BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0699

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607839|ref|NP_215213.1|  hypothetical protein Rv0699 [Mycoba...   139    2e-31
gi|294996193|ref|ZP_06801884.1|  hypothetical protein Mtub2_17241...   136    1e-30


>gi|15607839|ref|NP_215213.1| hypothetical protein Rv0699 [Mycobacterium tuberculosis H37Rv]
 gi|31791884|ref|NP_854377.1| hypothetical protein Mb0719 [Mycobacterium bovis AF2122/97]
 gi|121636621|ref|YP_976844.1| hypothetical protein BCG_0749 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 18 more sequence titles
 
gi|148660474|ref|YP_001281997.1| hypothetical protein MRA_0707 [Mycobacterium tuberculosis H37Ra]
 gi|167967939|ref|ZP_02550216.1| hypothetical protein MtubH3_07838 [Mycobacterium tuberculosis 
H37Ra]
 gi|224989093|ref|YP_002643780.1| hypothetical protein JTY_0719 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|254549659|ref|ZP_05140106.1| hypothetical protein Mtube_04220 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289760826|ref|ZP_06520204.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|297633197|ref|ZP_06950977.1| hypothetical protein MtubK4_03695 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730177|ref|ZP_06959295.1| hypothetical protein MtubKR_03750 [Mycobacterium tuberculosis 
KZN R506]
 gi|313657504|ref|ZP_07814384.1| hypothetical protein MtubKV_03740 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630768|ref|YP_004722410.1| hypothetical protein MAF_07080 [Mycobacterium africanum GM041182]
 gi|1806166|emb|CAB06462.1| HYPOTHETICAL PROTEIN Rv0699 [Mycobacterium tuberculosis H37Rv]
 gi|31617471|emb|CAD93581.1| HYPOTHETICAL PROTEIN Mb0719 [Mycobacterium bovis AF2122/97]
 gi|121492268|emb|CAL70735.1| Hypothetical protein BCG_0749 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148504626|gb|ABQ72435.1| hypothetical protein MRA_0707 [Mycobacterium tuberculosis H37Ra]
 gi|224772206|dbj|BAH25012.1| hypothetical protein JTY_0719 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289708332|gb|EFD72348.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|339330124|emb|CCC25780.1| hypothetical protein MAF_07080 [Mycobacterium africanum GM041182]
 gi|341600637|emb|CCC63307.1| hypothetical protein BCGM_0714 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218524|gb|AEM99154.1| hypothetical protein MTCTRI2_0715 [Mycobacterium tuberculosis 
CTRI-2]
Length=73

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MGDRRVDLLAAKDSEIRRSMGAVPVGAGSSQVATSWASDRCIRCRAAILSADCANLARAN  60
           MGDRRVDLLAAKDSEIRRSMGAVPVGAGSSQVATSWASDRCIRCRAAILSADCANLARAN
Sbjct  1   MGDRRVDLLAAKDSEIRRSMGAVPVGAGSSQVATSWASDRCIRCRAAILSADCANLARAN  60

Query  61  SRGGLAVGGSAVS  73
           SRGGLAVGGSAVS
Sbjct  61  SRGGLAVGGSAVS  73


>gi|294996193|ref|ZP_06801884.1| hypothetical protein Mtub2_17241 [Mycobacterium tuberculosis 
210]
 gi|326905079|gb|EGE52012.1| hypothetical protein TBPG_03006 [Mycobacterium tuberculosis W-148]
Length=73

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 72/73 (99%), Positives = 72/73 (99%), Gaps = 0/73 (0%)

Query  1   MGDRRVDLLAAKDSEIRRSMGAVPVGAGSSQVATSWASDRCIRCRAAILSADCANLARAN  60
           MGDRRVDLLAAK SEIRRSMGAVPVGAGSSQVATSWASDRCIRCRAAILSADCANLARAN
Sbjct  1   MGDRRVDLLAAKGSEIRRSMGAVPVGAGSSQVATSWASDRCIRCRAAILSADCANLARAN  60

Query  61  SRGGLAVGGSAVS  73
           SRGGLAVGGSAVS
Sbjct  61  SRGGLAVGGSAVS  73



Lambda     K      H
   0.318    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131942442484




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40