BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0698
Length=203
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607838|ref|NP_215212.1| hypothetical protein Rv0698 [Mycoba... 408 2e-112
gi|298524190|ref|ZP_07011599.1| conserved hypothetical protein [... 406 9e-112
gi|31791882|ref|NP_854375.1| hypothetical protein Mb0717 [Mycoba... 177 6e-43
gi|289446257|ref|ZP_06436001.1| conserved hypothetical protein [... 162 2e-38
gi|31791883|ref|NP_854376.1| hypothetical protein Mb0718 [Mycoba... 153 2e-35
gi|15610775|ref|NP_218156.1| hypothetical protein Rv3639c [Mycob... 64.3 1e-08
gi|31794809|ref|NP_857302.1| hypothetical protein Mb3663c [Mycob... 63.9 1e-08
gi|340628603|ref|YP_004747055.1| hypothetical protein MCAN_36501... 62.8 3e-08
gi|289568046|ref|ZP_06448273.1| conserved hypothetical protein [... 57.8 1e-06
gi|115938031|ref|XP_794804.2| PREDICTED: similar to microtubule ... 34.7 7.5
>gi|15607838|ref|NP_215212.1| hypothetical protein Rv0698 [Mycobacterium tuberculosis H37Rv]
gi|148660473|ref|YP_001281996.1| hypothetical protein MRA_0706 [Mycobacterium tuberculosis H37Ra]
gi|148821903|ref|YP_001286657.1| hypothetical protein TBFG_10712 [Mycobacterium tuberculosis F11]
21 more sequence titles
Length=203
Score = 408 bits (1049), Expect = 2e-112, Method: Compositional matrix adjust.
Identities = 202/203 (99%), Positives = 203/203 (100%), Gaps = 0/203 (0%)
Query 1 LGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT 60
+GRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT
Sbjct 1 MGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT 60
Query 61 SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS 120
SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS
Sbjct 61 SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS 120
Query 121 EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ 180
EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ
Sbjct 121 EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ 180
Query 181 YGADGWPVRLGCGVGGAARGDQR 203
YGADGWPVRLGCGVGGAARGDQR
Sbjct 181 YGADGWPVRLGCGVGGAARGDQR 203
>gi|298524190|ref|ZP_07011599.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298493984|gb|EFI29278.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=203
Score = 406 bits (1044), Expect = 9e-112, Method: Compositional matrix adjust.
Identities = 201/203 (99%), Positives = 202/203 (99%), Gaps = 0/203 (0%)
Query 1 LGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT 60
+GRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT
Sbjct 1 MGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT 60
Query 61 SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHRRS 120
SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLD GNNDTPTPPTPKLRLARKPGHHRRS
Sbjct 61 SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDAGNNDTPTPPTPKLRLARKPGHHRRS 120
Query 121 EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ 180
EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ
Sbjct 121 EYDADSVLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQ 180
Query 181 YGADGWPVRLGCGVGGAARGDQR 203
YGADGWPVRLGCGVGGAARGDQR
Sbjct 181 YGADGWPVRLGCGVGGAARGDQR 203
>gi|31791882|ref|NP_854375.1| hypothetical protein Mb0717 [Mycobacterium bovis AF2122/97]
gi|121636619|ref|YP_976842.1| hypothetical protein BCG_0747 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989091|ref|YP_002643778.1| hypothetical protein JTY_0717 [Mycobacterium bovis BCG str. Tokyo
172]
6 more sequence titles
Length=109
Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Query 1 LGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT 60
+GRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT
Sbjct 1 MGRRGNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHT 60
Query 61 SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP 103
SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP
Sbjct 61 SHTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP 103
>gi|289446257|ref|ZP_06436001.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289568641|ref|ZP_06448868.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289573306|ref|ZP_06453533.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289419215|gb|EFD16416.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289537737|gb|EFD42315.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289542395|gb|EFD46043.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=101
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/95 (99%), Positives = 95/95 (100%), Gaps = 0/95 (0%)
Query 9 VHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSRW 68
+HVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSRW
Sbjct 1 MHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSRW 60
Query 69 TPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP 103
TPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP
Sbjct 61 TPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTP 95
>gi|31791883|ref|NP_854376.1| hypothetical protein Mb0718 [Mycobacterium bovis AF2122/97]
gi|121636620|ref|YP_976843.1| hypothetical protein BCG_0748 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989092|ref|YP_002643779.1| hypothetical protein JTY_0718 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31617470|emb|CAD93580.1| CONSERVED HYPOTHETICAL PROTEIN [SECOND PART] [Mycobacterium bovis
AF2122/97]
gi|121492267|emb|CAL70734.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224772205|dbj|BAH25011.1| hypothetical protein JTY_0718 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341600636|emb|CCC63306.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=77
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/77 (99%), Positives = 77/77 (100%), Gaps = 0/77 (0%)
Query 127 VLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQYGADGW 186
+LRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQYGADGW
Sbjct 1 MLRRKDTSRRCVQADDVRCVQLVQDPRRGRVELGGYRAELTVGRRAAVNCQRPQYGADGW 60
Query 187 PVRLGCGVGGAARGDQR 203
PVRLGCGVGGAARGDQR
Sbjct 61 PVRLGCGVGGAARGDQR 77
>gi|15610775|ref|NP_218156.1| hypothetical protein Rv3639c [Mycobacterium tuberculosis H37Rv]
gi|15843249|ref|NP_338286.1| hypothetical protein MT3741 [Mycobacterium tuberculosis CDC1551]
gi|148663502|ref|YP_001285025.1| hypothetical protein MRA_3675 [Mycobacterium tuberculosis H37Ra]
41 more sequence titles
Length=188
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/58 (63%), Positives = 40/58 (69%), Gaps = 3/58 (5%)
Query 7 RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTT-AHTCHTSHT 63
R VHVDRVR G ER LRA + PI RPQ TLGDGANGLPLA CT T A+ H ++
Sbjct 117 RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAACTKTGAYVPHLPYS 172
>gi|31794809|ref|NP_857302.1| hypothetical protein Mb3663c [Mycobacterium bovis AF2122/97]
gi|121639552|ref|YP_979776.1| hypothetical protein BCG_3697c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992049|ref|YP_002646738.1| hypothetical protein JTY_3698 [Mycobacterium bovis BCG str. Tokyo
172]
8 more sequence titles
Length=188
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/58 (63%), Positives = 40/58 (69%), Gaps = 3/58 (5%)
Query 7 RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTT-AHTCHTSHT 63
R VHVDRVR G ER LRA + PI RPQ TLGDGANGLPLA CT T A+ H ++
Sbjct 117 RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAACTKTGAYVPHLPYS 172
>gi|340628603|ref|YP_004747055.1| hypothetical protein MCAN_36501 [Mycobacterium canettii CIPT
140010059]
gi|340006793|emb|CCC45981.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=188
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/73 (54%), Positives = 45/73 (62%), Gaps = 4/73 (5%)
Query 7 RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTT-AHTCHTSHTHP 65
R VHVDRVR G ER LRA + PI RPQ TLGDG NGLPLA CT T A+ H ++ P
Sbjct 117 RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGTNGLPLAACTKTGAYVPHLPYS-P 173
Query 66 SRWTPNPVPATKG 78
P P + +G
Sbjct 174 IAVDPQPSASQQG 186
>gi|289568046|ref|ZP_06448273.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289541799|gb|EFD45448.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=43
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/37 (79%), Positives = 29/37 (79%), Gaps = 0/37 (0%)
Query 31 PIFRPQNTLGDGANGLPLAVCTTTAHTCHTSHTHPSR 67
PI RPQ TLGDGANGLPLA T T HT TSHTHPSR
Sbjct 7 PILRPQFTLGDGANGLPLAGRTKTPHTYQTSHTHPSR 43
>gi|115938031|ref|XP_794804.2| PREDICTED: similar to microtubule associated serine/threonine
kinase 2 [Strongylocentrotus purpuratus]
gi|115965720|ref|XP_001177065.1| PREDICTED: similar to microtubule associated serine/threonine
kinase 2 [Strongylocentrotus purpuratus]
Length=1549
Score = 34.7 bits (78), Expect = 7.5, Method: Composition-based stats.
Identities = 32/117 (28%), Positives = 50/117 (43%), Gaps = 21/117 (17%)
Query 5 GNRRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVCTTTAHT---CHTS 61
GNRR V + L+ R NQSP P + PLAV T+ H+ +T+
Sbjct 1404 GNRRKSVGHIPLSPLAR---TPNQSPAPKSPVRSPS------PLAVVTSLGHSPGSSNTT 1454
Query 62 HTHPSRWTPNPVPATKGVPAGLVQATFIIENLDPGNNDTPTPPTPKLRLARKPGHHR 118
++P+ +P T P + ++ + + TPP+P LR A P H +
Sbjct 1455 QSYPAHMLSSP---TLAAPMKVKTKKYM------RSRNLETPPSPLLRRALSPDHEK 1502
Lambda K H
0.319 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 223603106580
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40