BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0735

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607875|ref|NP_215249.1|  RNA polymerase sigma factor SigL [M...   348    1e-94
gi|41410299|ref|NP_963135.1|  RNA polymerase sigma factor SigL [M...   320    5e-86
gi|118466573|ref|YP_883566.1|  RNA polymerase sigma factor SigL [...   320    6e-86
gi|336460627|gb|EGO39518.1|  RNA polymerase sigma factor, sigma-7...   309    8e-83
gi|296168599|ref|ZP_06850403.1|  DNA-directed RNA polymerase sigm...   308    2e-82
gi|240167750|ref|ZP_04746409.1|  RNA polymerase sigma factor SigL...   306    1e-81
gi|342861834|ref|ZP_08718479.1|  RNA polymerase sigma factor SigL...   303    8e-81
gi|254822308|ref|ZP_05227309.1|  RNA polymerase sigma factor SigL...   300    4e-80
gi|183981093|ref|YP_001849384.1|  alternative RNA polymerase sigm...   283    9e-75
gi|118616608|ref|YP_904940.1|  RNA polymerase sigma factor SigL [...   278    2e-73
gi|120402361|ref|YP_952190.1|  RNA polymerase sigma factor SigL [...   251    4e-65
gi|145225595|ref|YP_001136273.1|  RNA polymerase sigma factor Sig...   247    5e-64
gi|315445948|ref|YP_004078827.1|  RNA polymerase sigma factor, si...   246    1e-63
gi|108798022|ref|YP_638219.1|  RNA polymerase sigma factor SigL [...   226    9e-58
gi|126433684|ref|YP_001069375.1|  RNA polymerase sigma factor Sig...   225    2e-57
gi|118468828|ref|YP_885868.1|  RNA polymerase sigma factor SigL [...   223    1e-56
gi|333990406|ref|YP_004523020.1|  RNA polymerase sigma factor (Rp...   222    2e-56
gi|333990404|ref|YP_004523018.1|  RNA polymerase sigma factor (Rp...   216    1e-54
gi|226360396|ref|YP_002778174.1|  RNA polymerase sigma factor Sig...   210    8e-53
gi|111018271|ref|YP_701243.1|  RNA polymerase sigma factor SigL [...   209    1e-52
gi|169629249|ref|YP_001702898.1|  ECF subfamily RNA polymerase si...   195    2e-48
gi|54027486|ref|YP_121728.1|  RNA polymerase sigma factor SigL [N...   192    2e-47
gi|118473538|ref|YP_889460.1|  RNA polymerase sigma-70 factor [My...   183    1e-44
gi|284028825|ref|YP_003378756.1|  ECF subfamily RNA polymerase si...   181    5e-44
gi|229818746|ref|YP_002880272.1|  ECF subfamily RNA polymerase si...   179    2e-43
gi|323359468|ref|YP_004225864.1|  DNA-directed RNA polymerase spe...   177    5e-43
gi|170781282|ref|YP_001709614.1|  putative RNA polymerase sigma f...   171    6e-41
gi|269958057|ref|YP_003327846.1|  ECF subfamily RNA polymerase si...   167    5e-40
gi|148271469|ref|YP_001221030.1|  RNA polymerase ECF-subfamily si...   167    5e-40
gi|296131341|ref|YP_003638591.1|  RNA polymerase, sigma-24 subuni...   167    8e-40
gi|152965766|ref|YP_001361550.1|  ECF family RNA polymerase sigma...   163    1e-38
gi|300784637|ref|YP_003764928.1|  RNA polymerase sigma-70 factor,...   162    2e-38
gi|326331604|ref|ZP_08197894.1|  RNA polymerase sigma-70 factor, ...   161    3e-38
gi|258651324|ref|YP_003200480.1|  ECF subfamily RNA polymerase si...   160    8e-38
gi|269124861|ref|YP_003298231.1|  ECF subfamily RNA polymerase si...   158    3e-37
gi|119715911|ref|YP_922876.1|  sigma-70 region 2 domain-containin...   158    4e-37
gi|290560169|pdb|3HUG|A  Chain A, Crystal Structure Of Mycobacter...   158    4e-37
gi|334338337|ref|YP_004543489.1|  RNA polymerase, sigma-24 subuni...   157    9e-37
gi|271962450|ref|YP_003336646.1|  ECF subfamily RNA polymerase si...   156    9e-37
gi|340526060|gb|AEK41265.1|  RNA polymerase sigma-70 factor, ECF ...   156    1e-36
gi|332670413|ref|YP_004453421.1|  ECF subfamily RNA polymerase si...   155    2e-36
gi|117927268|ref|YP_871819.1|  RNA polymerase sigma factor SigL [...   154    5e-36
gi|296268445|ref|YP_003651077.1|  ECF subfamily RNA polymerase si...   153    1e-35
gi|84495421|ref|ZP_00994540.1|  RNA polymerase sigma-70 factor [J...   152    2e-35
gi|302864919|ref|YP_003833556.1|  sigma-70 family RNA polymerase ...   148    3e-34
gi|238062228|ref|ZP_04606937.1|  LuxR family transcriptional regu...   147    5e-34
gi|163840316|ref|YP_001624721.1|  RNA polymerase sigma factor [Re...   146    1e-33
gi|330465220|ref|YP_004402963.1|  RNA polymerase, sigma-24 subuni...   146    1e-33
gi|291298050|ref|YP_003509328.1|  ECF subfamily RNA polymerase si...   143    1e-32
gi|159039958|ref|YP_001539211.1|  LuxR family transcriptional reg...   143    1e-32


>gi|15607875|ref|NP_215249.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
H37Rv]
 gi|15840142|ref|NP_335179.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
CDC1551]
 gi|31791921|ref|NP_854414.1| RNA polymerase sigma factor SigL [Mycobacterium bovis AF2122/97]
 81 more sequence titles
 
gi|121636657|ref|YP_976880.1| RNA polymerase sigma factor SigL [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148660510|ref|YP_001282033.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
H37Ra]
 gi|148821940|ref|YP_001286694.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
F11]
 gi|167968294|ref|ZP_02550571.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
H37Ra]
 gi|224989129|ref|YP_002643816.1| RNA polymerase sigma factor SigL [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|253797679|ref|YP_003030680.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
KZN 1435]
 gi|254231052|ref|ZP_04924379.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
C]
 gi|254363681|ref|ZP_04979727.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
str. Haarlem]
 gi|254549697|ref|ZP_05140144.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289442136|ref|ZP_06431880.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T46]
 gi|289446295|ref|ZP_06436039.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
CPHL_A]
 gi|289552992|ref|ZP_06442202.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
KZN 605]
 gi|289568680|ref|ZP_06448907.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T17]
 gi|289573343|ref|ZP_06453570.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
K85]
 gi|289744459|ref|ZP_06503837.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
02_1987]
 gi|289749243|ref|ZP_06508621.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T92]
 gi|289752782|ref|ZP_06512160.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis EAS054]
 gi|289756823|ref|ZP_06516201.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T85]
 gi|289760862|ref|ZP_06520240.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
GM 1503]
 gi|294996218|ref|ZP_06801909.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
210]
 gi|297633235|ref|ZP_06951015.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730215|ref|ZP_06959333.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
KZN R506]
 gi|298524226|ref|ZP_07011635.1| RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium 
tuberculosis 94_M4241A]
 gi|306774845|ref|ZP_07413182.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu001]
 gi|306781422|ref|ZP_07419759.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu002]
 gi|306783388|ref|ZP_07421710.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu003]
 gi|306787758|ref|ZP_07426080.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu004]
 gi|306794526|ref|ZP_07432828.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu005]
 gi|306796491|ref|ZP_07434793.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu006]
 gi|306802351|ref|ZP_07439019.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu008]
 gi|306806560|ref|ZP_07443228.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu007]
 gi|306966758|ref|ZP_07479419.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu009]
 gi|306970949|ref|ZP_07483610.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu010]
 gi|307078679|ref|ZP_07487849.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu011]
 gi|307083240|ref|ZP_07492353.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu012]
 gi|313657542|ref|ZP_07814422.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
KZN V2475]
 gi|339630804|ref|YP_004722446.1| RNA polymerase sigma factor [Mycobacterium africanum GM041182]
 gi|340625756|ref|YP_004744208.1| putative alternative RNA polymerase sigma factor SIGL [Mycobacterium 
canettii CIPT 140010059]
 gi|2911009|emb|CAA17502.1| PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGL [Mycobacterium 
tuberculosis H37Rv]
 gi|4191727|gb|AAD09884.1| RNA polymerase ECF sigma factor [Mycobacterium bovis]
 gi|13880294|gb|AAK44993.1| RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium 
tuberculosis CDC1551]
 gi|31617508|emb|CAD93618.1| PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGL [Mycobacterium 
bovis AF2122/97]
 gi|121492304|emb|CAL70771.1| Probable alternative rna polymerase sigma factor sigL [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|124600111|gb|EAY59121.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
C]
 gi|134149195|gb|EBA41240.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
str. Haarlem]
 gi|148504662|gb|ABQ72471.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis H37Ra]
 gi|148720467|gb|ABR05092.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
F11]
 gi|224772242|dbj|BAH25048.1| RNA polymerase sigma factor SigL [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|253319182|gb|ACT23785.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
KZN 1435]
 gi|289415055|gb|EFD12295.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T46]
 gi|289419253|gb|EFD16454.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
CPHL_A]
 gi|289437624|gb|EFD20117.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
KZN 605]
 gi|289537774|gb|EFD42352.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
K85]
 gi|289542434|gb|EFD46082.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T17]
 gi|289684987|gb|EFD52475.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
02_1987]
 gi|289689830|gb|EFD57259.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T92]
 gi|289693369|gb|EFD60798.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis EAS054]
 gi|289708368|gb|EFD72384.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
GM 1503]
 gi|289712387|gb|EFD76399.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
T85]
 gi|298494020|gb|EFI29314.1| RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium 
tuberculosis 94_M4241A]
 gi|308216735|gb|EFO76134.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu001]
 gi|308325722|gb|EFP14573.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu002]
 gi|308331880|gb|EFP20731.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu003]
 gi|308335667|gb|EFP24518.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu004]
 gi|308337124|gb|EFP25975.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu005]
 gi|308343149|gb|EFP32000.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu006]
 gi|308347036|gb|EFP35887.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu007]
 gi|308350920|gb|EFP39771.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu008]
 gi|308355610|gb|EFP44461.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu009]
 gi|308359569|gb|EFP48420.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu010]
 gi|308363473|gb|EFP52324.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu011]
 gi|308367109|gb|EFP55960.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
SUMu012]
 gi|323720862|gb|EGB29929.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
CDC1551A]
 gi|326905043|gb|EGE51976.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
W-148]
 gi|328457459|gb|AEB02882.1| alternative RNA polymerase sigma factor sigL [Mycobacterium tuberculosis 
KZN 4207]
 gi|339293760|gb|AEJ45871.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297399|gb|AEJ49509.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
CCDC5180]
 gi|339330160|emb|CCC25817.1| putative alternative RNA polymerase sigma factor SIGL [Mycobacterium 
africanum GM041182]
 gi|340003946|emb|CCC43080.1| putative alternative RNA polymerase sigma factor SIGL [Mycobacterium 
canettii CIPT 140010059]
 gi|341600673|emb|CCC63343.1| probable alternative rna polymerase sigma factor sigL [Mycobacterium 
bovis BCG str. Moreau RDJ]
 gi|344218560|gb|AEM99190.1| RNA polymerase sigma factor SigL [Mycobacterium tuberculosis 
CTRI-2]
Length=177

 Score =  348 bits (894),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 177/177 (100%), Gaps = 0/177 (0%)

Query  1    VARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD  60
            +ARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD
Sbjct  1    MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD  60

Query  61   TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL  120
            TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL
Sbjct  61   TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL  120

Query  121  AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  121  AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177


>gi|41410299|ref|NP_963135.1| RNA polymerase sigma factor SigL [Mycobacterium avium subsp. 
paratuberculosis K-10]
 gi|41399133|gb|AAS06751.1| SigL [Mycobacterium avium subsp. paratuberculosis K-10]
Length=181

 Score =  320 bits (820),  Expect = 5e-86, Method: Compositional matrix adjust.
 Identities = 159/177 (90%), Positives = 169/177 (96%), Gaps = 2/177 (1%)

Query  1    VARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD  60
            ++R SG A  EAALM+ALYDEHAAVLWRYALRLTGDA+Q+EDVVQETLLRAWQHPEVIGD
Sbjct  7    ISRASGTA--EAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGD  64

Query  61   TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL  120
            T R ARAWLFTVARNMIID+RRSARFRNVVGSTD +G PEQSTPDEVNAALDRLLIADA+
Sbjct  65   TERSARAWLFTVARNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAM  124

Query  121  AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            AQLSAEHRAVI+RSYYRGW+TAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  125  AQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  181


>gi|118466573|ref|YP_883566.1| RNA polymerase sigma factor SigL [Mycobacterium avium 104]
 gi|254776867|ref|ZP_05218383.1| RNA polymerase sigma factor SigL [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118167860|gb|ABK68757.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
Length=178

 Score =  320 bits (819),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 159/177 (90%), Positives = 169/177 (96%), Gaps = 2/177 (1%)

Query  1    VARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD  60
            ++R SG A  EAALM+ALYDEHAAVLWRYALRLTGDA+Q+EDVVQETLLRAWQHPEVIGD
Sbjct  4    ISRASGTA--EAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGD  61

Query  61   TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL  120
            T R ARAWLFTVARNMIID+RRSARFRNVVGSTD +G PEQSTPDEVNAALDRLLIADA+
Sbjct  62   TERSARAWLFTVARNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAM  121

Query  121  AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            AQLSAEHRAVI+RSYYRGW+TAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  122  AQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  178


>gi|336460627|gb|EGO39518.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=163

 Score =  309 bits (792),  Expect = 8e-83, Method: Compositional matrix adjust.
 Identities = 151/163 (93%), Positives = 159/163 (98%), Gaps = 0/163 (0%)

Query  15   MRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVAR  74
            M+ALYDEHAAVLWRYALRLTGDA+Q+EDVVQETLLRAWQHPEVIGDT R ARAWLFTVAR
Sbjct  1    MKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGDTERSARAWLFTVAR  60

Query  75   NMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRS  134
            NMIID+RRSARFRNVVGSTD +G PEQSTPDEVNAALDRLLIADA+AQLSAEHRAVI+RS
Sbjct  61   NMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMAQLSAEHRAVIERS  120

Query  135  YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            YYRGW+TAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  121  YYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  163


>gi|296168599|ref|ZP_06850403.1| DNA-directed RNA polymerase sigma subunit SigL [Mycobacterium 
parascrofulaceum ATCC BAA-614]
 gi|295896662|gb|EFG76301.1| DNA-directed RNA polymerase sigma subunit SigL [Mycobacterium 
parascrofulaceum ATCC BAA-614]
Length=177

 Score =  308 bits (789),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 157/177 (89%), Positives = 171/177 (97%), Gaps = 0/177 (0%)

Query  1    VARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD  60
            +ARV+G AAAEAALM+ALYDEHAAVLWRYALRLTGDA+Q+EDVVQETLLRAWQHPEV+GD
Sbjct  1    MARVAGNAAAEAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVVGD  60

Query  61   TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL  120
            T R ARAWLFTVARNMIID+RRSARFRNVVGSTD++G PE+STPDEVNAALD+LLIADA+
Sbjct  61   TERSARAWLFTVARNMIIDDRRSARFRNVVGSTDEAGAPERSTPDEVNAALDKLLIADAM  120

Query  121  AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
             QLSAEHRAVI+RSYYRGW+TAQIA DLGIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  121  VQLSAEHRAVIERSYYRGWTTAQIAADLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177


>gi|240167750|ref|ZP_04746409.1| RNA polymerase sigma factor SigL [Mycobacterium kansasii ATCC 
12478]
Length=181

 Score =  306 bits (783),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 154/181 (86%), Positives = 165/181 (92%), Gaps = 4/181 (2%)

Query  1    VARVSG----AAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPE  56
            + RV+G    + A EAALM+ALYDEHAAVLWRYALRLTGDA+QAEDVVQETLLRAWQHPE
Sbjct  1    MGRVAGTRAASGATEAALMKALYDEHAAVLWRYALRLTGDASQAEDVVQETLLRAWQHPE  60

Query  57   VIGDTARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLI  116
            VIGDT R ARAWLFTVARNMIID+RRSAR RNVVGSTD+SG PEQS PDEVNAALDRLLI
Sbjct  61   VIGDTERSARAWLFTVARNMIIDDRRSARSRNVVGSTDESGAPEQSVPDEVNAALDRLLI  120

Query  117  ADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            A+A+A LS EHRAVI+RSYYRGW+TAQIA DLGIAEGTVKSRLHYAVRALRL LQELGVT
Sbjct  121  AEAMAHLSDEHRAVIERSYYRGWTTAQIAGDLGIAEGTVKSRLHYAVRALRLGLQELGVT  180

Query  177  R  177
            R
Sbjct  181  R  181


>gi|342861834|ref|ZP_08718479.1| RNA polymerase sigma factor SigL [Mycobacterium colombiense CECT 
3035]
 gi|342130651|gb|EGT83955.1| RNA polymerase sigma factor SigL [Mycobacterium colombiense CECT 
3035]
Length=163

 Score =  303 bits (775),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 147/163 (91%), Positives = 156/163 (96%), Gaps = 0/163 (0%)

Query  15   MRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVAR  74
            M+ALYDEHAAVLWRYALRLTGDA+Q+EDVVQETLLRAWQHPEV+GDT R ARAWLFTVAR
Sbjct  1    MKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVVGDTERSARAWLFTVAR  60

Query  75   NMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRS  134
            NMIID+RRSARFRNVVGSTD +G PEQSTPDEVNAALDRLLIADA+AQLSAEHRAVI+RS
Sbjct  61   NMIIDDRRSARFRNVVGSTDVTGAPEQSTPDEVNAALDRLLIADAMAQLSAEHRAVIERS  120

Query  135  YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            YYRGW+T Q A DLGIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  121  YYRGWTTTQTAADLGIAEGTVKSRLHYAVRALRLTLQELGVTR  163


>gi|254822308|ref|ZP_05227309.1| RNA polymerase sigma factor SigL [Mycobacterium intracellulare 
ATCC 13950]
Length=163

 Score =  300 bits (769),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 145/163 (89%), Positives = 156/163 (96%), Gaps = 0/163 (0%)

Query  15   MRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVAR  74
            M+AL+DEHAAVLWRYALRLTGD +Q+EDVVQETLLRAWQHPEV+GDT R ARAWLFTVAR
Sbjct  1    MKALFDEHAAVLWRYALRLTGDTSQSEDVVQETLLRAWQHPEVVGDTERSARAWLFTVAR  60

Query  75   NMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRS  134
            NMIID+RRSAR+RNVVGSTD SG PEQSTPDEVNAALDRLLIADA+AQLSA+HRAVI+RS
Sbjct  61   NMIIDDRRSARYRNVVGSTDVSGAPEQSTPDEVNAALDRLLIADAMAQLSADHRAVIERS  120

Query  135  YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            YYRGW+T QIA DLGIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  121  YYRGWTTTQIAADLGIAEGTVKSRLHYAVRALRLTLQELGVTR  163


>gi|183981093|ref|YP_001849384.1| alternative RNA polymerase sigma factor (RpoE), SigL [Mycobacterium 
marinum M]
 gi|183174419|gb|ACC39529.1| alternative RNA polymerase sigma factor (RpoE), SigL [Mycobacterium 
marinum M]
Length=177

 Score =  283 bits (723),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 148/177 (84%), Positives = 160/177 (91%), Gaps = 0/177 (0%)

Query  1    VARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD  60
            +ARV+G  AAEAALM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct  1    MARVAGGGAAEAALMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE  60

Query  61   TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL  120
              R ARAWLFTVARNMIID+RRSAR+R VV STD  G PEQSTPDEV AALDRLLIADAL
Sbjct  61   RGRSARAWLFTVARNMIIDDRRSARYRYVVSSTDADGAPEQSTPDEVGAALDRLLIADAL  120

Query  121  AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            AQLS EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  121  AQLSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR  177


>gi|118616608|ref|YP_904940.1| RNA polymerase sigma factor SigL [Mycobacterium ulcerans Agy99]
 gi|118568718|gb|ABL03469.1| alternative RNA polymerase sigma factor (RpoE), SigL [Mycobacterium 
ulcerans Agy99]
Length=177

 Score =  278 bits (712),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 146/177 (83%), Positives = 158/177 (90%), Gaps = 0/177 (0%)

Query  1    VARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD  60
            +ARV+G  AAEAALM+ALYDEHAAVLWRY +RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct  1    MARVAGGGAAEAALMQALYDEHAAVLWRYTMRLTSDASYADDIVQETLLRAWQHPEVIDE  60

Query  61   TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL  120
              R ARAWLFTVARNMIID+RRSAR+R VV STD  G PEQSTPDEV AAL RLLIADAL
Sbjct  61   RGRSARAWLFTVARNMIIDDRRSARYRYVVSSTDADGAPEQSTPDEVGAALGRLLIADAL  120

Query  121  AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            AQLS EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct  121  AQLSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR  177


>gi|120402361|ref|YP_952190.1| RNA polymerase sigma factor SigL [Mycobacterium vanbaalenii PYR-1]
 gi|119955179|gb|ABM12184.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
vanbaalenii PYR-1]
Length=171

 Score =  251 bits (640),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 121/167 (73%), Positives = 141/167 (85%), Gaps = 0/167 (0%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLF  70
            EAA+MR LYDEHAA LWRYALRLTGD A+AEDVVQETLLRAW+HPEV  D  R ARAWLF
Sbjct  5    EAAMMRVLYDEHAAALWRYALRLTGDRARAEDVVQETLLRAWRHPEVTADVDRSARAWLF  64

Query  71   TVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAV  130
            TVARNMIIDERRSARF++  G  D    P+ ++PDE + ALDR+L++ AL+QLS EHRAV
Sbjct  65   TVARNMIIDERRSARFKHESGVADTEYVPDSASPDEADTALDRILLSTALSQLSDEHRAV  124

Query  131  IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            ++R+YY+GW+T QIA DL I EGTVKSRLHYAVRAL+L LQE+GVTR
Sbjct  125  VRRAYYQGWTTGQIAADLNIPEGTVKSRLHYAVRALKLGLQEMGVTR  171


>gi|145225595|ref|YP_001136273.1| RNA polymerase sigma factor SigL [Mycobacterium gilvum PYR-GCK]
 gi|145218081|gb|ABP47485.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
gilvum PYR-GCK]
Length=171

 Score =  247 bits (631),  Expect = 5e-64, Method: Compositional matrix adjust.
 Identities = 121/168 (73%), Positives = 139/168 (83%), Gaps = 0/168 (0%)

Query  10   AEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            A+AA+MR LYDEHAA LWRYALRLTGD A++EDVVQETLLRAW+HP VI D  RPARAWL
Sbjct  4    ADAAMMRVLYDEHAAALWRYALRLTGDRARSEDVVQETLLRAWRHPGVIADVDRPARAWL  63

Query  70   FTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRA  129
            FTVARNMIIDERRSARFR+  G  D     E ++PDE +  LDR+L+  AL QLS EHRA
Sbjct  64   FTVARNMIIDERRSARFRHETGVPDPEHVAEPASPDEADPTLDRILLGTALRQLSDEHRA  123

Query  130  VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            V++R+YY+GW+T QIA DL I EGTVKSRLHYAVRAL+L LQE+GVTR
Sbjct  124  VVRRAYYQGWTTGQIAADLQIPEGTVKSRLHYAVRALKLGLQEMGVTR  171


>gi|315445948|ref|YP_004078827.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
 gi|315264251|gb|ADU00993.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
Length=171

 Score =  246 bits (627),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 120/168 (72%), Positives = 139/168 (83%), Gaps = 0/168 (0%)

Query  10   AEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            A+AA+MR LYDEHAA LWRYALRLTGD A++EDVVQETLLR+W+HP VI D  RPARAWL
Sbjct  4    ADAAMMRVLYDEHAAALWRYALRLTGDRARSEDVVQETLLRSWRHPGVIADLDRPARAWL  63

Query  70   FTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRA  129
            FTVARNMIIDERRSARFR+  G  D     E ++PDE +  LDR+L+  AL QLS EHRA
Sbjct  64   FTVARNMIIDERRSARFRHETGVPDPEHVAEPASPDEADPTLDRILLGTALRQLSDEHRA  123

Query  130  VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            V++R+YY+GW+T QIA DL I EGTVKSRLHYAVRAL+L LQE+GVTR
Sbjct  124  VVRRAYYQGWTTGQIAADLQIPEGTVKSRLHYAVRALKLGLQEMGVTR  171


>gi|108798022|ref|YP_638219.1| RNA polymerase sigma factor SigL [Mycobacterium sp. MCS]
 gi|119867117|ref|YP_937069.1| RNA polymerase sigma factor SigL [Mycobacterium sp. KMS]
 gi|108768441|gb|ABG07163.1| RNA polymerase, sigma-24 subunit, RpoE [Mycobacterium sp. MCS]
 gi|119693206|gb|ABL90279.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
sp. KMS]
Length=166

 Score =  226 bits (576),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 115/170 (68%), Positives = 135/170 (80%), Gaps = 11/170 (6%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARP---ARA  67
            EA +MR LYDEHA  LWRYAL+LTGDAA AEDVVQETLLRAW+H        RP   ARA
Sbjct  5    EATMMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRH--------RPNGSARA  56

Query  68   WLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEH  127
            WLFTVARN++IDERRSAR+R   G+ D     + S PD+V++ALDR+LI  ALAQLS +H
Sbjct  57   WLFTVARNLVIDERRSARYRREAGTPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDH  116

Query  128  RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            RAV++R+YY+GW+T QIA +L I EGTVKSRLHYAVRALRL LQE+GVTR
Sbjct  117  RAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR  166


>gi|126433684|ref|YP_001069375.1| RNA polymerase sigma factor SigL [Mycobacterium sp. JLS]
 gi|126233484|gb|ABN96884.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium 
sp. JLS]
Length=166

 Score =  225 bits (574),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 115/170 (68%), Positives = 135/170 (80%), Gaps = 11/170 (6%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARP---ARA  67
            EA +MR LYDEHA  LWRYAL+LTGDAA AEDVVQETLLRAW+H        RP   ARA
Sbjct  5    EATMMRVLYDEHADALWRYALQLTGDAATAEDVVQETLLRAWRH--------RPNGSARA  56

Query  68   WLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEH  127
            WLFTVARN++IDERRSAR+R   G+ D     + S PD+V++ALDR+LI  ALAQLS +H
Sbjct  57   WLFTVARNLVIDERRSARYRREAGTPDVETVAQPSEPDKVDSALDRMLIGSALAQLSEDH  116

Query  128  RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            RAV++R+YY+GW+T QIA +L I EGTVKSRLHYAVRALRL LQE+GVTR
Sbjct  117  RAVVRRAYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR  166


>gi|118468828|ref|YP_885868.1| RNA polymerase sigma factor SigL [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170115|gb|ABK71011.1| RNA polymerase sigma-70 factor [Mycobacterium smegmatis str. 
MC2 155]
Length=180

 Score =  223 bits (567),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 117/176 (67%), Positives = 136/176 (78%), Gaps = 9/176 (5%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQH-PEV--------IGDT  61
            EAA+MRALYDEHA  LWRYALRLTGD A+AEDVVQETLLRAW+H P++        I   
Sbjct  5    EAAMMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGP  64

Query  62   ARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA  121
             R  RAWLFTVARNMIIDERRSARFRN     D     + +T D+V+ ALDRLL+  AL 
Sbjct  65   DRSPRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALR  124

Query  122  QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            QLS +HRAVI+R+YY+G +T QIA +L I EGTVKSRLHYAVRAL+L+LQE+GVTR
Sbjct  125  QLSDDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR  180


>gi|333990406|ref|YP_004523020.1| RNA polymerase sigma factor (RpoE) SigL [Mycobacterium sp. JDM601]
 gi|333486374|gb|AEF35766.1| alternative RNA polymerase sigma factor (RpoE) SigL [Mycobacterium 
sp. JDM601]
Length=169

 Score =  222 bits (565),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 118/167 (71%), Positives = 138/167 (83%), Gaps = 2/167 (1%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLF  70
            EA  MR LYD+HAA L RYALRLTGD ++AEDVVQETLLRAWQHPEV+ D  R ARAWLF
Sbjct  5    EAGAMRMLYDQHAAALSRYALRLTGDPSRAEDVVQETLLRAWQHPEVVDDVTRSARAWLF  64

Query  71   TVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAV  130
            TVARN++IDERRS RFR+   S    GTP+   PDE   +LDR+LI +A+A+LSA+HR V
Sbjct  65   TVARNIVIDERRSMRFRS--ESRPGPGTPDPPGPDEAGLSLDRMLITEAIARLSADHRGV  122

Query  131  IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            ++RSYY+GWSTAQIA DLGIAEGTVKSRLHYA+RALR TL E+G+TR
Sbjct  123  VRRSYYQGWSTAQIADDLGIAEGTVKSRLHYALRALRHTLDEMGMTR  169


>gi|333990404|ref|YP_004523018.1| RNA polymerase sigma factor (RpoE) SigL [Mycobacterium sp. JDM601]
 gi|333486372|gb|AEF35764.1| alternative RNA polymerase sigma factor (RpoE) SigL [Mycobacterium 
sp. JDM601]
Length=175

 Score =  216 bits (550),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 113/165 (69%), Positives = 134/165 (82%), Gaps = 5/165 (3%)

Query  13   ALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            AL+  LY EHAA L RYALRLTGD ++A+D+VQETLLRAW+H EV G++AR   AWLFTV
Sbjct  16   ALVGVLYAEHAAALRRYALRLTGDRSRADDIVQETLLRAWKHLEVTGNSAR---AWLFTV  72

Query  73   ARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQ  132
            AR++IID+ RSA+ R+ VG  D  G PEQ+ PDE+NA LDR+LIA+A+ +LS EHR VI 
Sbjct  73   ARHLIIDQSRSAQARHEVGLLD--GVPEQAGPDEINATLDRMLIAEAVTRLSPEHREVIC  130

Query  133  RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            RSYY GW+TA IA DLGIAEGTVKSRLHYAVRALR  LQE+GV R
Sbjct  131  RSYYHGWTTALIAADLGIAEGTVKSRLHYAVRALRRALQEMGVAR  175


>gi|226360396|ref|YP_002778174.1| RNA polymerase sigma factor SigL [Rhodococcus opacus B4]
 gi|226238881|dbj|BAH49229.1| RNA polymerase ECF-type sigma factor SigL [Rhodococcus opacus 
B4]
Length=168

 Score =  210 bits (534),  Expect = 8e-53, Method: Compositional matrix adjust.
 Identities = 105/168 (63%), Positives = 128/168 (77%), Gaps = 3/168 (1%)

Query  10   AEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            A+  LM ALY+EHA  +WRYALRLTGD A+AED+VQE LLRAW+HP V+  +   ARAWL
Sbjct  4    AQTELMHALYEEHAPAVWRYALRLTGDRARAEDIVQEVLLRAWKHPNVLDQSESSARAWL  63

Query  70   FTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRA  129
            FTVARN++ DE RSAR +  VG    S TPE++ PD  + ALD  ++ DALA+LS +HRA
Sbjct  64   FTVARNLVFDEHRSARSQREVG---MSSTPERAAPDGSDGALDAWMMGDALARLSTDHRA  120

Query  130  VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            V+   YYRG ST QIA +LGI EGTVKSR+HY +RALRL LQE+GVTR
Sbjct  121  VLVLGYYRGMSTHQIADELGIPEGTVKSRMHYGLRALRLALQEMGVTR  168


>gi|111018271|ref|YP_701243.1| RNA polymerase sigma factor SigL [Rhodococcus jostii RHA1]
 gi|110817801|gb|ABG93085.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii 
RHA1]
Length=168

 Score =  209 bits (532),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 103/168 (62%), Positives = 128/168 (77%), Gaps = 3/168 (1%)

Query  10   AEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            A+  LM ALY+EHA  +WRYALRLTGD A+AED+VQE LLRAW+HP V+  +   ARAWL
Sbjct  4    AQTELMHALYEEHAPAVWRYALRLTGDRARAEDIVQEVLLRAWKHPNVLDQSESSARAWL  63

Query  70   FTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRA  129
            FTVARN++ DE RSAR +  +G    S TPE++ PD  + ALD  ++ DALA+LS +HRA
Sbjct  64   FTVARNLVFDEHRSARSQREIG---MSSTPERAAPDSSDGALDAWMMGDALARLSPDHRA  120

Query  130  VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            V+   YYRG ST Q+A +LGI EGTVKSR+HY +RALRL LQE+GVTR
Sbjct  121  VLVLGYYRGMSTHQMADELGIPEGTVKSRMHYGLRALRLALQEMGVTR  168


>gi|169629249|ref|YP_001702898.1| ECF subfamily RNA polymerase sigma factor [Mycobacterium abscessus 
ATCC 19977]
 gi|169241216|emb|CAM62244.1| Probable RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium 
abscessus]
Length=160

 Score =  195 bits (496),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 97/163 (60%), Positives = 124/163 (77%), Gaps = 3/163 (1%)

Query  15   MRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVAR  74
            MRA YDE+A  L RY + LT D+A AED+VQE LLRAW+HP ++  T   ARAWLFTVA 
Sbjct  1    MRAFYDEYAGPLHRYVMHLTHDSALAEDIVQEVLLRAWRHPTLVNQTEGSARAWLFTVAH  60

Query  75   NMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRS  134
            N++ D  RS+RFR+ + + +   TPE ++PD+V+A LD  L+A+AL  LS +HRAVI R+
Sbjct  61   NLVRDNARSSRFRSEIATAE---TPEFASPDQVDATLDAWLVAEALRTLSTDHRAVILRA  117

Query  135  YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            YYRG S A I+ +LG+ EGTVKSRLHY VRALRL+LQE+GVTR
Sbjct  118  YYRGSSVADISAELGVPEGTVKSRLHYGVRALRLSLQEMGVTR  160


>gi|54027486|ref|YP_121728.1| RNA polymerase sigma factor SigL [Nocardia farcinica IFM 10152]
 gi|54018994|dbj|BAD60364.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=169

 Score =  192 bits (488),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 100/166 (61%), Positives = 119/166 (72%), Gaps = 3/166 (1%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLF  70
            +A LMR LY EHA  LWRY L L  DA +AED+VQETLLRAWQ P V+  +   ARAWLF
Sbjct  5    QAELMRVLYREHAPALWRYTLGLVRDAGRAEDIVQETLLRAWQRPSVLDQSTTSARAWLF  64

Query  71   TVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAV  130
            TVARN+++D+ RSAR R    +      PEQ+ PD  + ALD  L+ADAL  LSA+HR V
Sbjct  65   TVARNLVVDDFRSARNRREFRT---DNPPEQAEPDRSDRALDSWLVADALGGLSADHREV  121

Query  131  IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            I R+YYRG ST QIA +L I  GTVKSR+HY +RALRL LQE+GVT
Sbjct  122  IVRAYYRGLSTNQIAAELDIPAGTVKSRMHYGMRALRLALQEMGVT  167


>gi|118473538|ref|YP_889460.1| RNA polymerase sigma-70 factor [Mycobacterium smegmatis str. 
MC2 155]
 gi|118174825|gb|ABK75721.1| RNA polymerase sigma-70 factor [Mycobacterium smegmatis str. 
MC2 155]
Length=174

 Score =  183 bits (464),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 92/161 (58%), Positives = 115/161 (72%), Gaps = 1/161 (0%)

Query  15   MRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVAR  74
            M  LY  H   L RYA RLT +  ++ED+VQET LRAW+H +   D   P R+WLFTVAR
Sbjct  11   MLELYANHVDPLRRYAFRLTSNQTRSEDIVQETFLRAWRHLQN-NDGDLPLRSWLFTVAR  69

Query  75   NMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRS  134
            N++ID  RSAR R  V S D    P++   DEVNAALDR+L+A+A+AQL   HRAV+ RS
Sbjct  70   NIVIDGSRSARVRYEVSSPDTPEVPDRMGADEVNAALDRILVAEAMAQLPESHRAVLSRS  129

Query  135  YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGV  175
            +Y GW+T +IA DLGIAEGTVKSRLHY+++ LRL L E+G 
Sbjct  130  FYLGWTTGRIAEDLGIAEGTVKSRLHYSLKRLRLILAEMGC  170


>gi|284028825|ref|YP_003378756.1| ECF subfamily RNA polymerase sigma-24 subunit [Kribbella flavida 
DSM 17836]
 gi|283808118|gb|ADB29957.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kribbella flavida 
DSM 17836]
Length=169

 Score =  181 bits (458),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 94/166 (57%), Positives = 121/166 (73%), Gaps = 3/166 (1%)

Query  12   AALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFT  71
            AAL+R L+D HA  LWR+ +RLTGD   AEDVVQETLLRAW+ P+++ +    ARAWLFT
Sbjct  6    AALLRELHDVHAPSLWRFVVRLTGDDRLAEDVVQETLLRAWRRPQILTEDEAGARAWLFT  65

Query  72   VARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVI  131
            VARN++ID+RRSAR      S +    PE+++ D  NA LD  L+AD+LAQLS +HR VI
Sbjct  66   VARNLVIDDRRSARVNREFASDE---LPERASADHANAVLDAWLVADSLAQLSDDHRQVI  122

Query  132  QRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
             R+YY   + + IA +LGI  GTVKSR+HY +RAL+L LQE GVT+
Sbjct  123  VRAYYGRRTVSDIAAELGIPPGTVKSRMHYGLRALKLALQEKGVTQ  168


>gi|229818746|ref|YP_002880272.1| ECF subfamily RNA polymerase sigma-24 subunit [Beutenbergia cavernae 
DSM 12333]
 gi|229564659|gb|ACQ78510.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Beutenbergia 
cavernae DSM 12333]
Length=167

 Score =  179 bits (453),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 96/167 (58%), Positives = 121/167 (73%), Gaps = 3/167 (1%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLF  70
            EA LMRAL+D HA  L RY + L  +    +DVVQETL+RAW+ PEV+ +T R ARAWLF
Sbjct  4    EALLMRALHDAHAPALRRYVVALGVEGGGVDDVVQETLVRAWRKPEVLDETQRSARAWLF  63

Query  71   TVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAV  130
            TVAR+++IDE R+AR R+   + D    P+ +  DE +  LD+ L+ADALA L+ EHR+V
Sbjct  64   TVARHLVIDEHRTARRRHERPAWD---PPDVAVDDESDHLLDQWLVADALAALTPEHRSV  120

Query  131  IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            + R+YY GWS AQIA+  GI  GTVKSRLHY +RALRL LQE GVTR
Sbjct  121  VVRAYYGGWSVAQIASAAGIPAGTVKSRLHYGLRALRLALQEKGVTR  167


>gi|323359468|ref|YP_004225864.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24 
homolog [Microbacterium testaceum StLB037]
 gi|323275839|dbj|BAJ75984.1| DNA-directed RNA polymerase specialized sigma subunit, sigma24 
homolog [Microbacterium testaceum StLB037]
Length=168

 Score =  177 bits (449),  Expect = 5e-43, Method: Compositional matrix adjust.
 Identities = 94/167 (57%), Positives = 118/167 (71%), Gaps = 3/167 (1%)

Query  11   EAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLF  70
            + A + ALYD HAA +WRY + LTGD A A+DVVQETLLRAW+ P ++ D     R+W+F
Sbjct  5    DHARLTALYDAHAAPVWRYVVSLTGDHAGADDVVQETLLRAWRSPRIMSDDPGSLRSWMF  64

Query  71   TVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAV  130
            TVARN++IDE RSAR R+ +   +    P+    D+ +A  D LL+ +ALA L+ +HRAV
Sbjct  65   TVARNLVIDEARSARRRHELPVDE---VPDSGRDDDTDAMFDALLVEEALATLTPDHRAV  121

Query  131  IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            I  +YY G S AQ A +LGI  GTVKSRLHYAVRALRL LQE GVTR
Sbjct  122  IVSAYYGGRSVAQTAEELGIPAGTVKSRLHYAVRALRLALQERGVTR  168


>gi|170781282|ref|YP_001709614.1| putative RNA polymerase sigma factor [Clavibacter michiganensis 
subsp. sepedonicus]
 gi|169155850|emb|CAQ00975.1| putative RNA polymerase sigma factor [Clavibacter michiganensis 
subsp. sepedonicus]
Length=168

 Score =  171 bits (432),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 94/165 (57%), Positives = 114/165 (70%), Gaps = 3/165 (1%)

Query  13   ALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            A MRAL+D HA  L RYALRLTGD A AEDVVQE LLRAW+ P ++ +    AR WLFTV
Sbjct  7    ARMRALHDAHAPALQRYALRLTGDPALAEDVVQEALLRAWRSPAILAEDDESARRWLFTV  66

Query  73   ARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQ  132
             RN++ID+RRSA +R     TD    PE    D  +A +DRLL+A+ALA LSAEHR  + 
Sbjct  67   VRNLVIDDRRSA-WRGRETPTDT--LPEDPVADASDAIIDRLLVAEALASLSAEHRRAVV  123

Query  133  RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
              Y+ G S A+ A   G+  GT+KSRLHYA++ALRL LQE GVTR
Sbjct  124  SCYHLGRSVAETAEREGVPPGTIKSRLHYALKALRLALQERGVTR  168


>gi|269958057|ref|YP_003327846.1| ECF subfamily RNA polymerase sigma-24 subunit [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269306738|gb|ACZ32288.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Xylanimonas 
cellulosilytica DSM 15894]
Length=170

 Score =  167 bits (423),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 90/164 (55%), Positives = 113/164 (69%), Gaps = 3/164 (1%)

Query  13   ALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            A++ A++  HAA L RY   LT D  Q  DVVQETLLRAW+HPEV+       RAWLFTV
Sbjct  9    AVLAAVHGTHAAALHRYVRHLTSDEEQTRDVVQETLLRAWRHPEVLERPEDSVRAWLFTV  68

Query  73   ARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQ  132
            A+++++D+RRSAR  +       +  PE+  PD     LD  L+ADALA LSAEHRAV+ 
Sbjct  69   AKHLVVDQRRSARHAH---ERTTAVVPERPEPDRTQQVLDAWLVADALAGLSAEHRAVVV  125

Query  133  RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
             +YY G S A++A DL I  GTVKSR+HYA+RALRL+LQE GVT
Sbjct  126  GAYYGGRSVAELADDLEIPPGTVKSRMHYALRALRLSLQEKGVT  169


>gi|148271469|ref|YP_001221030.1| RNA polymerase ECF-subfamily sigma factor [Clavibacter michiganensis 
subsp. michiganensis NCPPB 382]
 gi|147829399|emb|CAN00312.1| putative RNA polymerase ECF-subfamily sigma factor [Clavibacter 
michiganensis subsp. michiganensis NCPPB 382]
Length=168

 Score =  167 bits (423),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 92/165 (56%), Positives = 113/165 (69%), Gaps = 3/165 (1%)

Query  13   ALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            A MRAL+D HA  L RYALRLTGD A AEDVVQE LLRAW+ P ++ +    AR WLFTV
Sbjct  7    ARMRALHDAHAPALQRYALRLTGDPALAEDVVQEALLRAWRSPAILAEDDESARRWLFTV  66

Query  73   ARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQ  132
             RN++ID+RRSA +R     TD    PE    D  +A +DRLL+A+ALA LSAEHR  + 
Sbjct  67   VRNLVIDDRRSA-WRGRETPTDV--LPEDPVADASDAIIDRLLVAEALASLSAEHRRAVV  123

Query  133  RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
              Y+ G +  + A   G+  GT+KSRLHYA++ALRL LQE GVTR
Sbjct  124  SCYHLGRTVVETAEREGVPPGTIKSRLHYALKALRLALQERGVTR  168


>gi|296131341|ref|YP_003638591.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Cellulomonas 
flavigena DSM 20109]
 gi|296023156|gb|ADG76392.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Cellulomonas 
flavigena DSM 20109]
Length=166

 Score =  167 bits (422),  Expect = 8e-40, Method: Compositional matrix adjust.
 Identities = 93/164 (57%), Positives = 115/164 (71%), Gaps = 4/164 (2%)

Query  13   ALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            AL+RA +  HAAVL RY +RLT D A+A DVVQETLLRAW+HPEV+       RAWLFTV
Sbjct  6    ALLRATHATHAAVLHRYVVRLT-DPARAPDVVQETLLRAWRHPEVLTRPEPSVRAWLFTV  64

Query  73   ARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQ  132
            ARN+++D+ RSA  R+    T     P+    D   A LDR L+ADALA L+ +HRA + 
Sbjct  65   ARNLVVDDARSAHRRH---ETPSDAPPDTPGDDGTQAVLDRWLVADALAALTPDHRADVV  121

Query  133  RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
             +YYR  S A++A +L +A GTVKSRLHYA+RALRL LQE GVT
Sbjct  122  GAYYRRRSVAELAAELDVAPGTVKSRLHYALRALRLALQERGVT  165


>gi|152965766|ref|YP_001361550.1| ECF family RNA polymerase sigma-24 subunit [Kineococcus radiotolerans 
SRS30216]
 gi|151360283|gb|ABS03286.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kineococcus 
radiotolerans SRS30216]
Length=168

 Score =  163 bits (412),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 87/168 (52%), Positives = 110/168 (66%), Gaps = 3/168 (1%)

Query  10   AEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            A+  L+RAL+DEHA  LW Y + LTGD A A DVVQETLLRAW+HPE +       R WL
Sbjct  4    ADEELVRALHDEHAGALWSYVVSLTGDRASAHDVVQETLLRAWRHPESLDPARGSTRGWL  63

Query  70   FTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRA  129
            FTVAR ++ID+ RSAR R     +  +  P++   DE    L + ++  AL +LS EHRA
Sbjct  64   FTVARRLVIDDWRSARNRR---ESVHADVPDRVVVDESEQVLQQWVVTQALTRLSPEHRA  120

Query  130  VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            V+   Y+RG S A+ A  L I EGTVKSR HYA+  LRL LQE+GV+R
Sbjct  121  VLGECYFRGRSVAEAARTLAIPEGTVKSRTHYALMNLRLALQEMGVSR  168


>gi|300784637|ref|YP_003764928.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis 
mediterranei U32]
 gi|299794151|gb|ADJ44526.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis 
mediterranei U32]
Length=170

 Score =  162 bits (411),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 95/169 (57%), Positives = 119/169 (71%), Gaps = 4/169 (2%)

Query  10   AEAALMRALYDEHAAVLWRYALRLT-GDAAQAEDVVQETLLRAWQHPEVIGDTARPARAW  68
            AE ALMRAL++EHA  LW YAL LT GD  +AEDVVQETLLRAW+ P V+  +   ARAW
Sbjct  5    AEEALMRALHEEHATALWSYALHLTSGDRIRAEDVVQETLLRAWRSPAVLDQSQGSARAW  64

Query  69   LFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHR  128
            LFTVAR + ID  RSA  R+ V  TD+   P++   D  + A+   L+A+ALA+LS  HR
Sbjct  65   LFTVARRIAIDGWRSASARSEV-MTDRP--PDRVVADGTDRAVQGWLVAEALAELSERHR  121

Query  129  AVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
             V+   Y++G+S A  A  LG+AEGTVKSR HYA+RALRL L+E GVT+
Sbjct  122  EVLVLCYFQGYSVADAALRLGVAEGTVKSRTHYALRALRLVLEERGVTQ  170


>gi|326331604|ref|ZP_08197894.1| RNA polymerase sigma-70 factor, ECF subfamily [Nocardioidaceae 
bacterium Broad-1]
 gi|325950860|gb|EGD42910.1| RNA polymerase sigma-70 factor, ECF subfamily [Nocardioidaceae 
bacterium Broad-1]
Length=172

 Score =  161 bits (408),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 92/171 (54%), Positives = 116/171 (68%), Gaps = 4/171 (2%)

Query  9    AAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAW  68
             AE  L+ A++D H+  L+RY +R TGDA +A DVVQETLLRAW++PEV+       RAW
Sbjct  2    GAEDELLVAVHDAHSEALYRYVVRRTGDAEEARDVVQETLLRAWRNPEVLQRPDDGVRAW  61

Query  69   LFTVARNMIIDERRSARFRNVVGS---TDQSGTPEQSTPDEVNAALDRLLIADALAQLSA  125
            LFT ARN++ID+ RSAR +    +    DQ    +QS  D   A LD  ++ADAL  LSA
Sbjct  62   LFTTARNLVIDDLRSARRKREYAAETLPDQWCV-DQSRADHTQAVLDSWVVADALLALSA  120

Query  126  EHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            EHRAV+  +YY G S A++A +L I  GTVKSRLHY +RALRL LQE GVT
Sbjct  121  EHRAVVIGAYYGGRSVAELARELDIPPGTVKSRLHYGLRALRLALQEKGVT  171


>gi|258651324|ref|YP_003200480.1| ECF subfamily RNA polymerase sigma-24 subunit [Nakamurella multipartita 
DSM 44233]
 gi|258554549|gb|ACV77491.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nakamurella 
multipartita DSM 44233]
Length=193

 Score =  160 bits (405),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 85/168 (51%), Positives = 113/168 (68%), Gaps = 4/168 (2%)

Query  11   EAALMRALYDEHAAVLWRYALRLTG-DAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            +AAL++AL+DEHA  LW + L LTG D ++AEDVVQETL RAW+ P V+      AR WL
Sbjct  29   DAALLKALHDEHATALWHFVLHLTGGDRSRAEDVVQETLFRAWRRPAVLAQQQSSARGWL  88

Query  70   FTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRA  129
            FTVARN+++D  R+ R R    +T     PE   PD  + AL  +++A+A+ +LS +H A
Sbjct  89   FTVARNIVVDGWRADRRRP---TTSTESVPEPLQPDATDRALQAMVVAEAMQRLSHDHGA  145

Query  130  VIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            V+   YYRG + AQ A  L I  GTVKSRLHYA+ ALRL L+E+GV +
Sbjct  146  VLLECYYRGCTAAQAAARLDIPIGTVKSRLHYALHALRLVLEEMGVVK  193


>gi|269124861|ref|YP_003298231.1| ECF subfamily RNA polymerase sigma-24 subunit [Thermomonospora 
curvata DSM 43183]
 gi|268309819|gb|ACY96193.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermomonospora 
curvata DSM 43183]
Length=185

 Score =  158 bits (400),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 92/176 (53%), Positives = 119/176 (68%), Gaps = 7/176 (3%)

Query  3    RVSG-AAAAEAALMRALYDEHAAVLWRYALRLTG-DAAQAEDVVQETLLRAWQHPEVIGD  60
            RV+G    A+  L+R+LY EH   L  YALRLTG D  QAED+VQETLLRAW+HPE +  
Sbjct  12   RVTGVGPTADERLLRSLYAEHGGPLLGYALRLTGGDRQQAEDIVQETLLRAWRHPEAL--  69

Query  61   TARPARAWLFTVARNMIIDERRSARFRNV-VGSTDQSGTPEQSTPDEVNAALDRLLIADA  119
            T RP R WLFTVARN+ +D  R+ R R    G  + +  P  +  D+++ AL+   +A+A
Sbjct  70   TGRPVRPWLFTVARNLAVDAHRARRSRPPETGLHEYAALPAGN--DDIDRALESWTVAEA  127

Query  120  LAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGV  175
            LA LS +HRAVI  +YYRG S A+ A  LGI  GTVKSR +YA+RAL+L L+E G+
Sbjct  128  LADLSPQHRAVILETYYRGRSVAEAAQVLGIPPGTVKSRTYYALRALKLALEERGL  183


>gi|119715911|ref|YP_922876.1| sigma-70 region 2 domain-containing protein [Nocardioides sp. 
JS614]
 gi|119536572|gb|ABL81189.1| sigma-70 region 2 domain protein [Nocardioides sp. JS614]
Length=174

 Score =  158 bits (399),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 88/165 (54%), Positives = 113/165 (69%), Gaps = 3/165 (1%)

Query  13   ALMRALYDEHAAVLWRYALRLTG-DAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFT  71
            ALM+ L+DEHAA LW Y LRLTG D A+AEDVVQETLLRAW++   + +     RAWLF 
Sbjct  11   ALMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEAHGSVRAWLFR  70

Query  72   VARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVI  131
            VARN++IDE R+ R+++ +   D      +S  D  +  L   ++ DAL +LSAEHRAV+
Sbjct  71   VARNIVIDEWRTKRWQSEIAVADVPDGAGES--DRTDQLLLSWVVGDALTRLSAEHRAVL  128

Query  132  QRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
               YYRG S A+ +  LG+ EGTVKSR HYA+RALRL L+E GV 
Sbjct  129  LECYYRGQSVAEASRRLGVPEGTVKSRTHYALRALRLALEESGVV  173


>gi|290560169|pdb|3HUG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560171|pdb|3HUG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560173|pdb|3HUG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 7 more sequence titles
 
gi|290560175|pdb|3HUG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560177|pdb|3HUG|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560179|pdb|3HUG|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560181|pdb|3HUG|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560183|pdb|3HUG|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560185|pdb|3HUG|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
 gi|290560187|pdb|3HUG|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma 
Factor Rsla In Complex With -35 Promoter Binding Domain 
Of Sigl
Length=92

 Score =  158 bits (399),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)

Query  99   PEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSR  158
            PEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSR
Sbjct  14   PEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSR  73

Query  159  LHYAVRALRLTLQELGVTR  177
            LHYAVRALRLTLQELGVTR
Sbjct  74   LHYAVRALRLTLQELGVTR  92


>gi|334338337|ref|YP_004543489.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Isoptericola 
variabilis 225]
 gi|334108705|gb|AEG45595.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Isoptericola 
variabilis 225]
Length=167

 Score =  157 bits (396),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 85/163 (53%), Positives = 110/163 (68%), Gaps = 3/163 (1%)

Query  14   LMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVA  73
            L+ A++  HA  L RY  RL  D A+A+DVVQE+LLR W+H EV+       RAWLFTVA
Sbjct  7    LLEAIHAAHAGALHRYVARLVRDDAEAQDVVQESLLRLWKHTEVLERPEESVRAWLFTVA  66

Query  74   RNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQR  133
            R++++D  RSAR  +   +TD    PE   PD   A LD  L+ADAL ++S EHRAV+  
Sbjct  67   RHLVVDRLRSARHAHE-RTTDH--VPETPEPDATQAVLDAWLVADALVEISPEHRAVVVG  123

Query  134  SYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            +YYRG + A++A +  +  GTVKSRLHYA+RALRL LQE GVT
Sbjct  124  AYYRGRTVAELAEEQDVPPGTVKSRLHYALRALRLALQEKGVT  166


>gi|271962450|ref|YP_003336646.1| ECF subfamily RNA polymerase sigma-24 subunit [Streptosporangium 
roseum DSM 43021]
 gi|270505625|gb|ACZ83903.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Streptosporangium 
roseum DSM 43021]
Length=183

 Score =  156 bits (395),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 86/173 (50%), Positives = 116/173 (68%), Gaps = 6/173 (3%)

Query  4    VSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTAR  63
            VS A  A+  L+RAL+DEH   L+ Y LRLTGD  +AEDVVQETLLRAW+HP+ +  + R
Sbjct  14   VSQAGTADEQLVRALFDEHGGPLYGYVLRLTGDPGRAEDVVQETLLRAWRHPDAL--SGR  71

Query  64   PARAWLFTVARNMIIDERRSARFRNV-VGSTDQSGTPEQSTPDEVNAALDRLLIADALAQ  122
            P RAWLFTVARN+++D+ R+ + R    G+   +  P     DE+  A++   +A+ALA 
Sbjct  72   PIRAWLFTVARNLVVDQHRARKSRPPETGAEALAVLPAD---DELERAVESWAVAEALAT  128

Query  123  LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGV  175
            L  EHR V+   YY+G S  + A  LGI  GTVKSR +YA+RAL+L L+E G+
Sbjct  129  LRPEHREVLAEVYYQGKSVKEAAEALGIPAGTVKSRTYYALRALKLALEERGL  181


>gi|340526060|gb|AEK41265.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis 
mediterranei S699]
Length=161

 Score =  156 bits (395),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 91/164 (56%), Positives = 115/164 (71%), Gaps = 4/164 (2%)

Query  15   MRALYDEHAAVLWRYALRLT-GDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVA  73
            MRAL++EHA  LW YAL LT GD  +AEDVVQETLLRAW+ P V+  +   ARAWLFTVA
Sbjct  1    MRALHEEHATALWSYALHLTSGDRIRAEDVVQETLLRAWRSPAVLDQSQGSARAWLFTVA  60

Query  74   RNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQR  133
            R + ID  RSA  R+ V  TD+   P++   D  + A+   L+A+ALA+LS  HR V+  
Sbjct  61   RRIAIDGWRSASARSEV-MTDRP--PDRVVADGTDRAVQGWLVAEALAELSERHREVLVL  117

Query  134  SYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
             Y++G+S A  A  LG+AEGTVKSR HYA+RALRL L+E GVT+
Sbjct  118  CYFQGYSVADAALRLGVAEGTVKSRTHYALRALRLVLEERGVTQ  161


>gi|332670413|ref|YP_004453421.1| ECF subfamily RNA polymerase sigma-24 subunit [Cellulomonas fimi 
ATCC 484]
 gi|332339451|gb|AEE46034.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Cellulomonas 
fimi ATCC 484]
Length=168

 Score =  155 bits (393),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 90/164 (55%), Positives = 116/164 (71%), Gaps = 3/164 (1%)

Query  13   ALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            AL++AL+  +A  L  Y +RLTGD   A+DVVQET++RAW+HPEV+      ARAWL+TV
Sbjct  7    ALLQALHTSYARPLHHYVVRLTGDHELAQDVVQETMVRAWRHPEVLERDEDAARAWLYTV  66

Query  73   ARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQ  132
            ARN++I + R +  R     TD+  TPE++ PD   A LD  L+ DALAQLSAEHRAV+ 
Sbjct  67   ARNLVI-DDRRSARRAREHVTDR--TPERAGPDGTQAVLDAWLVGDALAQLSAEHRAVVV  123

Query  133  RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
             +YY G S A++A +  I +GTVKSRLHY +RALRL LQE GVT
Sbjct  124  GAYYGGRSVAELAQEHQIPQGTVKSRLHYGLRALRLALQERGVT  167


>gi|117927268|ref|YP_871819.1| RNA polymerase sigma factor SigL [Acidothermus cellulolyticus 
11B]
 gi|117647731|gb|ABK51833.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Acidothermus 
cellulolyticus 11B]
Length=177

 Score =  154 bits (389),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 115/174 (67%), Gaps = 7/174 (4%)

Query  8    AAAEAALMRALYDEHAAVLWRYALRLT-GDAAQAEDVVQETLLRAWQHPEVIGDTARPAR  66
            A A+ AL+RALY++H  VL+ Y LRL  GD  +AED+VQET++RAW+HPE +       R
Sbjct  4    AGADEALVRALYEQHGRVLFGYVLRLVDGDRGRAEDIVQETIIRAWRHPEALARDPHAIR  63

Query  67   AWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLL----IADALAQ  122
             WLFTVARN+++D  R+ R R      +  G    +  D+V AA+DR L    +ADA+  
Sbjct  64   PWLFTVARNLVVDAHRAVRARPPEAGPEGLGV--VAAEDDVVAAVDRALEAWQVADAINA  121

Query  123  LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            LS +HR V+  +YYRG S A+ A  LGI  GTVKSR +YA+RALRL L+E GVT
Sbjct  122  LSPDHRRVLIETYYRGRSVAEAAAVLGIPPGTVKSRTYYALRALRLILEERGVT  175


>gi|296268445|ref|YP_003651077.1| ECF subfamily RNA polymerase sigma-24 [Thermobispora bispora 
DSM 43833]
 gi|296091232|gb|ADG87184.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Thermobispora 
bispora DSM 43833]
Length=192

 Score =  153 bits (386),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 86/171 (51%), Positives = 111/171 (65%), Gaps = 5/171 (2%)

Query  5    SGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARP  64
            +GA   E  L+RAL+  HA  L+ YALRLTGD  +AEDVVQETLLRAW+HP V+    RP
Sbjct  25   TGAGTGEE-LVRALFAHHAGPLYGYALRLTGDPGKAEDVVQETLLRAWRHPAVL--EGRP  81

Query  65   ARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLS  124
             RAWLFTVARN+++D+ R+ + R     T           DE+  A++   IA+A+A L 
Sbjct  82   VRAWLFTVARNLVVDQHRARQARPQ--ETGDEALARVPADDELERAVESWEIAEAIASLR  139

Query  125  AEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGV  175
             EHR V+   YYRG S  + A  LGI  GTVKSR +YA+RAL+L L+E G+
Sbjct  140  PEHRDVLLEVYYRGKSVKEAAEALGIPPGTVKSRTYYALRALKLALEERGL  190


>gi|84495421|ref|ZP_00994540.1| RNA polymerase sigma-70 factor [Janibacter sp. HTCC2649]
 gi|84384914|gb|EAQ00794.1| RNA polymerase sigma-70 factor [Janibacter sp. HTCC2649]
Length=162

 Score =  152 bits (385),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 86/163 (53%), Positives = 113/163 (70%), Gaps = 5/163 (3%)

Query  15   MRALYDEHAAVLWRYALRLTG-DAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVA  73
            M  L+DEHAA LW Y L LTG D A+AEDVVQETLLRAW++ + + ++    RAWLFTVA
Sbjct  1    MTQLHDEHAAALWGYCLSLTGRDHARAEDVVQETLLRAWRNHDRLEESRGSVRAWLFTVA  60

Query  74   RNMIIDERRSARFRNVVGSTDQSGTPEQSTP-DEVNAALDRLLIADALAQLSAEHRAVIQ  132
            RN++IDE R+ R ++ +   +    PE   P D+ +  L   ++ADAL  LS +HRAV+ 
Sbjct  61   RNIVIDEWRTKRTQSELSVAE---VPEVREPGDQTDQMLLSWVVADALLGLSPDHRAVLV  117

Query  133  RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGV  175
              Y++G S AQ A  LGI +GTVKSR HYA++ALRL LQE+GV
Sbjct  118  ECYFKGASVAQAAHRLGIPDGTVKSRTHYALQALRLRLQEMGV  160


>gi|302864919|ref|YP_003833556.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC 
27029]
 gi|315501204|ref|YP_004080091.1| ECF subfamily RNA polymerase sigma-24 subunit [Micromonospora 
sp. L5]
 gi|302567778|gb|ADL43980.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora 
aurantiaca ATCC 27029]
 gi|315407823|gb|ADU05940.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Micromonospora 
sp. L5]
Length=189

 Score =  148 bits (373),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 88/170 (52%), Positives = 112/170 (66%), Gaps = 8/170 (4%)

Query  11   EAALMRALYDEHAAVLWRYALRL-TGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            +A L+RAL+DEHA  L+ +ALRL  GD  +AED+VQETLLRAW+HPE +       RAWL
Sbjct  23   DAQLLRALHDEHADALYAHALRLVNGDRPRAEDLVQETLLRAWRHPESLDPRRGSVRAWL  82

Query  70   FTVARNMIID--ERRSARFRNVVGSTDQSGTPEQS-TPDEVNAALDRLLIADALAQLSAE  126
            FT ARN+ ID   RRSAR    VG       PE + T DE   A++   +A+AL +LS  
Sbjct  83   FTTARNLAIDAWRRRSAR----VGEVYTDELPETAETVDETERAVEAWTVAEALNRLSPT  138

Query  127  HRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            HR V+   +Y+G S A+ A  LG+  GTVKSR HYA+R+LRL L E+GVT
Sbjct  139  HREVLVECFYQGRSVAEAAARLGVPPGTVKSRTHYALRSLRLALAEMGVT  188


>gi|238062228|ref|ZP_04606937.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 
39149]
 gi|237884039|gb|EEP72867.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 
39149]
Length=164

 Score =  147 bits (372),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 85/166 (52%), Positives = 111/166 (67%), Gaps = 6/166 (3%)

Query  14   LMRALYDEHAAVLWRYALRL-TGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            ++RAL+DEHA  L+ +ALRL  GD  +AED+VQETLLRAW+HPE +  T    RAWLFT 
Sbjct  1    MLRALHDEHADALYAHALRLVNGDRTRAEDLVQETLLRAWRHPESLDPTRGSVRAWLFTT  60

Query  73   ARNMIID--ERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAV  130
            ARN+ ID   RRS R   +   TD+   P   T DE   A++   +A+AL +LS  HR V
Sbjct  61   ARNLAIDAWRRRSTRVGEIY--TDELPEP-PDTVDEAERAVEAWTVAEALNRLSPTHREV  117

Query  131  IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            +   +Y+G S A+ A+ LG+  GTVKSR HYA+R+LRL L E+GVT
Sbjct  118  LIECFYQGRSVAEAASRLGVPPGTVKSRTHYALRSLRLALAEMGVT  163


>gi|163840316|ref|YP_001624721.1| RNA polymerase sigma factor [Renibacterium salmoninarum ATCC 
33209]
 gi|162953792|gb|ABY23307.1| RNA polymerase sigma factor [Renibacterium salmoninarum ATCC 
33209]
Length=413

 Score =  146 bits (369),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 81/161 (51%), Positives = 101/161 (63%), Gaps = 3/161 (1%)

Query  5    SGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARP  64
            S  A  +  ++  L+  HAA L R+  RLTGD A AEDV QETL RAWQ P ++      
Sbjct  8    SDHAEVQEEMLCTLHGAHAAELGRFVNRLTGDHAYAEDVTQETLFRAWQRPAILERPEAA  67

Query  65   ARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLS  124
             RAWLFTVARN+++D+ RSAR R+ VG+      PEQ   D  +  LD  L+ DALA LS
Sbjct  68   VRAWLFTVARNLVVDDWRSARRRHEVGA---ESPPEQHQADATDRVLDSWLVTDALACLS  124

Query  125  AEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRA  165
             EHR V+   YYR  S  +I+  L I EGTVKSR+HYA+RA
Sbjct  125  LEHREVLVHGYYRALSVREISQTLDIPEGTVKSRMHYALRA  165


>gi|330465220|ref|YP_004402963.1| RNA polymerase, sigma-24 subunit, ecf subfamily protein [Verrucosispora 
maris AB-18-032]
 gi|328808191|gb|AEB42363.1| RNA polymerase, sigma-24 subunit, ecf subfamily protein [Verrucosispora 
maris AB-18-032]
Length=192

 Score =  146 bits (369),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 84/169 (50%), Positives = 112/169 (67%), Gaps = 6/169 (3%)

Query  11   EAALMRALYDEHAAVLWRYALRL-TGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWL  69
            +A L+RAL+DEHA  L+ +ALRL  GD  +AED+VQETLLRAW+HPE +       RAWL
Sbjct  26   DADLLRALHDEHADALYAHALRLVNGDRQRAEDLVQETLLRAWRHPESLDPRRGSVRAWL  85

Query  70   FTVARNMIID--ERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEH  127
            FT ARN+ ID   RRS R   +   TD+   P +   DE   A++   +A+AL +LS  H
Sbjct  86   FTTARNLAIDAWRRRSTRVGEIY--TDELPEPPEVV-DETERAVEAWTVAEALNRLSPSH  142

Query  128  RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT  176
            R V+   +Y+G S ++ A+ LG+  GTVKSR HYA+R+LRL L E+GVT
Sbjct  143  RDVLVECFYQGRSVSEAASRLGVPPGTVKSRTHYALRSLRLVLAEMGVT  191


>gi|291298050|ref|YP_003509328.1| ECF subfamily RNA polymerase sigma-24 subunit [Stackebrandtia 
nassauensis DSM 44728]
 gi|290567270|gb|ADD40235.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Stackebrandtia 
nassauensis DSM 44728]
Length=185

 Score =  143 bits (360),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 83/176 (48%), Positives = 112/176 (64%), Gaps = 6/176 (3%)

Query  4    VSGAAAAEAALMRALYDEHAAVLWRYALRLTG-DAAQAEDVVQETLLRAWQHPEVIGDTA  62
            +S + +A+  L+ AL+ EHA  LWRYA RLTG D A+A+D VQETLLRAW++  V+  + 
Sbjct  10   LSASMSADEQLIHALHAEHADALWRYACRLTGGDEARAQDAVQETLLRAWRNSRVLASSP  69

Query  63   RPARAWLFTVARNMIIDERRSARFR-NVVGSTDQSGTPEQSTPDEVNAALDRLLIADALA  121
              AR WL+   R+ +IDE R  + R  V+  T     PE+   D V++AL  LL+ +AL 
Sbjct  70   DHARRWLYRTLRSRVIDEWRYRKNRPEVITDT----LPERHAADHVDSALQGLLVVEALR  125

Query  122  QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR  177
            +LS  HR V+   +Y G S  + A  L I  GTVKSRLHYA+RAL+L L+E GV R
Sbjct  126  KLSPAHREVLMECFYGGRSVNEAAEKLAIPAGTVKSRLHYALRALKLALEEAGVVR  181


>gi|159039958|ref|YP_001539211.1| LuxR family transcriptional regulator [Salinispora arenicola 
CNS-205]
 gi|157918793|gb|ABW00221.1| transcriptional regulator, LuxR family [Salinispora arenicola 
CNS-205]
Length=165

 Score =  143 bits (360),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 83/165 (51%), Positives = 108/165 (66%), Gaps = 6/165 (3%)

Query  14   LMRALYDEHAAVLWRYALRL-TGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV  72
            ++RAL+DEHA  L+ +ALRL  GD  +AED+VQETLLRAW+HPE +       R WLFT 
Sbjct  1    MLRALHDEHADALYAHALRLVNGDRQRAEDLVQETLLRAWRHPESLDPRRGSVRGWLFTT  60

Query  73   ARNMIID--ERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAV  130
            ARN+ ID   RRS R   V   TD+   P ++  DE   A++   +A+AL +LS  HR V
Sbjct  61   ARNLAIDAWRRRSVRVGEVY--TDELPEPPEAV-DEAERAVEAWTVAEALNRLSPTHREV  117

Query  131  IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGV  175
            +   +Y+G S A+ A  LGI  GTVKSR HYA+R+LRL L E+GV
Sbjct  118  LVECFYQGRSVAEAAARLGIPPGTVKSRTHYALRSLRLVLAEMGV  162



Lambda     K      H
   0.320    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 152280848256




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40