BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv0740
Length=175
Score E
Sequences producing significant alignments: (Bits) Value
gi|148821945|ref|YP_001286699.1| hypothetical protein TBFG_10754... 363 4e-99
gi|15607880|ref|NP_215254.1| hypothetical protein Rv0740 [Mycoba... 362 1e-98
gi|340625760|ref|YP_004744212.1| hypothetical protein MCAN_07451... 359 9e-98
gi|15840150|ref|NP_335187.1| hypothetical protein MT0766 [Mycoba... 250 7e-65
gi|254231058|ref|ZP_04924385.1| conserved hypothetical protein [... 210 7e-53
gi|306970972|ref|ZP_07483633.1| hypothetical protein TMJG_03967 ... 168 3e-40
gi|294996225|ref|ZP_06801916.1| hypothetical protein Mtub2_17401... 167 4e-40
gi|15840164|ref|NP_335201.1| hypothetical protein MT0774 [Mycoba... 167 7e-40
gi|148821955|ref|YP_001286709.1| hypothetical protein TBFG_10764... 159 2e-37
gi|15607890|ref|NP_215264.1| hypothetical protein Rv0750 [Mycoba... 157 5e-37
gi|308379859|ref|ZP_07487873.2| hypothetical protein TMKG_03458 ... 151 3e-35
gi|167966633|ref|ZP_02548910.1| hypothetical protein MtubH3_0059... 150 8e-35
gi|306796514|ref|ZP_07434816.1| hypothetical protein TMFG_03913 ... 125 2e-27
gi|15840149|ref|NP_335186.1| hypothetical protein MT0765 [Mycoba... 110 6e-23
gi|213648881|ref|ZP_03378934.1| hypothetical protein SentesTy_17... 80.5 8e-14
gi|31280790|gb|AAM51916.1| envelope glycoprotein gp41 domain [Hu... 38.5 0.34
gi|32811426|gb|AAP87742.1| envelope glycoprotein [Human immunode... 38.1 0.45
gi|74229335|gb|ABA00283.1| envelope glycoprotein [Human immunode... 38.1 0.54
gi|94498747|ref|ZP_01305296.1| hypothetical protein SKA58_14342 ... 38.1 0.55
gi|61741742|gb|AAX54757.1| envelope glycoprotein [Human immunode... 37.4 0.80
gi|124358424|gb|ABN05662.1| envelope glycoprotein [Human immunod... 37.4 0.84
gi|124358420|gb|ABN05660.1| envelope glycoprotein [Human immunod... 37.4 0.87
gi|32811394|gb|AAP87726.1| envelope glycoprotein [Human immunode... 37.4 0.87
gi|61741752|gb|AAX54762.1| envelope glycoprotein [Human immunode... 37.4 0.87
gi|124358422|gb|ABN05661.1| envelope glycoprotein [Human immunod... 37.4 0.93
gi|32811456|gb|AAP87757.1| envelope glycoprotein [Human immunode... 37.0 1.00
gi|15216573|gb|AAK92318.1|AF331107_1 envelope glycoprotein [Huma... 37.0 1.0
gi|195934038|gb|ACG58390.1| envelope glycoprotein [Human immunod... 37.0 1.1
gi|112379257|gb|ABI16411.1| envelope glycoprotein [Human immunod... 37.0 1.1
gi|194275057|gb|ACF38198.1| envelope glycoprotein [Human immunod... 37.0 1.2
gi|111434248|gb|ABH09959.1| envelope glycoprotein [Human immunod... 37.0 1.2
gi|45644052|gb|AAS72711.1| envelope glycoprotein [Human immunode... 37.0 1.2
gi|74229355|gb|ABA00293.1| envelope glycoprotein [Human immunode... 36.6 1.3
gi|1145643|gb|AAB37176.1| envelope glycoprotein [Human immunodef... 36.6 1.3
gi|310795557|gb|EFQ31018.1| beta-ketoacyl synthase domain-contai... 36.6 1.4
gi|18253692|gb|AAL66585.1| envelope glycoprotein [Human immunode... 36.6 1.6
gi|262341628|gb|ACY54464.1| envelope glycoprotein [Human immunod... 36.2 1.7
gi|308231443|gb|ADO24428.1| envelope glycoprotein [Human immunod... 36.2 1.7
gi|15216599|gb|AAK92331.1|AF331120_1 envelope glycoprotein [Huma... 36.2 1.7
gi|145222676|ref|YP_001133354.1| hypothetical protein Mflv_2088 ... 36.2 1.8
gi|315443140|ref|YP_004076019.1| hypothetical protein Mspyr1_151... 36.2 1.8
gi|5359639|gb|AAD42747.1| envelope glycoprotein [Human immunodef... 36.2 1.9
gi|156858064|gb|ABU96374.1| envelope glycoprotein [Human immunod... 36.2 2.0
gi|32811398|gb|AAP87728.1| envelope glycoprotein [Human immunode... 35.8 2.1
gi|110734898|gb|ABG89019.1| envelope glycoprotein [Human immunod... 35.8 2.2
gi|18253690|gb|AAL66584.1| envelope glycoprotein [Human immunode... 35.8 2.2
gi|308231435|gb|ADO24424.1| envelope glycoprotein [Human immunod... 35.8 2.3
gi|183982276|ref|YP_001850567.1| antibiotic ABC transporter ATP-... 35.8 2.3
gi|298202531|gb|ADI60655.1| envelope glycoprotein [Human immunod... 35.8 2.4
gi|308231445|gb|ADO24429.1| envelope glycoprotein [Human immunod... 35.8 2.4
>gi|148821945|ref|YP_001286699.1| hypothetical protein TBFG_10754 [Mycobacterium tuberculosis F11]
gi|167968301|ref|ZP_02550578.1| hypothetical protein MtubH3_09829 [Mycobacterium tuberculosis
H37Ra]
gi|253797684|ref|YP_003030685.1| hypothetical protein TBMG_00754 [Mycobacterium tuberculosis KZN
1435]
35 more sequence titles
Length=202
Score = 363 bits (933), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct 28 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 87
Query 61 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD 120
CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD
Sbjct 88 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD 147
Query 121 VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 175
VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct 148 VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 202
>gi|15607880|ref|NP_215254.1| hypothetical protein Rv0740 [Mycobacterium tuberculosis H37Rv]
gi|31791926|ref|NP_854419.1| hypothetical protein Mb0761 [Mycobacterium bovis AF2122/97]
gi|121636662|ref|YP_976885.1| hypothetical protein BCG_0790 [Mycobacterium bovis BCG str. Pasteur
1173P2]
30 more sequence titles
Length=175
Score = 362 bits (929), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
Query 61 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD 120
CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD
Sbjct 61 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD 120
Query 121 VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 175
VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct 121 VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 175
>gi|340625760|ref|YP_004744212.1| hypothetical protein MCAN_07451 [Mycobacterium canettii CIPT
140010059]
gi|340003950|emb|CCC43085.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=175
Score = 359 bits (921), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)
Query 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
Query 61 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD 120
CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGT VELSKLAD
Sbjct 61 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTGVELSKLAD 120
Query 121 VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 175
VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct 121 VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 175
>gi|15840150|ref|NP_335187.1| hypothetical protein MT0766 [Mycobacterium tuberculosis CDC1551]
gi|13880302|gb|AAK45001.1| hypothetical protein MT0766 [Mycobacterium tuberculosis CDC1551]
Length=120
Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)
Query 56 MMRLECPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVEL 115
MMRLECPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVEL
Sbjct 1 MMRLECPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVEL 60
Query 116 SKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 175
SKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct 61 SKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG 120
>gi|254231058|ref|ZP_04924385.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124600117|gb|EAY59127.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=210
Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 100/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)
Query 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct 28 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 87
Query 61 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGN 101
CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVG
Sbjct 88 CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGQ 128
>gi|306970972|ref|ZP_07483633.1| hypothetical protein TMJG_03967 [Mycobacterium tuberculosis SUMu010]
gi|308231627|ref|ZP_07413204.2| hypothetical protein TMAG_03763 [Mycobacterium tuberculosis SUMu001]
gi|308216533|gb|EFO75932.1| hypothetical protein TMAG_03763 [Mycobacterium tuberculosis SUMu001]
gi|308359428|gb|EFP48279.1| hypothetical protein TMJG_03967 [Mycobacterium tuberculosis SUMu010]
Length=89
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/87 (94%), Positives = 82/87 (95%), Gaps = 0/87 (0%)
Query 89 LGYLGHVRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR 148
L YLG VRAIVG+C I IMPMGT VELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR
Sbjct 3 LNYLGQVRAIVGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR 62
Query 149 NQPLGWYTQGLAPYLPGLSDPKDAAEG 175
NQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct 63 NQPLGWYTQGLAPYLPGLSDPKDAAEG 89
>gi|294996225|ref|ZP_06801916.1| hypothetical protein Mtub2_17401 [Mycobacterium tuberculosis
210]
gi|297633242|ref|ZP_06951022.1| hypothetical protein MtubK4_03920 [Mycobacterium tuberculosis
KZN 4207]
gi|297730222|ref|ZP_06959340.1| hypothetical protein MtubKR_03975 [Mycobacterium tuberculosis
KZN R506]
gi|313657549|ref|ZP_07814429.1| hypothetical protein MtubKV_03965 [Mycobacterium tuberculosis
KZN V2475]
Length=81
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 95 VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 154
+RAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 1 MRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
Query 155 YTQGLAPYLPGLSDPKDAAEG 175
YTQGLAPYLPGLSDPKDAAEG
Sbjct 61 YTQGLAPYLPGLSDPKDAAEG 81
>gi|15840164|ref|NP_335201.1| hypothetical protein MT0774 [Mycobacterium tuberculosis CDC1551]
gi|148660526|ref|YP_001282049.1| hypothetical protein MRA_0759 [Mycobacterium tuberculosis H37Ra]
gi|253797695|ref|YP_003030696.1| hypothetical protein TBMG_00764 [Mycobacterium tuberculosis KZN
1435]
22 more sequence titles
Length=89
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/87 (92%), Positives = 82/87 (95%), Gaps = 0/87 (0%)
Query 89 LGYLGHVRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR 148
L YLG VRAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWR
Sbjct 3 LNYLGQVRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWR 62
Query 149 NQPLGWYTQGLAPYLPGLSDPKDAAEG 175
NQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct 63 NQPLGWYTQGLAPYLPGLSDPKDAAEG 89
>gi|148821955|ref|YP_001286709.1| hypothetical protein TBFG_10764 [Mycobacterium tuberculosis F11]
gi|148720482|gb|ABR05107.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
Length=81
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/81 (94%), Positives = 78/81 (97%), Gaps = 0/81 (0%)
Query 95 VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 154
+RAIVG+C I IMPMGT VELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 1 MRAIVGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
Query 155 YTQGLAPYLPGLSDPKDAAEG 175
YTQGLAPYLPGLSDPKDAAEG
Sbjct 61 YTQGLAPYLPGLSDPKDAAEG 81
>gi|15607890|ref|NP_215264.1| hypothetical protein Rv0750 [Mycobacterium tuberculosis H37Rv]
gi|31791937|ref|NP_854430.1| hypothetical protein Mb0772 [Mycobacterium bovis AF2122/97]
gi|121636673|ref|YP_976896.1| hypothetical protein BCG_0801 [Mycobacterium bovis BCG str. Pasteur
1173P2]
36 more sequence titles
Length=81
Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/81 (93%), Positives = 78/81 (97%), Gaps = 0/81 (0%)
Query 95 VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 154
+RAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct 1 MRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW 60
Query 155 YTQGLAPYLPGLSDPKDAAEG 175
YTQGLAPYLPGLSDPKDAAEG
Sbjct 61 YTQGLAPYLPGLSDPKDAAEG 81
>gi|308379859|ref|ZP_07487873.2| hypothetical protein TMKG_03458 [Mycobacterium tuberculosis SUMu011]
gi|308363335|gb|EFP52186.1| hypothetical protein TMKG_03458 [Mycobacterium tuberculosis SUMu011]
Length=77
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/77 (94%), Positives = 74/77 (97%), Gaps = 0/77 (0%)
Query 99 VGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 158
+G+C I IMPMGT VELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG
Sbjct 1 MGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 60
Query 159 LAPYLPGLSDPKDAAEG 175
LAPYLPGLSDPKDAAEG
Sbjct 61 LAPYLPGLSDPKDAAEG 77
>gi|167966633|ref|ZP_02548910.1| hypothetical protein MtubH3_00591 [Mycobacterium tuberculosis
H37Ra]
Length=77
Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/77 (93%), Positives = 74/77 (97%), Gaps = 0/77 (0%)
Query 99 VGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 158
+G+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG
Sbjct 1 MGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG 60
Query 159 LAPYLPGLSDPKDAAEG 175
LAPYLPGLSDPKDAAEG
Sbjct 61 LAPYLPGLSDPKDAAEG 77
>gi|306796514|ref|ZP_07434816.1| hypothetical protein TMFG_03913 [Mycobacterium tuberculosis SUMu006]
gi|308343012|gb|EFP31863.1| hypothetical protein TMFG_03913 [Mycobacterium tuberculosis SUMu006]
Length=61
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/61 (97%), Positives = 61/61 (100%), Gaps = 0/61 (0%)
Query 115 LSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE 174
+SKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE
Sbjct 1 MSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE 60
Query 175 G 175
G
Sbjct 61 G 61
>gi|15840149|ref|NP_335186.1| hypothetical protein MT0765 [Mycobacterium tuberculosis CDC1551]
gi|13880301|gb|AAK45000.1| hypothetical protein MT0765 [Mycobacterium tuberculosis CDC1551]
Length=82
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/53 (99%), Positives = 52/53 (99%), Gaps = 0/53 (0%)
Query 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGV 53
MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEG
Sbjct 28 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGF 80
>gi|213648881|ref|ZP_03378934.1| hypothetical protein SentesTy_17323 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length=37
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/37 (100%), Positives = 37/37 (100%), Gaps = 0/37 (0%)
Query 11 ETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGE 47
ETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGE
Sbjct 1 ETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGE 37
>gi|31280790|gb|AAM51916.1| envelope glycoprotein gp41 domain [Human immunodeficiency virus
1]
Length=117
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (32%), Positives = 34/64 (54%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T EE WDN W W + YT T+ I Q + + + E +D++ L+
Sbjct 48 VPWNSSWSNKTYEEIWDNMTWLQWDKEISNYTETIYTLIEQSQNQQEKNE--QDLLALDK 105
Query 62 PAGL 65
A L
Sbjct 106 WASL 109
>gi|32811426|gb|AAP87742.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=138
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 37/64 (58%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T EE W+N W W + YT T+ + +++ ++E + +D++ L+
Sbjct 61 VPWNSSWSNKTKEEIWENMTWIQWEREISNYTDTI-YRLLEISQNQQE-QNEKDLLSLDS 118
Query 62 PAGL 65
AGL
Sbjct 119 WAGL 122
>gi|74229335|gb|ABA00283.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=150
Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 33/64 (52%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT ++++ EE WDN W W + YT + I Q + + + E +D++ L+
Sbjct 66 VPWNTSWSNKSFEEIWDNMTWIQWDREVSNYTHLIYXLIEQSQNQQEKNE--QDLLALDS 123
Query 62 PAGL 65
A L
Sbjct 124 WASL 127
>gi|94498747|ref|ZP_01305296.1| hypothetical protein SKA58_14342 [Sphingomonas sp. SKA58]
gi|94421797|gb|EAT06849.1| hypothetical protein SKA58_14342 [Sphingomonas sp. SKA58]
Length=304
Score = 38.1 bits (87), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/95 (30%), Positives = 45/95 (48%), Gaps = 3/95 (3%)
Query 77 ITGQRPGEFVF-VLGYLGHVRAIVGNCYIEIM--PMGTRVELSKLADVALDIGRSVGCSA 133
I G G F+F +L LG + ++G Y+ ++ G + S A +AL GR S
Sbjct 91 IVGAGMGVFIFRLLQSLGQIDTVIGILYVLMLGGIGGLMAKESIQALIALKTGRKPQASK 150
Query 134 YENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSD 168
+ + +P +WR G Y LAP+L G++
Sbjct 151 RRHHPLVAALPMRWRFYRSGLYISPLAPFLLGMAT 185
>gi|61741742|gb|AAX54757.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=351
Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT +++T E WDN W W + YT T+ + +++ ++E + +D++ L+
Sbjct 97 VPWNTSWSNKTIGEIWDNMTWIQWEREISNYTDTI-YRLLEISQNQQE-QNEKDLLALDS 154
Query 62 PAGL 65
AGL
Sbjct 155 WAGL 158
>gi|124358424|gb|ABN05662.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=345
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT ++++ EE WDN W W + YT T+ I + + + + E +D++ L+
Sbjct 97 VPWNTSWSNKSXEEIWDNMTWLQWDREISNYTNTIYQLIEEAQNQQEKNE--QDLLSLDQ 154
Query 62 PAGL 65
A L
Sbjct 155 WASL 158
>gi|124358420|gb|ABN05660.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|170279716|gb|ACB11838.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=345
Score = 37.4 bits (85), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT ++++ EE WDN W W + YT T+ I + + + + E +D++ L+
Sbjct 97 VPWNTSWSNKSXEEIWDNMTWLQWDREISNYTNTIYQLIEEAQNQQEKNE--QDLLSLDQ 154
Query 62 PAGL 65
A L
Sbjct 155 WASL 158
>gi|32811394|gb|AAP87726.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=145
Score = 37.4 bits (85), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 37/64 (58%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T EE W+N W W + + YT T+ + +++ ++E + +D++ L+
Sbjct 66 VPWNSSWSNKTKEEIWENMTWIQWENEISNYTDTI-YRLLEISQNQQE-KNEKDLLALDS 123
Query 62 PAGL 65
A L
Sbjct 124 WASL 127
>gi|61741752|gb|AAX54762.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=351
Score = 37.4 bits (85), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N +++T +E WDN W W + YT T+ + +++ ++E + +D++ L+
Sbjct 97 VPWNNSWSNKTIKEIWDNMTWIQWEREISNYTDTIY-RLLEISQNQQE-QNEKDLLALDS 154
Query 62 PAGL 65
AGL
Sbjct 155 WAGL 158
>gi|124358422|gb|ABN05661.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|170279714|gb|ACB11837.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=345
Score = 37.4 bits (85), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT ++++ EE WDN W W + YT T+ I + + + + E +D++ L+
Sbjct 97 VPWNTSWSNKSQEEIWDNMTWLQWDREISNYTNTIYQLIEEAQNQQEKNE--QDLLSLDQ 154
Query 62 PAGL 65
A L
Sbjct 155 WASL 158
>gi|32811456|gb|AAP87757.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=153
Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT +++T EE W+N W W + YT T+ + +++ ++E + +D++ L+
Sbjct 66 VPWNTSWSNKTKEEIWENMTWIQWEREISNYTDTI-YRLLEISQNQQE-QNEKDLLALDS 123
Query 62 PAGL 65
A L
Sbjct 124 WASL 127
>gi|15216573|gb|AAK92318.1|AF331107_1 envelope glycoprotein [Human immunodeficiency virus 1]
Length=133
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 37/64 (58%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T EE W+N W W + YT T+ + +++ ++E + +D++ L+
Sbjct 65 VPWNSTWSNKTNEEIWNNMTWIQWEREISNYTDTI-YRLLEISQTQQE-QNEKDLLSLDS 122
Query 62 PAGL 65
AGL
Sbjct 123 WAGL 126
>gi|195934038|gb|ACG58390.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|238734218|gb|ACR55450.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=866
Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 13/35 (38%), Positives = 21/35 (60%), Gaps = 0/35 (0%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTV 36
+P N+ +++T EE WDN W W + YT+T+
Sbjct 611 VPWNSTWSNKTQEEIWDNMTWLQWDKEISNYTKTI 645
>gi|112379257|gb|ABI16411.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=173
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT ++++ EE WDN W W DRE + ++ + A ++E + ++++ L+
Sbjct 98 VPWNTSWSNKSLEEIWDNMTWMQW-DREISNYTSFIYTLIEKAQNQQE-KNEQELLALDT 155
Query 62 PAGL 65
AGL
Sbjct 156 WAGL 159
>gi|194275057|gb|ACF38198.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=225
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT ++++ EE WDN W W + YT + I Q + + E +D++ L+
Sbjct 126 VPWNTSWSNKSFEEIWDNMTWIQWDREVSNYTHLIYXLIEQSQXQQEKNE--QDLLALDS 183
Query 62 PAGL 65
A L
Sbjct 184 WASL 187
>gi|111434248|gb|ABH09959.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=183
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 33/64 (52%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N +++T E WDN W W + YT+ + I Q + + + E +D++ L+
Sbjct 92 VPWNNSWSNKTFNEIWDNMTWIQWEREISNYTQEIYSLIEQAQNQQEKNE--QDLLALDK 149
Query 62 PAGL 65
AGL
Sbjct 150 WAGL 153
>gi|45644052|gb|AAS72711.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=132
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 34/64 (54%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T E+ WDN W W + YT + I + + + + E +D++ L+
Sbjct 56 VPWNSSWSNKTYEDIWDNMTWLQWDKEISNYTSIIYTLIEESQNQQEKNE--KDLLALDK 113
Query 62 PAGL 65
AGL
Sbjct 114 WAGL 117
>gi|74229355|gb|ABA00293.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=148
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P NT +++T EE WDN W W + YT+ + I + + + + E +D++ L+
Sbjct 64 VPWNTSWSNKTYEEIWDNMTWIQWEREISNYTQXIYXLIEESQNQQEKNE--QDLLALDK 121
Query 62 PAGL 65
A L
Sbjct 122 WANL 125
>gi|1145643|gb|AAB37176.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=855
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/59 (29%), Positives = 34/59 (58%), Gaps = 2/59 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
+P N+ +++T +E WDN W W + YT T+ + +V+ ++E E +D++ L+
Sbjct 600 VPWNSSWSNKTQKEIWDNMTWMQWDKEISNYTDTI-YRLLEVSQNQQE-ENEKDLLALD 656
>gi|310795557|gb|EFQ31018.1| beta-ketoacyl synthase domain-containing protein [Glomerella
graminicola M1.001]
Length=2460
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/98 (29%), Positives = 48/98 (49%), Gaps = 10/98 (10%)
Query 31 GYTRTVTVS---ICQVADGEREAEGVRDMMRLECPAG----LDLRTPNPEAYEITGQRPG 83
G+ R VS I +++D R+ + +R ++R C AG L L TPNPE +E +R
Sbjct 253 GFARGEGVSAIYIKRLSDAVRDGDPIRSVIRSTCTAGNGRTLGLTTPNPEIHERLMRRGH 312
Query 84 EFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLADV 121
G + + C+ P+G +E+S +A++
Sbjct 313 RLA---GVTDLSKTAMVECHGTGTPVGDPLEVSAVANI 347
>gi|18253692|gb|AAL66585.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=133
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ ++++AEE WDN W W DRE + ++ +++ ++E + +D++ L+
Sbjct 56 VPWNSSWSNKSAEEIWDNMTWMEW-DREINNYTGIIYNLLEISQNQQE-QNEKDLLSLDS 113
Query 62 PAGL 65
L
Sbjct 114 WRNL 117
>gi|262341628|gb|ACY54464.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=134
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 35/64 (55%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T E WDN W W + YT+T+ + I + + + + E +D++ L+
Sbjct 64 VPWNSSWSNKTYNEIWDNLTWLQWDKEISNYTQTIYLLIEESQNQQEKNE--QDLLALDK 121
Query 62 PAGL 65
A L
Sbjct 122 WASL 125
>gi|308231443|gb|ADO24428.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=199
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 33/64 (52%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +S+T ++ WDN W W + YT T+ I + + + + E D++ L+
Sbjct 97 VPWNSTWSSKTYDDIWDNMTWLQWDKEISNYTNTIYTLIEEAQNQQEKNE--HDLLTLDK 154
Query 62 PAGL 65
A L
Sbjct 155 WASL 158
>gi|15216599|gb|AAK92331.1|AF331120_1 envelope glycoprotein [Human immunodeficiency virus 1]
Length=133
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T EE W+N W W + YT T+ + +++ ++E + +D++ L+
Sbjct 65 VPWNSSWSNKTKEEIWENMTWIQWEREISNYTDTI-YKLLEISQNQQE-QNEKDLLALDS 122
Query 62 PAGL 65
A L
Sbjct 123 WASL 126
>gi|145222676|ref|YP_001133354.1| hypothetical protein Mflv_2088 [Mycobacterium gilvum PYR-GCK]
gi|145215162|gb|ABP44566.1| hypothetical protein Mflv_2088 [Mycobacterium gilvum PYR-GCK]
Length=225
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (37%), Positives = 32/63 (51%), Gaps = 4/63 (6%)
Query 17 WDNSLWCSWGDRETGYTRT--VTVSICQVADGEREAEGVRDMMRLECPAGLDLRTPNPEA 74
+ +S C GDR RT T+ +C+ ADG E +GVR +R LD TP P
Sbjct 131 FVDSARCDSGDRPIAIARTERSTMVVCESADGTLEYQGVR--LRDGASLTLDDVTPIPAG 188
Query 75 YEI 77
+E+
Sbjct 189 FEV 191
>gi|315443140|ref|YP_004076019.1| hypothetical protein Mspyr1_15140 [Mycobacterium sp. Spyr1]
gi|315261443|gb|ADT98184.1| hypothetical protein Mspyr1_15140 [Mycobacterium sp. Spyr1]
Length=215
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (37%), Positives = 32/63 (51%), Gaps = 4/63 (6%)
Query 17 WDNSLWCSWGDRETGYTRT--VTVSICQVADGEREAEGVRDMMRLECPAGLDLRTPNPEA 74
+ +S C GDR RT T+ +C+ ADG E +GVR +R LD TP P
Sbjct 121 FVDSARCDSGDRPIAIARTERSTMVVCESADGTLEYQGVR--LRDGASLTLDDVTPIPAG 178
Query 75 YEI 77
+E+
Sbjct 179 FEV 181
>gi|5359639|gb|AAD42747.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=122
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/65 (28%), Positives = 34/65 (53%), Gaps = 2/65 (3%)
Query 1 MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE 60
+P N+ +++T +E WDN W W + YTRT+ + + + + E +D++ L+
Sbjct 47 FVPWNSSWSNKTQDEIWDNMTWLQWDKEISNYTRTIYRLLEDSQNQQEKNE--QDLLALD 104
Query 61 CPAGL 65
A L
Sbjct 105 KWANL 109
>gi|156858064|gb|ABU96374.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=230
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 33/64 (52%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T E WDN W W YT T+ + + + + + E +D++ L+
Sbjct 129 VPWNSSWSNKTYENIWDNMTWLQWDKEINNYTNTIYTLLEESQNQQEKNE--QDLLALDK 186
Query 62 PAGL 65
AGL
Sbjct 187 WAGL 190
>gi|32811398|gb|AAP87728.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=153
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ ++++ EE W N W W + YT T+ + +++ ++E + +D++ L+
Sbjct 66 VPWNSSWSNKSTEEIWGNMTWIQWDREISNYTDTI-YRLIEISQNQQE-QNEKDLLALDS 123
Query 62 PAGL 65
AGL
Sbjct 124 WAGL 127
>gi|110734898|gb|ABG89019.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=150
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P+NT +++T +E W+N W W + YT+ + I + + + + E +D++ L+
Sbjct 66 VPRNTSWSNKTHDEIWNNMTWIEWDKEISNYTQQIYSLIEESQNQQEKNE--QDLLALDK 123
Query 62 PAGL 65
A L
Sbjct 124 WASL 127
>gi|18253690|gb|AAL66584.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=133
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ ++++A+E WDN W W DRE + ++ +++ ++E + +D++ L+
Sbjct 56 VPWNSSWSNKSAKEIWDNMTWMEW-DREISNYTDIIYNLLEISQNQQE-QNEKDLLSLDS 113
Query 62 PAGL 65
L
Sbjct 114 WKNL 117
>gi|308231435|gb|ADO24424.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=199
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 37/64 (58%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T E+ W+N W W D+E G T+ + + + ++E + +D++ L+
Sbjct 97 VPWNSSWSNKTYEDIWNNMTWLQW-DKEVGNYTTLIYDLLEKSQNQQE-KNEQDLLALDK 154
Query 62 PAGL 65
AGL
Sbjct 155 WAGL 158
>gi|183982276|ref|YP_001850567.1| antibiotic ABC transporter ATP-binding protein [Mycobacterium
marinum M]
gi|183175602|gb|ACC40712.1| unidentified antibiotic-transport ATP-binding protein ABC transporter
[Mycobacterium marinum M]
Length=319
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/123 (29%), Positives = 50/123 (41%), Gaps = 17/123 (13%)
Query 13 AEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLECPAGLDLR---T 69
AEE D + G V++ + E G +D +R P LDL +
Sbjct 206 AEELADRLVIIDHG-----------VTVAEGTPSELMRSGAKDQLRFTAPPRLDLSLLVS 254
Query 70 PNPEAYEITGQRPGEFVFVLGYLGHVRAIVGN--CYIEIMPMGTRVELSKLADVALDI-G 126
PE Y +T PGE++ V A V I+++ RVE L DV LD+ G
Sbjct 255 ALPEDYRVTEVTPGEYLVEGSVDPQVLAAVTAWCARIDVLATDMRVEQRSLEDVFLDLTG 314
Query 127 RSV 129
R +
Sbjct 315 RKL 317
>gi|298202531|gb|ADI60655.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=135
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 35/64 (55%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T +E WDN W W + YT+T+ I + + + + E +D++ L+
Sbjct 65 VPWNSSWSNKTYDEIWDNMTWLQWDKEISNYTQTIYQLIEESQNQQEKNE--QDLLALDK 122
Query 62 PAGL 65
A L
Sbjct 123 WASL 126
>gi|308231445|gb|ADO24429.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=199
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/64 (29%), Positives = 36/64 (57%), Gaps = 2/64 (3%)
Query 2 LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC 61
+P N+ +++T E+ WDN W W D+E G + + + + ++E + +D++ L+
Sbjct 97 VPWNSSWSNKTYEDIWDNMTWLQW-DKEVGNYTNLIYDLLEKSQNQQE-KNEQDLLALDK 154
Query 62 PAGL 65
AGL
Sbjct 155 WAGL 158
Lambda K H
0.318 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 145800812160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40