BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0745

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607885|ref|NP_215259.1|  hypothetical protein Rv0745 [Mycoba...   342    1e-92
gi|289442146|ref|ZP_06431890.1|  conserved hypothetical protein [...   340    4e-92
gi|294996231|ref|ZP_06801922.1|  hypothetical protein Mtub2_17431...   340    5e-92
gi|289568692|ref|ZP_06448919.1|  conserved hypothetical protein [...   327    4e-88
gi|289756832|ref|ZP_06516210.1|  conserved hypothetical protein [...   287    3e-76
gi|308374084|ref|ZP_07434804.2|  LOW QUALITY PROTEIN: hypothetica...   168    3e-40
gi|240173034|ref|ZP_04751692.1|  DEAD/DEAH box helicase [Mycobact...  72.8    2e-11
gi|296166705|ref|ZP_06849130.1|  DEAD/DEAH box family ATP-depende...  71.2    5e-11
gi|183985109|ref|YP_001853400.1|  DEAD/DEAH box helicase [Mycobac...  70.9    8e-11
gi|289763826|ref|ZP_06523204.1|  DeaD/DeaH box family ATP-depende...  70.1    1e-10
gi|340628621|ref|YP_004747073.1|  putative helicase [Mycobacteriu...  69.7    1e-10
gi|15610785|ref|NP_218166.1|  helicase [Mycobacterium tuberculosi...  69.7    1e-10
gi|121639562|ref|YP_979786.1|  putative helicase [Mycobacterium b...  69.7    1e-10
gi|15843261|ref|NP_338298.1|  DEAD-box ATP dependent DNA helicase...  69.7    1e-10
gi|31794819|ref|NP_857312.1|  putative helicase [Mycobacterium bo...  69.7    1e-10
gi|289571886|ref|ZP_06452113.1|  conserved hypothetical protein [...  68.9    2e-10
gi|333992574|ref|YP_004525188.1|  DEAD/DEAH box helicase [Mycobac...  67.8    6e-10
gi|41406520|ref|NP_959356.1|  hypothetical protein MAP0422c [Myco...  67.0    1e-09
gi|254773484|ref|ZP_05215000.1|  ATP-dependent rna helicase, dead...  67.0    1e-09
gi|118465087|ref|YP_879796.1|  ATP-dependent rna helicase, dead/d...  67.0    1e-09
gi|54022329|ref|YP_116571.1|  putative ATP-dependent RNA helicase...  66.2    2e-09
gi|254821832|ref|ZP_05226833.1|  ATP-dependent rna helicase, dead...  65.9    2e-09
gi|342862013|ref|ZP_08718657.1|  ATP-dependent rna helicase, dead...  65.1    3e-09
gi|111021326|ref|YP_704298.1|  helicase [Rhodococcus jostii RHA1]...  64.3    7e-09
gi|262200586|ref|YP_003271794.1|  DEAD/DEAH box helicase [Gordoni...  63.2    2e-08
gi|343926493|ref|ZP_08765998.1|  putative ATP-dependent helicase ...  60.8    7e-08
gi|226303999|ref|YP_002763957.1|  ATP-dependent helicase [Rhodoco...  60.1    1e-07
gi|229494797|ref|ZP_04388553.1|  conserved hypothetical protein [...  60.1    1e-07
gi|226363670|ref|YP_002781452.1|  helicase [Rhodococcus opacus B4...  59.3    2e-07
gi|312138016|ref|YP_004005352.1|  dead/deah box helicase [Rhodoco...  59.3    2e-07
gi|325675221|ref|ZP_08154906.1|  DEAD/DEAH box family ATP-depende...  58.9    2e-07
gi|120406347|ref|YP_956176.1|  DEAD/DEAH box helicase domain-cont...  57.4    8e-07
gi|169627590|ref|YP_001701239.1|  DEAD-box ATP dependent DNA heli...  57.4    8e-07
gi|315446277|ref|YP_004079156.1|  helicase family protein with me...  57.0    1e-06
gi|126437749|ref|YP_001073440.1|  DEAD/DEAH box helicase domain-c...  55.8    2e-06
gi|108801762|ref|YP_641959.1|  DEAD/DEAH box helicase-like protei...  55.8    2e-06
gi|145221983|ref|YP_001132661.1|  DEAD/DEAH box helicase domain-c...  55.5    3e-06
gi|325002267|ref|ZP_08123379.1|  helicase family protein with met...  54.7    5e-06
gi|237786537|ref|YP_002907242.1|  putative helicase [Corynebacter...  53.9    8e-06
gi|227502479|ref|ZP_03932528.1|  possible ATP-dependent helicase ...  53.9    9e-06
gi|62389204|ref|YP_224606.1|  DEAD/DEAH box helicase [Corynebacte...  53.5    1e-05
gi|19551557|ref|NP_599559.1|  helicase [Corynebacterium glutamicu...  53.5    1e-05
gi|344045229|gb|EGV40902.1|  DEAD/DEAH box helicase [Corynebacter...  53.5    1e-05
gi|306834695|ref|ZP_07467770.1|  DEAD/DEAH box family ATP-depende...  53.5    1e-05
gi|145294438|ref|YP_001137259.1|  hypothetical protein cgR_0393 [...  53.5    1e-05
gi|118468463|ref|YP_890380.1|  ATP-dependent rna helicase, dead/d...  52.8    2e-05
gi|258650982|ref|YP_003200138.1|  DEAD/DEAH box helicase domain-c...  52.8    2e-05
gi|227832057|ref|YP_002833764.1|  putative helicase [Corynebacter...  52.8    2e-05
gi|296118094|ref|ZP_06836676.1|  ATP-dependent RNA helicase, DEAD...  52.4    2e-05
gi|319948999|ref|ZP_08023099.1|  hypothetical protein ES5_06352 [...  52.4    3e-05


>gi|15607885|ref|NP_215259.1| hypothetical protein Rv0745 [Mycobacterium tuberculosis H37Rv]
 gi|15840157|ref|NP_335194.1| hypothetical protein MT0772 [Mycobacterium tuberculosis CDC1551]
 gi|31791931|ref|NP_854424.1| hypothetical protein Mb0766 [Mycobacterium bovis AF2122/97]
 52 more sequence titles
 Length=175

 Score =  342 bits (876),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 174/175 (99%), Positives = 175/175 (100%), Gaps = 0/175 (0%)

Query  1    VGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60
            +GPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL
Sbjct  1    MGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60

Query  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120
            PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD
Sbjct  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120

Query  121  YAHQALQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSGVSWALAR  175
            YAHQALQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSGVSWALAR
Sbjct  121  YAHQALQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSGVSWALAR  175


>gi|289442146|ref|ZP_06431890.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289749254|ref|ZP_06508632.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289415065|gb|EFD12305.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289689841|gb|EFD57270.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=175

 Score =  340 bits (873),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 173/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)

Query  1    VGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60
            +GPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL
Sbjct  1    MGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60

Query  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120
            PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD
Sbjct  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120

Query  121  YAHQALQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSGVSWALAR  175
            YAHQ LQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSGVSWALAR
Sbjct  121  YAHQTLQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSGVSWALAR  175


>gi|294996231|ref|ZP_06801922.1| hypothetical protein Mtub2_17431 [Mycobacterium tuberculosis 
210]
 gi|326905033|gb|EGE51966.1| hypothetical protein TBPG_02960 [Mycobacterium tuberculosis W-148]
Length=175

 Score =  340 bits (872),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 173/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)

Query  1    VGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60
            +GPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL
Sbjct  1    MGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60

Query  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120
            PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD
Sbjct  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120

Query  121  YAHQALQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSGVSWALAR  175
            YAHQALQPDVPRRRARRHRPRRCSAKTGSSSS MRCTCHQNQCLWSSGVSWALAR
Sbjct  121  YAHQALQPDVPRRRARRHRPRRCSAKTGSSSSMMRCTCHQNQCLWSSGVSWALAR  175


>gi|289568692|ref|ZP_06448919.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289542446|gb|EFD46094.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=168

 Score =  327 bits (838),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 166/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)

Query  1    VGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60
            +GPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL
Sbjct  1    MGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60

Query  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120
            PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD
Sbjct  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120

Query  121  YAHQALQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSG  168
            YAHQ LQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSG
Sbjct  121  YAHQTLQPDVPRRRARRHRPRRCSAKTGSSSSTMRCTCHQNQCLWSSG  168


>gi|289756832|ref|ZP_06516210.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289712396|gb|EFD76408.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=149

 Score =  287 bits (735),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    VGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60
            +GPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL
Sbjct  1    MGPPHRSRPPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLL  60

Query  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120
            PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD
Sbjct  61   PLVAGCDRRHRRPVRGARAGRAAQVSLCMTAIRVEPVSSNAVCTGPAAQVGDQSRSPQRD  120

Query  121  YAHQALQPDVPRRRARRHRPRRCSAKTGS  149
            YAHQALQPDVPRRRARRHRPRRCSAKTGS
Sbjct  121  YAHQALQPDVPRRRARRHRPRRCSAKTGS  149


>gi|308374084|ref|ZP_07434804.2| LOW QUALITY PROTEIN: hypothetical protein TMFG_03416 [Mycobacterium 
tuberculosis SUMu006]
 gi|308343064|gb|EFP31915.1| LOW QUALITY PROTEIN: hypothetical protein TMFG_03416 [Mycobacterium 
tuberculosis SUMu006]
Length=87

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%), Gaps = 0/87 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDRRHRRPVRGAR  78
            QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDRRHRRPVRGAR
Sbjct  1    QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDRRHRRPVRGAR  60

Query  79   AGRAAQVSLCMTAIRVEPVSSNAVCTG  105
            AGRAAQVSLCMTAIRVEPVSSNAVCTG
Sbjct  61   AGRAAQVSLCMTAIRVEPVSSNAVCTG  87


>gi|240173034|ref|ZP_04751692.1| DEAD/DEAH box helicase [Mycobacterium kansasii ATCC 12478]
Length=774

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 41/50 (82%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            QVLPTTAV++T+T +AL   GID PRIPGSL  A HAAIGLLPL+A CDR
Sbjct  630  QVLPTTAVMYTITPDALASNGIDTPRIPGSLHAAEHAAIGLLPLMASCDR  679


>gi|296166705|ref|ZP_06849130.1| DEAD/DEAH box family ATP-dependent RNA helicase [Mycobacterium 
parascrofulaceum ATCC BAA-614]
 gi|295897970|gb|EFG77551.1| DEAD/DEAH box family ATP-dependent RNA helicase [Mycobacterium 
parascrofulaceum ATCC BAA-614]
Length=780

 Score = 71.2 bits (173),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 40/50 (80%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L TTAV++T+  +AL R GIDAPRIPGSL  A HAAIGLLPLVA CDR
Sbjct  631  QTLATTAVMYTIAEDALLRKGIDAPRIPGSLHAAEHAAIGLLPLVASCDR  680


>gi|183985109|ref|YP_001853400.1| DEAD/DEAH box helicase [Mycobacterium marinum M]
 gi|183178435|gb|ACC43545.1| DEAD/DEAH box helicase [Mycobacterium marinum M]
Length=771

 Score = 70.9 bits (172),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 40/50 (80%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
             VLPTTAV++T+TAE L R G+DA  IPGSL  A HAAIGLLPLVA CDR
Sbjct  627  HVLPTTAVMYTITAEELLRNGVDAVAIPGSLHAAEHAAIGLLPLVASCDR  676


>gi|289763826|ref|ZP_06523204.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium 
tuberculosis GM 1503]
 gi|289711332|gb|EFD75348.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium 
tuberculosis GM 1503]
Length=771

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 41/48 (86%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++T+T++AL R GI+A RIPGSL  A HAAIGLLPLVA CDR
Sbjct  629  LPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDR  676


>gi|340628621|ref|YP_004747073.1| putative helicase [Mycobacterium canettii CIPT 140010059]
 gi|340006811|emb|CCC46000.1| putative helicase [Mycobacterium canettii CIPT 140010059]
Length=771

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 41/48 (86%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++T+T++AL R GI+A RIPGSL  A HAAIGLLPLVA CDR
Sbjct  629  LPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDR  676


>gi|15610785|ref|NP_218166.1| helicase [Mycobacterium tuberculosis H37Rv]
 gi|148663512|ref|YP_001285035.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium 
tuberculosis H37Ra]
 gi|148824851|ref|YP_001289605.1| helicase [Mycobacterium tuberculosis F11]
 42 more sequence titles
 Length=771

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 41/48 (86%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++T+T++AL R GI+A RIPGSL  A HAAIGLLPLVA CDR
Sbjct  629  LPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDR  676


>gi|121639562|ref|YP_979786.1| putative helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224992059|ref|YP_002646748.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121495210|emb|CAL73696.1| Putative helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224775174|dbj|BAH27980.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341603583|emb|CCC66264.1| putative helicase [Mycobacterium bovis BCG str. Moreau RDJ]
Length=771

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 41/48 (86%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++T+T++AL R GI+A RIPGSL  A HAAIGLLPLVA CDR
Sbjct  629  LPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDR  676


>gi|15843261|ref|NP_338298.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis 
CDC1551]
 gi|13883618|gb|AAK48112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium 
tuberculosis CDC1551]
Length=771

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 41/48 (86%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++T+T++AL R GI+A RIPGSL  A HAAIGLLPLVA CDR
Sbjct  629  LPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDR  676


>gi|31794819|ref|NP_857312.1| putative helicase [Mycobacterium bovis AF2122/97]
 gi|289445243|ref|ZP_06434987.1| helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289572296|ref|ZP_06452523.1| helicase [Mycobacterium tuberculosis K85]
 17 more sequence titles
 Length=771

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 41/48 (86%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++T+T++AL R GI+A RIPGSL  A HAAIGLLPLVA CDR
Sbjct  629  LPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDR  676


>gi|289571886|ref|ZP_06452113.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289545640|gb|EFD49288.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=405

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 41/48 (86%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++T+T++AL R GI+A RIPGSL  A HAAIGLLPLVA CDR
Sbjct  263  LPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDR  310


>gi|333992574|ref|YP_004525188.1| DEAD/DEAH box helicase [Mycobacterium sp. JDM601]
 gi|333488542|gb|AEF37934.1| DEAD/DEAH box helicase [Mycobacterium sp. JDM601]
Length=782

 Score = 67.8 bits (164),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 35/48 (73%), Positives = 38/48 (80%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            LPTTAV++TVTAEAL   GI   RIPG+L  A HAAIGLLPLVA CDR
Sbjct  636  LPTTAVVYTVTAEALADCGITEARIPGALHAAEHAAIGLLPLVASCDR  683


>gi|41406520|ref|NP_959356.1| hypothetical protein MAP0422c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394869|gb|AAS02739.1| hypothetical protein MAP_0422c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336460801|gb|EGO39686.1| helicase/secretion neighborhood putative DEAH-box helicase [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=776

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 37/50 (74%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
              L TTA ++T+T EAL   GID PRIPGSL  A HAAIGLLPLVA CDR
Sbjct  630  HTLATTAAMYTITEEALRDNGIDGPRIPGSLHAAEHAAIGLLPLVASCDR  679


>gi|254773484|ref|ZP_05215000.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
avium subsp. avium ATCC 25291]
Length=776

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 37/50 (74%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
              L TTA ++T+T EAL   GID PRIPGSL  A HAAIGLLPLVA CDR
Sbjct  630  HTLATTAAMYTITEEALRDNGIDGPRIPGSLHAAEHAAIGLLPLVASCDR  679


>gi|118465087|ref|YP_879796.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
avium 104]
 gi|118166374|gb|ABK67271.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
avium 104]
Length=776

 Score = 67.0 bits (162),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 37/50 (74%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
              L TTA ++T+T EAL   GID PRIPGSL  A HAAIGLLPLVA CDR
Sbjct  630  HTLATTAAMYTITEEALRDNGIDGPRIPGSLHAAEHAAIGLLPLVASCDR  679


>gi|54022329|ref|YP_116571.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54013837|dbj|BAD55207.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
Length=796

 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 34/51 (67%), Positives = 37/51 (73%), Gaps = 0/51 (0%)

Query  18   CQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
             Q LPT AV +TVT + L   GIDA RIPG+L  A HAAIGLLPLVA CDR
Sbjct  637  AQTLPTKAVFYTVTPDLLAEAGIDARRIPGALHAAEHAAIGLLPLVATCDR  687


>gi|254821832|ref|ZP_05226833.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
intracellulare ATCC 13950]
Length=777

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
              L TT+V++T+T +AL R GID  RIPGSL  A HAAIGLLPLVA CDR
Sbjct  631  HTLATTSVMYTITEDALLRKGIDGTRIPGSLHAAEHAAIGLLPLVASCDR  680


>gi|342862013|ref|ZP_08718657.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
colombiense CECT 3035]
 gi|342130553|gb|EGT83862.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
colombiense CECT 3035]
Length=783

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
              L TTAV++T+T +AL R G++A RIPG+L  A HAAIGLLPLVA CDR
Sbjct  631  HTLATTAVMYTITEDALQRKGVEATRIPGALHAAEHAAIGLLPLVASCDR  680


>gi|111021326|ref|YP_704298.1| helicase [Rhodococcus jostii RHA1]
 gi|110820856|gb|ABG96140.1| possible helicase [Rhodococcus jostii RHA1]
Length=787

 Score = 64.3 bits (155),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q LPT AV++TVT E L R G+ A R+PGSL  A HAAIGLLPLVA CDR
Sbjct  646  QTLPTRAVMYTVTPELLVRAGVPAERVPGSLHAAEHAAIGLLPLVAVCDR  695


>gi|262200586|ref|YP_003271794.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262083933|gb|ACY19901.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 
43247]
Length=775

 Score = 63.2 bits (152),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L T AV++T+T E+L   GIDA R+PGSL  A HAAIGLLPLVA CDR
Sbjct  631  QTLHTRAVMYTLTPESLESAGIDATRLPGSLHAAEHAAIGLLPLVATCDR  680


>gi|343926493|ref|ZP_08765998.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433]
 gi|343763731|dbj|GAA12924.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433]
Length=775

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L T AV++T+T E L   GID  R+PGSL  A HA IGLLPLVA CDR
Sbjct  631  QTLHTRAVMYTLTPEVLAEAGIDDTRLPGSLHAAEHATIGLLPLVATCDR  680


>gi|226303999|ref|YP_002763957.1| ATP-dependent helicase [Rhodococcus erythropolis PR4]
 gi|226183114|dbj|BAH31218.1| putative ATP-dependent helicase [Rhodococcus erythropolis PR4]
Length=782

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 32/51 (63%), Positives = 35/51 (69%), Gaps = 0/51 (0%)

Query  18   CQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
               LPT AV++TVT E L  IG+   R PGSL  A HAAIGLLPLVA CDR
Sbjct  640  AHTLPTRAVMYTVTPELLESIGVPPERFPGSLHAAEHAAIGLLPLVAICDR  690


>gi|229494797|ref|ZP_04388553.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318293|gb|EEN84158.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=762

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 32/51 (63%), Positives = 35/51 (69%), Gaps = 0/51 (0%)

Query  18   CQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
               LPT AV++TVT E L  IG+   R PGSL  A HAAIGLLPLVA CDR
Sbjct  620  AHTLPTRAVMYTVTPELLESIGVPPERFPGSLHAAEHAAIGLLPLVAICDR  670


>gi|226363670|ref|YP_002781452.1| helicase [Rhodococcus opacus B4]
 gi|226242159|dbj|BAH52507.1| putative helicase [Rhodococcus opacus B4]
Length=787

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
              LPT AV++TVT E L + G+ A R+PG+L  A HAAIGLLPLVA CDR
Sbjct  646  HTLPTRAVMYTVTPELLLQAGVPAERVPGALHAAEHAAIGLLPLVAVCDR  695


>gi|312138016|ref|YP_004005352.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311887355|emb|CBH46666.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length=768

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 32/51 (63%), Positives = 36/51 (71%), Gaps = 0/51 (0%)

Query  18   CQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
             Q L T AV++TVT E L   GI A R+PG+L  A HAAIGLLPLVA CDR
Sbjct  620  AQTLHTRAVMYTVTPELLEEHGIGADRVPGALHAAEHAAIGLLPLVATCDR  670


>gi|325675221|ref|ZP_08154906.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus 
equi ATCC 33707]
 gi|325553927|gb|EGD23604.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus 
equi ATCC 33707]
Length=768

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 32/51 (63%), Positives = 36/51 (71%), Gaps = 0/51 (0%)

Query  18   CQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
             Q L T AV++TVT E L   GI A R+PG+L  A HAAIGLLPLVA CDR
Sbjct  620  AQTLHTRAVMYTVTPELLEEHGIGADRVPGALHAAEHAAIGLLPLVATCDR  670


>gi|120406347|ref|YP_956176.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium 
vanbaalenii PYR-1]
 gi|119959165|gb|ABM16170.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii 
PYR-1]
Length=782

 Score = 57.4 bits (137),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 31/48 (65%), Positives = 35/48 (73%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            L T AV+ T+T EAL   GID  R+PGSL  A HAAIGLLPL+A CDR
Sbjct  639  LETMAVMCTITPEALQDNGIDPLRLPGSLHAAEHAAIGLLPLMASCDR  686


>gi|169627590|ref|YP_001701239.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus 
ATCC 19977]
 gi|169239557|emb|CAM60585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium 
abscessus]
Length=769

 Score = 57.4 bits (137),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 31/48 (65%), Positives = 34/48 (71%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            L T AV++TVT EAL  I ID    PG+L  A HAAIGLLPLVA CDR
Sbjct  629  LSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDR  676


>gi|315446277|ref|YP_004079156.1| helicase family protein with metal-binding cysteine cluster [Mycobacterium 
sp. Spyr1]
 gi|315264580|gb|ADU01322.1| helicase family protein with metal-binding cysteine cluster [Mycobacterium 
sp. Spyr1]
Length=781

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/48 (63%), Positives = 35/48 (73%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            L T A + T+T EAL  +GID  RIPG+L  A HAAIGLLPL+A CDR
Sbjct  638  LNTMAAMCTITPEALQDVGIDPLRIPGALHAAEHAAIGLLPLMASCDR  685


>gi|126437749|ref|YP_001073440.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium 
sp. JLS]
 gi|126237549|gb|ABO00950.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length=775

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 31/48 (65%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            L T A + T+T EAL   GID  R PGSL  A HAAIGLLPLVA CDR
Sbjct  632  LDTMAAMCTITPEALLDNGIDPLRFPGSLHAAEHAAIGLLPLVASCDR  679


>gi|108801762|ref|YP_641959.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870913|ref|YP_940865.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium 
sp. KMS]
 gi|108772181|gb|ABG10903.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119697002|gb|ABL94075.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length=775

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 31/48 (65%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            L T A + T+T EAL   GID  R PGSL  A HAAIGLLPLVA CDR
Sbjct  632  LDTMAAMCTITPEALLDNGIDPLRFPGSLHAAEHAAIGLLPLVASCDR  679


>gi|145221983|ref|YP_001132661.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium 
gilvum PYR-GCK]
 gi|145214469|gb|ABP43873.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum PYR-GCK]
Length=781

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 30/48 (63%), Positives = 34/48 (71%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            L T A + T+T EAL   GID  RIPG+L  A HAAIGLLPL+A CDR
Sbjct  638  LNTMAAMCTITPEALQDAGIDPLRIPGALHAAEHAAIGLLPLMASCDR  685


>gi|325002267|ref|ZP_08123379.1| helicase family protein with metal-binding cysteine cluster [Pseudonocardia 
sp. P1]
Length=825

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 28/51 (55%), Positives = 34/51 (67%), Gaps = 0/51 (0%)

Query  18   CQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
             Q L T +V +T+  +AL   GID  R+PG+L  A HAAIGLLPL A CDR
Sbjct  677  AQSLDTRSVWYTIEPDALADAGIDEARLPGALHAAEHAAIGLLPLFAICDR  727


>gi|237786537|ref|YP_002907242.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759449|gb|ACR18699.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length=813

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L TTAV +TV    L R G++    PGSL  A HAAIG+LPL+A CDR
Sbjct  667  QTLTTTAVAYTVEPSTLRRWGVEERDWPGSLHAAEHAAIGMLPLIATCDR  716


>gi|227502479|ref|ZP_03932528.1| possible ATP-dependent helicase [Corynebacterium accolens ATCC 
49725]
 gi|227076848|gb|EEI14811.1| possible ATP-dependent helicase [Corynebacterium accolens ATCC 
49725]
Length=790

 Score = 53.9 bits (128),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L T AV +T+   AL  +GI A  IPG+L  A HAAIGLLPL+A CDR
Sbjct  645  QRLTTRAVAYTIDPLALSAMGITAADIPGTLHAAEHAAIGLLPLIATCDR  694


>gi|62389204|ref|YP_224606.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 13032]
 gi|41324537|emb|CAF18877.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 13032]
Length=798

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q+L T AV +T+   AL  +GI A  IPG+L  A HAAIG+LPL+A CDR
Sbjct  655  QILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDR  704


>gi|19551557|ref|NP_599559.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323071|dbj|BAB97700.1| Distinct helicase family with a unique C-terminal domain including 
a metal-binding cysteine cluster [Corynebacterium glutamicum 
ATCC 13032]
Length=785

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q+L T AV +T+   AL  +GI A  IPG+L  A HAAIG+LPL+A CDR
Sbjct  642  QILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDR  691


>gi|344045229|gb|EGV40902.1| DEAD/DEAH box helicase [Corynebacterium glutamicum S9114]
Length=785

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q+L T AV +T+   AL  +GI A  IPG+L  A HAAIG+LPL+A CDR
Sbjct  642  QILQTRAVAYTIDPLALEAMGIPATDIPGALHAAEHAAIGMLPLLATCDR  691


>gi|306834695|ref|ZP_07467770.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium 
accolens ATCC 49726]
 gi|304569424|gb|EFM44914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium 
accolens ATCC 49726]
Length=465

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L T AV +T+   AL  +GI A  IPG+L  A HAAIGLLPL+A CDR
Sbjct  340  QRLTTRAVAYTIDPLALSAMGITAADIPGTLHAAEHAAIGLLPLIATCDR  389


>gi|145294438|ref|YP_001137259.1| hypothetical protein cgR_0393 [Corynebacterium glutamicum R]
 gi|140844358|dbj|BAF53357.1| hypothetical protein [Corynebacterium glutamicum R]
Length=785

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q+L T AV +T+   AL  +GI A  IPG+L  A HAAIG+LPL+A CDR
Sbjct  642  QILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDR  691


>gi|118468463|ref|YP_890380.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
smegmatis str. MC2 155]
 gi|118169750|gb|ABK70646.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium 
smegmatis str. MC2 155]
Length=776

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/48 (59%), Positives = 34/48 (71%), Gaps = 0/48 (0%)

Query  21   LPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            L T AV+ T+T EAL   GI+   +PG+L  A HA+IGLLPLVA CDR
Sbjct  636  LDTMAVMCTITPEALQDNGIEQLSVPGALHAAEHASIGLLPLVASCDR  683


>gi|258650982|ref|YP_003200138.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella 
multipartita DSM 44233]
 gi|258554207|gb|ACV77149.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita 
DSM 44233]
Length=790

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
              LPT AV +TV+  AL   G+    IPG+L  A HAAIGLLPL AGCDR
Sbjct  640  HTLPTRAVWYTVSRAALRAAGVRDAAIPGALHAAEHAAIGLLPLFAGCDR  689


>gi|227832057|ref|YP_002833764.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184089|ref|ZP_06043510.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453073|gb|ACP31826.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
Length=790

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L T AV +T+   AL  +G+ A R PG+L  A HAAIGLLPL+A CDR
Sbjct  649  QRLVTRAVAYTIDPLALAAMGVTAGRTPGTLHAAEHAAIGLLPLIATCDR  698


>gi|296118094|ref|ZP_06836676.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Corynebacterium 
ammoniagenes DSM 20306]
 gi|295968980|gb|EFG82223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Corynebacterium 
ammoniagenes DSM 20306]
Length=764

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 34/50 (68%), Gaps = 0/50 (0%)

Query  19   QVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            Q L T AV +TV   AL  +GI A  IPG+L  A HAAIGLLPL+A CDR
Sbjct  619  QRLHTRAVAYTVDPLALEAMGIRAADIPGALHAAEHAAIGLLPLIATCDR  668


>gi|319948999|ref|ZP_08023099.1| hypothetical protein ES5_06352 [Dietzia cinnamea P4]
 gi|319437340|gb|EFV92360.1| hypothetical protein ES5_06352 [Dietzia cinnamea P4]
Length=777

 Score = 52.4 bits (124),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 31/60 (52%), Positives = 38/60 (64%), Gaps = 3/60 (5%)

Query  9    PPLPSPGPTCQVLPTTAVIHTVTAEALGRIGIDAPRIPGSLDVAAHAAIGLLPLVAGCDR  68
            PPL  P  T   L T AV++T+T + L   G++    PG+L  A HAAIGLLPLVA CDR
Sbjct  625  PPLDLPETT---LATRAVVYTLTPQLLRVAGLEEADWPGALHAAEHAAIGLLPLVATCDR  681



Lambda     K      H
   0.321    0.132    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 145800812160




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40