BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0736
Length=250
Score E
Sequences producing significant alignments: (Bits) Value
gi|15607876|ref|NP_215250.1| hypothetical protein Rv0736 [Mycoba... 493 1e-137
gi|294996219|ref|ZP_06801910.1| hypothetical protein Mtub2_17371... 492 2e-137
gi|339630805|ref|YP_004722447.1| hypothetical protein MAF_07460 ... 491 3e-137
gi|340625757|ref|YP_004744209.1| hypothetical protein MCAN_07411... 490 9e-137
gi|308371745|ref|ZP_07426081.2| conserved membrane protein [Myco... 489 2e-136
gi|240167751|ref|ZP_04746410.1| hypothetical protein MkanA1_0044... 311 5e-83
gi|118616609|ref|YP_904941.1| hypothetical protein MUL_0832 [Myc... 310 1e-82
gi|296168600|ref|ZP_06850404.1| probable transmembrane anti-sigm... 301 7e-80
gi|183981094|ref|YP_001849385.1| hypothetical protein MMAR_1074 ... 296 1e-78
gi|342861835|ref|ZP_08718480.1| hypothetical protein MCOL_23215 ... 281 9e-74
gi|254822309|ref|ZP_05227310.1| hypothetical protein MintA_20409... 275 3e-72
gi|296164282|ref|ZP_06846868.1| conserved hypothetical protein [... 271 8e-71
gi|41410300|ref|NP_963136.1| hypothetical protein MAP4202 [Mycob... 271 8e-71
gi|118462268|ref|YP_883565.1| hypothetical protein MAV_4430 [Myc... 271 9e-71
gi|290560170|pdb|3HUG|B Chain B, Crystal Structure Of Mycobacter... 219 3e-55
gi|333990403|ref|YP_004523017.1| hypothetical protein JDM601_176... 198 6e-49
gi|108798023|ref|YP_638220.1| putative transmembrane anti-sigma ... 155 6e-36
gi|126433685|ref|YP_001069376.1| putative transmembrane anti-sig... 154 1e-35
gi|118472236|ref|YP_885869.1| hypothetical protein MSMEG_1487 [M... 153 2e-35
gi|120402362|ref|YP_952191.1| putative transmembrane anti-sigma ... 146 3e-33
gi|145225594|ref|YP_001136272.1| putative transmembrane anti-sig... 140 2e-31
gi|315445947|ref|YP_004078826.1| hypothetical protein Mspyr1_443... 134 1e-29
gi|54027487|ref|YP_121729.1| hypothetical protein nfa55130 [Noca... 102 5e-20
gi|254776865|ref|ZP_05218381.1| hypothetical protein MaviaA2_196... 101 9e-20
gi|226360395|ref|YP_002778173.1| hypothetical protein ROP_09810 ... 98.2 1e-18
gi|111018270|ref|YP_701242.1| hypothetical protein RHA1_ro01260 ... 94.4 1e-17
gi|163840316|ref|YP_001624721.1| RNA polymerase sigma factor [Re... 93.2 3e-17
gi|169629250|ref|YP_001702899.1| hypothetical protein MAB_2164 [... 91.7 9e-17
gi|284028826|ref|YP_003378757.1| putative transmembrane anti-sig... 89.0 6e-16
gi|119715912|ref|YP_922877.1| hypothetical protein Noca_1677 [No... 88.6 8e-16
gi|323359469|ref|YP_004225865.1| transmembrane transcriptional r... 88.2 1e-15
gi|170781283|ref|YP_001709615.1| hypothetical protein CMS_0859 [... 86.7 3e-15
gi|84495420|ref|ZP_00994539.1| hypothetical protein JNB_11479 [J... 85.9 5e-15
gi|148271470|ref|YP_001221031.1| hypothetical protein CMM_0291 [... 81.3 1e-13
gi|334338336|ref|YP_004543488.1| transmembrane anti-sigma factor... 79.7 4e-13
gi|229818747|ref|YP_002880273.1| hypothetical protein Bcav_0246 ... 79.3 4e-13
gi|330465221|ref|YP_004402964.1| putative transmembrane anti-sig... 77.8 1e-12
gi|300784638|ref|YP_003764929.1| transmembrane anti-sigma factor... 74.7 1e-11
gi|345015560|ref|YP_004817914.1| hypothetical protein Strvi_8314... 70.5 2e-10
gi|152965767|ref|YP_001361551.1| hypothetical protein Krad_1801 ... 69.3 4e-10
gi|238062229|ref|ZP_04606938.1| transmembrane anti-sigma factor ... 69.3 6e-10
gi|315501205|ref|YP_004080092.1| transmembrane anti-sigma factor... 68.9 6e-10
gi|333990405|ref|YP_004523019.1| dioxygenase [Mycobacterium sp. ... 68.9 7e-10
gi|302864920|ref|YP_003833557.1| putative transmembrane anti-sig... 68.2 1e-09
gi|326331605|ref|ZP_08197895.1| putative transmembrane anti-sigm... 67.8 1e-09
gi|296131340|ref|YP_003638590.1| putative transmembrane anti-sig... 67.4 2e-09
gi|332670414|ref|YP_004453422.1| putative transmembrane anti-sig... 67.4 2e-09
gi|258651325|ref|YP_003200481.1| transmembrane anti-sigma factor... 67.4 2e-09
gi|302544961|ref|ZP_07297303.1| putative membrane protein [Strep... 66.2 4e-09
gi|269958056|ref|YP_003327845.1| putative transmembrane anti-sig... 64.3 1e-08
>gi|15607876|ref|NP_215250.1| hypothetical protein Rv0736 [Mycobacterium tuberculosis H37Rv]
gi|15840143|ref|NP_335180.1| hypothetical protein MT0760 [Mycobacterium tuberculosis CDC1551]
gi|31791922|ref|NP_854415.1| hypothetical protein Mb0757 [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=250
Score = 493 bits (1269), Expect = 1e-137, Method: Compositional matrix adjust.
Identities = 250/250 (100%), Positives = 250/250 (100%), Gaps = 0/250 (0%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA
Sbjct 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA
Sbjct 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
Query 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC
Sbjct 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
Query 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD
Sbjct 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
Query 241 TGQVLLQRSL 250
TGQVLLQRSL
Sbjct 241 TGQVLLQRSL 250
>gi|294996219|ref|ZP_06801910.1| hypothetical protein Mtub2_17371 [Mycobacterium tuberculosis
210]
Length=250
Score = 492 bits (1266), Expect = 2e-137, Method: Compositional matrix adjust.
Identities = 249/250 (99%), Positives = 250/250 (100%), Gaps = 0/250 (0%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA
Sbjct 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA
Sbjct 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
Query 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC
Sbjct 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
Query 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSI+TPVDQIAAVQVVAAD
Sbjct 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSIATPVDQIAAVQVVAAD 240
Query 241 TGQVLLQRSL 250
TGQVLLQRSL
Sbjct 241 TGQVLLQRSL 250
>gi|339630805|ref|YP_004722447.1| hypothetical protein MAF_07460 [Mycobacterium africanum GM041182]
gi|339330161|emb|CCC25818.1| putative conserved membrane protein [Mycobacterium africanum
GM041182]
Length=250
Score = 491 bits (1265), Expect = 3e-137, Method: Compositional matrix adjust.
Identities = 249/250 (99%), Positives = 250/250 (100%), Gaps = 0/250 (0%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA
Sbjct 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA
Sbjct 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
Query 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC
Sbjct 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
Query 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD
Sbjct 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
Query 241 TGQVLLQRSL 250
TGQV+LQRSL
Sbjct 241 TGQVVLQRSL 250
>gi|340625757|ref|YP_004744209.1| hypothetical protein MCAN_07411 [Mycobacterium canettii CIPT
140010059]
gi|340003947|emb|CCC43081.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=250
Score = 490 bits (1261), Expect = 9e-137, Method: Compositional matrix adjust.
Identities = 248/250 (99%), Positives = 249/250 (99%), Gaps = 0/250 (0%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA
Sbjct 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
VTELCGVPALLSQLDRDEVAAISESAPTV ASGLSPELLPSLLAAVHRRRRRTRLITWVA
Sbjct 61 VTELCGVPALLSQLDRDEVAAISESAPTVAASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
Query 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
SSAAAAVLAIGVLVGVQGHSAAPQ+AAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC
Sbjct 121 SSAAAAVLAIGVLVGVQGHSAAPQQAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
Query 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD
Sbjct 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
Query 241 TGQVLLQRSL 250
TGQVLLQRSL
Sbjct 241 TGQVLLQRSL 250
>gi|308371745|ref|ZP_07426081.2| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308373555|ref|ZP_07432829.2| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308374081|ref|ZP_07434794.2| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
10 more sequence titles
Length=248
Score = 489 bits (1258), Expect = 2e-136, Method: Compositional matrix adjust.
Identities = 248/248 (100%), Positives = 248/248 (100%), Gaps = 0/248 (0%)
Query 3 MPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVT 62
MPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVT
Sbjct 1 MPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVT 60
Query 63 ELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASS 122
ELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASS
Sbjct 61 ELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASS 120
Query 123 AAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC 182
AAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC
Sbjct 121 AAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC 180
Query 183 LAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTG 242
LAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTG
Sbjct 181 LAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTG 240
Query 243 QVLLQRSL 250
QVLLQRSL
Sbjct 241 QVLLQRSL 248
>gi|240167751|ref|ZP_04746410.1| hypothetical protein MkanA1_00445 [Mycobacterium kansasii ATCC
12478]
Length=254
Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 184/254 (73%), Positives = 204/254 (81%), Gaps = 4/254 (1%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
M LRGLGPP D +++TG +H Y MWDAAYVLG+LSA DRRE+E H++GCP CR A
Sbjct 1 MVTSLRGLGPPGDNEGYDLTTGHNHPYGMWDAAYVLGSLSATDRREYEEHMSGCPACRQA 60
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLL----AAVHRRRRRTRLI 116
V EL GVPALLSQL RDEVAA++ES P +P+L P LL A V RRRR RL
Sbjct 61 VAELSGVPALLSQLARDEVAAMNESGPAAGGPPAAPQLSPQLLPSLLATVRWRRRRARLT 120
Query 117 TWVASSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFI 176
TWVAS+AAA VL I VLVGVQG+S +P+ AVSA PMAQVGT LLASTVS+ E WGTFI
Sbjct 121 TWVASAAAAVVLGIAVLVGVQGYSGSPEPPAVSAQPMAQVGTTLLASTVSLHPEHWGTFI 180
Query 177 NLRCVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQV 236
NLRCVCLAPP A HDTLAMVVVGRDGSQTRLATW+AEPGHTATPAGSISTPVD+IAAVQV
Sbjct 181 NLRCVCLAPPDAHHDTLAMVVVGRDGSQTRLATWVAEPGHTATPAGSISTPVDRIAAVQV 240
Query 237 VAADTGQVLLQRSL 250
V+ADTGQVLLQRSL
Sbjct 241 VSADTGQVLLQRSL 254
>gi|118616609|ref|YP_904941.1| hypothetical protein MUL_0832 [Mycobacterium ulcerans Agy99]
gi|118568719|gb|ABL03470.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=248
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 181/253 (72%), Positives = 194/253 (77%), Gaps = 17/253 (6%)
Query 4 PLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTE 63
P+ GLG P T +H Y MWDAAYVLG+LSAADRREFEAHLAGC CR AV E
Sbjct 7 PVTGLGAP---------TEGEHPYLMWDAAYVLGSLSAADRREFEAHLAGCASCRAAVAE 57
Query 64 LCGVPALLSQLDRDEVAAISESAPTVVA---SG---LSPELLPSLLAAVHRRRRRTRLIT 117
LCGVPA+LSQL DEVAAI E P V A SG +S +LLP+LLA V RRRRTRL
Sbjct 58 LCGVPAVLSQLGADEVAAIGE--PGVAAGTTSGSPQMSSQLLPTLLATVRWRRRRTRLAI 115
Query 118 WVASSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFIN 177
WVA SAAA L IGVLVG GHSA+ SA PMAQVGT LL STVS+ G WGTFIN
Sbjct 116 WVALSAAAVFLGIGVLVGAVGHSASAPVQTASAQPMAQVGTHLLESTVSVDGIHWGTFIN 175
Query 178 LRCVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVV 237
LRCVCLAPP A HDTLAMVVVGRDGSQTRLATW+AEPGHTATPAGSIS PVDQIAAVQVV
Sbjct 176 LRCVCLAPPDAHHDTLAMVVVGRDGSQTRLATWVAEPGHTATPAGSISMPVDQIAAVQVV 235
Query 238 AADTGQVLLQRSL 250
+AD+G+VLLQRSL
Sbjct 236 SADSGEVLLQRSL 248
>gi|296168600|ref|ZP_06850404.1| probable transmembrane anti-sigma factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896663|gb|EFG76302.1| probable transmembrane anti-sigma factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=243
Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 180/252 (72%), Positives = 199/252 (79%), Gaps = 14/252 (5%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
M PLRGLGPPDD Y MWDAAYVLG+LSAA+RREFEAHLA CP CR A
Sbjct 4 MKTPLRGLGPPDDP------------YVMWDAAYVLGSLSAAERREFEAHLAHCPACREA 51
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
V +L GVPALLSQL DEVAAI+++ P V LSPELL SLLA V RRRRTR++TWVA
Sbjct 52 VADLSGVPALLSQLGPDEVAAINDAGPRSVTPELSPELLTSLLAKVSWRRRRTRIVTWVA 111
Query 121 SSAAAAVLAIGVLVGVQGHSAAP--QRAAVSALPMAQVGTQLLASTVSISGEPWGTFINL 178
S+AAA VLAIGV VGVQG+S++ Q+ SA PMAQVGT LL STV +S + WGT INL
Sbjct 112 SAAAAVVLAIGVFVGVQGYSSSSSSQQVTASAAPMAQVGTTLLTSTVQLSSQHWGTSINL 171
Query 179 RCVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVA 238
RCVCLAP A HDTLAMVVVGRDGSQTRLATW+AEPG TATPAGSISTPVDQIAAVQVVA
Sbjct 172 RCVCLAPLNAHHDTLAMVVVGRDGSQTRLATWVAEPGRTATPAGSISTPVDQIAAVQVVA 231
Query 239 ADTGQVLLQRSL 250
A++GQVLLQ S+
Sbjct 232 AESGQVLLQHSM 243
>gi|183981094|ref|YP_001849385.1| hypothetical protein MMAR_1074 [Mycobacterium marinum M]
gi|183174420|gb|ACC39530.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=248
Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/253 (73%), Positives = 196/253 (78%), Gaps = 17/253 (6%)
Query 4 PLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTE 63
P+ GLG P T +H Y MWDAAYVLG+LSAADRREFEAHLAGC CR AV E
Sbjct 7 PVTGLGAP---------TEGEHPYLMWDAAYVLGSLSAADRREFEAHLAGCASCRAAVAE 57
Query 64 LCGVPALLSQLDRDEVAAISESAPTVVA---SG---LSPELLPSLLAAVHRRRRRTRLIT 117
LCGVPALLSQL DEVAAI E P V A SG +S +LLP+LLA V RRRRTRL
Sbjct 58 LCGVPALLSQLGADEVAAIGE--PGVAAGTTSGSPQMSSQLLPTLLATVRWRRRRTRLAI 115
Query 118 WVASSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFIN 177
WVASSAAA L IGVLVGV GHSA+ SA PMAQVGT LL STVS+ G WGTFIN
Sbjct 116 WVASSAAAVFLGIGVLVGVVGHSASAPVQTASAQPMAQVGTHLLESTVSVDGMHWGTFIN 175
Query 178 LRCVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVV 237
LRCVCLAPP A HDTLAMVVVGRDGSQTRLATW+AEPGHTATPAGSIS PVDQIAAVQVV
Sbjct 176 LRCVCLAPPDAHHDTLAMVVVGRDGSQTRLATWVAEPGHTATPAGSISMPVDQIAAVQVV 235
Query 238 AADTGQVLLQRSL 250
+AD+G+VLLQRSL
Sbjct 236 SADSGEVLLQRSL 248
>gi|342861835|ref|ZP_08718480.1| hypothetical protein MCOL_23215 [Mycobacterium colombiense CECT
3035]
gi|342130652|gb|EGT83956.1| hypothetical protein MCOL_23215 [Mycobacterium colombiense CECT
3035]
Length=235
Score = 281 bits (718), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 172/250 (69%), Positives = 196/250 (79%), Gaps = 15/250 (6%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
M P+ LGPP+D YAMWDAAYVLG+L AA RREFE H+A CP CR A
Sbjct 1 MRTPVADLGPPED------------RYAMWDAAYVLGSLPAAQRREFETHMAHCPACRSA 48
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
V +L GVPALLSQLD DEVAAI +S P A +S +LLPSLLA V RRRRTR++TWVA
Sbjct 49 VADLSGVPALLSQLDGDEVAAIDQSGP---APEMSEKLLPSLLATVRWRRRRTRVVTWVA 105
Query 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC 180
S+AAAAVLAIGV VG++G S+ P + ++ PMAQVGT LL STV++S + WGT INLRC
Sbjct 106 STAAAAVLAIGVFVGLEGWSSTPSQQVTASEPMAQVGTSLLTSTVAVSSQHWGTSINLRC 165
Query 181 VCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAAD 240
VCLAP A HDTLAMVVVGRDGSQTRLATW+A PGHTATPAG+ISTP+DQIAAVQVVAAD
Sbjct 166 VCLAPLTAHHDTLAMVVVGRDGSQTRLATWVAVPGHTATPAGAISTPIDQIAAVQVVAAD 225
Query 241 TGQVLLQRSL 250
+GQVLLQRSL
Sbjct 226 SGQVLLQRSL 235
>gi|254822309|ref|ZP_05227310.1| hypothetical protein MintA_20409 [Mycobacterium intracellulare
ATCC 13950]
Length=242
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 174/251 (70%), Positives = 197/251 (79%), Gaps = 16/251 (6%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
M P+ +GPP+D YAMWDAAYVLG+LSAA RREFE H+A CP CR A
Sbjct 7 MNTPVADIGPPED------------RYAMWDAAYVLGSLSAAQRREFETHMARCPACREA 54
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
V +L GVPALLSQLDRDEVAAI ES P A +S E+LPSLL+AV RRRRTR++TWVA
Sbjct 55 VADLSGVPALLSQLDRDEVAAIDESGP---APEMSEEMLPSLLSAVRWRRRRTRVVTWVA 111
Query 121 SSAAAAVLAIGVLVGVQGHSAAP-QRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLR 179
S+AAAAVLAIGV VG+Q S+ P Q+ SA PMAQVGT LL S+V ++G+ WGT I LR
Sbjct 112 SAAAAAVLAIGVFVGLQAWSSTPAQQVTASAEPMAQVGTSLLTSSVQVTGQHWGTSIALR 171
Query 180 CVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAA 239
CVCLAP A HDTLAMVVVGRDGSQTRLATW+A PGHTATP G+ISTPVDQIAAVQVVAA
Sbjct 172 CVCLAPLNAHHDTLAMVVVGRDGSQTRLATWVAVPGHTATPVGAISTPVDQIAAVQVVAA 231
Query 240 DTGQVLLQRSL 250
D+G+VLLQRSL
Sbjct 232 DSGKVLLQRSL 242
>gi|296164282|ref|ZP_06846868.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900344|gb|EFG79764.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=223
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/223 (67%), Positives = 180/223 (81%), Gaps = 1/223 (0%)
Query 29 MWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISESAPT 88
MWDAAYVLG+LSA D R+FEAH+A C ECR AV EL G+PA+L++LDR+++ AI+E+
Sbjct 1 MWDAAYVLGSLSATDWRDFEAHIACCLECRQAVAELSGIPAMLARLDRNDIGAINEADRP 60
Query 89 VVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHS-AAPQRAA 147
A+ + PELLPSLLAAV RR R+R +TW+ S+AAA +L IGVLVGV G +P +AA
Sbjct 61 SGATEMPPELLPSLLAAVRSRRVRSRAMTWMGSAAAAVILTIGVLVGVHGSFLTSPPQAA 120
Query 148 VSALPMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPYASHDTLAMVVVGRDGSQTRL 207
VSALPM QVGT LLASTVS+SG+ WGT I L+ +CLAPP + HDT+A+VVVGRDGSQTRL
Sbjct 121 VSALPMDQVGTTLLASTVSLSGQQWGTNIALKFMCLAPPDSPHDTVALVVVGRDGSQTRL 180
Query 208 ATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
ATW+A PGHTATP GS+S PVDQIA VQVV AD G V+LQRS+
Sbjct 181 ATWVAIPGHTATPTGSVSKPVDQIATVQVVLADNGHVMLQRSI 223
>gi|41410300|ref|NP_963136.1| hypothetical protein MAP4202 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399134|gb|AAS06752.1| hypothetical protein MAP_4202 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=236
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 174/251 (70%), Positives = 195/251 (78%), Gaps = 16/251 (6%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
M P+ +GPP+D YAMWDAAYVLG+LSAA RREFE H+A C CR A
Sbjct 1 MRTPVHDVGPPED------------RYAMWDAAYVLGSLSAAQRREFEQHMAHCRGCREA 48
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
V ++ GVPALLS+LD DEVAAI E+ P A LS +LLPSLL AV RRRRR R+ TWVA
Sbjct 49 VADISGVPALLSRLDHDEVAAIDEAGP---APQLSADLLPSLLTAVRRRRRRGRVATWVA 105
Query 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAV-SALPMAQVGTQLLASTVSISGEPWGTFINLR 179
S+AAAAVLAIGV VG++G S+ P R SA PMAQVGT LL STV +SG+ WGT INLR
Sbjct 106 SAAAAAVLAIGVFVGLEGWSSTPARQVTASAEPMAQVGTTLLTSTVQVSGQHWGTSINLR 165
Query 180 CVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAA 239
CVCLAP A HDTLAMVVVGRDGS+TRLATW+A PGHTA+PAGSISTPVDQIAAVQVVAA
Sbjct 166 CVCLAPLNAHHDTLAMVVVGRDGSRTRLATWVAVPGHTASPAGSISTPVDQIAAVQVVAA 225
Query 240 DTGQVLLQRSL 250
D+GQVLLQRSL
Sbjct 226 DSGQVLLQRSL 236
>gi|118462268|ref|YP_883565.1| hypothetical protein MAV_4430 [Mycobacterium avium 104]
gi|118163555|gb|ABK64452.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460626|gb|EGO39517.1| putative transmembrane transcriptional regulator (anti-sigma
factor) [Mycobacterium avium subsp. paratuberculosis S397]
Length=239
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 174/251 (70%), Positives = 195/251 (78%), Gaps = 16/251 (6%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
M P+ +GPP+D YAMWDAAYVLG+LSAA RREFE H+A C CR A
Sbjct 4 MRTPVHDVGPPED------------RYAMWDAAYVLGSLSAAQRREFEQHMAHCRGCREA 51
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVA 120
V ++ GVPALLS+LD DEVAAI E+ P A LS +LLPSLL AV RRRRR R+ TWVA
Sbjct 52 VADISGVPALLSRLDHDEVAAIDEAGP---APQLSADLLPSLLTAVRRRRRRGRVATWVA 108
Query 121 SSAAAAVLAIGVLVGVQGHSAAPQRAAV-SALPMAQVGTQLLASTVSISGEPWGTFINLR 179
S+AAAAVLAIGV VG++G S+ P R SA PMAQVGT LL STV +SG+ WGT INLR
Sbjct 109 SAAAAAVLAIGVFVGLEGWSSTPARQVTASAEPMAQVGTTLLTSTVQVSGQHWGTSINLR 168
Query 180 CVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAA 239
CVCLAP A HDTLAMVVVGRDGS+TRLATW+A PGHTA+PAGSISTPVDQIAAVQVVAA
Sbjct 169 CVCLAPLNAHHDTLAMVVVGRDGSRTRLATWVAVPGHTASPAGSISTPVDQIAAVQVVAA 228
Query 240 DTGQVLLQRSL 250
D+GQVLLQRSL
Sbjct 229 DSGQVLLQRSL 239
>gi|290560170|pdb|3HUG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560172|pdb|3HUG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560174|pdb|3HUG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
7 more sequence titles
gi|290560176|pdb|3HUG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560178|pdb|3HUG|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560180|pdb|3HUG|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560182|pdb|3HUG|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560184|pdb|3HUG|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560186|pdb|3HUG|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
gi|290560188|pdb|3HUG|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Anti-Sigma
Factor Rsla In Complex With -35 Promoter Binding Domain
Of Sigl
Length=108
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA
Sbjct 1 MTMPLRGLGPPDDTGVREVSTGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGA 60
Query 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHR 108
VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHR
Sbjct 61 VTELCGVPALLSQLDRDEVAAISESAPTVVASGLSPELLPSLLAAVHR 108
>gi|333990403|ref|YP_004523017.1| hypothetical protein JDM601_1763 [Mycobacterium sp. JDM601]
gi|333486371|gb|AEF35763.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=209
Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 130/222 (59%), Positives = 151/222 (69%), Gaps = 13/222 (5%)
Query 29 MWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISESAPT 88
MWDAAYVLGALS A+R EFE HL GCP C+ AV EL G+ LLS LD D VAA+
Sbjct 1 MWDAAYVLGALSTAERAEFEGHLVGCPWCQSAVAELEGMSELLSHLDLDLVAALDPDDED 60
Query 89 VVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAPQRAAV 148
A A R RR RL +WV ++AAAA +A+ VGV G SA P A
Sbjct 61 DPAPA----------PAPARNGRRLRL-SWVGTAAAAAAVAVAAFVGVAGQSAPPPDA-- 107
Query 149 SALPMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPYASHDTLAMVVVGRDGSQTRLA 208
+A+PM QV T LLASTVS+S WGT I LRCVCLA A HD LA+VVVGRDGS+ RLA
Sbjct 108 TAVPMLQVHTALLASTVSVSDMDWGTLIELRCVCLADSSAPHDLLALVVVGRDGSRNRLA 167
Query 209 TWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
+W+A PGHTATP GSIS VDQIA+VQVV+AD+ +VLLQR+L
Sbjct 168 SWVAHPGHTATPTGSISMSVDQIASVQVVSADSDEVLLQRTL 209
>gi|108798023|ref|YP_638220.1| putative transmembrane anti-sigma factor [Mycobacterium sp. MCS]
gi|119867118|ref|YP_937070.1| putative transmembrane anti-sigma factor [Mycobacterium sp. KMS]
gi|108768442|gb|ABG07164.1| putative transmembrane anti-sigma factor [Mycobacterium sp. MCS]
gi|119693207|gb|ABL90280.1| putative transmembrane anti-sigma factor [Mycobacterium sp. KMS]
Length=239
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/232 (44%), Positives = 134/232 (58%), Gaps = 9/232 (3%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISESA 86
Y WDAAYVLG+LS+ADRREFEAH+ C CR AV EL G+PALLS LD DEV +
Sbjct 9 YLQWDAAYVLGSLSSADRREFEAHMQTCDRCRAAVAELSGIPALLSMLDADEVDGQLD-G 67
Query 87 PTVVASGLSPELLPSLLAAVHRRRRRTRLIT----WVASSAAAAVLAIGVLVGVQGHSAA 142
L PE+L S+L V RRRR+R +T +A++ A L I + G G
Sbjct 68 DEPEPPPLRPEVLDSVLDKVKWRRRRSRWMTSAAVGLAAAVLAVGLVIAIRPGAVGMQNG 127
Query 143 PQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCV----CLAPPYASHDTLAMVVV 198
+ M ++ +TVS+S WGT I++ C P A L MVVV
Sbjct 128 TPEVTAATYEMTKLAPTPFNATVSLSDFGWGTRIDMACTYGQWSGGGPAAPPSRLGMVVV 187
Query 199 GRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
GRDG+++ +ATWL G TA P+G+ + D IAAVQ+VAADT +VLL+++L
Sbjct 188 GRDGTRSEIATWLGLSGATALPSGNTTLHRDDIAAVQLVAADTREVLLEKTL 239
>gi|126433685|ref|YP_001069376.1| putative transmembrane anti-sigma factor [Mycobacterium sp. JLS]
gi|126233485|gb|ABN96885.1| putative transmembrane anti-sigma factor [Mycobacterium sp. JLS]
Length=239
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/232 (44%), Positives = 134/232 (58%), Gaps = 9/232 (3%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISESA 86
Y WDAAYVLG+LS+ADRREFEAH+ C CR AV EL G+PALLS LD DEV +
Sbjct 9 YLQWDAAYVLGSLSSADRREFEAHMQTCDRCRAAVAELSGIPALLSMLDADEVDGQLD-G 67
Query 87 PTVVASGLSPELLPSLLAAVHRRRRRTRLIT----WVASSAAAAVLAIGVLVGVQGHSAA 142
L PE+L S+L V RRRR+R +T +A++ A L I + G G
Sbjct 68 DEPEPPPLRPEVLDSVLDKVKWRRRRSRWMTSAAVGLAAAVLAVGLVIAIRPGAVGMQNG 127
Query 143 PQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCV----CLAPPYASHDTLAMVVV 198
+ M ++ +TVS+S WGT I++ C P A L MVVV
Sbjct 128 TPEVTAATYEMTKLAPTPFNATVSLSDFGWGTRIDMACTYGQWSGGGPAAPPSRLGMVVV 187
Query 199 GRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
GRDG+++ +ATWL G TA P+G+ + D IAAVQ+V+ADT +VLL+++L
Sbjct 188 GRDGTRSEIATWLGLSGATALPSGNTTLHRDDIAAVQLVSADTREVLLEKTL 239
>gi|118472236|ref|YP_885869.1| hypothetical protein MSMEG_1487 [Mycobacterium smegmatis str.
MC2 155]
gi|118173523|gb|ABK74419.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=243
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/234 (44%), Positives = 145/234 (62%), Gaps = 9/234 (3%)
Query 23 DDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI 82
D Y+ WDAAYVLG+LS+ +RRE+EAHL CP+CR V EL G+PALLS +D D+V AI
Sbjct 13 DPDRYSTWDAAYVLGSLSSEERREYEAHLTTCPQCRAGVAELSGMPALLSLIDLDDVRAI 72
Query 83 SESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAA 142
P L PE+L S++A V RRRRTR +T ++ AA +LA+G++V + +
Sbjct 73 DGEQPD---PPLRPEVLDSVMAEVGARRRRTRWLTTSVAALAAVLLAVGIVVLARPEAFG 129
Query 143 PQRA----AVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC--LAPPYASHDTLAMV 196
QR L M++V + ++++++G WGT I++ C A L MV
Sbjct 130 LQRGTEQQTAQMLEMSKVAQTPINASIALTGYTWGTRIDMACSYGDWGSKGAQPQDLGMV 189
Query 197 VVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
VVGRDGS+ ++ATWL G TA P+G+ P+D IAA+Q+V+ G+VLL++ L
Sbjct 190 VVGRDGSREQVATWLGLSGATALPSGNTQKPMDDIAAIQMVSVADGKVLLEKKL 243
>gi|120402362|ref|YP_952191.1| putative transmembrane anti-sigma factor [Mycobacterium vanbaalenii
PYR-1]
gi|119955180|gb|ABM12185.1| putative transmembrane anti-sigma factor [Mycobacterium vanbaalenii
PYR-1]
Length=238
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/240 (43%), Positives = 144/240 (60%), Gaps = 22/240 (9%)
Query 24 DHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAIS 83
D Y WDAAYVLGAL+ DRRE+EAHL GC C AV EL G+P LL+ LD DEV+A+
Sbjct 8 DDRYRTWDAAYVLGALAGDDRREYEAHLTGCDRCHSAVAELSGIPGLLAMLDLDEVSALD 67
Query 84 ESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIG-------VLVGV 136
++ P L PE+L S+L V RRRR R T A +AAA +LA+ G+
Sbjct 68 DAQPD---PPLRPEVLTSVLDRVSARRRRARWWTTTALAAAAVLLAVALVLAIRPATFGL 124
Query 137 QGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC------LAPPYASH 190
+ +P A + MA+V + ++++++G WGT I++ C APP
Sbjct 125 GTGTESPPTAQMQE--MAKVSETPINASIALTGYGWGTRIDMACSYGDWGRRDAPPQ--- 179
Query 191 DTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
L MVV+G DGS++ +ATWL G TA P+G+ P+DQIAAVQ+V++ G+VLL+++L
Sbjct 180 -NLGMVVIGDDGSRSEIATWLGLSGATALPSGTTPMPLDQIAAVQLVSSPDGKVLLEKNL 238
>gi|145225594|ref|YP_001136272.1| putative transmembrane anti-sigma factor [Mycobacterium gilvum
PYR-GCK]
gi|145218080|gb|ABP47484.1| putative transmembrane anti-sigma factor [Mycobacterium gilvum
PYR-GCK]
Length=234
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/236 (42%), Positives = 134/236 (57%), Gaps = 22/236 (9%)
Query 26 HYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISES 85
HY WDAAYVLGALS DRRE+E HL+GC CR AV EL G+P LLS LD DEV A+
Sbjct 6 HYRTWDAAYVLGALSTDDRREYEGHLSGCGGCRSAVAELDGMPGLLSLLDLDEVIALDHE 65
Query 86 APTVVASGLSPELLPSLLAAVHRRRRRTRLIT-WVASSAAAAVLAIG------VLVGVQ- 137
P A L PE+L S++ + RRRR R T W + AAA + + G
Sbjct 66 QP---APPLRPEVLTSVIDRMGARRRRARRATVWAVAVAAALLALAIVLAVRPAIFGSDG 122
Query 138 -GHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC----LAPPYASHDT 192
G AP + MA+V + ++++++G WGT I++ C P
Sbjct 123 GGEQTAPMQN------MAKVSETPINASIALTGYGWGTRIDMACSYGDWGQNPRGTPPQN 176
Query 193 LAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQR 248
L MVV+G DGS++++ATWL G TA P+G+ VD+I AVQ+V+A G+VLL++
Sbjct 177 LGMVVIGHDGSRSQIATWLGLSGATALPSGTTPMQVDEIRAVQLVSASDGEVLLEK 232
>gi|315445947|ref|YP_004078826.1| hypothetical protein Mspyr1_44360 [Mycobacterium sp. Spyr1]
gi|315264250|gb|ADU00992.1| hypothetical protein Mspyr1_44360 [Mycobacterium sp. Spyr1]
Length=234
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/236 (42%), Positives = 133/236 (57%), Gaps = 22/236 (9%)
Query 26 HYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISES 85
HY WDAAYVLGALS DRRE+E HL+GC CR AV EL G+P LLS L DEV A+
Sbjct 6 HYRTWDAAYVLGALSTDDRREYEGHLSGCGGCRSAVAELDGMPGLLSLLALDEVIALDHE 65
Query 86 APTVVASGLSPELLPSLLAAVHRRRRRTRLIT-WVASSAAAAVLAIG------VLVGVQ- 137
P A L PE+L S++ + RRRR R T W + AAA + + G
Sbjct 66 QP---APPLRPEVLTSVIDRMGARRRRARRATVWAVAVAAALLALAIVLAVRPAIFGSDG 122
Query 138 -GHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC----LAPPYASHDT 192
G AP + MA+V + ++++++G WGT I++ C P
Sbjct 123 GGEQTAPMQN------MAKVSETPINASIALTGYGWGTRIDMACSYGDWGQNPRGTPPQN 176
Query 193 LAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQR 248
L MVV+G DGS++++ATWL G TA P+G+ V++I AVQ+V+A G+VLL++
Sbjct 177 LGMVVIGHDGSRSQIATWLGLSGATALPSGTTPMQVNEIRAVQLVSASDGEVLLEK 232
>gi|54027487|ref|YP_121729.1| hypothetical protein nfa55130 [Nocardia farcinica IFM 10152]
gi|54018995|dbj|BAD60365.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=235
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/226 (38%), Positives = 122/226 (54%), Gaps = 4/226 (1%)
Query 25 HHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISE 84
Y WDAAYVLGAL +A+RRE+E HLAGCPECR AVTEL G+P +L+ +D D A+
Sbjct 6 DDYTTWDAAYVLGALGSAERREYEEHLAGCPECRAAVTELAGLPGMLALVDADTAEAMIG 65
Query 85 SAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSA-AP 143
+ + +P+LLP+L AA RRRRR+R + A+ A AA + + G AP
Sbjct 66 AGEEQAPAPAAPDLLPTLAAAAERRRRRSRWVAVGAALAGAAAAVAIAVPVLAGREQPAP 125
Query 144 QRAAVSAL---PMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPYASHDTLAMVVVGR 200
A L M+ V +A++ + + T + + C A A + V+G
Sbjct 126 PVTAEQVLAERSMSPVEPTPIAASFRLLADGDRTRVVMTCDYGAGEQAYTRRYRLAVIGA 185
Query 201 DGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLL 246
DGS+ L W A PG + T S+ +Q+ V++ +A+T +VLL
Sbjct 186 DGSRVDLGEWPAGPGTSLTVDSSVDLAPEQVRRVEITSAETNRVLL 231
>gi|254776865|ref|ZP_05218381.1| hypothetical protein MaviaA2_19661 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=56
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/56 (92%), Positives = 55/56 (99%), Gaps = 0/56 (0%)
Query 195 MVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
MVVVGRDGS+TRLATW+A PGHTA+PAGSISTPVDQIAAVQVVAAD+GQVLLQRSL
Sbjct 1 MVVVGRDGSRTRLATWVAVPGHTASPAGSISTPVDQIAAVQVVAADSGQVLLQRSL 56
>gi|226360395|ref|YP_002778173.1| hypothetical protein ROP_09810 [Rhodococcus opacus B4]
gi|226238880|dbj|BAH49228.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=252
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/245 (35%), Positives = 117/245 (48%), Gaps = 26/245 (10%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDE-VAAISES 85
Y WDAAYVLGA+S ADRRE+EAHL C +C AV+EL G+P LL+ + +E +S +
Sbjct 13 YVRWDAAYVLGAMSGADRREYEAHLTHCAQCSQAVSELAGMPGLLALITPEEAFGTLSGN 72
Query 86 APTVVASGLSPELLPSLLA--AVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSA-- 141
V +P +L L+ RR RR A++ A + +GVL A
Sbjct 73 GAPVDEETPAPRVLTGLVGAVQQRRRHRRAATALAAAAAVIAVAVPVGVLATQDRTPAAP 132
Query 142 -----APQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPY--------- 187
AP RA + A V + ++ S+ +GT I + C Y
Sbjct 133 VTALPAPDRANTTEAVFAPVVPTTITASASVVSTSFGTVIFVEC-----SYEDTWPGDGR 187
Query 188 --ASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVL 245
A+ + A+ V R G T +ATW E G T P + S PVD IA++ V + D QVL
Sbjct 188 YGAATEGYALTVTDRSGVATTVATWTGEAGQTVRPTATTSLPVDAIASIDVRSEDDYQVL 247
Query 246 LQRSL 250
L +L
Sbjct 248 LSTAL 252
>gi|111018270|ref|YP_701242.1| hypothetical protein RHA1_ro01260 [Rhodococcus jostii RHA1]
gi|110817800|gb|ABG93084.1| possible membrane protein [Rhodococcus jostii RHA1]
Length=252
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/247 (37%), Positives = 128/247 (52%), Gaps = 30/247 (12%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDE-VAAISES 85
YA WDAAYVLGA+S +DRRE+EAHLA C +C AV+EL G+P LL+ + +E + +
Sbjct 13 YARWDAAYVLGAMSPSDRREYEAHLAHCAQCSQAVSELAGMPGLLALITPEEAFGTLPGN 72
Query 86 APTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAPQR 145
A + +P +L L+ V RRRR R T +A++AA +A+ V V V P
Sbjct 73 AAPADSETPAPRVLTHLVGTVERRRRHRRAATALAAAAAVIAVAVPVGVLVTQDRTPP-- 130
Query 146 AAVSALPMAQ-------VGTQLLASTV----SISGEPWGTFINLRCVCLAPPY------- 187
A V+A+P+ V T ++ +T+ S++ WGT I + C Y
Sbjct 131 APVTAMPVPDRANTTEAVFTPVVPTTITASASVASVSWGTVIFVECS-----YEDTWPGD 185
Query 188 ----ASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQ 243
A + A+ V R G T LATW E G T P + S PVD I ++ V + D +
Sbjct 186 GRYGADTEGYALTVTDRSGVVTTLATWTGEAGTTVRPTATTSLPVDAIVSIDVRSDDDHE 245
Query 244 VLLQRSL 250
VLL +L
Sbjct 246 VLLTAAL 252
>gi|163840316|ref|YP_001624721.1| RNA polymerase sigma factor [Renibacterium salmoninarum ATCC
33209]
gi|162953792|gb|ABY23307.1| RNA polymerase sigma factor [Renibacterium salmoninarum ATCC
33209]
Length=413
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/246 (33%), Positives = 117/246 (48%), Gaps = 31/246 (12%)
Query 24 DHH--YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAA 81
DH+ A WDAAYVLGALS A+R EFE HL+ C C +V EL G+P +L+ L A
Sbjct 180 DHNDSLAQWDAAYVLGALSPAERHEFEIHLSSCARCAASVAELAGMPGILAALPAAAQAE 239
Query 82 I---SESAPTVVASGLSPELLPSLLAAVHRRRRRTRLI--------TWVASSAAAAVLAI 130
SE+ P S +LP L + + R RL+ A++ L
Sbjct 240 ALLRSEAEPVQA----SANVLPMLARRARKSKVRRRLMTVAAGIAVAAAATTVTVVALPA 295
Query 131 GVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVCLA----PP 186
+ VQ ++ +A+ A P+ G L S WGT I RC A P
Sbjct 296 SPISQVQANAVPLNFSAIDAQPVTVSGKALPVS--------WGTQIEWRCSYAASQSTPG 347
Query 187 Y--ASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQV 244
Y + +VVV R+G +T A+W + G +P +I TP+ +I+ ++V A++G+V
Sbjct 348 YTGGASTPFQLVVVDRNGKETVAASWDSSDGSVVSPVTTIDTPLTEISKIEVRWANSGKV 407
Query 245 LLQRSL 250
++ L
Sbjct 408 VVSAKL 413
>gi|169629250|ref|YP_001702899.1| hypothetical protein MAB_2164 [Mycobacterium abscessus ATCC 19977]
gi|169241217|emb|CAM62245.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=249
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/232 (32%), Positives = 110/232 (48%), Gaps = 20/232 (8%)
Query 24 DHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAIS 83
+H YA WDAAYVLGALS+ +RRE+E HL C C+ A++E+ +P LLS++DR +
Sbjct 4 EHVYADWDAAYVLGALSSTERREYEQHLVDCVSCQRALSEVTAMPGLLSKVDRGYAEKME 63
Query 84 ESAPTVVASGLSP----ELLPSLLAAVHRRRRRTRL-ITWVASSAAAAVLAIGVLVGVQG 138
P V+A + L P L A R+ RL + AAA L + ++
Sbjct 64 LEDPPVLAKPATSCPVQALWPKLQARWRRQSAVRRLAYVGAVAVAAAVALTVSLVPPPWY 123
Query 139 HSAAPQRAAVSAL-------PMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPYASHD 191
H AP A +L PM QV L++ V++ + GT + C P Y
Sbjct 124 HRPAPMNVAAGSLPAGEHWQPMRQVTPSPLSAQVALVRD--GTGTRIEMWCSYPVYGDDA 181
Query 192 T------LAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVV 237
A+ + R G ++W A+PG T + ++ DQI ++QV+
Sbjct 182 DDSAAAPYALRIGTRTGQSIIASSWTAKPGSTLMTSTTVPMAQDQIESIQVI 233
>gi|284028826|ref|YP_003378757.1| putative transmembrane anti-sigma factor [Kribbella flavida DSM
17836]
gi|283808119|gb|ADB29958.1| putative transmembrane anti-sigma factor [Kribbella flavida DSM
17836]
Length=220
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/223 (35%), Positives = 101/223 (46%), Gaps = 12/223 (5%)
Query 26 HYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISES 85
+ WDAAYVLGALSA +RRE+E HL C EC V L VP L+ L D A +
Sbjct 4 RFREWDAAYVLGALSAQERREYEEHLRTCAECSAEVAALQSVPDSLAMLPEDRALATLDP 63
Query 86 APTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAPQR 145
P P+LLP L AV R RRR R A AA + V A
Sbjct 64 TP--------PDLLPGLARAVERDRRRRRFRV--AGLVAATAATAAAIGAVVAGPLARDE 113
Query 146 AAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC--LAPPYASHDTLAMVVVGRDGS 203
+ +AQ L++ + E WGT I + C LA P + V R G
Sbjct 114 PEGEYVVLAQTVASKLSADARLVEERWGTTIEISCRYDDLATPSERARGYDLYVTDRSGK 173
Query 204 QTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLL 246
T +A W A PG T PA + +I A+ + ++DTG++LL
Sbjct 174 STLIANWTASPGTTVRPAATTKLHKSEIRALDIRSSDTGRILL 216
>gi|119715912|ref|YP_922877.1| hypothetical protein Noca_1677 [Nocardioides sp. JS614]
gi|119536573|gb|ABL81190.1| putative membrane protein [Nocardioides sp. JS614]
Length=239
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/233 (37%), Positives = 119/233 (52%), Gaps = 16/233 (6%)
Query 23 DDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI 82
D A D AYVLGAL+ +R EFE HL GC +C +V +L G+P LLSQ+ + +
Sbjct 9 DGCELAHLDGAYVLGALAPEERLEFERHLRGCKDCARSVQQLAGLPGLLSQVSVE----V 64
Query 83 SESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGV-----Q 137
ESAP V + LLP+L+ V R RRR R +T +A++AA V+ + V
Sbjct 65 LESAP--VDEPVPDTLLPALVREVRRGRRRRRWLTGLAAAAAVVVVGAASVAVVTTNDGD 122
Query 138 GHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPYASHD-----T 192
G A A+ SA M VG + +S++ WGT + L C AP + T
Sbjct 123 GAPVAVPTASASAREMTPVGADGVTGWLSMTSVAWGTRLELTCTYQAPTDGYYQQAGPPT 182
Query 193 LAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVL 245
+VV RDG ++A+W PG T T G+ + V I +VQV +AD VL
Sbjct 183 YELVVRTRDGGVEQVASWRGLPGRTLTITGATAASVADIVSVQVRSADGHPVL 235
>gi|323359469|ref|YP_004225865.1| transmembrane transcriptional regulator [Microbacterium testaceum
StLB037]
gi|323275840|dbj|BAJ75985.1| predicted transmembrane transcriptional regulator [Microbacterium
testaceum StLB037]
Length=234
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/237 (36%), Positives = 122/237 (52%), Gaps = 14/237 (5%)
Query 21 TGDDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVA 80
+ + + WD AYVLGALSAADR E+EAHLA C CR AV EL LLS+L +
Sbjct 2 SAEHERLSSWDGAYVLGALSAADRAEYEAHLAVCAPCRKAVAELAPTAGLLSRLSAERAR 61
Query 81 AISESAPTVVASGLSPELLPSLLAAVHR--RRRRTRLITWVASSAAAAVLAIGVLVGVQG 138
AI +AP A ++P PSL V + RRRR R IT +A+ AV+AI V +
Sbjct 62 AI--AAPDGPAPVVTPH--PSLRTRVVQTARRRRARRITAWTLAASLAVVAIAVPTVITV 117
Query 139 HSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC-----VCLAPPYASHDTL 193
+A+ + V+ + +V L ++V ++ WGT I+L C V APP
Sbjct 118 TNASSSSSGVT-YALDEVNGAPLEASVKLTPVAWGTRIDLVCQYTGEVLDAPPGGWP--Y 174
Query 194 AMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVLLQRSL 250
A+ V G+ + L+TW A PG T + I ++++ + D +V+++R
Sbjct 175 ALAVTDDSGATSVLSTWRAGPGATTELSAGTDLEASSIGSIEIRSVDGDRVVMRRDF 231
>gi|170781283|ref|YP_001709615.1| hypothetical protein CMS_0859 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155851|emb|CAQ00976.1| putative membrane protein [Clavibacter michiganensis subsp. sepedonicus]
Length=265
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/265 (31%), Positives = 114/265 (44%), Gaps = 42/265 (15%)
Query 23 DDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI 82
DD H WDAAYVLG+LSA DR FEAHL GC C ++ EL G+P +L L DE A+
Sbjct 6 DDIHE--WDAAYVLGSLSATDRALFEAHLEGCDACMRSLAELSGLPGVLRMLPVDEAIAL 63
Query 83 SE--SAPTVVASGLSPELLPS-------------LLAAVHRRRRRTRLITWV-------- 119
+ AP V P PS L+A R R W+
Sbjct 64 MDEPEAPAVPQPAPEPRERPSAAAGHRVPRRRRRPLSAPARLPVSRRTGGWILVAAALVL 123
Query 120 --ASSAAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVG------------TQLLASTV 165
+ + L GV V AP + SA P + G + + + +
Sbjct 124 LVGGAGLGSALRAGVSAPVA--DPAPSVTSPSADPSSSTGLPADAVSMRSELDEGVTAQL 181
Query 166 SISGEPWGTFINLRCVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSIS 225
+++ +PWGT + C A A +V + DG++T +ATW A A + S
Sbjct 182 AVTAKPWGTRFDWSC-AYAGGGARKGAYDLVAIADDGTRTIVATWGAGQAEATQLAATSS 240
Query 226 TPVDQIAAVQVVAADTGQVLLQRSL 250
P+++I VQ+ +D+ VL R L
Sbjct 241 LPIERIREVQITPSDSDVVLASRDL 265
>gi|84495420|ref|ZP_00994539.1| hypothetical protein JNB_11479 [Janibacter sp. HTCC2649]
gi|84384913|gb|EAQ00793.1| hypothetical protein JNB_11479 [Janibacter sp. HTCC2649]
Length=236
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/227 (34%), Positives = 113/227 (50%), Gaps = 25/227 (11%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISESA 86
+A D +YVLGALS +R EFE HLA C EC +V EL G+P LL+Q+D ++ S
Sbjct 5 FAHLDGSYVLGALSPTERLEFERHLASCAECSQSVRELAGIPGLLAQVDLSDIE--DGSV 62
Query 87 PTVVASGLSPELLPSLLAAVH--RRRRRTRLITWVASSAAAAVLAIGVLVGVQG------ 138
P V A+ LLPSL++ V RRR + AS AA A A+ V G+ G
Sbjct 63 PPVPAT-----LLPSLVSEVRSAERRRSVWVGAIAASVAAVAGGALAVATGLGGGEQPLV 117
Query 139 -HSAAPQRAAV---SALPMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPYASHDTL- 193
+A P +A S L M VG+ +++ V+++G WGT + + C ++ +
Sbjct 118 ASAATPTVSATSTASKLHMESVGSSPISADVALAGVAWGTRLEMTC-SYGEGEDDYEAIH 176
Query 194 ----AMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQV 236
+ V RDG ++ATW PG T + + + I V+V
Sbjct 177 GWVYGLFVQTRDGRFEQVATWKGLPGRTMNLQAATAAQREDIQRVEV 223
>gi|148271470|ref|YP_001221031.1| hypothetical protein CMM_0291 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829400|emb|CAN00313.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length=263
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/261 (32%), Positives = 115/261 (45%), Gaps = 36/261 (13%)
Query 23 DDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDE-VAA 81
DD H WDAAYVLG+LSA DR FEAHL GC C ++ EL G+P +L L +E +A
Sbjct 6 DDIHE--WDAAYVLGSLSATDRALFEAHLEGCDACMRSLAELSGLPGVLRMLPVEEAIAL 63
Query 82 ISESAPTVVASGLSP----------ELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAI- 130
+ E V ++P LA R R W+ ++AA +L
Sbjct 64 MDEPEAPAVPQPVAPAQDAPGHRVPRRRRRPLAGGARPPLSRRTGGWILAAAAVVLLVGG 123
Query 131 -----GVLVGVQGHSAAPQRAAVSAL--PMAQVGTQLLASTVS--------------ISG 169
+ GV G A P A+ SA P + L A VS ++
Sbjct 124 AGLGSALRAGVSGPVADPSPASSSAAGDPSGDLSEGLPADAVSMRSDLDEGVTAKLALTP 183
Query 170 EPWGTFINLRCVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVD 229
+PWGT + C A +V + DG++T +A+W A + A + S P+D
Sbjct 184 QPWGTRFDWSCE-YAGGGVGQGAYDLVAIEDDGTRTVVASWGAGQAESRLLAATSSLPMD 242
Query 230 QIAAVQVVAADTGQVLLQRSL 250
+I VQ+ +D+ VL R L
Sbjct 243 RIRTVQITPSDSDVVLASRDL 263
>gi|334338336|ref|YP_004543488.1| transmembrane anti-sigma factor [Isoptericola variabilis 225]
gi|334108704|gb|AEG45594.1| putative transmembrane anti-sigma factor [Isoptericola variabilis
225]
Length=254
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/237 (34%), Positives = 115/237 (49%), Gaps = 23/237 (9%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISESA 86
Y WDAAYVLGAL A+RR +E HLAGC CR AV EL G+P LLS L + A+ +
Sbjct 18 YREWDAAYVLGALGPAERRAYEEHLAGCAACREAVAELAGMPGLLSSLPPEHALALLDDT 77
Query 87 PTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAPQRA 146
AS +++P A RR R R + +A A V+ V G SA P+
Sbjct 78 SQTAASA---DIVPFSALAARARRHRARRRSLALVAAVALVVGGVVTGLALG-SAGPEGE 133
Query 147 AVSALP------------MAQVGTQLLASTVSISGEPWGTFINLRCVCLAPP----YASH 190
A +P + VG + +T++ + PWGT + C A Y +
Sbjct 134 APGGVPSSGTVAEGTAVELEPVGAIDVRATLTATPRPWGTQLEWSCSYPARSAGQRYDAA 193
Query 191 DTLA--MVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVL 245
+ +A +V+V RDG +T ATW A + + + + P+D +A V++ A GQ L
Sbjct 194 EPVAYELVLVDRDGGRTVAATWSASGTESRGLSAASAVPLDDVARVEIAVAG-GQAL 249
>gi|229818747|ref|YP_002880273.1| hypothetical protein Bcav_0246 [Beutenbergia cavernae DSM 12333]
gi|229564660|gb|ACQ78511.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
Length=259
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/240 (34%), Positives = 110/240 (46%), Gaps = 28/240 (11%)
Query 25 HHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI-- 82
YA WD+AYVLGAL+ A+R E+E HLAGC +CR AV EL G+P LL L DE A+
Sbjct 5 DQYADWDSAYVLGALAPAERDEYERHLAGCADCRAAVGELAGLPGLLGALPADEALALVD 64
Query 83 -----SESAP--------------TVVASGLSPEL-LPSLLAAVHRRRRRTRLITWVASS 122
SE A V + GL P + L L+ V R RRR RL V +
Sbjct 65 PDDAGSEDAARGSDAARPAATTGGAVASPGLGPTVPLGPLVERVRRGRRRRRLAAVVGAC 124
Query 123 AAAAVLAIGVLVGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVC 182
A A + +L V APQ V+ AQ L+++ ++ GT I+ C
Sbjct 125 AGVAAVVALLLAVVVPGLRAPQEVDVTFATTAQAQGAPLSASAQLAARDGGTRISSTCSY 184
Query 183 LAPPYASHD------TLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQV 236
+ Y D + V DG+ ++++W A PG T G P+ IA + +
Sbjct 185 GSSGYGDVDGGGPARVFGLYVTDADGAVEQVSSWTAAPGDTIEATGWTDLPLGAIAELDI 244
>gi|330465221|ref|YP_004402964.1| putative transmembrane anti-sigma factor [Verrucosispora maris
AB-18-032]
gi|328808192|gb|AEB42364.1| putative transmembrane anti-sigma factor [Verrucosispora maris
AB-18-032]
Length=230
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/233 (29%), Positives = 105/233 (46%), Gaps = 27/233 (11%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISESA 86
+A D AYVLGALS ADR +E HL CP C+ +++E+ +P LL +LD
Sbjct 6 FAYDDGAYVLGALSPADRAAYERHLVDCPACQQSISEIAVLPGLLGRLD----------- 54
Query 87 PTVVASGLSP---ELLPSLLAA----------VHRRRRRTRLITWVASSAAAAVLAIGVL 133
PT + L P +P LL+A +R R + A + +L
Sbjct 55 PTSLEQFLPPPENPRVPELLSAARERRRRERQANRLRYAVIGLAAAALALVVGFGTATML 114
Query 134 VGVQGHSAAPQRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRC-VCLAPPYASHDT 192
G + ++ Q V P+A G+ L + + ++G WGT + + C Y +
Sbjct 115 PGQEPNAPLAQVRMVQMRPVA--GSVPLHAEIGLTGTNWGTEVTMTCGYDERSGYGKANA 172
Query 193 LAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVL 245
+V DGSQ ++ +WLA PG +G+ ++ +++V AD VL
Sbjct 173 FRLVAHAADGSQEQIGSWLAAPGDDLRISGATRFTNAELVRLELVRADGTVVL 225
>gi|300784638|ref|YP_003764929.1| transmembrane anti-sigma factor [Amycolatopsis mediterranei U32]
gi|299794152|gb|ADJ44527.1| putative transmembrane anti-sigma factor [Amycolatopsis mediterranei
U32]
gi|340526061|gb|AEK41266.1| transmembrane anti-sigma factor [Amycolatopsis mediterranei S699]
Length=219
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/195 (34%), Positives = 98/195 (51%), Gaps = 9/195 (4%)
Query 24 DHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAIS 83
+ +A +DAAYVLGAL+ DR+ FE HL C C +V EL G+P LL+++D AA+
Sbjct 3 EDPFATFDAAYVLGALAPEDRQRFEEHLRTCDRCAASVRELAGLPGLLARVDA-PTAAVP 61
Query 84 ESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAP 143
++ P P+LLP++L V R RR +T +++ A A +V A
Sbjct 62 DAGPP------PPDLLPAVLRRVRRGRRIRLAVTSASAAVALAACVALGVVVTLPAPAPV 115
Query 144 QRAAVSALPMAQVGTQLLASTVSISGEPWGTFINLRCVCLAPPYASHDTLAMVVVGRDGS 203
A + M +G + + ++ WGT +++ C S +V V R G+
Sbjct 116 PPAGPPPVAMTALGQFPVRADARLASFEWGTQVDMSCSYTG--SRSGGEYLLVAVSRSGA 173
Query 204 QTRLATWLAEPGHTA 218
QT+LATW A P TA
Sbjct 174 QTQLATWKAVPDDTA 188
>gi|345015560|ref|YP_004817914.1| hypothetical protein Strvi_8314 [Streptomyces violaceusniger
Tu 4113]
gi|344041909|gb|AEM87634.1| hypothetical protein Strvi_8314 [Streptomyces violaceusniger
Tu 4113]
Length=253
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/211 (32%), Positives = 93/211 (45%), Gaps = 40/211 (18%)
Query 23 DDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI 82
D H A+ AY LG L AD FE HL GC C + EL G+P LL+ E A
Sbjct 7 DQQHTAV--GAYALGVLDPADAARFEDHLIGCERCAAELDELMGLPPLLA-----EYATA 59
Query 83 SESA----PTVVASGLSPELLPSLL--AAVHRR---RRRTRLITWVASSAAAAVLAIG-- 131
++ P+VV + PELL L+ V R+ RRR L+ AAAAVL +G
Sbjct 60 ADGTALPDPSVVTARPGPELLDRLMEDVTVSRKASGRRRLYLV------AAAAVLIVGGP 113
Query 132 ----VLVGVQGHSAAPQRAAVSALPMAQVGTQLLA--------STVSISGEPWGTFINLR 179
L Q A ++ + G + A ++VS+ + WGT + L+
Sbjct 114 LAGAALTASSDDGGKTQAVASTSQQVYDQGQKFGAVDPVTKVDASVSLQQKGWGTSVALK 173
Query 180 CVCLAPPYASHDTLAMVVVGRDGSQTRLATW 210
L P T +V +G+DG + + TW
Sbjct 174 LGNLKGPR----TCDLVAIGKDGHEETITTW 200
>gi|152965767|ref|YP_001361551.1| hypothetical protein Krad_1801 [Kineococcus radiotolerans SRS30216]
gi|151360284|gb|ABS03287.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216]
Length=258
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/242 (30%), Positives = 98/242 (41%), Gaps = 32/242 (13%)
Query 24 DHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAIS 83
D +A YVLGAL+ A+R FE HL CP+CR AV L G+P LLS+ RD V A+
Sbjct 6 DDPFATTAGPYVLGALAPAERSAFETHLRTCPDCRHAVEGLAGLPGLLSRTPRDVVDALG 65
Query 84 ESAPTVV--ASGLSPELLPSLL--------------------AAVHRRRRRTRLITWVAS 121
P GL + +P + + W
Sbjct 66 REDPAAALRERGLGEDAVPDTVLPALLRAVRRRRTTRRAALVGGLGLAAALAGAFAWSGG 125
Query 122 SAAAAVLAIGVLVGVQGHSAAPQRAAVSALP---MAQVGTQLL----ASTVSISGEPWGT 174
+A + L G S+AP A A P Q LL +TV ++ WGT
Sbjct 126 DPSAPAVP-SALPGAP--SSAPSSAGPGASPGPGRVQAMDPLLPVPVTATVQLTEVGWGT 182
Query 175 FINLRCVCLAPPYASHDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAV 234
++L C A+VV G+ ++ TW A PG A +G+ S QIA+V
Sbjct 183 QVDLVCAYAHAEAEQPHPYALVVSDTAGATQQIGTWTALPGRDAQLSGATSWTRAQIASV 242
Query 235 QV 236
+V
Sbjct 243 EV 244
>gi|238062229|ref|ZP_04606938.1| transmembrane anti-sigma factor [Micromonospora sp. ATCC 39149]
gi|237884040|gb|EEP72868.1| transmembrane anti-sigma factor [Micromonospora sp. ATCC 39149]
Length=383
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/202 (34%), Positives = 94/202 (47%), Gaps = 21/202 (10%)
Query 26 HYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISES 85
+A D AYVLGAL+ ADR +E HLAGC CR AV E+ +P LL +LD + E
Sbjct 5 EFAHDDGAYVLGALAPADRAAYERHLAGCASCRDAVAEIAVLPGLLGRLDPAGLEQFLEP 64
Query 86 APTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAPQR 145
+ +P+LL A R RRR R + A A+ L+ G +
Sbjct 65 PAEI-------SRVPALLDAARRHRRRERSAARRRYALTALAAAVLALLAGFGTATLRPA 117
Query 146 AAVSALPMAQV---------GTQLLASTVSISGEPWGTFINLRCVCLAPPYASHD---TL 193
V+ P QV GT + + V ++G PWGT + +RC A H T
Sbjct 118 VEVTPTPTPQVALASMRPVAGTVPVHAEVGLTGTPWGTEVTMRCGYDR--RAGHREAYTF 175
Query 194 AMVVVGRDGSQTRLATWLAEPG 215
+V G DG+ ++ +WLA PG
Sbjct 176 RLVAHGPDGATEQIGSWLAAPG 197
>gi|315501205|ref|YP_004080092.1| transmembrane anti-sigma factor [Micromonospora sp. L5]
gi|315407824|gb|ADU05941.1| putative transmembrane anti-sigma factor [Micromonospora sp.
L5]
Length=229
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/227 (30%), Positives = 101/227 (45%), Gaps = 14/227 (6%)
Query 26 HYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISES 85
+A D AYVLGAL+ ADR +E HLAGC +CR AV E+ +P LL +LD + E
Sbjct 5 EFAHDDGAYVLGALAPADRVAYERHLAGCAQCREAVAEIAVLPGLLGRLDPAGLEQFLEV 64
Query 86 APTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAPQR 145
P +P+LL A R+RR R + + A A ++ G
Sbjct 65 GPET-------SRVPALLDAARERKRRERSRSRRRYALTALAAAALAVLAGVGVGLVQSP 117
Query 146 AAVSALPMAQVGTQLLASTVSISGE------PWGTFINLRC-VCLAPPYASHDTLAMVVV 198
A S P+A + +A TV + E PWGT + + C + T +V
Sbjct 118 AEPSKPPVALASMRPVAGTVPVHAEVGLTETPWGTEVTMHCGYDRRAGHREAYTFRLVAH 177
Query 199 GRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVL 245
G DG+ ++ +WLA PG +G ++ ++++ VL
Sbjct 178 GPDGATEQIGSWLAAPGDDLRFSGVTRFTKGELVRLELLRGTNAPVL 224
>gi|333990405|ref|YP_004523019.1| dioxygenase [Mycobacterium sp. JDM601]
gi|333486373|gb|AEF35765.1| dioxygenase [Mycobacterium sp. JDM601]
Length=543
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/45 (69%), Positives = 34/45 (76%), Gaps = 0/45 (0%)
Query 24 DHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVP 68
DH YA WDAAYVLG+LS+ADRREFE HL C CR AV EL +P
Sbjct 13 DHPYATWDAAYVLGSLSSADRREFEGHLDRCSSCRSAVAELAPIP 57
>gi|302864920|ref|YP_003833557.1| putative transmembrane anti-sigma factor [Micromonospora aurantiaca
ATCC 27029]
gi|302567779|gb|ADL43981.1| putative transmembrane anti-sigma factor [Micromonospora aurantiaca
ATCC 27029]
Length=229
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/227 (30%), Positives = 101/227 (45%), Gaps = 14/227 (6%)
Query 26 HYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISES 85
+A D AYVLGAL+ ADR +E HLAGC +CR AV E+ +P LL +LD + E
Sbjct 5 EFAHDDGAYVLGALAPADRVAYERHLAGCAQCREAVAEIAVLPGLLGRLDPAGLEQFLEV 64
Query 86 APTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAAAVLAIGVLVGVQGHSAAPQR 145
P +P+LL A R+RR R + + A A ++ G
Sbjct 65 GPET-------SRVPALLDAARERKRRERSRSRRRYALTALAAAALAVLAGVGVGLVQSP 117
Query 146 AAVSALPMAQVGTQLLASTVSISGE------PWGTFINLRC-VCLAPPYASHDTLAMVVV 198
A + P+A + +A TV + E PWGT + + C + T +V
Sbjct 118 AEPTKPPVALASMRPVAGTVPVHAEVGLTETPWGTEVTMHCGYDRRAGHREAYTFRLVAH 177
Query 199 GRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVVAADTGQVL 245
G DG+ ++ +WLA PG +G ++ ++++ VL
Sbjct 178 GPDGATEQIGSWLAAPGDDLRFSGVTRFTKGELVRLELLRGTNAPVL 224
>gi|326331605|ref|ZP_08197895.1| putative transmembrane anti-sigma factor [Nocardioidaceae bacterium
Broad-1]
gi|325950861|gb|EGD42911.1| putative transmembrane anti-sigma factor [Nocardioidaceae bacterium
Broad-1]
Length=135
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/59 (56%), Positives = 39/59 (67%), Gaps = 0/59 (0%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAISES 85
+A WDA+YVLGALS +DRR FE HL C CR AV EL G+P LL L R+E + E
Sbjct 13 FADWDASYVLGALSPSDRRAFERHLTTCSVCRDAVAELAGMPGLLGALSREEAEELLED 71
>gi|296131340|ref|YP_003638590.1| putative transmembrane anti-sigma factor [Cellulomonas flavigena
DSM 20109]
gi|296023155|gb|ADG76391.1| putative transmembrane anti-sigma factor [Cellulomonas flavigena
DSM 20109]
Length=262
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/71 (53%), Positives = 45/71 (64%), Gaps = 1/71 (1%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLD-RDEVAAISES 85
Y WDAAYVLGAL +RR++EAHLA C CR AV EL G+P LL Q+ +D VA+ S
Sbjct 6 YREWDAAYVLGALPPGERRDYEAHLATCDACRTAVGELAGLPGLLGQVPAQDAVASEDAS 65
Query 86 APTVVASGLSP 96
A+G P
Sbjct 66 GQAPGATGPGP 76
>gi|332670414|ref|YP_004453422.1| putative transmembrane anti-sigma factor [Cellulomonas fimi ATCC
484]
gi|332339452|gb|AEE46035.1| putative transmembrane anti-sigma factor [Cellulomonas fimi ATCC
484]
Length=254
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/56 (58%), Positives = 37/56 (67%), Gaps = 0/56 (0%)
Query 27 YAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI 82
+ WDAAYVLGAL DRR FE HLAGC CRG V EL G+P +L L D+ A+
Sbjct 18 FREWDAAYVLGALGPTDRRLFEEHLAGCDACRGRVGELAGLPGVLRALPADQAVAL 73
>gi|258651325|ref|YP_003200481.1| transmembrane anti-sigma factor [Nakamurella multipartita DSM
44233]
gi|258554550|gb|ACV77492.1| putative transmembrane anti-sigma factor [Nakamurella multipartita
DSM 44233]
Length=247
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/252 (32%), Positives = 113/252 (45%), Gaps = 37/252 (14%)
Query 23 DDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI 82
DD DAAYVLGALSAADRR +E HL C C+ +V L G+P LL+ D AI
Sbjct 7 DDDLLCHDDAAYVLGALSAADRRAYEEHLRECQTCQASVRRLAGMPGLLALAAPD---AI 63
Query 83 SESAPTVVASGLSPELLPSLLAAVHRRRRRTRLITWVASSAAA---AVLAIGVLVGVQGH 139
++ P V P LLP+LL R RR R + A AVL + ++ +
Sbjct 64 GDADPPV-----PPSLLPTLLRRARRADRRRRRLVGGVVGGLAAATAVLLVVLVWAIARP 118
Query 140 SAAPQRAA--------------------VSALPMAQVGTQLLASTVSISGEPWGTFINLR 179
AAP +A +P+ QV + +T+ + + WGT I +
Sbjct 119 GAAPTNSADAGTSTSASAGSSAGPIAAPDETVPLDQVLPGPMTATLELDDKRWGTAITVV 178
Query 180 CVCLAPPYAS--HDTLAMVVVGRDGSQTRLATWLAEPGHTATPAGSISTPVDQIAAVQVV 237
C S +D + VV DG T +W PG TA + + D I+A ++
Sbjct 179 CSYEQSMRGSVPYD---LAVVDTDGQVTSAGSWSGVPGVTARVPVATAVTRDHISAFEIR 235
Query 238 AADTGQVLLQRS 249
AD G+ +L+ S
Sbjct 236 LAD-GRTILRGS 246
>gi|302544961|ref|ZP_07297303.1| putative membrane protein [Streptomyces hygroscopicus ATCC 53653]
gi|302462579|gb|EFL25672.1| putative membrane protein [Streptomyces himastatinicus ATCC 53653]
Length=257
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/206 (30%), Positives = 90/206 (44%), Gaps = 26/206 (12%)
Query 23 DDHHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRDEVAAI 82
D H A+ AY LG L AAD FE HL GC C + L G+P LL+ D +
Sbjct 7 DQQHTAV--GAYALGVLDAADAARFEEHLIGCERCAAELDGLMGIPPLLADYATD-ADGL 63
Query 83 SESAPTVVASGLSPELLPSLL--AAVHRRRRRTRLITWVASSAAAAV---LAIGVLVGVQ 137
+ P + + PE+L LL V RR + R + VA++ V LA +
Sbjct 64 AVRDPATLTARPGPEMLDRLLDEVTVSRRTKNRRRLFLVAAAGLMIVGGPLAGAAVTSGS 123
Query 138 GHSAAPQRAAVSALPMAQV-------------GTQLLASTVSISGEPWGTFINLRCVCLA 184
++A AQV GT++ AS VS++ + WGT I L+ L
Sbjct 124 DDGGGGTNPPIAAANPAQVAFDQGKKYSSVDPGTKVDAS-VSLAQKGWGTAIALKLGNLK 182
Query 185 PPYASHDTLAMVVVGRDGSQTRLATW 210
P + ++ +G+DG + + TW
Sbjct 183 GPKSCD----LIAIGKDGHEETVTTW 204
>gi|269958056|ref|YP_003327845.1| putative transmembrane anti-sigma factor [Xylanimonas cellulosilytica
DSM 15894]
gi|269306737|gb|ACZ32287.1| putative transmembrane anti-sigma factor [Xylanimonas cellulosilytica
DSM 15894]
Length=273
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/53 (55%), Positives = 35/53 (67%), Gaps = 0/53 (0%)
Query 25 HHYAMWDAAYVLGALSAADRREFEAHLAGCPECRGAVTELCGVPALLSQLDRD 77
YA WDAAYVLGAL A+RRE+ AHL C CR AV E+ +P LL+ + D
Sbjct 3 DRYAHWDAAYVLGALGPAERREYAAHLTACEACRTAVAEIAALPGLLASVPAD 55
Lambda K H
0.318 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 358945203960
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40