZP_06453533.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289419215|gb|EFD16416.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537737|gb|EFD42315.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289542395|gb|EFD46043.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=101

 Score =  162 bits (411),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 94/95 (99%), Positives = 95/95 (100%), Gaps = 0/95 (0%)

Query  9    VHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSRW  68
            +HVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSRW
Sbjct  1    MHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSRW  60

Query  69   TPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP  103
            TPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP
Sbjct  61   TPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP  95


>gi|31791883|ref|NP_854376.1| hypothetical protein Mb0718 [Mycobacterium bovis AF2122/97]
 gi|121636620|ref|YP_976843.1| hypothetical protein BCG_0748 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989092|ref|YP_002643779.1| hypothetical protein JTY_0718 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31617470|emb|CAD93580.1| CONSERVED HYPOTHETICAL PROTEIN [SECOND PART] [Mycobacterium bovis 
AF2122/97]
 gi|121492267|emb|CAL70734.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224772205|dbj|BAH25011.1| hypothetical protein JTY_0718 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341600636|emb|CCC63306.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=77

 Score =  153 bits (386),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 76/77 (99%), Positives = 77/77 (100%), Gaps = 0/77 (0%)

Query  127  VLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQYGADGW  186
            +LRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQYGADGW
Sbjct  1    MLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQYGADGW  60

Query  187  PVRLGCGVGGAARGDQR  203
            PVRLGCGVGGAARGDQR
Sbjct  61   PVRLGCGVGGAARGDQR  77


>gi|15610775|ref|NP_218156.1| hypothetical protein Rv3639c [Mycobacterium tuberculosis H37Rv]
 gi|15843249|ref|NP_338286.1| hypothetical protein MT3741 [Mycobacterium tuberculosis CDC1551]
 gi|148663502|ref|YP_001285025.1| hypothetical protein MRA_3675 [Mycobacterium tuberculosis H37Ra]
 41 more sequence titles
 Length=188

 Score = 64.3 bits (155),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 36/58 (63%), Positives = 40/58 (69%), Gaps = 3/58 (5%)

Query  7    RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTT-AHTCHTSHT  63
            R VHVDRVR  G ER LRA  +  PI RPQ TLGDGANGLPLA CT T A+  H  ++
Sbjct  117  RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAACTKTGAYVPHLPYS  172


>gi|31794809|ref|NP_857302.1| hypothetical protein Mb3663c [Mycobacterium bovis AF2122/97]
 gi|121639552|ref|YP_979776.1| hypothetical protein BCG_3697c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224992049|ref|YP_002646738.1| hypothetical protein JTY_3698 [Mycobacterium bovis BCG str. Tokyo 
172]
 8 more sequence titles
 Length=188

 Score = 63.9 bits (154),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 36/58 (63%), Positives = 40/58 (69%), Gaps = 3/58 (5%)

Query  7    RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTT-AHTCHTSHT  63
            R VHVDRVR  G ER LRA  +  PI RPQ TLGDGANGLPLA CT T A+  H  ++
Sbjct  117  RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAACTKTGAYVPHLPYS  172


>gi|340628603|ref|YP_004747055.1| hypothetical protein MCAN_36501 [Mycobacterium canettii CIPT 
140010059]
 gi|340006793|emb|CCC45981.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=188

 Score = 62.8 bits (151),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 39/73 (54%), Positives = 45/73 (62%), Gaps = 4/73 (5%)

Query  7    RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTT-AHTCHTSHTHP  65
            R VHVDRVR  G ER LRA  +  PI RPQ TLGDG NGLPLA CT T A+  H  ++ P
Sbjct  117  RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGTNGLPLAACTKTGAYVPHLPYS-P  173

Query  66   SRWTPNPVPATKG  78
                P P  + +G
Sbjct  174  IAVDPQPSASQQG  186


>gi|289568046|ref|ZP_06448273.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289541799|gb|EFD45448.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=43

 Score = 57.8 bits (138),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 29/37 (79%), Positives = 29/37 (79%), Gaps = 0/37 (0%)

Query  31  PIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSR  67
           PI RPQ TLGDGANGLPLA  T T HT  TSHTHPSR
Sbjct  7   PILRPQFTLGDGANGLPLAGRTKTPHTYQTSHTHPSR  43


>gi|115938031|ref|XP_794804.2| PREDICTED: similar to microtubule associated serine/threonine 
kinase 2 [Strongylocentrotus purpuratus]
 gi|115965720|ref|XP_001177065.1| PREDICTED: similar to microtubule associated serine/threonine 
kinase 2 [Strongylocentrotus purpuratus]
Length=1549

 Score = 34.7 bits (78),  Expect = 7.5, Method: Composition-based stats.
 Identities = 32/117 (28%), Positives = 50/117 (43%), Gaps = 21/117 (17%)

Query  5     GNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHT---CHTS  61
             GNRR  V  + L+   R     NQSP    P  +        PLAV T+  H+    +T+
Sbjct  1404  GNRRKSVGHIPLSPLAR---TPNQSPAPKSPVRSPS------PLAVVTSLGHSPGSSNTT  1454

Query  62    HTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHR  118
              ++P+    +P   T   P  +    ++       + +  TPP+P LR A  P H +
Sbjct  1455  QSYPAHMLSSP---TLAAPMKVKTKKYM------RSRNLETPPSPLLRRALSPDHEK  1502



Lambda     K      H
   0.319    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 223603106580




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40