BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0740

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|148821945|ref|YP_001286699.1|  hypothetical protein TBFG_10754...   363    4e-99
gi|15607880|ref|NP_215254.1|  hypothetical protein Rv0740 [Mycoba...   362    1e-98
gi|340625760|ref|YP_004744212.1|  hypothetical protein MCAN_07451...   359    9e-98
gi|15840150|ref|NP_335187.1|  hypothetical protein MT0766 [Mycoba...   250    7e-65
gi|254231058|ref|ZP_04924385.1|  conserved hypothetical protein [...   210    7e-53
gi|306970972|ref|ZP_07483633.1|  hypothetical protein TMJG_03967 ...   168    3e-40
gi|294996225|ref|ZP_06801916.1|  hypothetical protein Mtub2_17401...   167    4e-40
gi|15840164|ref|NP_335201.1|  hypothetical protein MT0774 [Mycoba...   167    7e-40
gi|148821955|ref|YP_001286709.1|  hypothetical protein TBFG_10764...   159    2e-37
gi|15607890|ref|NP_215264.1|  hypothetical protein Rv0750 [Mycoba...   157    5e-37
gi|308379859|ref|ZP_07487873.2|  hypothetical protein TMKG_03458 ...   151    3e-35
gi|167966633|ref|ZP_02548910.1|  hypothetical protein MtubH3_0059...   150    8e-35
gi|306796514|ref|ZP_07434816.1|  hypothetical protein TMFG_03913 ...   125    2e-27
gi|15840149|ref|NP_335186.1|  hypothetical protein MT0765 [Mycoba...   110    6e-23
gi|213648881|ref|ZP_03378934.1|  hypothetical protein SentesTy_17...  80.5    8e-14
gi|31280790|gb|AAM51916.1|  envelope glycoprotein gp41 domain [Hu...  38.5    0.34 
gi|32811426|gb|AAP87742.1|  envelope glycoprotein [Human immunode...  38.1    0.45 
gi|74229335|gb|ABA00283.1|  envelope glycoprotein [Human immunode...  38.1    0.54 
gi|94498747|ref|ZP_01305296.1|  hypothetical protein SKA58_14342 ...  38.1    0.55 
gi|61741742|gb|AAX54757.1|  envelope glycoprotein [Human immunode...  37.4    0.80 
gi|124358424|gb|ABN05662.1|  envelope glycoprotein [Human immunod...  37.4    0.84 
gi|124358420|gb|ABN05660.1|  envelope glycoprotein [Human immunod...  37.4    0.87 
gi|32811394|gb|AAP87726.1|  envelope glycoprotein [Human immunode...  37.4    0.87 
gi|61741752|gb|AAX54762.1|  envelope glycoprotein [Human immunode...  37.4    0.87 
gi|124358422|gb|ABN05661.1|  envelope glycoprotein [Human immunod...  37.4    0.93 
gi|32811456|gb|AAP87757.1|  envelope glycoprotein [Human immunode...  37.0    1.00 
gi|15216573|gb|AAK92318.1|AF331107_1  envelope glycoprotein [Huma...  37.0    1.0  
gi|195934038|gb|ACG58390.1|  envelope glycoprotein [Human immunod...  37.0    1.1  
gi|112379257|gb|ABI16411.1|  envelope glycoprotein [Human immunod...  37.0    1.1  
gi|194275057|gb|ACF38198.1|  envelope glycoprotein [Human immunod...  37.0    1.2  
gi|111434248|gb|ABH09959.1|  envelope glycoprotein [Human immunod...  37.0    1.2  
gi|45644052|gb|AAS72711.1|  envelope glycoprotein [Human immunode...  37.0    1.2  
gi|74229355|gb|ABA00293.1|  envelope glycoprotein [Human immunode...  36.6    1.3  
gi|1145643|gb|AAB37176.1|  envelope glycoprotein [Human immunodef...  36.6    1.3  
gi|310795557|gb|EFQ31018.1|  beta-ketoacyl synthase domain-contai...  36.6    1.4  
gi|18253692|gb|AAL66585.1|  envelope glycoprotein [Human immunode...  36.6    1.6  
gi|262341628|gb|ACY54464.1|  envelope glycoprotein [Human immunod...  36.2    1.7  
gi|308231443|gb|ADO24428.1|  envelope glycoprotein [Human immunod...  36.2    1.7  
gi|15216599|gb|AAK92331.1|AF331120_1  envelope glycoprotein [Huma...  36.2    1.7  
gi|145222676|ref|YP_001133354.1|  hypothetical protein Mflv_2088 ...  36.2    1.8  
gi|315443140|ref|YP_004076019.1|  hypothetical protein Mspyr1_151...  36.2    1.8  
gi|5359639|gb|AAD42747.1|  envelope glycoprotein [Human immunodef...  36.2    1.9  
gi|156858064|gb|ABU96374.1|  envelope glycoprotein [Human immunod...  36.2    2.0  
gi|32811398|gb|AAP87728.1|  envelope glycoprotein [Human immunode...  35.8    2.1  
gi|110734898|gb|ABG89019.1|  envelope glycoprotein [Human immunod...  35.8    2.2  
gi|18253690|gb|AAL66584.1|  envelope glycoprotein [Human immunode...  35.8    2.2  
gi|308231435|gb|ADO24424.1|  envelope glycoprotein [Human immunod...  35.8    2.3  
gi|183982276|ref|YP_001850567.1|  antibiotic ABC transporter ATP-...  35.8    2.3  
gi|298202531|gb|ADI60655.1|  envelope glycoprotein [Human immunod...  35.8    2.4  
gi|308231445|gb|ADO24429.1|  envelope glycoprotein [Human immunod...  35.8    2.4  


>gi|148821945|ref|YP_001286699.1| hypothetical protein TBFG_10754 [Mycobacterium tuberculosis F11]
 gi|167968301|ref|ZP_02550578.1| hypothetical protein MtubH3_09829 [Mycobacterium tuberculosis 
H37Ra]
 gi|253797684|ref|YP_003030685.1| hypothetical protein TBMG_00754 [Mycobacterium tuberculosis KZN 
1435]
 35 more sequence titles
 Length=202

 Score =  363 bits (933),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)

Query  1    MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60
            MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct  28   MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  87

Query  61   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD  120
            CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD
Sbjct  88   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD  147

Query  121  VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  175
            VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct  148  VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  202


>gi|15607880|ref|NP_215254.1| hypothetical protein Rv0740 [Mycobacterium tuberculosis H37Rv]
 gi|31791926|ref|NP_854419.1| hypothetical protein Mb0761 [Mycobacterium bovis AF2122/97]
 gi|121636662|ref|YP_976885.1| hypothetical protein BCG_0790 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 30 more sequence titles
 Length=175

 Score =  362 bits (929),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)

Query  1    MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60
            MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct  1    MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60

Query  61   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD  120
            CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD
Sbjct  61   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD  120

Query  121  VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  175
            VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct  121  VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  175


>gi|340625760|ref|YP_004744212.1| hypothetical protein MCAN_07451 [Mycobacterium canettii CIPT 
140010059]
 gi|340003950|emb|CCC43085.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=175

 Score =  359 bits (921),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 174/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)

Query  1    MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60
            MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct  1    MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60

Query  61   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLAD  120
            CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGT VELSKLAD
Sbjct  61   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTGVELSKLAD  120

Query  121  VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  175
            VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct  121  VALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  175


>gi|15840150|ref|NP_335187.1| hypothetical protein MT0766 [Mycobacterium tuberculosis CDC1551]
 gi|13880302|gb|AAK45001.1| hypothetical protein MT0766 [Mycobacterium tuberculosis CDC1551]
Length=120

 Score =  250 bits (638),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  56   MMRLECPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVEL  115
            MMRLECPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVEL
Sbjct  1    MMRLECPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGNCYIEIMPMGTRVEL  60

Query  116  SKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  175
            SKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct  61   SKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAEG  120


>gi|254231058|ref|ZP_04924385.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124600117|gb|EAY59127.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=210

 Score =  210 bits (534),  Expect = 7e-53, Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)

Query  1    MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60
            MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE
Sbjct  28   MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  87

Query  61   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGN  101
            CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVG 
Sbjct  88   CPAGLDLRTPNPEAYEITGQRPGEFVFVLGYLGHVRAIVGQ  128


>gi|306970972|ref|ZP_07483633.1| hypothetical protein TMJG_03967 [Mycobacterium tuberculosis SUMu010]
 gi|308231627|ref|ZP_07413204.2| hypothetical protein TMAG_03763 [Mycobacterium tuberculosis SUMu001]
 gi|308216533|gb|EFO75932.1| hypothetical protein TMAG_03763 [Mycobacterium tuberculosis SUMu001]
 gi|308359428|gb|EFP48279.1| hypothetical protein TMJG_03967 [Mycobacterium tuberculosis SUMu010]
Length=89

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 81/87 (94%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  89   LGYLGHVRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR  148
            L YLG VRAIVG+C I IMPMGT VELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR
Sbjct  3    LNYLGQVRAIVGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR  62

Query  149  NQPLGWYTQGLAPYLPGLSDPKDAAEG  175
            NQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct  63   NQPLGWYTQGLAPYLPGLSDPKDAAEG  89


>gi|294996225|ref|ZP_06801916.1| hypothetical protein Mtub2_17401 [Mycobacterium tuberculosis 
210]
 gi|297633242|ref|ZP_06951022.1| hypothetical protein MtubK4_03920 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730222|ref|ZP_06959340.1| hypothetical protein MtubKR_03975 [Mycobacterium tuberculosis 
KZN R506]
 gi|313657549|ref|ZP_07814429.1| hypothetical protein MtubKV_03965 [Mycobacterium tuberculosis 
KZN V2475]
Length=81

 Score =  167 bits (424),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  95   VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW  154
            +RAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct  1    MRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW  60

Query  155  YTQGLAPYLPGLSDPKDAAEG  175
            YTQGLAPYLPGLSDPKDAAEG
Sbjct  61   YTQGLAPYLPGLSDPKDAAEG  81


>gi|15840164|ref|NP_335201.1| hypothetical protein MT0774 [Mycobacterium tuberculosis CDC1551]
 gi|148660526|ref|YP_001282049.1| hypothetical protein MRA_0759 [Mycobacterium tuberculosis H37Ra]
 gi|253797695|ref|YP_003030696.1| hypothetical protein TBMG_00764 [Mycobacterium tuberculosis KZN 
1435]
 22 more sequence titles
 Length=89

 Score =  167 bits (422),  Expect = 7e-40, Method: Compositional matrix adjust.
 Identities = 80/87 (92%), Positives = 82/87 (95%), Gaps = 0/87 (0%)

Query  89   LGYLGHVRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWR  148
            L YLG VRAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWR
Sbjct  3    LNYLGQVRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWR  62

Query  149  NQPLGWYTQGLAPYLPGLSDPKDAAEG  175
            NQPLGWYTQGLAPYLPGLSDPKDAAEG
Sbjct  63   NQPLGWYTQGLAPYLPGLSDPKDAAEG  89


>gi|148821955|ref|YP_001286709.1| hypothetical protein TBFG_10764 [Mycobacterium tuberculosis F11]
 gi|148720482|gb|ABR05107.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
Length=81

 Score =  159 bits (401),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 76/81 (94%), Positives = 78/81 (97%), Gaps = 0/81 (0%)

Query  95   VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW  154
            +RAIVG+C I IMPMGT VELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct  1    MRAIVGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW  60

Query  155  YTQGLAPYLPGLSDPKDAAEG  175
            YTQGLAPYLPGLSDPKDAAEG
Sbjct  61   YTQGLAPYLPGLSDPKDAAEG  81


>gi|15607890|ref|NP_215264.1| hypothetical protein Rv0750 [Mycobacterium tuberculosis H37Rv]
 gi|31791937|ref|NP_854430.1| hypothetical protein Mb0772 [Mycobacterium bovis AF2122/97]
 gi|121636673|ref|YP_976896.1| hypothetical protein BCG_0801 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 36 more sequence titles
 Length=81

 Score =  157 bits (398),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 75/81 (93%), Positives = 78/81 (97%), Gaps = 0/81 (0%)

Query  95   VRAIVGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW  154
            +RAIVG+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW
Sbjct  1    MRAIVGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGW  60

Query  155  YTQGLAPYLPGLSDPKDAAEG  175
            YTQGLAPYLPGLSDPKDAAEG
Sbjct  61   YTQGLAPYLPGLSDPKDAAEG  81


>gi|308379859|ref|ZP_07487873.2| hypothetical protein TMKG_03458 [Mycobacterium tuberculosis SUMu011]
 gi|308363335|gb|EFP52186.1| hypothetical protein TMKG_03458 [Mycobacterium tuberculosis SUMu011]
Length=77

 Score =  151 bits (382),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 72/77 (94%), Positives = 74/77 (97%), Gaps = 0/77 (0%)

Query  99   VGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG  158
            +G+C I IMPMGT VELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG
Sbjct  1    MGDCVIHIMPMGTGVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG  60

Query  159  LAPYLPGLSDPKDAAEG  175
            LAPYLPGLSDPKDAAEG
Sbjct  61   LAPYLPGLSDPKDAAEG  77


>gi|167966633|ref|ZP_02548910.1| hypothetical protein MtubH3_00591 [Mycobacterium tuberculosis 
H37Ra]
Length=77

 Score =  150 bits (379),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 71/77 (93%), Positives = 74/77 (97%), Gaps = 0/77 (0%)

Query  99   VGNCYIEIMPMGTRVELSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG  158
            +G+C I IMPMGT VELSKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG
Sbjct  1    MGDCVIHIMPMGTGVELSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQG  60

Query  159  LAPYLPGLSDPKDAAEG  175
            LAPYLPGLSDPKDAAEG
Sbjct  61   LAPYLPGLSDPKDAAEG  77


>gi|306796514|ref|ZP_07434816.1| hypothetical protein TMFG_03913 [Mycobacterium tuberculosis SUMu006]
 gi|308343012|gb|EFP31863.1| hypothetical protein TMFG_03913 [Mycobacterium tuberculosis SUMu006]
Length=61

 Score =  125 bits (315),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 59/61 (97%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  115  LSKLADVALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE  174
            +SKLAD+ALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE
Sbjct  1    MSKLADLALDIGRSVGCSAYENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSDPKDAAE  60

Query  175  G  175
            G
Sbjct  61   G  61


>gi|15840149|ref|NP_335186.1| hypothetical protein MT0765 [Mycobacterium tuberculosis CDC1551]
 gi|13880301|gb|AAK45000.1| hypothetical protein MT0765 [Mycobacterium tuberculosis CDC1551]
Length=82

 Score =  110 bits (276),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 52/53 (99%), Positives = 52/53 (99%), Gaps = 0/53 (0%)

Query  1   MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGV  53
           MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEG 
Sbjct  28  MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGF  80


>gi|213648881|ref|ZP_03378934.1| hypothetical protein SentesTy_17323 [Salmonella enterica subsp. 
enterica serovar Typhi str. J185]
Length=37

 Score = 80.5 bits (197),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%), Gaps = 0/37 (0%)

Query  11  ETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGE  47
           ETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGE
Sbjct  1   ETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGE  37


>gi|31280790|gb|AAM51916.1| envelope glycoprotein gp41 domain [Human immunodeficiency virus 
1]
Length=117

 Score = 38.5 bits (88),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 20/64 (32%), Positives = 34/64 (54%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T EE WDN  W  W    + YT T+   I Q  + + + E  +D++ L+ 
Sbjct  48   VPWNSSWSNKTYEEIWDNMTWLQWDKEISNYTETIYTLIEQSQNQQEKNE--QDLLALDK  105

Query  62   PAGL  65
             A L
Sbjct  106  WASL  109


>gi|32811426|gb|AAP87742.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=138

 Score = 38.1 bits (87),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 37/64 (58%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T EE W+N  W  W    + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  61   VPWNSSWSNKTKEEIWENMTWIQWEREISNYTDTI-YRLLEISQNQQE-QNEKDLLSLDS  118

Query  62   PAGL  65
             AGL
Sbjct  119  WAGL  122


>gi|74229335|gb|ABA00283.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=150

 Score = 38.1 bits (87),  Expect = 0.54, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 33/64 (52%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  ++++ EE WDN  W  W    + YT  +   I Q  + + + E  +D++ L+ 
Sbjct  66   VPWNTSWSNKSFEEIWDNMTWIQWDREVSNYTHLIYXLIEQSQNQQEKNE--QDLLALDS  123

Query  62   PAGL  65
             A L
Sbjct  124  WASL  127


>gi|94498747|ref|ZP_01305296.1| hypothetical protein SKA58_14342 [Sphingomonas sp. SKA58]
 gi|94421797|gb|EAT06849.1| hypothetical protein SKA58_14342 [Sphingomonas sp. SKA58]
Length=304

 Score = 38.1 bits (87),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 28/95 (30%), Positives = 45/95 (48%), Gaps = 3/95 (3%)

Query  77   ITGQRPGEFVF-VLGYLGHVRAIVGNCYIEIM--PMGTRVELSKLADVALDIGRSVGCSA  133
            I G   G F+F +L  LG +  ++G  Y+ ++    G   + S  A +AL  GR    S 
Sbjct  91   IVGAGMGVFIFRLLQSLGQIDTVIGILYVLMLGGIGGLMAKESIQALIALKTGRKPQASK  150

Query  134  YENDFTLPDIPTQWRNQPLGWYTQGLAPYLPGLSD  168
              +   +  +P +WR    G Y   LAP+L G++ 
Sbjct  151  RRHHPLVAALPMRWRFYRSGLYISPLAPFLLGMAT  185


>gi|61741742|gb|AAX54757.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=351

 Score = 37.4 bits (85),  Expect = 0.80, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  +++T  E WDN  W  W    + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  97   VPWNTSWSNKTIGEIWDNMTWIQWEREISNYTDTI-YRLLEISQNQQE-QNEKDLLALDS  154

Query  62   PAGL  65
             AGL
Sbjct  155  WAGL  158


>gi|124358424|gb|ABN05662.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=345

 Score = 37.4 bits (85),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  ++++ EE WDN  W  W    + YT T+   I +  + + + E  +D++ L+ 
Sbjct  97   VPWNTSWSNKSXEEIWDNMTWLQWDREISNYTNTIYQLIEEAQNQQEKNE--QDLLSLDQ  154

Query  62   PAGL  65
             A L
Sbjct  155  WASL  158


>gi|124358420|gb|ABN05660.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|170279716|gb|ACB11838.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=345

 Score = 37.4 bits (85),  Expect = 0.87, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  ++++ EE WDN  W  W    + YT T+   I +  + + + E  +D++ L+ 
Sbjct  97   VPWNTSWSNKSXEEIWDNMTWLQWDREISNYTNTIYQLIEEAQNQQEKNE--QDLLSLDQ  154

Query  62   PAGL  65
             A L
Sbjct  155  WASL  158


>gi|32811394|gb|AAP87726.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=145

 Score = 37.4 bits (85),  Expect = 0.87, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 37/64 (58%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T EE W+N  W  W +  + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  66   VPWNSSWSNKTKEEIWENMTWIQWENEISNYTDTI-YRLLEISQNQQE-KNEKDLLALDS  123

Query  62   PAGL  65
             A L
Sbjct  124  WASL  127


>gi|61741752|gb|AAX54762.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=351

 Score = 37.4 bits (85),  Expect = 0.87, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N   +++T +E WDN  W  W    + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  97   VPWNNSWSNKTIKEIWDNMTWIQWEREISNYTDTIY-RLLEISQNQQE-QNEKDLLALDS  154

Query  62   PAGL  65
             AGL
Sbjct  155  WAGL  158


>gi|124358422|gb|ABN05661.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|170279714|gb|ACB11837.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=345

 Score = 37.4 bits (85),  Expect = 0.93, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  ++++ EE WDN  W  W    + YT T+   I +  + + + E  +D++ L+ 
Sbjct  97   VPWNTSWSNKSQEEIWDNMTWLQWDREISNYTNTIYQLIEEAQNQQEKNE--QDLLSLDQ  154

Query  62   PAGL  65
             A L
Sbjct  155  WASL  158


>gi|32811456|gb|AAP87757.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=153

 Score = 37.0 bits (84),  Expect = 1.00, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  +++T EE W+N  W  W    + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  66   VPWNTSWSNKTKEEIWENMTWIQWEREISNYTDTI-YRLLEISQNQQE-QNEKDLLALDS  123

Query  62   PAGL  65
             A L
Sbjct  124  WASL  127


>gi|15216573|gb|AAK92318.1|AF331107_1 envelope glycoprotein [Human immunodeficiency virus 1]
Length=133

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 37/64 (58%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T EE W+N  W  W    + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  65   VPWNSTWSNKTNEEIWNNMTWIQWEREISNYTDTI-YRLLEISQTQQE-QNEKDLLSLDS  122

Query  62   PAGL  65
             AGL
Sbjct  123  WAGL  126


>gi|195934038|gb|ACG58390.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|238734218|gb|ACR55450.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=866

 Score = 37.0 bits (84),  Expect = 1.1, Method: Composition-based stats.
 Identities = 13/35 (38%), Positives = 21/35 (60%), Gaps = 0/35 (0%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTV  36
            +P N+  +++T EE WDN  W  W    + YT+T+
Sbjct  611  VPWNSTWSNKTQEEIWDNMTWLQWDKEISNYTKTI  645


>gi|112379257|gb|ABI16411.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=173

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  ++++ EE WDN  W  W DRE     +   ++ + A  ++E +  ++++ L+ 
Sbjct  98   VPWNTSWSNKSLEEIWDNMTWMQW-DREISNYTSFIYTLIEKAQNQQE-KNEQELLALDT  155

Query  62   PAGL  65
             AGL
Sbjct  156  WAGL  159


>gi|194275057|gb|ACF38198.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=225

 Score = 37.0 bits (84),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  ++++ EE WDN  W  W    + YT  +   I Q    + + E  +D++ L+ 
Sbjct  126  VPWNTSWSNKSFEEIWDNMTWIQWDREVSNYTHLIYXLIEQSQXQQEKNE--QDLLALDS  183

Query  62   PAGL  65
             A L
Sbjct  184  WASL  187


>gi|111434248|gb|ABH09959.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=183

 Score = 37.0 bits (84),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 33/64 (52%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N   +++T  E WDN  W  W    + YT+ +   I Q  + + + E  +D++ L+ 
Sbjct  92   VPWNNSWSNKTFNEIWDNMTWIQWEREISNYTQEIYSLIEQAQNQQEKNE--QDLLALDK  149

Query  62   PAGL  65
             AGL
Sbjct  150  WAGL  153


>gi|45644052|gb|AAS72711.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=132

 Score = 37.0 bits (84),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 34/64 (54%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T E+ WDN  W  W    + YT  +   I +  + + + E  +D++ L+ 
Sbjct  56   VPWNSSWSNKTYEDIWDNMTWLQWDKEISNYTSIIYTLIEESQNQQEKNE--KDLLALDK  113

Query  62   PAGL  65
             AGL
Sbjct  114  WAGL  117


>gi|74229355|gb|ABA00293.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=148

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 19/64 (30%), Positives = 34/64 (54%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P NT  +++T EE WDN  W  W    + YT+ +   I +  + + + E  +D++ L+ 
Sbjct  64   VPWNTSWSNKTYEEIWDNMTWIQWEREISNYTQXIYXLIEESQNQQEKNE--QDLLALDK  121

Query  62   PAGL  65
             A L
Sbjct  122  WANL  125


>gi|1145643|gb|AAB37176.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=855

 Score = 36.6 bits (83),  Expect = 1.3, Method: Composition-based stats.
 Identities = 17/59 (29%), Positives = 34/59 (58%), Gaps = 2/59 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60
            +P N+  +++T +E WDN  W  W    + YT T+   + +V+  ++E E  +D++ L+
Sbjct  600  VPWNSSWSNKTQKEIWDNMTWMQWDKEISNYTDTI-YRLLEVSQNQQE-ENEKDLLALD  656


>gi|310795557|gb|EFQ31018.1| beta-ketoacyl synthase domain-containing protein [Glomerella 
graminicola M1.001]
Length=2460

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 28/98 (29%), Positives = 48/98 (49%), Gaps = 10/98 (10%)

Query  31   GYTRTVTVS---ICQVADGEREAEGVRDMMRLECPAG----LDLRTPNPEAYEITGQRPG  83
            G+ R   VS   I +++D  R+ + +R ++R  C AG    L L TPNPE +E   +R  
Sbjct  253  GFARGEGVSAIYIKRLSDAVRDGDPIRSVIRSTCTAGNGRTLGLTTPNPEIHERLMRRGH  312

Query  84   EFVFVLGYLGHVRAIVGNCYIEIMPMGTRVELSKLADV  121
                  G     +  +  C+    P+G  +E+S +A++
Sbjct  313  RLA---GVTDLSKTAMVECHGTGTPVGDPLEVSAVANI  347


>gi|18253692|gb|AAL66585.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=133

 Score = 36.6 bits (83),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  ++++AEE WDN  W  W DRE      +  ++ +++  ++E +  +D++ L+ 
Sbjct  56   VPWNSSWSNKSAEEIWDNMTWMEW-DREINNYTGIIYNLLEISQNQQE-QNEKDLLSLDS  113

Query  62   PAGL  65
               L
Sbjct  114  WRNL  117


>gi|262341628|gb|ACY54464.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=134

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 35/64 (55%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T  E WDN  W  W    + YT+T+ + I +  + + + E  +D++ L+ 
Sbjct  64   VPWNSSWSNKTYNEIWDNLTWLQWDKEISNYTQTIYLLIEESQNQQEKNE--QDLLALDK  121

Query  62   PAGL  65
             A L
Sbjct  122  WASL  125


>gi|308231443|gb|ADO24428.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=199

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 33/64 (52%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +S+T ++ WDN  W  W    + YT T+   I +  + + + E   D++ L+ 
Sbjct  97   VPWNSTWSSKTYDDIWDNMTWLQWDKEISNYTNTIYTLIEEAQNQQEKNE--HDLLTLDK  154

Query  62   PAGL  65
             A L
Sbjct  155  WASL  158


>gi|15216599|gb|AAK92331.1|AF331120_1 envelope glycoprotein [Human immunodeficiency virus 1]
Length=133

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T EE W+N  W  W    + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  65   VPWNSSWSNKTKEEIWENMTWIQWEREISNYTDTI-YKLLEISQNQQE-QNEKDLLALDS  122

Query  62   PAGL  65
             A L
Sbjct  123  WASL  126


>gi|145222676|ref|YP_001133354.1| hypothetical protein Mflv_2088 [Mycobacterium gilvum PYR-GCK]
 gi|145215162|gb|ABP44566.1| hypothetical protein Mflv_2088 [Mycobacterium gilvum PYR-GCK]
Length=225

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 32/63 (51%), Gaps = 4/63 (6%)

Query  17   WDNSLWCSWGDRETGYTRT--VTVSICQVADGEREAEGVRDMMRLECPAGLDLRTPNPEA  74
            + +S  C  GDR     RT   T+ +C+ ADG  E +GVR  +R      LD  TP P  
Sbjct  131  FVDSARCDSGDRPIAIARTERSTMVVCESADGTLEYQGVR--LRDGASLTLDDVTPIPAG  188

Query  75   YEI  77
            +E+
Sbjct  189  FEV  191


>gi|315443140|ref|YP_004076019.1| hypothetical protein Mspyr1_15140 [Mycobacterium sp. Spyr1]
 gi|315261443|gb|ADT98184.1| hypothetical protein Mspyr1_15140 [Mycobacterium sp. Spyr1]
Length=215

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 32/63 (51%), Gaps = 4/63 (6%)

Query  17   WDNSLWCSWGDRETGYTRT--VTVSICQVADGEREAEGVRDMMRLECPAGLDLRTPNPEA  74
            + +S  C  GDR     RT   T+ +C+ ADG  E +GVR  +R      LD  TP P  
Sbjct  121  FVDSARCDSGDRPIAIARTERSTMVVCESADGTLEYQGVR--LRDGASLTLDDVTPIPAG  178

Query  75   YEI  77
            +E+
Sbjct  179  FEV  181


>gi|5359639|gb|AAD42747.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=122

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 18/65 (28%), Positives = 34/65 (53%), Gaps = 2/65 (3%)

Query  1    MLPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLE  60
             +P N+  +++T +E WDN  W  W    + YTRT+   +    + + + E  +D++ L+
Sbjct  47   FVPWNSSWSNKTQDEIWDNMTWLQWDKEISNYTRTIYRLLEDSQNQQEKNE--QDLLALD  104

Query  61   CPAGL  65
              A L
Sbjct  105  KWANL  109


>gi|156858064|gb|ABU96374.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=230

 Score = 36.2 bits (82),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 33/64 (52%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T E  WDN  W  W      YT T+   + +  + + + E  +D++ L+ 
Sbjct  129  VPWNSSWSNKTYENIWDNMTWLQWDKEINNYTNTIYTLLEESQNQQEKNE--QDLLALDK  186

Query  62   PAGL  65
             AGL
Sbjct  187  WAGL  190


>gi|32811398|gb|AAP87728.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=153

 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  ++++ EE W N  W  W    + YT T+   + +++  ++E +  +D++ L+ 
Sbjct  66   VPWNSSWSNKSTEEIWGNMTWIQWDREISNYTDTI-YRLIEISQNQQE-QNEKDLLALDS  123

Query  62   PAGL  65
             AGL
Sbjct  124  WAGL  127


>gi|110734898|gb|ABG89019.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=150

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 17/64 (27%), Positives = 35/64 (55%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P+NT  +++T +E W+N  W  W    + YT+ +   I +  + + + E  +D++ L+ 
Sbjct  66   VPRNTSWSNKTHDEIWNNMTWIEWDKEISNYTQQIYSLIEESQNQQEKNE--QDLLALDK  123

Query  62   PAGL  65
             A L
Sbjct  124  WASL  127


>gi|18253690|gb|AAL66584.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=133

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  ++++A+E WDN  W  W DRE      +  ++ +++  ++E +  +D++ L+ 
Sbjct  56   VPWNSSWSNKSAKEIWDNMTWMEW-DREISNYTDIIYNLLEISQNQQE-QNEKDLLSLDS  113

Query  62   PAGL  65
               L
Sbjct  114  WKNL  117


>gi|308231435|gb|ADO24424.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=199

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 37/64 (58%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T E+ W+N  W  W D+E G   T+   + + +  ++E +  +D++ L+ 
Sbjct  97   VPWNSSWSNKTYEDIWNNMTWLQW-DKEVGNYTTLIYDLLEKSQNQQE-KNEQDLLALDK  154

Query  62   PAGL  65
             AGL
Sbjct  155  WAGL  158


>gi|183982276|ref|YP_001850567.1| antibiotic ABC transporter ATP-binding protein [Mycobacterium 
marinum M]
 gi|183175602|gb|ACC40712.1| unidentified antibiotic-transport ATP-binding protein ABC transporter 
[Mycobacterium marinum M]
Length=319

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 35/123 (29%), Positives = 50/123 (41%), Gaps = 17/123 (13%)

Query  13   AEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLECPAGLDLR---T  69
            AEE  D  +    G           V++ +    E    G +D +R   P  LDL    +
Sbjct  206  AEELADRLVIIDHG-----------VTVAEGTPSELMRSGAKDQLRFTAPPRLDLSLLVS  254

Query  70   PNPEAYEITGQRPGEFVFVLGYLGHVRAIVGN--CYIEIMPMGTRVELSKLADVALDI-G  126
              PE Y +T   PGE++        V A V      I+++    RVE   L DV LD+ G
Sbjct  255  ALPEDYRVTEVTPGEYLVEGSVDPQVLAAVTAWCARIDVLATDMRVEQRSLEDVFLDLTG  314

Query  127  RSV  129
            R +
Sbjct  315  RKL  317


>gi|298202531|gb|ADI60655.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=135

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 35/64 (55%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T +E WDN  W  W    + YT+T+   I +  + + + E  +D++ L+ 
Sbjct  65   VPWNSSWSNKTYDEIWDNMTWLQWDKEISNYTQTIYQLIEESQNQQEKNE--QDLLALDK  122

Query  62   PAGL  65
             A L
Sbjct  123  WASL  126


>gi|308231445|gb|ADO24429.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=199

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 18/64 (29%), Positives = 36/64 (57%), Gaps = 2/64 (3%)

Query  2    LPKNTRPTSETAEEFWDNSLWCSWGDRETGYTRTVTVSICQVADGEREAEGVRDMMRLEC  61
            +P N+  +++T E+ WDN  W  W D+E G    +   + + +  ++E +  +D++ L+ 
Sbjct  97   VPWNSSWSNKTYEDIWDNMTWLQW-DKEVGNYTNLIYDLLEKSQNQQE-KNEQDLLALDK  154

Query  62   PAGL  65
             AGL
Sbjct  155  WAGL  158



Lambda     K      H
   0.318    0.137    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 145800812160




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40