BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv0707 Length=274 Score E Sequences producing significant alignments: (Bits) Value gi|15607847|ref|NP_215221.1| 30S ribosomal protein S3 [Mycobacte... 548 4e-154 gi|2113872|emb|CAA73678.1| rpsC [Mycobacterium bovis BCG] 544 5e-153 gi|240167709|ref|ZP_04746368.1| 30S ribosomal protein S3 [Mycoba... 520 9e-146 gi|118616577|ref|YP_904909.1| 30S ribosomal protein S3 [Mycobact... 519 2e-145 gi|333991972|ref|YP_004524586.1| 30S ribosomal protein S3 RpsC [... 503 1e-140 gi|15827996|ref|NP_302259.1| 30S ribosomal protein S3 [Mycobacte... 499 2e-139 gi|221230473|ref|YP_002503889.1| 30S ribosomal protein S3 [Mycob... 498 6e-139 gi|108797992|ref|YP_638189.1| 30S ribosomal protein S3 [Mycobact... 496 1e-138 gi|118473160|ref|YP_885825.1| 30S ribosomal protein S3 [Mycobact... 489 2e-136 gi|118465225|ref|YP_883600.1| 30S ribosomal protein S3 [Mycobact... 487 9e-136 gi|169630894|ref|YP_001704543.1| 30S ribosomal protein S3 [Mycob... 487 9e-136 gi|145225619|ref|YP_001136297.1| 30S ribosomal protein S3 [Mycob... 482 2e-134 gi|41410265|ref|NP_963101.1| 30S ribosomal protein S3 [Mycobacte... 481 4e-134 gi|342861797|ref|ZP_08718442.1| 30S ribosomal protein S3 [Mycoba... 481 6e-134 gi|296168563|ref|ZP_06850367.1| 30S ribosomal protein S3 [Mycoba... 478 5e-133 gi|306802322|ref|ZP_07438990.1| ribosomal protein S3 [Mycobacter... 475 4e-132 gi|306966729|ref|ZP_07479390.1| ribosomal protein S3 [Mycobacter... 473 2e-131 gi|120402322|ref|YP_952151.1| 30S ribosomal protein S3 [Mycobact... 456 1e-126 gi|312140912|ref|YP_004008248.1| 30S ribosomal protein s3 rpsc [... 432 3e-119 gi|296141109|ref|YP_003648352.1| 30S ribosomal protein S3 [Tsuka... 431 6e-119 gi|254776901|ref|ZP_05218417.1| 30S ribosomal protein S3 [Mycoba... 430 1e-118 gi|254822781|ref|ZP_05227782.1| 30S ribosomal protein S3 [Mycoba... 429 3e-118 gi|343927777|ref|ZP_08767245.1| 30S ribosomal protein S3 [Gordon... 429 3e-118 gi|262203618|ref|YP_003274826.1| 30S ribosomal protein S3 [Gordo... 428 4e-118 gi|111023102|ref|YP_706074.1| 30S ribosomal protein S3 [Rhodococ... 427 1e-117 gi|226305347|ref|YP_002765305.1| 30S ribosomal protein S3 [Rhodo... 426 1e-117 gi|331699170|ref|YP_004335409.1| 30S ribosomal protein S3 [Pseud... 426 2e-117 gi|54022706|ref|YP_116948.1| 30S ribosomal protein S3 [Nocardia ... 426 2e-117 gi|298524198|ref|ZP_07011607.1| 30S ribosomal protein S3 [Mycoba... 422 2e-116 gi|326385093|ref|ZP_08206763.1| 30S ribosomal protein S3 [Gordon... 422 2e-116 gi|256380592|ref|YP_003104252.1| 30S ribosomal protein S3 [Actin... 412 2e-113 gi|325000486|ref|ZP_08121598.1| ribosomal protein S3 [Pseudonoca... 407 8e-112 gi|302523999|ref|ZP_07276341.1| ribosomal protein S3 [Streptomyc... 407 1e-111 gi|319948717|ref|ZP_08022838.1| 30S ribosomal protein S3 [Dietzi... 404 5e-111 gi|333918153|ref|YP_004491734.1| 30S ribosomal protein S3 [Amyco... 404 8e-111 gi|317507415|ref|ZP_07965149.1| ribosomal protein S3 [Segnilipar... 400 1e-109 gi|284992868|ref|YP_003411422.1| 30S ribosomal protein S3 [Geode... 397 8e-109 gi|258651369|ref|YP_003200525.1| 30S ribosomal protein S3 [Nakam... 396 2e-108 gi|296392591|ref|YP_003657475.1| 30S ribosomal protein S3 [Segni... 394 1e-107 gi|257054476|ref|YP_003132308.1| 30S ribosomal protein S3P [Sacc... 391 5e-107 gi|145596428|ref|YP_001160725.1| 30S ribosomal protein S3 [Salin... 390 9e-107 gi|159039828|ref|YP_001539081.1| 30S ribosomal protein S3 [Salin... 389 3e-106 gi|238061115|ref|ZP_04605824.1| 30S ribosomal protein S3 [Microm... 388 4e-106 gi|134103258|ref|YP_001108919.1| 30S ribosomal protein S3 [Sacch... 387 8e-106 gi|300782614|ref|YP_003762905.1| 30S ribosomal protein S3 [Amyco... 385 3e-105 gi|302869966|ref|YP_003838603.1| 30S ribosomal protein S3 [Micro... 375 4e-102 gi|315501427|ref|YP_004080314.1| 30S ribosomal protein S3 [Micro... 375 4e-102 gi|111220552|ref|YP_711346.1| 30S ribosomal protein S3 [Frankia ... 375 5e-102 gi|213964938|ref|ZP_03393137.1| ribosomal protein S3 [Corynebact... 372 5e-101 gi|269128510|ref|YP_003301880.1| 30S ribosomal protein S3 [Therm... 371 5e-101 >gi|15607847|ref|NP_215221.1| 30S ribosomal protein S3 [Mycobacterium tuberculosis H37Rv] gi|15840114|ref|NP_335151.1| 30S ribosomal protein S3 [Mycobacterium tuberculosis CDC1551] gi|31791892|ref|NP_854385.1| 30S ribosomal protein S3 [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=274 Score = 548 bits (1411), Expect = 4e-154, Method: Compositional matrix adjust. Identities = 273/274 (99%), Positives = 274/274 (100%), Gaps = 0/274 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGEEAAPDAAAPVEAQSTES 274 SGTTATGTDAGRAAGGEEAAPDAAAPVEAQSTES Sbjct 241 SGTTATGTDAGRAAGGEEAAPDAAAPVEAQSTES 274 >gi|2113872|emb|CAA73678.1| rpsC [Mycobacterium bovis BCG] Length=274 Score = 544 bits (1402), Expect = 5e-153, Method: Compositional matrix adjust. Identities = 271/274 (99%), Positives = 273/274 (99%), Gaps = 0/274 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEM+RSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMNRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGEEAAPDAAAPVEAQSTES 274 SGTTATGTDAGR AGGEEAAPDAAAPVEAQSTES Sbjct 241 SGTTATGTDAGRPAGGEEAAPDAAAPVEAQSTES 274 >gi|240167709|ref|ZP_04746368.1| 30S ribosomal protein S3 [Mycobacterium kansasii ATCC 12478] Length=277 Score = 520 bits (1339), Expect = 9e-146, Method: Compositional matrix adjust. Identities = 264/277 (96%), Positives = 268/277 (97%), Gaps = 4/277 (1%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAA PAG +RPRRERP+GTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAVPAGPERPRRERPAGTRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGEE---AAPDAAAP-VEAQSTE 273 SGTTATGTDAGRAAGGEE A + AAP VEAQSTE Sbjct 241 SGTTATGTDAGRAAGGEEGTAAVGNEAAPAVEAQSTE 277 >gi|118616577|ref|YP_904909.1| 30S ribosomal protein S3 [Mycobacterium ulcerans Agy99] gi|183981059|ref|YP_001849350.1| 30S ribosomal protein S3, RpsC [Mycobacterium marinum M] gi|152060883|sp|A0PM69.1|RS3_MYCUA RecName: Full=30S ribosomal protein S3 gi|226697734|sp|B2HSN7.1|RS3_MYCMM RecName: Full=30S ribosomal protein S3 gi|118568687|gb|ABL03438.1| 30S ribosomal protein S3, RpsC [Mycobacterium ulcerans Agy99] gi|183174385|gb|ACC39495.1| 30S ribosomal protein S3, RpsC [Mycobacterium marinum M] Length=275 Score = 519 bits (1336), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 260/275 (95%), Positives = 267/275 (98%), Gaps = 1/275 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLLSSGLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAA PAGADRPRRERP+G+RPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAVPAGADRPRRERPAGSRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGEE-AAPDAAAPVEAQSTES 274 SGTTATGT+AGRA G EE AA ++A EAQSTES Sbjct 241 SGTTATGTEAGRAVGSEEPAAAESATTPEAQSTES 275 >gi|333991972|ref|YP_004524586.1| 30S ribosomal protein S3 RpsC [Mycobacterium sp. JDM601] gi|333487940|gb|AEF37332.1| 30S ribosomal protein S3 RpsC [Mycobacterium sp. JDM601] Length=285 Score = 503 bits (1295), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 252/272 (93%), Positives = 258/272 (95%), Gaps = 1/272 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESTAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAP+ ADRPRRERPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPS-ADRPRRERPSGTRPRRSGA 239 Query 241 SGTTATGTDAGRAAGGEEAAPDAAAPVEAQST 272 SGTTAT TDAGRAA E+ A VE Q + Sbjct 240 SGTTATSTDAGRAAETTESTAAAEPAVEGQGS 271 >gi|15827996|ref|NP_302259.1| 30S ribosomal protein S3 [Mycobacterium leprae TN] gi|3122828|sp|O32987.1|RS3_MYCLE RecName: Full=30S ribosomal protein S3 gi|2344838|emb|CAB11440.1| ribosomal protein S3 [Mycobacterium leprae] gi|13093549|emb|CAC30811.1| 30S ribosomal protein S3 [Mycobacterium leprae] Length=281 Score = 499 bits (1284), Expect = 2e-139, Method: Compositional matrix adjust. Identities = 246/260 (95%), Positives = 253/260 (98%), Gaps = 0/260 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITT WKSRWYADKQYAEYVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTGWKSRWYADKQYAEYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLT KQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTCKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGL+EAKTTFGRIGVKVWIYKGDIVGGKRE+ A APAGA+R RRERPSGTRPRRSGA Sbjct 181 DIDYGLHEAKTTFGRIGVKVWIYKGDIVGGKREVTAVAPAGAERARRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGEEAA 260 +GTT TGTDAGRA GGEE+A Sbjct 241 AGTTVTGTDAGRAVGGEESA 260 >gi|221230473|ref|YP_002503889.1| 30S ribosomal protein S3 [Mycobacterium leprae Br4923] gi|254764537|sp|B8ZSB3.1|RS3_MYCLB RecName: Full=30S ribosomal protein S3 gi|219933580|emb|CAR71953.1| 30S ribosomal protein S3 [Mycobacterium leprae Br4923] Length=281 Score = 498 bits (1281), Expect = 6e-139, Method: Compositional matrix adjust. Identities = 245/260 (95%), Positives = 253/260 (98%), Gaps = 0/260 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITT WKSRWYADKQYAEYVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTGWKSRWYADKQYAEYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLT KQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTCKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGL+EAKTTFGRIGVKVWIYKGDIVGGKRE+ A APAGA+R RRERPSGTRPRRSGA Sbjct 181 DIDYGLHEAKTTFGRIGVKVWIYKGDIVGGKREVTAVAPAGAERARRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGEEAA 260 +GTT TGTDAGRA GG+E+A Sbjct 241 AGTTVTGTDAGRAVGGQESA 260 >gi|108797992|ref|YP_638189.1| 30S ribosomal protein S3 [Mycobacterium sp. MCS] gi|119867088|ref|YP_937040.1| 30S ribosomal protein S3 [Mycobacterium sp. KMS] gi|126433654|ref|YP_001069345.1| 30S ribosomal protein S3 [Mycobacterium sp. JLS] 6 more sequence titles Length=287 Score = 496 bits (1277), Expect = 1e-138, Method: Compositional matrix adjust. Identities = 245/258 (95%), Positives = 251/258 (98%), Gaps = 0/258 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQY +YVKEDVAIRRLL++GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYKDYVKEDVAIRRLLATGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLT KQVQLNILEVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTKKQVQLNILEVKNPESVAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKREL AAAPAGADRPRRERPSG+RPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTAAAPAGADRPRRERPSGSRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGEE 258 SGTTAT TDAGRAA G + Sbjct 241 SGTTATSTDAGRAASGTQ 258 >gi|118473160|ref|YP_885825.1| 30S ribosomal protein S3 [Mycobacterium smegmatis str. MC2 155] gi|152060880|sp|A0QSD7.1|RS3_MYCS2 RecName: Full=30S ribosomal protein S3 gi|118174447|gb|ABK75343.1| ribosomal protein S3 [Mycobacterium smegmatis str. MC2 155] Length=275 Score = 489 bits (1259), Expect = 2e-136, Method: Compositional matrix adjust. Identities = 241/254 (95%), Positives = 251/254 (99%), Gaps = 1/254 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITT+WKSRWYADKQY +YVKEDVAIR+LL++GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTEWKSRWYADKQYKDYVKEDVAIRKLLATGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPA +DRPRRERPSGTRPRRSG+ Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPA-SDRPRRERPSGTRPRRSGS 239 Query 241 SGTTATGTDAGRAA 254 +GTTAT T+AGRAA Sbjct 240 AGTTATSTEAGRAA 253 >gi|118465225|ref|YP_883600.1| 30S ribosomal protein S3 [Mycobacterium avium 104] gi|152060876|sp|A0QL12.1|RS3_MYCA1 RecName: Full=30S ribosomal protein S3 gi|118166512|gb|ABK67409.1| ribosomal protein S3 [Mycobacterium avium 104] Length=280 Score = 487 bits (1253), Expect = 9e-136, Method: Compositional matrix adjust. Identities = 247/254 (98%), Positives = 254/254 (100%), Gaps = 0/254 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEV+NPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVRNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGD+VGGKRELAAAAPAGA+RPRRERPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDVVGGKRELAAAAPAGAERPRRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGRAA 254 SGTTATGT+AGRAA Sbjct 241 SGTTATGTEAGRAA 254 >gi|169630894|ref|YP_001704543.1| 30S ribosomal protein S3 [Mycobacterium abscessus ATCC 19977] gi|226697732|sp|B1MGE4.1|RS3_MYCA9 RecName: Full=30S ribosomal protein S3 gi|169242861|emb|CAM63889.1| 30S ribosomal protein S3 [Mycobacterium abscessus] Length=277 Score = 487 bits (1253), Expect = 9e-136, Method: Compositional matrix adjust. Identities = 249/278 (90%), Positives = 261/278 (94%), Gaps = 5/278 (1%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLL++GLERAGIA VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLATGLERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPE++AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPEAEAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAA---APAGA-DRPRRERPSGTRPR 236 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAA A GA DRPRRERP+GTRPR Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAGVEAGRGAPDRPRRERPAGTRPR 240 Query 237 RSGASGTTATGTDAGRAAGGEEAAPDAAAPVEAQSTES 274 RSG+SGTTAT T+AGRAA E A D A+ A++TES Sbjct 241 RSGSSGTTATSTEAGRAA-AETPASDGASAPSAETTES 277 >gi|145225619|ref|YP_001136297.1| 30S ribosomal protein S3 [Mycobacterium gilvum PYR-GCK] gi|315445972|ref|YP_004078851.1| 30S ribosomal protein S3P [Mycobacterium sp. Spyr1] gi|189045020|sp|A4TEB8.1|RS3_MYCGI RecName: Full=30S ribosomal protein S3 gi|145218105|gb|ABP47509.1| SSU ribosomal protein S3P [Mycobacterium gilvum PYR-GCK] gi|315264275|gb|ADU01017.1| SSU ribosomal protein S3P [Mycobacterium sp. Spyr1] Length=278 Score = 482 bits (1241), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 246/257 (96%), Positives = 253/257 (99%), Gaps = 0/257 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+Y+KEDVAIR+LL++GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYIKEDVAIRKLLATGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLT KQVQLNILEVKNPES+AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTKKQVQLNILEVKNPESRAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGRAAGGE 257 SGTTAT TDAGRAA E Sbjct 241 SGTTATSTDAGRAATEE 257 >gi|41410265|ref|NP_963101.1| 30S ribosomal protein S3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|61215641|sp|Q73SA8.1|RS3_MYCPA RecName: Full=30S ribosomal protein S3 gi|41399099|gb|AAS06717.1| RpsC [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460662|gb|EGO39553.1| ribosomal protein S3, bacterial type [Mycobacterium avium subsp. paratuberculosis S397] Length=280 Score = 481 bits (1239), Expect = 4e-134, Method: Compositional matrix adjust. Identities = 245/254 (97%), Positives = 253/254 (99%), Gaps = 0/254 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINP+GFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPYGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEV+NPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVRNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DI YGLYEAKTTFGRIGVKVWIYKGD+VGGKRELAAAAPAGA+RPRRERPSGTRPRRSGA Sbjct 181 DIGYGLYEAKTTFGRIGVKVWIYKGDVVGGKRELAAAAPAGAERPRRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGRAA 254 SGTTATGT+AGRAA Sbjct 241 SGTTATGTEAGRAA 254 >gi|342861797|ref|ZP_08718442.1| 30S ribosomal protein S3 [Mycobacterium colombiense CECT 3035] gi|342130614|gb|EGT83918.1| 30S ribosomal protein S3 [Mycobacterium colombiense CECT 3035] Length=278 Score = 481 bits (1237), Expect = 6e-134, Method: Compositional matrix adjust. Identities = 244/252 (97%), Positives = 251/252 (99%), Gaps = 0/252 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEV+NPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVRNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGD+VGGKRELAAAAPAGA+RPRRERPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDVVGGKRELAAAAPAGAERPRRERPSGTRPRRSGA 240 Query 241 SGTTATGTDAGR 252 SGTTAT T+AGR Sbjct 241 SGTTATSTEAGR 252 >gi|296168563|ref|ZP_06850367.1| 30S ribosomal protein S3 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896626|gb|EFG76265.1| 30S ribosomal protein S3 [Mycobacterium parascrofulaceum ATCC BAA-614] Length=279 Score = 478 bits (1229), Expect = 5e-133, Method: Compositional matrix adjust. Identities = 243/248 (98%), Positives = 247/248 (99%), Gaps = 0/248 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEV+NPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVRNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 Query 241 SGTTATGT 248 SGTTAT T Sbjct 241 SGTTATST 248 >gi|306802322|ref|ZP_07438990.1| ribosomal protein S3 [Mycobacterium tuberculosis SUMu008] gi|308350987|gb|EFP39838.1| ribosomal protein S3 [Mycobacterium tuberculosis SUMu008] Length=241 Score = 475 bits (1222), Expect = 4e-132, Method: Compositional matrix adjust. Identities = 234/235 (99%), Positives = 235/235 (100%), Gaps = 0/235 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRP 235 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRP Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRP 235 >gi|306966729|ref|ZP_07479390.1| ribosomal protein S3 [Mycobacterium tuberculosis SUMu009] gi|308355583|gb|EFP44434.1| ribosomal protein S3 [Mycobacterium tuberculosis SUMu009] Length=277 Score = 473 bits (1216), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 233/235 (99%), Positives = 234/235 (99%), Gaps = 0/235 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEM RSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMRRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRP 235 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRP Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRP 235 >gi|120402322|ref|YP_952151.1| 30S ribosomal protein S3 [Mycobacterium vanbaalenii PYR-1] gi|152060884|sp|A1T4P5.1|RS3_MYCVP RecName: Full=30S ribosomal protein S3 gi|119955140|gb|ABM12145.1| SSU ribosomal protein S3P [Mycobacterium vanbaalenii PYR-1] Length=280 Score = 456 bits (1174), Expect = 1e-126, Method: Compositional matrix adjust. Identities = 241/254 (95%), Positives = 249/254 (99%), Gaps = 1/254 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITT+WKSRWYADKQYA+Y+KEDVAIR+LL++GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTEWKSRWYADKQYADYIKEDVAIRKLLATGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLT KQVQLNILEVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTKKQVQLNILEVKNPESVAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKREL AAAPA ADRPRR+RPSGTRPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTAAAPA-ADRPRRDRPSGTRPRRSGA 239 Query 241 SGTTATGTDAGRAA 254 SGTTAT TDAGRAA Sbjct 240 SGTTATSTDAGRAA 253 >gi|312140912|ref|YP_004008248.1| 30S ribosomal protein s3 rpsc [Rhodococcus equi 103S] gi|325675450|ref|ZP_08155134.1| 30S ribosomal protein S3 [Rhodococcus equi ATCC 33707] gi|311890251|emb|CBH49569.1| 30S ribosomal protein S3 RpsC [Rhodococcus equi 103S] gi|325553421|gb|EGD23099.1| 30S ribosomal protein S3 [Rhodococcus equi ATCC 33707] Length=265 Score = 432 bits (1111), Expect = 3e-119, Method: Compositional matrix adjust. Identities = 221/246 (90%), Positives = 232/246 (95%), Gaps = 4/246 (1%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIR+LL++G+ERAGIA VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRKLLATGMERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIRA+LEKLTGKQVQLNILEVKN E++AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRAELEKLTGKQVQLNILEVKNAEAEAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKREL+AAAPA R +RPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELSAAAPAERP----RRERPSRPRRSGA 236 Query 241 SGTTAT 246 +GTTAT Sbjct 237 AGTTAT 242 >gi|296141109|ref|YP_003648352.1| 30S ribosomal protein S3 [Tsukamurella paurometabola DSM 20162] gi|296029243|gb|ADG80013.1| ribosomal protein S3 [Tsukamurella paurometabola DSM 20162] Length=268 Score = 431 bits (1108), Expect = 6e-119, Method: Compositional matrix adjust. Identities = 224/265 (85%), Positives = 239/265 (91%), Gaps = 3/265 (1%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIR+ L+ GLERAGI+ +EIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRKKLTDGLERAGISKIEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR++LEKLTGKQVQLNILEVKN E+ AQLVAQG+A Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRSELEKLTGKQVQLNILEVKNSEADAQLVAQGIA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGL+EAKTTFGRIGVKVWIYKGD+VGG+RELAA + DR R RPRRSGA Sbjct 181 DIDYGLHEAKTTFGRIGVKVWIYKGDVVGGRRELAAPSN-NDDRRGPRRERPQRPRRSGA 239 Query 241 SGTTATGTDAGRAAGGEEAAPDAAA 265 SGTTAT T+AGRA G+EA A A Sbjct 240 SGTTATSTEAGRA--GDEAVTAAPA 262 >gi|254776901|ref|ZP_05218417.1| 30S ribosomal protein S3 [Mycobacterium avium subsp. avium ATCC 25291] Length=224 Score = 430 bits (1106), Expect = 1e-118, Method: Compositional matrix adjust. Identities = 218/224 (98%), Positives = 224/224 (100%), Gaps = 0/224 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEV+NPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVRNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADR 224 DIDYGLYEAKTTFGRIGVKVWIYKGD+VGGKRELAAAAPAGA+R Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDVVGGKRELAAAAPAGAER 224 >gi|254822781|ref|ZP_05227782.1| 30S ribosomal protein S3 [Mycobacterium intracellulare ATCC 13950] Length=227 Score = 429 bits (1102), Expect = 3e-118, Method: Compositional matrix adjust. Identities = 218/224 (98%), Positives = 224/224 (100%), Gaps = 0/224 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQY++YVKEDVAIRRLLS+GLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYSDYVKEDVAIRRLLSTGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEV+NPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVRNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADR 224 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGA+R Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGAER 224 >gi|343927777|ref|ZP_08767245.1| 30S ribosomal protein S3 [Gordonia alkanivorans NBRC 16433] gi|343762418|dbj|GAA14171.1| 30S ribosomal protein S3 [Gordonia alkanivorans NBRC 16433] Length=268 Score = 429 bits (1102), Expect = 3e-118, Method: Compositional matrix adjust. Identities = 227/249 (92%), Positives = 234/249 (94%), Gaps = 3/249 (1%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIR+LLS+GLERAGIA VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRKLLSTGLERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR DLEKLTGKQVQLNILEVKN ES+AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGDLEKLTGKQVQLNILEVKNAESEAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGG+RELAAAAPA DR +RPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGRRELAAAAPAAEDRR---PRRPSRPRRSGA 237 Query 241 SGTTATGTD 249 SGTTAT TD Sbjct 238 SGTTATSTD 246 >gi|262203618|ref|YP_003274826.1| 30S ribosomal protein S3 [Gordonia bronchialis DSM 43247] gi|262086965|gb|ACY22933.1| ribosomal protein S3 [Gordonia bronchialis DSM 43247] Length=272 Score = 428 bits (1101), Expect = 4e-118, Method: Compositional matrix adjust. Identities = 227/249 (92%), Positives = 233/249 (94%), Gaps = 3/249 (1%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIR+LLS GLERAGIA VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRKLLSQGLERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR DLEKLTGKQVQLNILEVKN ES+AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGDLEKLTGKQVQLNILEVKNAESEAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGG+RELAAAAPA DR +RPRRSGA Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGRRELAAAAPAAEDRR---PRRPSRPRRSGA 237 Query 241 SGTTATGTD 249 SGTTAT TD Sbjct 238 SGTTATSTD 246 >gi|111023102|ref|YP_706074.1| 30S ribosomal protein S3 [Rhodococcus jostii RHA1] gi|226365601|ref|YP_002783384.1| 30S ribosomal protein S3 [Rhodococcus opacus B4] gi|122955192|sp|Q0S3H0.1|RS3_RHOSR RecName: Full=30S ribosomal protein S3 gi|254764542|sp|C1B018.1|RS3_RHOOB RecName: Full=30S ribosomal protein S3 gi|110822632|gb|ABG97916.1| 30S ribosomal protein S3 [Rhodococcus jostii RHA1] gi|226244091|dbj|BAH54439.1| 30S ribosomal protein S3 [Rhodococcus opacus B4] Length=268 Score = 427 bits (1097), Expect = 1e-117, Method: Compositional matrix adjust. Identities = 209/223 (94%), Positives = 218/223 (98%), Gaps = 2/223 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIR+LL++G+ERAGIA VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRKLLATGMERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR++LEKLTGKQVQLNILEVKN E++AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRSELEKLTGKQVQLNILEVKNAEAEAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAA--AAPAG 221 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAA AAPAG Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAANVAAPAG 223 >gi|226305347|ref|YP_002765305.1| 30S ribosomal protein S3 [Rhodococcus erythropolis PR4] gi|229489648|ref|ZP_04383511.1| ribosomal protein S3 [Rhodococcus erythropolis SK121] gi|259495255|sp|C0ZW31.1|RS3_RHOE4 RecName: Full=30S ribosomal protein S3 gi|226184462|dbj|BAH32566.1| 30S ribosomal protein S3 [Rhodococcus erythropolis PR4] gi|229323745|gb|EEN89503.1| ribosomal protein S3 [Rhodococcus erythropolis SK121] Length=268 Score = 426 bits (1096), Expect = 1e-117, Method: Compositional matrix adjust. Identities = 209/223 (94%), Positives = 218/223 (98%), Gaps = 2/223 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIR+LL++G+ERAGIA VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRKLLATGMERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR++LEKLTGKQVQLNILEVKN E++AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRSELEKLTGKQVQLNILEVKNAEAEAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAA--AAPAG 221 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAA AAPAG Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAANTAAPAG 223 >gi|331699170|ref|YP_004335409.1| 30S ribosomal protein S3 [Pseudonocardia dioxanivorans CB1190] gi|326953859|gb|AEA27556.1| ribosomal protein S3 [Pseudonocardia dioxanivorans CB1190] Length=271 Score = 426 bits (1095), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 223/272 (82%), Positives = 234/272 (87%), Gaps = 5/272 (1%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDV IRR+LS G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVEIRRMLSKGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR LEKLT KQVQLNILEVKN ES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGALEKLTKKQVQLNILEVKNAESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMR P VKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRSPQVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYGL+EA+TTFGRIGVKVWIYKGD+VGG+RE PA A+ R R RRSGA Sbjct 181 DIDYGLFEARTTFGRIGVKVWIYKGDVVGGRRE---GVPAAAEPGRGPRRERPARRRSGA 237 Query 241 SGTTATGTDAGRAAGGEEAAPDAAAPVEAQST 272 SGTTAT TDAGRAA E A + A +A ST Sbjct 238 SGTTATSTDAGRAAA--EQAGGSVATTDAPST 267 >gi|54022706|ref|YP_116948.1| 30S ribosomal protein S3 [Nocardia farcinica IFM 10152] gi|61215424|sp|Q5Z1V7.1|RS3_NOCFA RecName: Full=30S ribosomal protein S3 gi|54014214|dbj|BAD55584.1| putative ribosomal protein S3 [Nocardia farcinica IFM 10152] Length=267 Score = 426 bits (1094), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 208/222 (94%), Positives = 217/222 (98%), Gaps = 1/222 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYA+YVKEDVAIR+LL++G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRKLLATGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIRA+LEKLTGKQVQLNILEVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRAELEKLTGKQVQLNILEVKNPESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMR PNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRSPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKREL-AAAAPAG 221 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKREL AA+APAG Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTAASAPAG 222 >gi|298524198|ref|ZP_07011607.1| 30S ribosomal protein S3 [Mycobacterium tuberculosis 94_M4241A] gi|298493992|gb|EFI29286.1| 30S ribosomal protein S3 [Mycobacterium tuberculosis 94_M4241A] Length=212 Score = 422 bits (1086), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 207/209 (99%), Positives = 208/209 (99%), Gaps = 0/209 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVG 209 DIDYGLYEAKTTFGRIGVKVWIYKGDI G Sbjct 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIRG 209 >gi|326385093|ref|ZP_08206763.1| 30S ribosomal protein S3 [Gordonia neofelifaecis NRRL B-59395] gi|326196178|gb|EGD53382.1| 30S ribosomal protein S3 [Gordonia neofelifaecis NRRL B-59395] Length=267 Score = 422 bits (1085), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 206/220 (94%), Positives = 213/220 (97%), Gaps = 0/220 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDW SRWYADKQYAEYVKEDVAIR+LLS+GLERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWNSRWYADKQYAEYVKEDVAIRKLLSTGLERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR DLEKLTGKQVQLNILEVKNPE+ AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGDLEKLTGKQVQLNILEVKNPEADAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMRQP VKGIRVQCSGRLGGAEMSR EFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRQPGVKGIRVQCSGRLGGAEMSRKEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPA 220 DIDYGLYEA+TTFGRIGVKVWIYKGDIVGG+RELAAAAPA Sbjct 181 DIDYGLYEARTTFGRIGVKVWIYKGDIVGGRRELAAAAPA 220 >gi|256380592|ref|YP_003104252.1| 30S ribosomal protein S3 [Actinosynnema mirum DSM 43827] gi|255924895|gb|ACU40406.1| ribosomal protein S3 [Actinosynnema mirum DSM 43827] Length=275 Score = 412 bits (1060), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 212/255 (84%), Positives = 224/255 (88%), Gaps = 9/255 (3%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYV EDV IR+LLS G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVAEDVKIRKLLSRGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR +LEKLT KQVQLNILEVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGELEKLTKKQVQLNILEVKNPESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMR VKGIRVQC GRLGGAEMSRSE YR+GRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRSSQVKGIRVQCGGRLGGAEMSRSEHYRDGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGG---KRELAAAAPAGADRPRRERPSGTRP-- 235 DIDYG +EA+TTFGRIGVKVWIYKGD+VGG KRE AAP+ PRR+R G RP Sbjct 181 DIDYGFFEARTTFGRIGVKVWIYKGDVVGGISAKRE-RDAAPSAERAPRRDR--GDRPNR 237 Query 236 -RRSGASGTTATGTD 249 RRSGASGTTAT T+ Sbjct 238 ARRSGASGTTATSTE 252 >gi|325000486|ref|ZP_08121598.1| ribosomal protein S3 [Pseudonocardia sp. P1] Length=230 Score = 407 bits (1047), Expect = 8e-112, Method: Compositional matrix adjust. Identities = 200/230 (87%), Positives = 212/230 (93%), Gaps = 0/230 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQY+EYVKEDV IR++LS G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYSEYVKEDVEIRKMLSKGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR +LEKLT KQVQLNILEVK ES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGNLEKLTKKQVQLNILEVKASESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMR P VKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRSPQVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERP 230 DIDYGL+EA+T+FGRIGVKVWIYKGD+VGG+RE A AA A PRRERP Sbjct 181 DIDYGLFEARTSFGRIGVKVWIYKGDVVGGRREGAPAAEAPGRGPRRERP 230 >gi|302523999|ref|ZP_07276341.1| ribosomal protein S3 [Streptomyces sp. AA4] gi|302432894|gb|EFL04710.1| ribosomal protein S3 [Streptomyces sp. AA4] Length=281 Score = 407 bits (1045), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 212/273 (78%), Positives = 230/273 (85%), Gaps = 14/273 (5%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYV EDV IR+LLS+G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVAEDVKIRKLLSTGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR LEKLT KQVQLNILEVKNPE+ AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGALEKLTKKQVQLNILEVKNPEADAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQ++MR P VKGIRVQC GRLGGAEMSRSE YR+GRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQTSMRSPQVKGIRVQCGGRLGGAEMSRSEHYRDGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKR------ELAAAAPAGADRPRRERPSGTR 234 DIDYG +EAKTTFGRIGVKVWIYKG++VGG + A+AA R R +RPS R Sbjct 181 DIDYGFFEAKTTFGRIGVKVWIYKGELVGGLKARAERDAAASAADRAPRRDRGDRPS--R 238 Query 235 PRRSGASGTTATGTDAGR------AAGGEEAAP 261 PRRSG+SGTT T T+AGR + EAAP Sbjct 239 PRRSGSSGTTPTSTEAGRAAAAAKSDNATEAAP 271 >gi|319948717|ref|ZP_08022838.1| 30S ribosomal protein S3 [Dietzia cinnamea P4] gi|319437619|gb|EFV92618.1| 30S ribosomal protein S3 [Dietzia cinnamea P4] Length=272 Score = 404 bits (1039), Expect = 5e-111, Method: Compositional matrix adjust. Identities = 202/258 (79%), Positives = 225/258 (88%), Gaps = 6/258 (2%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKI+PHGFRLGIT+DW S+W+ADKQYA+YV ED+ IR+LLS G+ERAGI+ V+I RTR Sbjct 1 MGQKIHPHGFRLGITSDWTSKWFADKQYADYVSEDIKIRQLLSKGMERAGISGVDISRTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRV VDIHTARPGIVIGRRG EADR+R +LEKLTGKQV LNILE+KN E+ AQLVAQG+A Sbjct 61 DRVHVDIHTARPGIVIGRRGAEADRLRGELEKLTGKQVHLNILEIKNTEADAQLVAQGIA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRK IQSAMRQP VKGI+V CSGRLGGAEMSRSE Y EGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKGIQSAMRQPQVKGIKVVCSGRLGGAEMSRSERYHEGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPA----GADR-PRRERPSGTRP 235 +IDYG YEAKTTFGRIGVKVWIYKGD+VGG+RE A + GADR PRRER +G RP Sbjct 181 EIDYGTYEAKTTFGRIGVKVWIYKGDVVGGRRESDQYAQSSNRGGADRGPRRERGAG-RP 239 Query 236 RRSGASGTTATGTDAGRA 253 RRSGA GTTAT T+ GRA Sbjct 240 RRSGAQGTTATSTETGRA 257 >gi|333918153|ref|YP_004491734.1| 30S ribosomal protein S3 [Amycolicicoccus subflavus DQS3-9A1] gi|333480374|gb|AEF38934.1| 30S ribosomal protein S3 [Amycolicicoccus subflavus DQS3-9A1] Length=270 Score = 404 bits (1038), Expect = 8e-111, Method: Compositional matrix adjust. Identities = 197/223 (89%), Positives = 206/223 (93%), Gaps = 0/223 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDV IR+LL +GLERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVEIRKLLKTGLERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDI TARPGIVIGRRGTEADRIRA LEKLT KQVQLNILEVKN +S AQLVAQGVA Sbjct 61 DRVRVDIFTARPGIVIGRRGTEADRIRAQLEKLTAKQVQLNILEVKNADSDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMR P+VKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRHPHVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGAD 223 DIDYGL+EAKTTFGRIGVKVWIYKGD+VGG+RE P D Sbjct 181 DIDYGLHEAKTTFGRIGVKVWIYKGDVVGGRREADVVVPGADD 223 >gi|317507415|ref|ZP_07965149.1| ribosomal protein S3 [Segniliparus rugosus ATCC BAA-974] gi|316254300|gb|EFV13636.1| ribosomal protein S3 [Segniliparus rugosus ATCC BAA-974] Length=272 Score = 400 bits (1028), Expect = 1e-109, Method: Compositional matrix adjust. Identities = 214/274 (79%), Positives = 229/274 (84%), Gaps = 6/274 (2%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKI+PHGFRLGITTDW+SRW+ADKQY +Y+KED+ IR+LL SG+ERAGIA VEIERTR Sbjct 1 MGQKIHPHGFRLGITTDWRSRWFADKQYKDYIKEDIQIRKLLISGMERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR LEKLTGKQVQLNILEVKN E+ AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGQLEKLTGKQVQLNILEVKNSETIAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMR P VKGI+V C GRLGGAEMSRSE+YREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRHPQVKGIKVMCGGRLGGAEMSRSEYYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYG +EAKTTFGRIGVKVWIYKGDIVGG R AA A A+ R RPRRSGA Sbjct 181 DIDYGFHEAKTTFGRIGVKVWIYKGDIVGG-RVEHAAQLAAAEEAGARRDRAARPRRSGA 239 Query 241 SGTTATGTDAGRAAGGEEAAPDAAAPVEAQSTES 274 SGTTAT T+AGRA P A EA S ES Sbjct 240 SGTTATSTEAGRA-----VEPQAEPVAEASSNES 268 >gi|284992868|ref|YP_003411422.1| 30S ribosomal protein S3 [Geodermatophilus obscurus DSM 43160] gi|284066113|gb|ADB77051.1| ribosomal protein S3 [Geodermatophilus obscurus DSM 43160] Length=308 Score = 397 bits (1021), Expect = 8e-109, Method: Compositional matrix adjust. Identities = 202/254 (80%), Positives = 224/254 (89%), Gaps = 1/254 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQK+NPHGFRLGITTD+KSRWYADK Y +YVKEDVAIR+L+S G+ERAGI+ VEIERTR Sbjct 1 MGQKVNPHGFRLGITTDYKSRWYADKLYKDYVKEDVAIRKLMSKGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR +LEKLTGKQVQLNILEVKNPE+ AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGELEKLTGKQVQLNILEVKNPEADAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RV+FRRAMRKA+QSA R P VKGIRVQCSGRLGG EMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSSRVSFRRAMRKAMQSAQRSPQVKGIRVQCSGRLGGTEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 +IDYG+YEA+TTFGRIGVKVWIYKGD+ G + E A A A R +R + RRSG+ Sbjct 181 NIDYGIYEARTTFGRIGVKVWIYKGDVSGSRAE-REALEALAARQQRRERAQRPQRRSGS 239 Query 241 SGTTATGTDAGRAA 254 SGTTA GT+AGRAA Sbjct 240 SGTTAGGTEAGRAA 253 >gi|258651369|ref|YP_003200525.1| 30S ribosomal protein S3 [Nakamurella multipartita DSM 44233] gi|258554594|gb|ACV77536.1| ribosomal protein S3 [Nakamurella multipartita DSM 44233] Length=279 Score = 396 bits (1017), Expect = 2e-108, Method: Compositional matrix adjust. Identities = 211/275 (77%), Positives = 229/275 (84%), Gaps = 13/275 (4%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDW SRWYADK YA+YV EDV IR+L+S G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWNSRWYADKSYADYVAEDVQIRKLMSKGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR LEKLTGKQVQLNILEV+NPES AQLVAQ VA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGQLEKLTGKQVQLNILEVRNPESDAQLVAQAVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRV+FRRAMRK++QSA R P VKGIR+QCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVSFRRAMRKSMQSAQRSPQVKGIRIQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADR-------PRRERPSGT 233 DIDYG +EAKTTFGRIGVKVWIYKGD VG E AA A A R R ERP+ Sbjct 181 DIDYGFFEAKTTFGRIGVKVWIYKGDKVGTLAEQRAAEAAAAQRGAREGRGDRAERPA-- 238 Query 234 RPRRSGASGTTATGTDAGRAAGGEEAAPDAAAPVE 268 RRSG+SGTT T T+AGRAA E +P+ A PV+ Sbjct 239 -RRRSGSSGTTPTSTEAGRAA--VEESPE-ALPVD 269 >gi|296392591|ref|YP_003657475.1| 30S ribosomal protein S3 [Segniliparus rotundus DSM 44985] gi|296179738|gb|ADG96644.1| ribosomal protein S3 [Segniliparus rotundus DSM 44985] Length=282 Score = 394 bits (1011), Expect = 1e-107, Method: Compositional matrix adjust. Identities = 207/256 (81%), Positives = 222/256 (87%), Gaps = 1/256 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKI+PHGFRLGITTDW+SRW+ADKQY +Y+KED+ IR+LL SG+ERAGIA VEIERTR Sbjct 1 MGQKIHPHGFRLGITTDWRSRWFADKQYKDYIKEDIQIRKLLVSGMERAGIAKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR LEKLTGKQVQLNILEVKN E+ AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGQLEKLTGKQVQLNILEVKNSETIAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQSAMR VKGI+V C GRLGGAEMSRSE+YREGRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQSAMRHQQVKGIKVMCGGRLGGAEMSRSEYYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYG +EAKTTFGRIGVKVWIYKGDIVGG R AA A A+ R RPRRSGA Sbjct 181 DIDYGFHEAKTTFGRIGVKVWIYKGDIVGG-RVEHAAQLAAAEEAGARRDRAARPRRSGA 239 Query 241 SGTTATGTDAGRAAGG 256 SGTTAT T+AGRA G Sbjct 240 SGTTATSTEAGRAGQG 255 >gi|257054476|ref|YP_003132308.1| 30S ribosomal protein S3P [Saccharomonospora viridis DSM 43017] gi|256584348|gb|ACU95481.1| SSU ribosomal protein S3P [Saccharomonospora viridis DSM 43017] Length=286 Score = 391 bits (1005), Expect = 5e-107, Method: Compositional matrix adjust. Identities = 183/210 (88%), Positives = 199/210 (95%), Gaps = 0/210 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQY+EYV EDV IR+LLS+G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYSEYVAEDVKIRKLLSTGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 +RVRVDIHTARPGIVIGRRG EADRIR LEKLTGKQVQLNILEVKNPE+ AQLVAQG+A Sbjct 61 ERVRVDIHTARPGIVIGRRGAEADRIRGALEKLTGKQVQLNILEVKNPEADAQLVAQGIA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQ++MR P VKGIRVQCSGRLGGAEMSRSE YR+GRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQTSMRSPQVKGIRVQCSGRLGGAEMSRSEHYRDGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGG 210 DIDYG +EA+TTFGRIGVKVWIYKGD++GG Sbjct 181 DIDYGFFEARTTFGRIGVKVWIYKGDLIGG 210 >gi|145596428|ref|YP_001160725.1| 30S ribosomal protein S3 [Salinispora tropica CNB-440] gi|189045333|sp|A4XBP0.1|RS3_SALTO RecName: Full=30S ribosomal protein S3 gi|145305765|gb|ABP56347.1| SSU ribosomal protein S3P [Salinispora tropica CNB-440] Length=288 Score = 390 bits (1003), Expect = 9e-107, Method: Compositional matrix adjust. Identities = 198/255 (78%), Positives = 223/255 (88%), Gaps = 7/255 (2%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQK++PHGFRLGI+TDWKSRW+ADK Y +YV EDV IRR++S GLERAGI+ V+IERTR Sbjct 1 MGQKVHPHGFRLGISTDWKSRWFADKLYKDYVGEDVKIRRMMSKGLERAGISKVDIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGR+G EADRIR LEKLTGKQVQLNI+EVK+PES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRKGAEADRIRGKLEKLTGKQVQLNIIEVKSPESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RV+FRRAMRKA+QSAM+ P KGIRVQ SGRLGGAEMSR+EFYREGRVPLHTLRA Sbjct 121 EQLSSRVSFRRAMRKAMQSAMKNPVCKGIRVQVSGRLGGAEMSRTEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPS-GTRPR--R 237 +I+YG +EA+TTFGRIGVKVWIYKGD V G RE A AP+ RPRRER RPR R Sbjct 181 NIEYGFFEARTTFGRIGVKVWIYKGDAVPG-RETPAEAPS---RPRRERGDRSERPRRGR 236 Query 238 SGASGTTATGTDAGR 252 SG+SGTTA GT+AGR Sbjct 237 SGSSGTTAGGTEAGR 251 >gi|159039828|ref|YP_001539081.1| 30S ribosomal protein S3 [Salinispora arenicola CNS-205] gi|189045330|sp|A8M523.1|RS3_SALAI RecName: Full=30S ribosomal protein S3 gi|157918663|gb|ABW00091.1| ribosomal protein S3 [Salinispora arenicola CNS-205] Length=288 Score = 389 bits (999), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 197/255 (78%), Positives = 223/255 (88%), Gaps = 7/255 (2%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQK++PHGFRLGI+TDWKSRW+ADK Y +Y+ EDV IRR++S GLERAGI+ V+IERTR Sbjct 1 MGQKVHPHGFRLGISTDWKSRWFADKLYKDYIGEDVKIRRMMSKGLERAGISKVDIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGR+G EADRIR LEKLTGKQVQLNI+EVK+PES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRKGAEADRIRGKLEKLTGKQVQLNIIEVKSPESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RV+FRRAMRKA+QSAM+ P KGIRVQ SGRLGGAEMSR+EFYREGRVPLHTLRA Sbjct 121 EQLSSRVSFRRAMRKAMQSAMKNPVCKGIRVQVSGRLGGAEMSRTEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPS-GTRPR--R 237 +I+YG +EA+TTFGRIGVKVWIYKGD V G RE A AP+ RPRRER RPR R Sbjct 181 NIEYGFFEARTTFGRIGVKVWIYKGDAVPG-RETPAEAPS---RPRRERGDRSERPRRGR 236 Query 238 SGASGTTATGTDAGR 252 SG+SGTTA GT+AGR Sbjct 237 SGSSGTTAGGTEAGR 251 >gi|238061115|ref|ZP_04605824.1| 30S ribosomal protein S3 [Micromonospora sp. ATCC 39149] gi|237882926|gb|EEP71754.1| 30S ribosomal protein S3 [Micromonospora sp. ATCC 39149] Length=288 Score = 388 bits (997), Expect = 4e-106, Method: Compositional matrix adjust. Identities = 193/252 (77%), Positives = 220/252 (88%), Gaps = 1/252 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQK++P GFRLGI+TDWKSRW+ADK Y +Y+ EDV IRR++S GLERAGI+ V+IERTR Sbjct 1 MGQKVHPTGFRLGISTDWKSRWFADKLYKDYIGEDVKIRRMMSKGLERAGISKVDIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGR+G EADRIR +LEKLTGKQVQLNI+EVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRKGAEADRIRGELEKLTGKQVQLNIIEVKNPESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RV+FRRAMRKA+QSAM+ P KGIRVQ SGRLGGAEMSR+EFYREGRVPLHTLRA Sbjct 121 EQLSSRVSFRRAMRKAMQSAMKNPVCKGIRVQVSGRLGGAEMSRTEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 +I+YG +EA+TTFGRIGVKVWIYKGD V G RE A AP+ R R +RP R RSG+ Sbjct 181 NIEYGFFEARTTFGRIGVKVWIYKGDAVPG-RETPAEAPSRPRRERGDRPERPRRGRSGS 239 Query 241 SGTTATGTDAGR 252 SGTTA GT+AGR Sbjct 240 SGTTAGGTEAGR 251 >gi|134103258|ref|YP_001108919.1| 30S ribosomal protein S3 [Saccharopolyspora erythraea NRRL 2338] gi|291007949|ref|ZP_06565922.1| 30S ribosomal protein S3 [Saccharopolyspora erythraea NRRL 2338] gi|152060902|sp|A4FPL9.1|RS3_SACEN RecName: Full=30S ribosomal protein S3 gi|133915881|emb|CAM05994.1| 30S ribosomal protein S3 [Saccharopolyspora erythraea NRRL 2338] Length=298 Score = 387 bits (995), Expect = 8e-106, Method: Compositional matrix adjust. Identities = 185/213 (87%), Positives = 198/213 (93%), Gaps = 0/213 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQY+EYV EDV IRR LS G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYSEYVAEDVKIRRRLSRGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 +RVRVDIHTARPGIVIGRRG EADRIR LEKLTGKQVQLNILEVKN E+ AQLVAQGVA Sbjct 61 ERVRVDIHTARPGIVIGRRGAEADRIRGSLEKLTGKQVQLNILEVKNAEADAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRV+FRRAMRKAIQSAMR P VKGIRVQC GRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSNRVSFRRAMRKAIQSAMRSPQVKGIRVQCGGRLGGAEMSRSEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRE 213 DIDYG +EA+TTFGRIGVKVWIYKG++VGG ++ Sbjct 181 DIDYGFFEARTTFGRIGVKVWIYKGELVGGLKQ 213 >gi|300782614|ref|YP_003762905.1| 30S ribosomal protein S3 [Amycolatopsis mediterranei U32] gi|299792128|gb|ADJ42503.1| small subunit ribosomal protein S3 [Amycolatopsis mediterranei U32] gi|340523985|gb|AEK39190.1| 30S ribosomal protein S3 [Amycolatopsis mediterranei S699] Length=279 Score = 385 bits (990), Expect = 3e-105, Method: Compositional matrix adjust. Identities = 202/251 (81%), Positives = 217/251 (87%), Gaps = 6/251 (2%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTDWKSRWYADKQYAEYV EDV IR+LL++G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVAEDVKIRKLLATGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR LEKLT KQVQLNILEVKNPE+ AQLVAQ VA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGALEKLTKKQVQLNILEVKNPEADAQLVAQAVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLSNRVAFRRAMRKAIQ++MR P VKGIRVQC GRLGGAEMSRSE YR+GRVPLHTLRA Sbjct 121 EQLSNRVAFRRAMRKAIQTSMRSPQVKGIRVQCGGRLGGAEMSRSEHYRDGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGG-----KRELAAAAPAGADRPRRERPSGTRP 235 DIDYG +EAKTTFGRIGVKVWIYKG++VGG R+ A AP R R +RP Sbjct 181 DIDYGFFEAKTTFGRIGVKVWIYKGELVGGLKAREARDAAERAPR-GGRDRDRSDRPSRP 239 Query 236 RRSGASGTTAT 246 RRSGASGTTAT Sbjct 240 RRSGASGTTAT 250 >gi|302869966|ref|YP_003838603.1| 30S ribosomal protein S3 [Micromonospora aurantiaca ATCC 27029] gi|302572825|gb|ADL49027.1| ribosomal protein S3 [Micromonospora aurantiaca ATCC 27029] Length=295 Score = 375 bits (963), Expect = 4e-102, Method: Compositional matrix adjust. Identities = 193/253 (77%), Positives = 221/253 (88%), Gaps = 1/253 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQK++P GFRLGI+TDWKSRW+ADK Y +Y+ EDV IRR++S GLERAGI+ V+IERTR Sbjct 1 MGQKVHPTGFRLGISTDWKSRWFADKLYKDYIGEDVKIRRMMSKGLERAGISKVDIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGR+G EADRIR +LEKLTGKQVQLNI+EVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRKGAEADRIRGELEKLTGKQVQLNIIEVKNPESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RV+FRRAMRKA+QSAM+ P KGIRVQ SGRLGGAEMSR+EFYREGRVPLHTLRA Sbjct 121 EQLSSRVSFRRAMRKAMQSAMKNPACKGIRVQVSGRLGGAEMSRTEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPA-GADRPRRERPSGTRPRRSG 239 +I+YG +EA+TTFGRIGVKVWIYKGD V G+ A AAP+ G R R +RP R RSG Sbjct 181 NIEYGFFEARTTFGRIGVKVWIYKGDAVPGREAPAEAAPSRGPRRDRGDRPDRPRRGRSG 240 Query 240 ASGTTATGTDAGR 252 +SGTTA GT+AGR Sbjct 241 SSGTTAGGTEAGR 253 >gi|315501427|ref|YP_004080314.1| 30S ribosomal protein S3 [Micromonospora sp. L5] gi|315408046|gb|ADU06163.1| ribosomal protein S3 [Micromonospora sp. L5] Length=295 Score = 375 bits (963), Expect = 4e-102, Method: Compositional matrix adjust. Identities = 193/253 (77%), Positives = 221/253 (88%), Gaps = 1/253 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQK++P GFRLGI+TDWKSRW+ADK Y +Y+ EDV IRR++S GLERAGI+ V+IERTR Sbjct 1 MGQKVHPTGFRLGISTDWKSRWFADKLYKDYIGEDVKIRRMMSKGLERAGISKVDIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGR+G EADRIR +LEKLTGKQVQLNI+EVKNPES AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRKGAEADRIRGELEKLTGKQVQLNIIEVKNPESDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RV+FRRAMRKA+QSAM+ P KGIRVQ SGRLGGAEMSR+EFYREGRVPLHTLRA Sbjct 121 EQLSSRVSFRRAMRKAMQSAMKNPACKGIRVQVSGRLGGAEMSRTEFYREGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPA-GADRPRRERPSGTRPRRSG 239 +I+YG +EA+TTFGRIGVKVWIYKGD V G+ A AAP+ G R R +RP R RSG Sbjct 181 NIEYGFFEARTTFGRIGVKVWIYKGDAVPGREAPAEAAPSRGPRRDRGDRPDRPRRGRSG 240 Query 240 ASGTTATGTDAGR 252 +SGTTA GT+AGR Sbjct 241 SSGTTAGGTEAGR 253 >gi|111220552|ref|YP_711346.1| 30S ribosomal protein S3 [Frankia alni ACN14a] gi|122954579|sp|Q0RRR5.1|RS3_FRAAA RecName: Full=30S ribosomal protein S3 gi|111148084|emb|CAJ59752.1| 30S ribosomal protein S3 [Frankia alni ACN14a] Length=350 Score = 375 bits (962), Expect = 5e-102, Method: Compositional matrix adjust. Identities = 201/282 (72%), Positives = 226/282 (81%), Gaps = 13/282 (4%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQK+NPHGFRLGIT+++ SRWYADKQY YV EDV IR+++S G+ERAGI+ V+IERT+ Sbjct 1 MGQKVNPHGFRLGITSEFTSRWYADKQYKAYVGEDVKIRKMMSRGMERAGISRVDIERTQ 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 R+RVDIHTARPGIVIGRRG EADRIR DLEKLTGKQVQLNILEVKNPE AQLVAQGVA Sbjct 61 GRLRVDIHTARPGIVIGRRGAEADRIRGDLEKLTGKQVQLNILEVKNPEVDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RV+FRRAMRKA+Q+AM+ KGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA Sbjct 121 EQLSSRVSFRRAMRKAMQTAMKG-GAKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 179 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSGA 240 DIDYG YEA+T FGRIGVKVWIYKGDIV + E A A + + R R RSG+ Sbjct 180 DIDYGFYEARTNFGRIGVKVWIYKGDIVQSRAEREAQE---ALQRQTRRDRPRRGPRSGS 236 Query 241 SGTTATGTDAGRAA--------GGEEAAPDAAAPVEAQSTES 274 SGTT GTDAGRAA GG A + AA EA +TES Sbjct 237 SGTTQGGTDAGRAAARSERRGRGGNAPAAETAAS-EAGATES 277 >gi|213964938|ref|ZP_03393137.1| ribosomal protein S3 [Corynebacterium amycolatum SK46] gi|213952474|gb|EEB63857.1| ribosomal protein S3 [Corynebacterium amycolatum SK46] Length=246 Score = 372 bits (954), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 184/239 (77%), Positives = 208/239 (88%), Gaps = 5/239 (2%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKI+PHG RLGI++DWKSRWYADKQYA+Y+ ED+ IR LLS+GLERAGI+DV IERTR Sbjct 1 MGQKIHPHGLRLGISSDWKSRWYADKQYADYLAEDIKIRDLLSTGLERAGISDVVIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG+EADRIR LEKLTGKQVQLNILEVKN ++ A+LVAQ +A Sbjct 61 DRVRVDIHTARPGIVIGRRGSEADRIRGQLEKLTGKQVQLNILEVKNIDADAKLVAQSIA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQL+NRVAFRRAMRKAIQSAMRQP+VKGI+V CSGRLGGAEM R+E Y EGRVPLHTLRA Sbjct 121 EQLANRVAFRRAMRKAIQSAMRQPHVKGIKVVCSGRLGGAEMGRTERYHEGRVPLHTLRA 180 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAGADRPRRERPSGTRPRRSG 239 +IDYG +EA TTFGRIGVKVWIYKGD++GG+RE + AG R RR RPRR G Sbjct 181 EIDYGTHEAHTTFGRIGVKVWIYKGDVIGGRRE--SEINAGNARQRR---GNDRPRRGG 234 >gi|269128510|ref|YP_003301880.1| 30S ribosomal protein S3 [Thermomonospora curvata DSM 43183] gi|268313468|gb|ACY99842.1| ribosomal protein S3 [Thermomonospora curvata DSM 43183] Length=272 Score = 371 bits (953), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 181/206 (88%), Positives = 192/206 (94%), Gaps = 1/206 (0%) Query 1 VGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAGIADVEIERTR 60 +GQKINPHGFRLGITTD+KSRWYADK Y +YVKEDVAIRR+L G+ERAGI+ VEIERTR Sbjct 1 MGQKINPHGFRLGITTDFKSRWYADKLYKDYVKEDVAIRRMLQKGMERAGISKVEIERTR 60 Query 61 DRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVA 120 DRVRVDIHTARPGIVIGRRG EADRIR DLEKLTGKQVQLNILEVKNPE AQLVAQGVA Sbjct 61 DRVRVDIHTARPGIVIGRRGAEADRIRGDLEKLTGKQVQLNILEVKNPEIDAQLVAQGVA 120 Query 121 EQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 180 EQLS+RVAFRRAMRKAIQSAM+ KGI+VQCSGRLGGAEMSRSEFYREG+VPLHTLRA Sbjct 121 EQLSSRVAFRRAMRKAIQSAMK-SGAKGIKVQCSGRLGGAEMSRSEFYREGQVPLHTLRA 179 Query 181 DIDYGLYEAKTTFGRIGVKVWIYKGD 206 DIDYG YEA+TTFGRIGVKVWIYKGD Sbjct 180 DIDYGFYEARTTFGRIGVKVWIYKGD 205 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 429277556614 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40