BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0730
Length=242
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607870|ref|NP_215244.1| hypothetical protein Rv0730 [Mycoba... 486 1e-135
gi|339630799|ref|YP_004722441.1| hypothetical protein MAF_07400 ... 484 4e-135
gi|340625751|ref|YP_004744203.1| hypothetical protein MCAN_07351... 484 5e-135
gi|254549691|ref|ZP_05140138.1| hypothetical protein Mtube_04380... 470 8e-131
gi|167968288|ref|ZP_02550565.1| hypothetical protein MtubH3_0976... 456 1e-126
gi|118616604|ref|YP_904936.1| hypothetical protein MUL_0825 [Myc... 409 2e-112
gi|183981087|ref|YP_001849378.1| hypothetical protein MMAR_1067 ... 400 9e-110
gi|240167741|ref|ZP_04746400.1| hypothetical protein MkanA1_0039... 398 4e-109
gi|15827981|ref|NP_302244.1| hypothetical protein ML1835 [Mycoba... 367 9e-100
gi|41410294|ref|NP_963130.1| hypothetical protein MAP4196 [Mycob... 366 1e-99
gi|296168592|ref|ZP_06850396.1| conserved hypothetical protein [... 365 2e-99
gi|254822303|ref|ZP_05227304.1| hypothetical protein MintA_20379... 364 5e-99
gi|336460632|gb|EGO39523.1| hypothetical protein MAPs_38340 [Myc... 363 9e-99
gi|342861827|ref|ZP_08718472.1| hypothetical protein MCOL_23175 ... 321 7e-86
gi|118467877|ref|YP_890777.1| hypothetical protein MSMEG_6565 [M... 313 1e-83
gi|169629559|ref|YP_001703208.1| hypothetical protein MAB_2473c ... 312 3e-83
gi|262203836|ref|YP_003275044.1| hypothetical protein Gbro_3977 ... 295 4e-78
gi|333991262|ref|YP_004523876.1| hypothetical protein JDM601_262... 292 4e-77
gi|343928252|ref|ZP_08767706.1| hypothetical protein GOALK_111_0... 282 3e-74
gi|326383129|ref|ZP_08204818.1| hypothetical protein SCNU_09331 ... 273 1e-71
gi|108799013|ref|YP_639210.1| hypothetical protein Mmcs_2046 [My... 261 4e-68
gi|145224659|ref|YP_001135337.1| hypothetical protein Mflv_4079 ... 250 1e-64
gi|120403255|ref|YP_953084.1| hypothetical protein Mvan_2264 [My... 228 6e-58
gi|312138187|ref|YP_004005523.1| hypothetical protein REQ_07210 ... 186 3e-45
gi|226304411|ref|YP_002764369.1| hypothetical protein RER_09220 ... 185 5e-45
gi|229494143|ref|ZP_04387906.1| conserved hypothetical protein [... 184 1e-44
gi|111021648|ref|YP_704620.1| hypothetical protein RHA1_ro04676 ... 181 1e-43
gi|226364185|ref|YP_002781967.1| hypothetical protein ROP_47750 ... 176 3e-42
gi|319950800|ref|ZP_08024688.1| hypothetical protein ES5_14393 [... 89.4 4e-16
gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzi... 45.1 0.008
gi|284028854|ref|YP_003378785.1| hypothetical protein Kfla_0881 ... 45.1 0.010
gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vini... 44.7 0.012
gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit... 43.5 0.027
gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta prot... 43.1 0.039
gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta prot... 42.7 0.043
gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfur... 42.7 0.051
gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyras... 42.0 0.084
gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter ca... 41.6 0.095
gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lact... 41.6 0.099
gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A ... 41.6 0.10
gi|332879627|ref|ZP_08447322.1| DNA gyrase, A subunit [Capnocyto... 41.2 0.14
gi|116669031|ref|YP_829964.1| DNA gyrase subunit A [Arthrobacter... 40.4 0.23
gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia n... 40.0 0.31
gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzi... 40.0 0.33
gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit ... 40.0 0.34
gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasm... 39.7 0.37
gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chl... 39.7 0.40
gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplas... 39.3 0.53
gi|340792971|ref|YP_004758434.1| DNA gyrase subunit A [Corynebac... 39.3 0.54
gi|336392839|ref|ZP_08574238.1| DNA topoisomerase IV subunit A [... 39.3 0.54
>gi|15607870|ref|NP_215244.1| hypothetical protein Rv0730 [Mycobacterium tuberculosis H37Rv]
gi|15840137|ref|NP_335174.1| hypothetical protein MT0755 [Mycobacterium tuberculosis CDC1551]
gi|31791916|ref|NP_854409.1| hypothetical protein Mb0751 [Mycobacterium bovis AF2122/97]
67 more sequence titles
Length=242
Score = 486 bits (1251), Expect = 1e-135, Method: Compositional matrix adjust.
Identities = 242/242 (100%), Positives = 242/242 (100%), Gaps = 0/242 (0%)
Query 1 MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN 60
MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN
Sbjct 1 MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN 60
Query 61 LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS 120
LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS
Sbjct 61 LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS 120
Query 121 PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV 180
PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV
Sbjct 121 PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV 180
Query 181 FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSA 240
FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSA
Sbjct 181 FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSA 240
Query 241 GR 242
GR
Sbjct 241 GR 242
>gi|339630799|ref|YP_004722441.1| hypothetical protein MAF_07400 [Mycobacterium africanum GM041182]
gi|339330155|emb|CCC25812.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=242
Score = 484 bits (1246), Expect = 4e-135, Method: Compositional matrix adjust.
Identities = 241/242 (99%), Positives = 242/242 (100%), Gaps = 0/242 (0%)
Query 1 MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN 60
MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN
Sbjct 1 MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN 60
Query 61 LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS 120
LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS
Sbjct 61 LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS 120
Query 121 PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV 180
PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV
Sbjct 121 PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV 180
Query 181 FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSA 240
FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVP+VARAPAAQPAQPGSA
Sbjct 181 FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPVVARAPAAQPAQPGSA 240
Query 241 GR 242
GR
Sbjct 241 GR 242
>gi|340625751|ref|YP_004744203.1| hypothetical protein MCAN_07351 [Mycobacterium canettii CIPT
140010059]
gi|340003941|emb|CCC43075.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=242
Score = 484 bits (1246), Expect = 5e-135, Method: Compositional matrix adjust.
Identities = 241/241 (100%), Positives = 241/241 (100%), Gaps = 0/241 (0%)
Query 1 MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN 60
MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN
Sbjct 1 MHGARTGVSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVN 60
Query 61 LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS 120
LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS
Sbjct 61 LLGTSHLAAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS 120
Query 121 PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV 180
PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV
Sbjct 121 PDEDRDIFARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMV 180
Query 181 FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSA 240
FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSA
Sbjct 181 FGELVHGEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSA 240
Query 241 G 241
G
Sbjct 241 G 241
>gi|254549691|ref|ZP_05140138.1| hypothetical protein Mtube_04380 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|297633229|ref|ZP_06951009.1| hypothetical protein MtubK4_03855 [Mycobacterium tuberculosis
KZN 4207]
gi|297730209|ref|ZP_06959327.1| hypothetical protein MtubKR_03910 [Mycobacterium tuberculosis
KZN R506]
gi|313657536|ref|ZP_07814416.1| hypothetical protein MtubKV_03900 [Mycobacterium tuberculosis
KZN V2475]
Length=235
Score = 470 bits (1209), Expect = 8e-131, Method: Compositional matrix adjust.
Identities = 234/235 (99%), Positives = 235/235 (100%), Gaps = 0/235 (0%)
Query 8 VSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHL 67
+SFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHL
Sbjct 1 MSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHL 60
Query 68 AAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDI 127
AAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDI
Sbjct 61 AAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDI 120
Query 128 FARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHG 187
FARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHG
Sbjct 121 FARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHG 180
Query 188 EVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSAGR 242
EVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSAGR
Sbjct 181 EVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSAGR 235
>gi|167968288|ref|ZP_02550565.1| hypothetical protein MtubH3_09764 [Mycobacterium tuberculosis
H37Ra]
gi|294996212|ref|ZP_06801903.1| hypothetical protein Mtub2_17336 [Mycobacterium tuberculosis
210]
Length=228
Score = 456 bits (1174), Expect = 1e-126, Method: Compositional matrix adjust.
Identities = 228/228 (100%), Positives = 228/228 (100%), Gaps = 0/228 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS
Sbjct 1 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE
Sbjct 61 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW
Sbjct 121 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSAGR 242
IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSAGR
Sbjct 181 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPGSAGR 228
>gi|118616604|ref|YP_904936.1| hypothetical protein MUL_0825 [Mycobacterium ulcerans Agy99]
gi|118568714|gb|ABL03465.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=242
Score = 409 bits (1050), Expect = 2e-112, Method: Compositional matrix adjust.
Identities = 204/227 (90%), Positives = 211/227 (93%), Gaps = 0/227 (0%)
Query 9 SFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLA 68
SFYAYAMTDHD TAARREIADALLAALERRHEVADAIVEA NKAAAVEAIV LL TSHLA
Sbjct 16 SFYAYAMTDHDHTAARREIADALLAALERRHEVADAIVEAENKAAAVEAIVTLLATSHLA 75
Query 69 AEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIF 128
AEAVMSMSF+QLTQDAR KIIAELDDLNKQLSFT+ ERPASSGE LELRPFS EDRDIF
Sbjct 76 AEAVMSMSFEQLTQDARKKIIAELDDLNKQLSFTLTERPASSGESLELRPFSAAEDRDIF 135
Query 129 ARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGE 188
A RTEEMGAAGDGSGGPAG+VDDEI+AA RVDDEEAAWFVA+D+G KVGMVFGELVHGE
Sbjct 136 AARTEEMGAAGDGSGGPAGTVDDEIKAALARVDDEEAAWFVAIDAGEKVGMVFGELVHGE 195
Query 189 VDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPA 235
VDVRIWIHP+HRKKGYGTAALRKSRSEMAWAFPAVPMV R PAA PA
Sbjct 196 VDVRIWIHPEHRKKGYGTAALRKSRSEMAWAFPAVPMVVRIPAANPA 242
>gi|183981087|ref|YP_001849378.1| hypothetical protein MMAR_1067 [Mycobacterium marinum M]
gi|183174413|gb|ACC39523.1| conserved protein [Mycobacterium marinum M]
Length=221
Score = 400 bits (1028), Expect = 9e-110, Method: Compositional matrix adjust.
Identities = 200/221 (91%), Positives = 207/221 (94%), Gaps = 0/221 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTDHD TAARREIADALLAALERRHEVADAIVEA NKAAAVEAIV LLGTSHLAAEAVMS
Sbjct 1 MTDHDHTAARREIADALLAALERRHEVADAIVEAENKAAAVEAIVTLLGTSHLAAEAVMS 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSF+QLTQDAR KIIAELDDLNKQLSFT+ ERPASSGE LELRPFS EDRDIFA RTEE
Sbjct 61 MSFEQLTQDARKKIIAELDDLNKQLSFTLTERPASSGESLELRPFSAAEDRDIFAARTEE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
MGAAGDGSGGPAG+VDDEI+AA RVDDEEAAWFVA+D+G KVGMVFGELVHGEVDVRIW
Sbjct 121 MGAAGDGSGGPAGTVDDEIKAALARVDDEEAAWFVAIDAGEKVGMVFGELVHGEVDVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPA 235
IHP+HRKKGYGTAALRKSRSEMAWAFPAVPMV RAPAA PA
Sbjct 181 IHPEHRKKGYGTAALRKSRSEMAWAFPAVPMVVRAPAANPA 221
>gi|240167741|ref|ZP_04746400.1| hypothetical protein MkanA1_00395 [Mycobacterium kansasii ATCC
12478]
Length=228
Score = 398 bits (1022), Expect = 4e-109, Method: Compositional matrix adjust.
Identities = 198/228 (87%), Positives = 210/228 (93%), Gaps = 0/228 (0%)
Query 8 VSFYAYAMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHL 67
+SFYA AMTDHDQTA RREIADALLAALERRHEVADAIV+A NKAAAVEAIV LLGTSH+
Sbjct 1 MSFYANAMTDHDQTAVRREIADALLAALERRHEVADAIVDAQNKAAAVEAIVTLLGTSHV 60
Query 68 AAEAVMSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDI 127
AAEAVMSMSFDQLTQDAR KI+ ELDDLNKQL+F K+RPAS GE LELRPFS DEDRDI
Sbjct 61 AAEAVMSMSFDQLTQDARKKILDELDDLNKQLTFAAKDRPASFGESLELRPFSADEDRDI 120
Query 128 FARRTEEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHG 187
FA RTEEMGAAGDGSGGPAG++DDEI+AA RVDDEEAAWFVAVDSG KVGMVFGEL+HG
Sbjct 121 FAARTEEMGAAGDGSGGPAGNLDDEIKAAICRVDDEEAAWFVAVDSGEKVGMVFGELLHG 180
Query 188 EVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPA 235
EV+VRIWI P+HRKKGYGTAALRKSRSEMAWAFPAVPMV RAPAA PA
Sbjct 181 EVNVRIWIRPEHRKKGYGTAALRKSRSEMAWAFPAVPMVVRAPAAHPA 228
>gi|15827981|ref|NP_302244.1| hypothetical protein ML1835 [Mycobacterium leprae TN]
gi|221230458|ref|YP_002503874.1| hypothetical protein MLBr_01835 [Mycobacterium leprae Br4923]
gi|2344856|emb|CAB11458.1| hypothetical protein [Mycobacterium leprae]
gi|13093534|emb|CAC30789.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933565|emb|CAR71931.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=227
Score = 367 bits (941), Expect = 9e-100, Method: Compositional matrix adjust.
Identities = 182/218 (84%), Positives = 198/218 (91%), Gaps = 0/218 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTDHDQTAARRE ADALL ALERRHE+ADA+VEA NK AAVEAIV LL TS LAAEAVMS
Sbjct 1 MTDHDQTAARRETADALLKALERRHEIADAVVEAENKPAAVEAIVKLLDTSRLAAEAVMS 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSFD+LT+D+R KI+AEL+DLNKQLSFT++ERPAS GE LELRPFS ++DRDIFA RT E
Sbjct 61 MSFDRLTKDSRKKILAELEDLNKQLSFTLQERPASLGESLELRPFSGEDDRDIFAARTAE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
+ +AGDGSGGPAGS+DDEIRAA RV DEEAAWFVAVDSG KVGMVFGELVHGEVDVR+W
Sbjct 121 INSAGDGSGGPAGSIDDEIRAALVRVADEEAAWFVAVDSGAKVGMVFGELVHGEVDVRVW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
I PDHRKKGYGTAALRKSRSEMA+ FPAVPMVARAPAA
Sbjct 181 ICPDHRKKGYGTAALRKSRSEMAYCFPAVPMVARAPAA 218
>gi|41410294|ref|NP_963130.1| hypothetical protein MAP4196 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464855|ref|YP_883571.1| hypothetical protein MAV_4436 [Mycobacterium avium 104]
gi|41399128|gb|AAS06746.1| hypothetical protein MAP_4196 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166142|gb|ABK67039.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=221
Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/221 (82%), Positives = 199/221 (91%), Gaps = 0/221 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTD D+ AARREIADALL ALERRHE+AD +VE+ NKAAAVEAIV LL TSHLAAEAVM
Sbjct 1 MTDQDRKAARREIADALLKALERRHEIADVVVESENKAAAVEAIVRLLDTSHLAAEAVMG 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSFDQLT D+R KI+AEL+DLNKQLSFTV ERPASSGE LELRPFS EDRDIFA RT++
Sbjct 61 MSFDQLTIDSRRKILAELEDLNKQLSFTVGERPASSGETLELRPFSATEDRDIFAARTQD 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
MG+AGDGSGGPAG +DDEIRAA R+DDEEAAWFVAVDSG KVGMVFGEL++GEV+VRIW
Sbjct 121 MGSAGDGSGGPAGDLDDEIRAATARLDDEEAAWFVAVDSGQKVGMVFGELLNGEVNVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPA 235
IHPD RK+GYGTAALRKSR+EMAW FPAVP+V RAPAA+PA
Sbjct 181 IHPDFRKRGYGTAALRKSRTEMAWCFPAVPLVVRAPAAKPA 221
>gi|296168592|ref|ZP_06850396.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896655|gb|EFG76294.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=221
Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/221 (82%), Positives = 200/221 (91%), Gaps = 0/221 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTDHD+ AARREIADALL ALERRHE+AD +VE+ NKAAAVEAIV LL TSH+AAEAVM
Sbjct 1 MTDHDRKAARREIADALLKALERRHEIADVVVESENKAAAVEAIVRLLDTSHVAAEAVMG 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSFDQLT D+R KI+AEL+DLNKQLSFT+ ERPASSGE LELRPFS + DRDIFA RTE+
Sbjct 61 MSFDQLTIDSRRKILAELEDLNKQLSFTLGERPASSGETLELRPFSAERDRDIFAARTED 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
MGAAGDGSGGPAG++DDEI AA R+DDEEAAWFVAVDSG KVGMVFGEL+ GEV+VRIW
Sbjct 121 MGAAGDGSGGPAGNLDDEIGAALGRLDDEEAAWFVAVDSGEKVGMVFGELLGGEVNVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPA 235
IHP+HRKKGYGTAALRKSR+EMAW FPAVPMV RAPAA+PA
Sbjct 181 IHPEHRKKGYGTAALRKSRTEMAWCFPAVPMVVRAPAARPA 221
>gi|254822303|ref|ZP_05227304.1| hypothetical protein MintA_20379 [Mycobacterium intracellulare
ATCC 13950]
Length=222
Score = 364 bits (935), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 184/224 (83%), Positives = 199/224 (89%), Gaps = 2/224 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTDHD+ A RREIADAL A+ERRHE+ADAIVE+ N+AAAVEAIV LL TSHLAAEAVM
Sbjct 1 MTDHDRKATRREIADALSKAVERRHEIADAIVESENRAAAVEAIVRLLDTSHLAAEAVMG 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSFDQLT D+R KI+AEL+DLNKQLSFT+ ERPASSGE LELRPFS DRDIFA RTEE
Sbjct 61 MSFDQLTIDSRRKILAELEDLNKQLSFTLGERPASSGETLELRPFSAATDRDIFAVRTEE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
+GAAGDGSGGPAGS+DDEI AA RVDDEEAAWFVAVDSG KVGMVFGELV GEV+VRIW
Sbjct 121 IGAAGDGSGGPAGSLDDEISAALGRVDDEEAAWFVAVDSGQKVGMVFGELVRGEVNVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPAQPG 238
IHPD+RK+GYGTAALRKSRSEMAW FPAVPMV RAPAA+P PG
Sbjct 181 IHPDYRKRGYGTAALRKSRSEMAWCFPAVPMVVRAPAAKP--PG 222
>gi|336460632|gb|EGO39523.1| hypothetical protein MAPs_38340 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=221
Score = 363 bits (933), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 179/221 (81%), Positives = 198/221 (90%), Gaps = 0/221 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTD D+ AARREIADALL ALERRHE+AD +VE+ NKAAAVEAIV LL TSHLAAEAVM
Sbjct 1 MTDQDRKAARREIADALLKALERRHEIADVVVESENKAAAVEAIVRLLDTSHLAAEAVMG 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSFDQ T D+R KI+AEL+DLNKQLSFTV ERPASSGE LELRPFS EDRDIFA RT++
Sbjct 61 MSFDQRTIDSRRKILAELEDLNKQLSFTVGERPASSGETLELRPFSATEDRDIFAARTQD 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
MG+AGDGSGGPAG +DDEIRAA R+DDEEAAWFVAVDSG KVGMVFGEL++GEV+VRIW
Sbjct 121 MGSAGDGSGGPAGDLDDEIRAATARLDDEEAAWFVAVDSGQKVGMVFGELLNGEVNVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQPA 235
IHPD RK+GYGTAALRKSR+EMAW FPAVP+V RAPAA+PA
Sbjct 181 IHPDFRKRGYGTAALRKSRTEMAWCFPAVPLVVRAPAAKPA 221
>gi|342861827|ref|ZP_08718472.1| hypothetical protein MCOL_23175 [Mycobacterium colombiense CECT
3035]
gi|342130644|gb|EGT83948.1| hypothetical protein MCOL_23175 [Mycobacterium colombiense CECT
3035]
Length=222
Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 166/221 (76%), Positives = 183/221 (83%), Gaps = 1/221 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTD D+ AARREIADALL ALERRHEV D IVEA NK+ AV+AI LLGTS+ AEAV
Sbjct 1 MTDQDRKAARREIADALLKALERRHEVLDLIVEAGNKSEAVKAIAGLLGTSNTGAEAVFG 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
+SFD+LT+D+R I AEL+DLNKQLSFT+ ERPASSG+ LELRPFS EDRDIF RT +
Sbjct 61 LSFDRLTKDSRKTIQAELEDLNKQLSFTLGERPASSGDTLELRPFSASEDRDIFGVRTAD 120
Query 135 MGAAGDGSGGP-AGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRI 193
MG A G AG++DDEIRAA RVDDEEAAWFVA+D+G KVGMVFGELV GEVDVRI
Sbjct 121 MGGASGDGSGGRAGNLDDEIRAALGRVDDEEAAWFVAIDNGEKVGMVFGELVRGEVDVRI 180
Query 194 WIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQP 234
WIHPDHRK+GYGTAALRKSRSEMAW FPAVPMV RAPAA P
Sbjct 181 WIHPDHRKRGYGTAALRKSRSEMAWCFPAVPMVVRAPAANP 221
>gi|118467877|ref|YP_890777.1| hypothetical protein MSMEG_6565 [Mycobacterium smegmatis str.
MC2 155]
gi|118169164|gb|ABK70060.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=229
Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 154/220 (70%), Positives = 184/220 (84%), Gaps = 0/220 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTD D+ AARR+I DALL+AL RRHEV D IV+A ++ AA++ + NLLGTS AAEAV+
Sbjct 8 MTDPDKAAARRDITDALLSALNRRHEVLDVIVDAEDRNAAIDNVANLLGTSRTAAEAVIG 67
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
+SF Q+T+++R +I AELDDLN QLSFT++ERPAS+G+ LELRPFS +DRDIFA RT +
Sbjct 68 LSFAQITKESRRQIAAELDDLNSQLSFTLQERPASAGDTLELRPFSATDDRDIFAARTSD 127
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
+GA+GDGSG PA +D+EIRAA +RVD EEAAWFVAV+ G KVGMVFGELV GEV+VRIW
Sbjct 128 VGASGDGSGAPAADLDEEIRAALRRVDAEEAAWFVAVEGGQKVGMVFGELVSGEVNVRIW 187
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQP 234
IHPD RK+GYGTAALRKSRSEMA FPAVPMV RAP A P
Sbjct 188 IHPDFRKRGYGTAALRKSRSEMASYFPAVPMVVRAPGAVP 227
>gi|169629559|ref|YP_001703208.1| hypothetical protein MAB_2473c [Mycobacterium abscessus ATCC
19977]
gi|169241526|emb|CAM62554.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=221
Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/216 (72%), Positives = 178/216 (83%), Gaps = 0/216 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTDHD+ A RREIADAL +A ERRHEV D IVEA ++ +A++AI LLGTSHL EAVM
Sbjct 1 MTDHDRLATRREIADALTSAFERRHEVLDLIVEADDRKSAIDAIATLLGTSHLGGEAVMG 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSFD+LT+D R K AEL+DLN QL+FT+ ERPASSG+ LELRPFS D DIFA RTEE
Sbjct 61 MSFDKLTKDERRKNAAELEDLNSQLTFTLMERPASSGDTLELRPFSGSSDADIFAVRTEE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
+G AGDGSG PAG ++DE++AA R+DDEEAAWFVAV+ KVG+VFGELV GEV+VRIW
Sbjct 121 VGQAGDGSGAPAGVLEDELQAALARIDDEEAAWFVAVEGPSKVGIVFGELVDGEVNVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAP 230
+HPDHRKKGYGTAALRKSRS MA FPAVPMV RAP
Sbjct 181 VHPDHRKKGYGTAALRKSRSVMAAYFPAVPMVVRAP 216
>gi|262203836|ref|YP_003275044.1| hypothetical protein Gbro_3977 [Gordonia bronchialis DSM 43247]
gi|262087183|gb|ACY23151.1| hypothetical protein Gbro_3977 [Gordonia bronchialis DSM 43247]
Length=218
Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/218 (69%), Positives = 164/218 (76%), Gaps = 0/218 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTD DQ RR+IADALL ALERRHEV DAIV+A N AV AIV+LLG S L A A++
Sbjct 1 MTDLDQATTRRDIADALLTALERRHEVLDAIVDAENHDEAVAAIVDLLGKSQLGARAILD 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
M DQLT+D R K AELDDLN L+FT+ ERPASSG+ LELRPFS D D D+F RTEE
Sbjct 61 MKLDQLTKDERRKNQAELDDLNSALTFTLSERPASSGDNLELRPFSSDADADLFKVRTEE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
+G AGDGSG PAG + DEI A RVD+EEA W VA + KVG VFGEL GEVDVRIW
Sbjct 121 LGVAGDGSGRPAGDLSDEITKATSRVDNEEAVWLVAEEGSAKVGFVFGELTDGEVDVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
IHP+HRK GYGTAALRKSRSEMA FP VPMV RAP A
Sbjct 181 IHPEHRKHGYGTAALRKSRSEMAAYFPGVPMVVRAPGA 218
>gi|333991262|ref|YP_004523876.1| hypothetical protein JDM601_2622 [Mycobacterium sp. JDM601]
gi|333487230|gb|AEF36622.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=223
Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/219 (65%), Positives = 176/219 (81%), Gaps = 0/219 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MT D+ +RREI DALL A+ERRHEV D IV++ ++A+AV+AI NLLGTS EAV+
Sbjct 1 MTAVDRAVSRREITDALLKAMERRHEVLDVIVDSDDRASAVQAIANLLGTSPAGCEAVIG 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MS DQLT+D+R++I AELDDLN +L+FT+ +RPASSGE L LRPF+ + DRDIF RT +
Sbjct 61 MSLDQLTKDSRSRIAAELDDLNNELTFTLGDRPASSGETLLLRPFAGEPDRDIFELRTTD 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
+GA+GDGSG PAG +DDEIR+A RVDDE+AA FVA+D KVGMVFG+L GEV+VRIW
Sbjct 121 VGASGDGSGAPAGGLDDEIRSALSRVDDEDAALFVAIDGAQKVGMVFGDLNRGEVNVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAAQ 233
I P+HRKKGYGTAALR++R+EMA FP VP+V RAP A
Sbjct 181 IQPEHRKKGYGTAALRRARTEMAAYFPGVPLVVRAPGAH 219
>gi|343928252|ref|ZP_08767706.1| hypothetical protein GOALK_111_00210 [Gordonia alkanivorans NBRC
16433]
gi|343761846|dbj|GAA14632.1| hypothetical protein GOALK_111_00210 [Gordonia alkanivorans NBRC
16433]
Length=218
Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/218 (67%), Positives = 163/218 (75%), Gaps = 0/218 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTD D RR+IADALL ALERRHEV DAIV+A N AV AIV LLG S L A+A++
Sbjct 1 MTDLDLATTRRDIADALLTALERRHEVLDAIVDAENHDEAVTAIVELLGKSQLGAKAILD 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
M +QLT+D R K AELDDLN L+FT+ ERPASSG+ L+LRPF P D ++FA RT+E
Sbjct 61 MKLNQLTKDERRKNQAELDDLNNALTFTLVERPASSGDTLDLRPFDPQADAELFAARTDE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
+G AGDGSG PAG V EI AA RVD EEA W VAV+ KVG VFGEL +GEVD+RIW
Sbjct 121 LGTAGDGSGAPAGDVAAEISAATDRVDAEEAVWLVAVEGDSKVGFVFGELKNGEVDLRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
IHP +RK GYGTAALRKSRSEMA FP VPMV RAP A
Sbjct 181 IHPQYRKSGYGTAALRKSRSEMAAYFPGVPMVVRAPGA 218
>gi|326383129|ref|ZP_08204818.1| hypothetical protein SCNU_09331 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198265|gb|EGD55450.1| hypothetical protein SCNU_09331 [Gordonia neofelifaecis NRRL
B-59395]
Length=218
Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/218 (64%), Positives = 164/218 (76%), Gaps = 0/218 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MTD DQTA RR+I DALL A+ERRHEV DAIV+A ++ AA AI +LLG S L AE +++
Sbjct 1 MTDLDQTATRRDITDALLTAMERRHEVLDAIVDAEDRDAAANAIADLLGKSKLGAETILN 60
Query 75 MSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEE 134
MSF QLT+ R AELD+LN+ ++FT+ ERPASSG+ L+LRPFS D+D D+FA RT E
Sbjct 61 MSFYQLTKAERRNNQAELDNLNEAITFTLAERPASSGDTLDLRPFSADQDADLFAERTAE 120
Query 135 MGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIW 194
G AGDGSG PAG V EI RVD E+A W VA++ K+G+VFGEL GEVDVRIW
Sbjct 121 QGVAGDGSGAPAGDVASEIAKGVDRVDAEDAVWLVALEGDQKIGIVFGELTGGEVDVRIW 180
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
I P RK+GYGTAALRKSRSEMA FP VPMV RAP+A
Sbjct 181 IRPTARKQGYGTAALRKSRSEMAALFPGVPMVVRAPSA 218
>gi|108799013|ref|YP_639210.1| hypothetical protein Mmcs_2046 [Mycobacterium sp. MCS]
gi|119868128|ref|YP_938080.1| hypothetical protein Mkms_2092 [Mycobacterium sp. KMS]
gi|126434616|ref|YP_001070307.1| hypothetical protein Mjls_2029 [Mycobacterium sp. JLS]
gi|108769432|gb|ABG08154.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119694217|gb|ABL91290.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126234416|gb|ABN97816.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=222
Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/216 (63%), Positives = 163/216 (76%), Gaps = 0/216 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
DHD+ RREIADAL+ ALERRHEV D IV + + AA+E + LLGTS EAV+ +S
Sbjct 5 DHDRRIDRREIADALMRALERRHEVLDVIVASEDYDAAIEEVAALLGTSAAGGEAVLRLS 64
Query 77 FDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTEEMG 136
FD+LT+ +R +I AEL+DLN QLSFT+ E+ + E + LRPFS EDRD+FA RT ++
Sbjct 65 FDRLTKVSRRRIAAELEDLNNQLSFTMGEQSSRPVERVVLRPFSAAEDRDVFAARTADVR 124
Query 137 AAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIWIH 196
AAGDGSG PAG++DDEI AA RV+ EEA W VA K+GMVFGEL GEV+VRIWIH
Sbjct 125 AAGDGSGAPAGALDDEISAAVGRVNAEEAVWLVATVGADKIGMVFGELSGGEVNVRIWIH 184
Query 197 PDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
P+HRK+GYGTA LR SRSEMA FPAVP+V RAPAA
Sbjct 185 PEHRKRGYGTATLRASRSEMAAYFPAVPLVVRAPAA 220
>gi|145224659|ref|YP_001135337.1| hypothetical protein Mflv_4079 [Mycobacterium gilvum PYR-GCK]
gi|315444989|ref|YP_004077868.1| hypothetical protein Mspyr1_34220 [Mycobacterium sp. Spyr1]
gi|145217145|gb|ABP46549.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315263292|gb|ADU00034.1| hypothetical protein Mspyr1_34220 [Mycobacterium sp. Spyr1]
Length=220
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/219 (60%), Positives = 162/219 (74%), Gaps = 1/219 (0%)
Query 15 MTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
MT+HD TA RREIADA++ AL+RRHE+ DA+V + + AA+EAI +LL S A+EAV+
Sbjct 1 MTEHDSTATRREIADAMMKALDRRHELLDAVVASEDYDAAIEAIADLLDASAEASEAVLR 60
Query 75 MSFDQLTQDARTKIIAELDDLN-KQLSFTVKERPASSGEGLELRPFSPDEDRDIFARRTE 133
+SFD+LT+ +R +I AEL++LN K L+F E+ S L LRPFS +DRD+FA RT
Sbjct 61 LSFDRLTKVSRRRIAAELENLNSKVLTFASSEQTPGSARRLMLRPFSAADDRDVFAERTA 120
Query 134 EMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRI 193
++ +AGDG+ PAG + DEIRAA R+ EEA W VA KVGMVFGEL GEVDVRI
Sbjct 121 DVRSAGDGTAAPAGDLGDEIRAAVTRMAAEEAVWLVAEVGSTKVGMVFGELADGEVDVRI 180
Query 194 WIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
WIHP HRK G+GTAALR SRSEMA FPAVP+V RAPAA
Sbjct 181 WIHPAHRKHGFGTAALRASRSEMAAYFPAVPLVVRAPAA 219
>gi|120403255|ref|YP_953084.1| hypothetical protein Mvan_2264 [Mycobacterium vanbaalenii PYR-1]
gi|119956073|gb|ABM13078.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=240
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/213 (62%), Positives = 158/213 (75%), Gaps = 1/213 (0%)
Query 21 TAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQL 80
TAA RE+A AL+ ALERRHEV DA+V + + AA+E++ LL TS AAEAV+ +SFD+L
Sbjct 26 TAASREMATALVHALERRHEVLDAVVASDDYDAAIESLAELLDTSAEAAEAVLRLSFDRL 85
Query 81 TQDARTKIIAELDDLNKQL-SFTVKERPASSGEGLELRPFSPDEDRDIFARRTEEMGAAG 139
T+ +R +I AEL+DLN + ++T E+ S L LRPF+ D+DRDIFA RTE+M +AG
Sbjct 86 TKVSRRRIAAELEDLNSRAQNYTPPEQTPGSARRLLLRPFAADQDRDIFAARTEDMRSAG 145
Query 140 DGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDSGVKVGMVFGELVHGEVDVRIWIHPDH 199
DG+ PAG + DEI AA RV EEAAW VA KVGMVFG+L GEV VRIWIHP H
Sbjct 146 DGTAAPAGDLGDEIAAAVARVAAEEAAWLVAEVGSAKVGMVFGDLADGEVGVRIWIHPSH 205
Query 200 RKKGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
RK+GYGTAALR SRSEMA FPAVP+V RAPAA
Sbjct 206 RKQGYGTAALRASRSEMAAYFPAVPLVVRAPAA 238
>gi|312138187|ref|YP_004005523.1| hypothetical protein REQ_07210 [Rhodococcus equi 103S]
gi|325674908|ref|ZP_08154595.1| hypothetical protein HMPREF0724_12377 [Rhodococcus equi ATCC
33707]
gi|311887526|emb|CBH46838.1| conserved hypothetical protein [Rhodococcus equi 103S]
gi|325554494|gb|EGD24169.1| hypothetical protein HMPREF0724_12377 [Rhodococcus equi ATCC
33707]
Length=223
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/225 (50%), Positives = 149/225 (67%), Gaps = 10/225 (4%)
Query 14 AMTDHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVM 73
+ +HDQ RREIA ALL AL+RRHEV DAIVE+ ++AAAV A+ +LL TS AEAV+
Sbjct 2 TVKNHDQVIDRREIASALLKALDRRHEVLDAIVESNDRAAAVAAVRDLLDTSDFCAEAVL 61
Query 74 SMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS-PDEDRDIFARRT 132
+ FD+LT R +I EL+DL+ L + ++RP S+G G+ LRPFS D+D +F +R+
Sbjct 62 GLRFDRLTVKERDRIRTELEDLDATLQWLPEQRPYSTGAGVRLRPFSDSDDDAALFRKRS 121
Query 133 EEMGAAGDGSGGPAGS--VDDEIRAAQKRVDDEEAAWFVAV----DSGVKVGMVFGELVH 186
E D SG P V+ E + KR+DDE AAWFVA D+ VG++FGEL
Sbjct 122 TEQ---FDESGKPWDDERVERERQHGLKRIDDESAAWFVAECTTGDAPNGVGLIFGELTG 178
Query 187 GEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPA 231
EVDV IW+ P+ RK+GYGTAAL+++RSE+A FP ++ R PA
Sbjct 179 NEVDVAIWVAPESRKQGYGTAALKQARSELAAYFPGTVLIVRTPA 223
>gi|226304411|ref|YP_002764369.1| hypothetical protein RER_09220 [Rhodococcus erythropolis PR4]
gi|226183526|dbj|BAH31630.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=223
Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/225 (49%), Positives = 142/225 (64%), Gaps = 10/225 (4%)
Query 15 MTDH--DQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAV 72
MT H DQ RREI AL+ ALERRHEV DA+V++ + A+ + LLGTS AEAV
Sbjct 1 MTTHIQDQILDRREITSALVRALERRHEVLDAVVDSKDHQEALTTVAELLGTSEANAEAV 60
Query 73 MSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPD-EDRDIFARR 131
+S+ F LT+ AR +I EL++L+ L +T +RPASSG+ LRPFS ED+ +F R
Sbjct 61 LSLKFSALTKAARDRIQGELENLDATLEWTTLDRPASSGQNFTLRPFSDSAEDKSLFTIR 120
Query 132 T-EEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVD---SGVK-VGMVFGELVH 186
+ E++G DG ++ E R+DDE AAWFVA D G K VG+VFGEL
Sbjct 121 SGEQLGE--DGKPWSEDRIEAERVGGLGRIDDETAAWFVAEDVSGDGSKSVGLVFGELDG 178
Query 187 GEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPA 231
EV+V IWI P+ RKKGYGTA ++ SR E+A FP +V RAPA
Sbjct 179 QEVNVAIWIAPESRKKGYGTACVKHSRRELAAEFPGTVLVVRAPA 223
>gi|229494143|ref|ZP_04387906.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229318505|gb|EEN84363.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=223
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/225 (49%), Positives = 142/225 (64%), Gaps = 10/225 (4%)
Query 15 MTDH--DQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAV 72
MT H DQ RREI AL+ ALERRHEV DA+V++ + A+ + LLGTS AEAV
Sbjct 1 MTTHIQDQILDRREITSALVRALERRHEVLDAVVDSKDHQEALTTVAELLGTSEANAEAV 60
Query 73 MSMSFDQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPD-EDRDIFARR 131
+S+ F LT+ AR +I EL++L+ L +T +RPASSG+ LRPFS ED+ +F R
Sbjct 61 LSLKFSALTKAARDRIQGELENLDATLEWTTLDRPASSGQNFTLRPFSDSAEDKALFTIR 120
Query 132 T-EEMGAAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVD---SGVK-VGMVFGELVH 186
+ E++G DG ++ E R+DDE AAWFVA D G K VG+VFGEL
Sbjct 121 SAEQLGE--DGKPWSEDRIEAERVGGLGRIDDESAAWFVAEDVSGDGPKSVGLVFGELDG 178
Query 187 GEVDVRIWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPA 231
EV+V IWI P+ RKKGYGTA ++ SR E+A FP +V RAPA
Sbjct 179 QEVNVAIWIAPESRKKGYGTACVKHSRRELAAEFPGTVLVVRAPA 223
>gi|111021648|ref|YP_704620.1| hypothetical protein RHA1_ro04676 [Rhodococcus jostii RHA1]
gi|110821178|gb|ABG96462.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=221
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/219 (48%), Positives = 135/219 (62%), Gaps = 8/219 (3%)
Query 18 HDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSF 77
D+ RRE+ LL ALE+RHEV DAIV++ + A A+ + LL TS AEAV++++F
Sbjct 6 QDRIHDRRELTAVLLRALEQRHEVLDAIVDSEDHAEALTTVAGLLDTSEAYAEAVLNLTF 65
Query 78 DQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS-PDEDRDIFARRTEEMG 136
+LT+ R +I EL DL+ L +T +RPAS+G LRPF+ +ED ++F RR G
Sbjct 66 RRLTKVERLRIQTELKDLDATLEWTSTDRPASTGRNFRLRPFTDTEEDAELFRRR---CG 122
Query 137 AAGDGSGGPAGS--VDDEIRAAQKRVDDEEAAWFVAVDS--GVKVGMVFGELVHGEVDVR 192
D +G V+ E RVDDE AAWFV D+ VGMVFGEL EVDV
Sbjct 123 EQVDDAGAQWSEDRVEKERTEGLSRVDDESAAWFVCEDTAENTAVGMVFGELSGREVDVA 182
Query 193 IWIHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPA 231
IWI PD RKKGYGTAA++ SR E+A FP +V RAPA
Sbjct 183 IWIAPDARKKGYGTAAVKHSRQELAAEFPGTVLVVRAPA 221
>gi|226364185|ref|YP_002781967.1| hypothetical protein ROP_47750 [Rhodococcus opacus B4]
gi|226242674|dbj|BAH53022.1| hypothetical protein [Rhodococcus opacus B4]
Length=221
Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/217 (48%), Positives = 132/217 (61%), Gaps = 4/217 (1%)
Query 18 HDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSF 77
D+ RRE+ LL ALE+RH V DAIV++ + A A+ + LL T+ AEAV++++F
Sbjct 6 QDRIHDRRELTAVLLRALEQRHAVLDAIVDSEDHAEALTTVAGLLDTTEAYAEAVLNLTF 65
Query 78 DQLTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLELRPFS-PDEDRDIFARRTEEMG 136
+LT+ R +I EL DL+ L +T +RPAS+G LRPF+ +ED +F RR E
Sbjct 66 RRLTKVERLRIQTELKDLDATLEWTASDRPASTGRNFRLRPFTQTEEDAALFRRRCVEQ- 124
Query 137 AAGDGSGGPAGSVDDEIRAAQKRVDDEEAAWFVAVDS--GVKVGMVFGELVHGEVDVRIW 194
G+ V+ E RVDDE AAWFV D+ VGMVFGEL EVDV IW
Sbjct 125 VDDAGAQWSEERVEKERAEGLSRVDDESAAWFVCEDTEANTAVGMVFGELSGREVDVAIW 184
Query 195 IHPDHRKKGYGTAALRKSRSEMAWAFPAVPMVARAPA 231
I PD RKKGYGTAA++ SR E+A FP +V RAPA
Sbjct 185 ISPDARKKGYGTAAVKHSRQELAAEFPGTVLVVRAPA 221
>gi|319950800|ref|ZP_08024688.1| hypothetical protein ES5_14393 [Dietzia cinnamea P4]
gi|319435557|gb|EFV90789.1| hypothetical protein ES5_14393 [Dietzia cinnamea P4]
Length=194
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/211 (32%), Positives = 100/211 (48%), Gaps = 25/211 (11%)
Query 27 IADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQLTQDART 86
++D + A RR E+ A+ A AV A+ +LL S A V+ +
Sbjct 1 MSDVIEMAASRRREIFAAVSSADGPEDAVGAVASLLSVSADEAGEVLRAPLEAFAGSPSG 60
Query 87 KIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIF--ARRTEEMGAAGDGSGG 144
+G+G LRPF+ E+ AR ++E A G
Sbjct 61 GPAG------------------GAGQGFTLRPFTESEEHTSLYHARSSDETSATG--GTW 100
Query 145 PAGSVDDEIRAAQKRVDDEEAAWFVAVDSG--VKVGMVFGELV-HGEVDVRIWIHPDHRK 201
+ E+R R++ E A WFVAVD+ +G+VFGE + +G+VDV IWI P+ RK
Sbjct 101 DREKTEQELRNGLDRIEAESAMWFVAVDTDRDAPIGLVFGEQIDNGDVDVAIWIRPEERK 160
Query 202 KGYGTAALRKSRSEMAWAFPAVPMVARAPAA 232
KG+G +L++SR E+A FP ++ RAP A
Sbjct 161 KGFGLRSLKESRRELAAFFPGKHLIVRAPMA 191
>gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus amylolyticus
DSM 11664]
gi|295064004|gb|EFG54952.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus amylolyticus
DSM 11664]
Length=824
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 27/84 (33%), Positives = 46/84 (55%), Gaps = 0/84 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D D+ AR EI L+ A++ +V I + NKA A + ++ + AEA++S+
Sbjct 367 DLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIKEFKFTERQAEAIVSLQ 426
Query 77 FDQLTQDARTKIIAELDDLNKQLS 100
+LT +IAE +DLNK+++
Sbjct 427 LYRLTNTDVDALIAEQNDLNKKVA 450
>gi|284028854|ref|YP_003378785.1| hypothetical protein Kfla_0881 [Kribbella flavida DSM 17836]
gi|283808147|gb|ADB29986.1| hypothetical protein Kfla_0881 [Kribbella flavida DSM 17836]
Length=130
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/75 (38%), Positives = 41/75 (55%), Gaps = 0/75 (0%)
Query 26 EIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQLTQDAR 85
EI DA+L+A +RR EV D I A+++ AV I LL S A A++ + + T R
Sbjct 55 EIYDAVLSAFDRRTEVLDTIAAASDRETAVLRIRALLDVSPGQAGAIVDLPLHRFTSGTR 114
Query 86 TKIIAELDDLNKQLS 100
+I D+L + LS
Sbjct 115 DRIRDRADELRRALS 129
>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
Length=823
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 29/97 (30%), Positives = 49/97 (51%), Gaps = 1/97 (1%)
Query 20 QTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQ 79
Q RR I + ++ L+ V I EA + A A + N G S AEA++ +S +
Sbjct 344 QAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQAEAILDISLRR 403
Query 80 LTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLEL 116
+T+ R K + E L +Q+S ++E +S + L+L
Sbjct 404 ITRLEREKFVTESKSLMEQIS-KLQELLSSRKQILQL 439
>gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit [Lactobacillus crispatus ST1]
gi|295031115|emb|CBL50594.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus ST1]
Length=818
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 27/81 (34%), Positives = 43/81 (54%), Gaps = 0/81 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D D+ AR EI L+ A++ +V I + NKA A + ++ + AEA++S+
Sbjct 367 DLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAEAIVSLQ 426
Query 77 FDQLTQDARTKIIAELDDLNK 97
+LT ++IAE D LNK
Sbjct 427 LYRLTNTDVNELIAEQDKLNK 447
>gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
Length=850
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/90 (33%), Positives = 44/90 (49%), Gaps = 2/90 (2%)
Query 12 AYAMTDHDQTAARRE--IADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAA 69
Y T +D A + + + L A+ EV I +AN A E ++N G S + A
Sbjct 368 VYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFGLSAIQA 427
Query 70 EAVMSMSFDQLTQDARTKIIAELDDLNKQL 99
+A++ M +LT R KII E D L K++
Sbjct 428 QAILEMRLHRLTGLEREKIIEEYDALMKEI 457
>gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
Length=850
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/90 (33%), Positives = 44/90 (49%), Gaps = 2/90 (2%)
Query 12 AYAMTDHDQTAARRE--IADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAA 69
Y T +D A + + + L A+ EV I +AN A E ++N G S + A
Sbjct 368 VYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFGLSAIQA 427
Query 70 EAVMSMSFDQLTQDARTKIIAELDDLNKQL 99
+A++ M +LT R KII E D L K++
Sbjct 428 QAILEMRLHRLTGLEREKIIEEYDALMKEI 457
>gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
Length=837
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/92 (32%), Positives = 44/92 (48%), Gaps = 2/92 (2%)
Query 12 AYAMTDHDQTAARRE--IADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAA 69
Y T HD A + I + L A+ EV + I +AN A E ++N S + A
Sbjct 363 VYRRTAHDLRKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINRFALSAIQA 422
Query 70 EAVMSMSFDQLTQDARTKIIAELDDLNKQLSF 101
+A++ M +LT R KII E L K++ +
Sbjct 423 QAILEMRLHRLTGLEREKIIEEYQALMKEIEW 454
>gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial
[Vitis vinifera]
Length=911
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/97 (30%), Positives = 49/97 (51%), Gaps = 1/97 (1%)
Query 20 QTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQ 79
Q RR I + ++ L+ V I EA + A A + N G S AEA++ +S +
Sbjct 432 QAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQAEAILDISLRR 491
Query 80 LTQDARTKIIAELDDLNKQLSFTVKERPASSGEGLEL 116
+T+ R K + E L +Q+S ++E +S + L+L
Sbjct 492 ITRLEREKFVTESKSLMEQIS-KLQELLSSRKQILQL 527
>gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
Length=835
Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/118 (33%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query 27 IADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQLTQDART 86
I + ALE EV I ++AN A + ++ S + A+A++ M +LT R
Sbjct 378 ILEGFKIALENLDEVIAIIKQSANPREAKQRLMERFALSEIQAQAILDMRLHRLTGMERD 437
Query 87 KIIAELDDLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFA--RRTEEMGAAGDGS 142
KI+AE ++ ++ +KE AS E L++ E R+ FA RRTE + GD S
Sbjct 438 KIMAEYREILALIN-RLKEILASEVEILKIIKSELSEIREKFADPRRTEIVDHRGDLS 494
>gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL1118]
Length=818
Score = 41.6 bits (96), Expect = 0.099, Method: Composition-based stats.
Identities = 26/81 (33%), Positives = 43/81 (54%), Gaps = 0/81 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D ++ AR EI L+ A++ +V I + NKA A + ++ + AEA++S+
Sbjct 367 DLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAEAIVSLQ 426
Query 77 FDQLTQDARTKIIAELDDLNK 97
+LT ++IAE D LNK
Sbjct 427 LYRLTNTDVNELIAEQDKLNK 447
>gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL
1112]
gi|325956845|ref|YP_004292257.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
gi|312276567|gb|ADQ59207.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL
1112]
gi|325333410|gb|ADZ07318.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
Length=818
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 26/81 (33%), Positives = 43/81 (54%), Gaps = 0/81 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D ++ AR EI L+ A++ +V I + NKA A + ++ + AEA++S+
Sbjct 367 DLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAEAIVSLQ 426
Query 77 FDQLTQDARTKIIAELDDLNK 97
+LT ++IAE D LNK
Sbjct 427 LYRLTNTDVNELIAEQDKLNK 447
>gi|332879627|ref|ZP_08447322.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682593|gb|EGJ55495.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length=855
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 25/85 (30%), Positives = 41/85 (49%), Gaps = 0/85 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D + R I L+ A + EV I A N AA+E ++N + A+A++ M
Sbjct 366 DLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMNRFELDEVQAKAIVEMR 425
Query 77 FDQLTQDARTKIIAELDDLNKQLSF 101
QLT + ++ E D+L KQ+ +
Sbjct 426 LRQLTNLMQEQLRNEYDELLKQIEY 450
>gi|116669031|ref|YP_829964.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
gi|116609140|gb|ABK01864.1| DNA gyrase, A subunit [Arthrobacter sp. FB24]
Length=90
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/85 (31%), Positives = 45/85 (53%), Gaps = 2/85 (2%)
Query 17 DHDQTAARRE--IADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMS 74
D D+ AR + I DAL+ A++RR EV I ++ + A+ + LLG L + V+
Sbjct 2 DEDERQAREQLMIHDALVQAMDRREEVFQEIEDSEDMDEAIRRVGQLLGVGELGSRFVLD 61
Query 75 MSFDQLTQDARTKIIAELDDLNKQL 99
+ + T+D R I + ++L +L
Sbjct 62 LQARRFTRDQRQAISSYAEELRSRL 86
>gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
Length=832
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/86 (32%), Positives = 47/86 (55%), Gaps = 2/86 (2%)
Query 24 RREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQLTQD 83
R I L+ AL+ EV I +AN AA +++LL + A+A+++M +L+
Sbjct 387 RAHILRGLVKALDALDEVIALIRASANTEAARTGLMDLLDIDEIQADAILAMQLRRLSAL 446
Query 84 ARTKIIAELDDLNKQLS--FTVKERP 107
R KII EL ++ ++++ + ERP
Sbjct 447 ERQKIIDELAEIEREIADLKDILERP 472
>gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
JV-V01]
gi|256843236|ref|ZP_05548724.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
gi|256850407|ref|ZP_05555835.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
gi|262046444|ref|ZP_06019406.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
gi|227861758|gb|EEJ69360.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
JV-V01]
gi|256614656|gb|EEU19857.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
gi|256712804|gb|EEU27797.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
gi|260573315|gb|EEX29873.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
Length=819
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 27/82 (33%), Positives = 43/82 (53%), Gaps = 1/82 (1%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGT-SHLAAEAVMSM 75
D D+ AR EI L+ A++ +V I + NKA A + ++ + AEA++S+
Sbjct 367 DLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQAEAIVSL 426
Query 76 SFDQLTQDARTKIIAELDDLNK 97
+LT ++IAE D LNK
Sbjct 427 QLYRLTNTDVNELIAEQDKLNK 448
>gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
gi|290922845|gb|EFD99792.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
Length=819
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 27/82 (33%), Positives = 43/82 (53%), Gaps = 1/82 (1%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGT-SHLAAEAVMSM 75
D D+ AR EI L+ A++ +V I + NKA A + ++ + AEA++S+
Sbjct 367 DLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQAEAIVSL 426
Query 76 SFDQLTQDARTKIIAELDDLNK 97
+LT ++IAE D LNK
Sbjct 427 QLYRLTNTDVNELIAEQDKLNK 448
>gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
Length=894
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 25/85 (30%), Positives = 42/85 (50%), Gaps = 0/85 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D ++ + I D L A+ EV I +AN A A E + S +A++ M+
Sbjct 431 DLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKRFNLSDRQTKAILDMN 490
Query 77 FDQLTQDARTKIIAELDDLNKQLSF 101
+LT K+ E+D+LNK++S+
Sbjct 491 LRRLTGLNIEKMNLEIDELNKEISY 515
>gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum]
Length=817
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/78 (31%), Positives = 41/78 (53%), Gaps = 0/78 (0%)
Query 23 ARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFDQLTQ 82
+R I + L ALE + I EA + A A EA++ S + A+A++ M +LT
Sbjct 376 SRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTRFALSRVQAQAILEMQLQRLTS 435
Query 83 DARTKIIAELDDLNKQLS 100
R K++ E + L K+++
Sbjct 436 LERQKLLEEYEGLVKRMA 453
>gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
Length=899
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 25/85 (30%), Positives = 42/85 (50%), Gaps = 0/85 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D ++ + I D L A+ EV I +AN A A E + + +A++ MS
Sbjct 431 DLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDAIAQERLGTRFNLTEKQTKAILDMS 490
Query 77 FDQLTQDARTKIIAELDDLNKQLSF 101
+LT K+ E+D+LNK++S+
Sbjct 491 LRRLTGLNIEKMNQEIDELNKEISY 515
>gi|340792971|ref|YP_004758434.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
gi|340532881|gb|AEK35361.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
Length=850
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/131 (32%), Positives = 58/131 (45%), Gaps = 13/131 (9%)
Query 19 DQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMSFD 78
D+ R I L+ AL+ EV I +A A E + +LL + A+A+++M
Sbjct 396 DEAEKRAHILRGLVKALDALDEVIALIRRSATVDIAREGLKDLLDIDDIQADAILAMQLR 455
Query 79 QLTQDARTKIIAELD-------DLNKQLSFTVKERPASSGEGLELRPFSPDEDRDIFARR 131
+L R KII EL DL L+ ++R E E+ DE RR
Sbjct 456 RLAALERQKIIDELAEIEETIADLKAILASPERQRAIVRDELTEIVEKFGDE------RR 509
Query 132 TEEMGAAGDGS 142
TE +GA GD S
Sbjct 510 TEIVGATGDVS 520
>gi|336392839|ref|ZP_08574238.1| DNA topoisomerase IV subunit A [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length=819
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/84 (31%), Positives = 43/84 (52%), Gaps = 0/84 (0%)
Query 17 DHDQTAARREIADALLAALERRHEVADAIVEAANKAAAVEAIVNLLGTSHLAAEAVMSMS 76
D D+ AR+ I L+ AL +V I ++ NK A + +V + AEA++S+
Sbjct 367 DLDKAQARQHIVLGLIKALSILDQVIKVIRQSKNKKNAKDNLVAAFQFTEPQAEAIVSLQ 426
Query 77 FDQLTQDARTKIIAELDDLNKQLS 100
+LT T + E DL+KQ++
Sbjct 427 LYRLTNTDITALQKEQADLDKQIA 450
Lambda K H
0.316 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 333756066840
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40