BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv0749

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15607889|ref|NP_215263.1|  hypothetical protein Rv0749 [Mycoba...   281    2e-74
gi|121636671|ref|YP_976894.1|  hypothetical protein BCG_0799 [Myc...   279    9e-74
gi|340625767|ref|YP_004744219.1|  hypothetical protein MCAN_07521...   272    9e-72
gi|340625313|ref|YP_004743765.1|  hypothetical protein MCAN_02841...   271    2e-71
gi|253797202|ref|YP_003030203.1|  toxin [Mycobacterium tuberculos...   268    3e-70
gi|306774366|ref|ZP_07412703.1|  toxin [Mycobacterium tuberculosi...   267    5e-70
gi|15607418|ref|NP_214791.1|  hypothetical protein Rv0277c [Mycob...   266    1e-69
gi|289744472|ref|ZP_06503850.1|  conserved hypothetical protein [...   261    2e-68
gi|289756836|ref|ZP_06516214.1|  conserved hypothetical protein [...   206    1e-51
gi|88811999|ref|ZP_01127252.1|  hypothetical protein NB231_06401 ...   110    8e-23
gi|116748338|ref|YP_845025.1|  PilT domain-containing protein [Sy...   108    3e-22
gi|340627865|ref|YP_004746317.1|  hypothetical protein MCAN_28941...   102    2e-20
gi|15610009|ref|NP_217388.1|  hypothetical protein Rv2872 [Mycoba...   102    2e-20
gi|121638754|ref|YP_978978.1|  hypothetical protein BCG_2894 [Myc...   100    6e-20
gi|297623624|ref|YP_003705058.1|  PIN domain-containing protein [...  98.2    3e-19
gi|240171734|ref|ZP_04750393.1|  hypothetical protein MkanA1_2064...  95.5    3e-18
gi|297567544|ref|YP_003686516.1|  PIN domain-containing protein f...  94.7    4e-18
gi|296130776|ref|YP_003638026.1|  PIN domain protein family prote...  94.4    5e-18
gi|116624725|ref|YP_826881.1|  PilT domain-containing protein [Ca...  94.4    6e-18
gi|297623633|ref|YP_003705067.1|  PIN domain-containing protein [...  93.2    1e-17
gi|88810689|ref|ZP_01125946.1|  hypothetical protein NB231_16453 ...  89.7    1e-16
gi|308270136|emb|CBX26748.1|  hypothetical protein N47_A07770 [un...  89.7    1e-16
gi|300780204|ref|ZP_07090060.1|  PilT domain protein [Corynebacte...  84.3    5e-15
gi|340627115|ref|YP_004745567.1|  hypothetical protein MCAN_21291...  82.8    1e-14
gi|15609240|ref|NP_216619.1|  hypothetical protein Rv2103c [Mycob...  80.1    1e-13
gi|15841594|ref|NP_336631.1|  hypothetical protein MT2163 [Mycoba...  80.1    1e-13
gi|289758220|ref|ZP_06517598.1|  conserved hypothetical protein [...  79.3    2e-13
gi|333991903|ref|YP_004524517.1|  PIN domain-containing protein f...  79.3    2e-13
gi|160898241|ref|YP_001563823.1|  PilT domain-containing protein ...  79.0    2e-13
gi|307084750|ref|ZP_07493863.1|  toxin [Mycobacterium tuberculosi...  78.6    3e-13
gi|320105317|ref|YP_004180907.1|  PIN domain-containing protein f...  77.8    5e-13
gi|145221522|ref|YP_001132200.1|  PilT domain-containing protein ...  77.0    9e-13
gi|333990439|ref|YP_004523053.1|  hypothetical protein JDM601_179...  74.7    4e-12
gi|229822546|ref|YP_002884072.1|  PIN domain-containing protein f...  73.6    1e-11
gi|294054235|ref|YP_003547893.1|  PIN domain-containing protein f...  73.2    1e-11
gi|15608382|ref|NP_215758.1|  hypothetical protein Rv1242 [Mycoba...  72.4    2e-11
gi|289573902|ref|ZP_06454129.1|  toxin [Mycobacterium tuberculosi...  69.7    2e-10
gi|289750699|ref|ZP_06510077.1|  conserved hypothetical protein [...  69.3    2e-10
gi|240168912|ref|ZP_04747571.1|  hypothetical protein MkanA1_0634...  68.9    2e-10
gi|240170675|ref|ZP_04749334.1|  PIN domain protein family protei...  68.6    3e-10
gi|302542963|ref|ZP_07295305.1|  putative toxin-antitoxin system,...  62.0    3e-08
gi|284122509|ref|ZP_06386855.1|  PIN domain family protein [Candi...  61.6    4e-08
gi|322435687|ref|YP_004217899.1|  PIN domain protein family prote...  61.6    4e-08
gi|167967876|ref|ZP_02550153.1|  hypothetical protein MtubH3_0751...  56.6    1e-06
gi|258593476|emb|CBE69815.1|  conserved protein of unknown functi...  55.8    2e-06
gi|258593480|emb|CBE69819.1|  Conserved membrane protein [NC10 ba...  49.7    1e-04
gi|340628670|ref|YP_004747122.1|  hypothetical protein MCAN_37181...  48.9    2e-04
gi|15610833|ref|NP_218214.1|  hypothetical protein Rv3697c [Mycob...  48.9    2e-04
gi|31794868|ref|NP_857361.1|  hypothetical protein Mb3723c [Mycob...  48.1    4e-04
gi|312622997|ref|YP_004024610.1|  PilT protein domain-containing ...  47.0    0.001


>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
 gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
 gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=142

 Score =  281 bits (719),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC
Sbjct  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            AVVSLDRDFARFASVRHIRPPL
Sbjct  121  AVVSLDRDFARFASVRHIRPPL  142


>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
 10 more sequence titles
 Length=142

 Score =  279 bits (714),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 142/142 (100%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SPRAEAFAFVEAVTAQPHHLPTNPGPRHL+LLRKLCDEADASGDLIPDAVLAAIAVGHHC
Sbjct  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            AVVSLDRDFARFASVRHIRPPL
Sbjct  121  AVVSLDRDFARFASVRHIRPPL  142


>gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521 [Mycobacterium canettii CIPT 
140010059]
 gi|340003957|emb|CCC43092.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142

 Score =  272 bits (696),  Expect = 9e-72, Method: Compositional matrix adjust.
 Identities = 137/142 (97%), Positives = 139/142 (98%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SPRA AFAF++AVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAV HHC
Sbjct  61   SPRAAAFAFIDAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            AVVSLDRDFARF SVRHIRPPL
Sbjct  121  AVVSLDRDFARFTSVRHIRPPL  142


>gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841 [Mycobacterium canettii CIPT 
140010059]
 gi|340003503|emb|CCC42624.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142

 Score =  271 bits (693),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 136/142 (96%), Positives = 140/142 (99%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SPRA+AFAFV+AVTAQPHHLPT+PGPRHLMLLRKLCDEADASGDLIPDAVLAAIAV HHC
Sbjct  61   SPRADAFAFVDAVTAQPHHLPTSPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            AVVSLDRDFARFASVRHIRPP+
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculosis KZN 1435]
 gi|289552530|ref|ZP_06441740.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297632757|ref|ZP_06950537.1| toxin [Mycobacterium tuberculosis KZN 4207]
 gi|297729731|ref|ZP_06958849.1| toxin [Mycobacterium tuberculosis KZN R506]
 gi|313657057|ref|ZP_07813937.1| toxin [Mycobacterium tuberculosis KZN V2475]
 gi|253318705|gb|ACT23308.1| toxin [Mycobacterium tuberculosis KZN 1435]
 gi|289437162|gb|EFD19655.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328456989|gb|AEB02412.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=142

 Score =  268 bits (684),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 133/142 (94%), Positives = 138/142 (98%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SPRA+AFAFVEAVTAQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAV HHC
Sbjct  61   SPRADAFAFVEAVTAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            AVVSLDRDFARFASVRHIRPP+
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
 gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142

 Score =  267 bits (682),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 133/142 (94%), Positives = 138/142 (98%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SPRA+AFAFVEAV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVLAAIAV HHC
Sbjct  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            AVVSLDRDFARFASVRHIRPP+
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycobacterium tuberculosis H37Rv]
 gi|15839658|ref|NP_334695.1| hypothetical protein MT0289 [Mycobacterium tuberculosis CDC1551]
 gi|31791455|ref|NP_853948.1| hypothetical protein Mb0283c [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=142

 Score =  266 bits (679),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 132/142 (93%), Positives = 137/142 (97%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MFL+D NVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRL TNRRIFEIP
Sbjct  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SPRA+AFAFVEAV AQPHHLPT+PGPRHL+LLRKLCDEADASGDLIPDAVL AIAV HHC
Sbjct  61   SPRADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHC  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            AVVSLDRDFARFASVRHIRPP+
Sbjct  121  AVVSLDRDFARFASVRHIRPPI  142


>gi|289744472|ref|ZP_06503850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289685000|gb|EFD52488.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=131

 Score =  261 bits (667),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%)

Query  12   AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVE  71
            AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVE
Sbjct  1    AHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVE  60

Query  72   AVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFAR  131
            AVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFAR
Sbjct  61   AVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFAR  120

Query  132  FASVRHIRPPL  142
            FASVRHIRPPL
Sbjct  121  FASVRHIRPPL  131


>gi|289756836|ref|ZP_06516214.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289712400|gb|EFD76412.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=104

 Score =  206 bits (523),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  39   VPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDE  98
            +PNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDE
Sbjct  1    MPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDE  60

Query  99   ADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL  142
            ADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL
Sbjct  61   ADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL  104


>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
 gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145

 Score =  110 bits (274),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 54/136 (40%), Positives = 79/136 (59%), Gaps = 0/136 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M L+D NVL+ AHR D  +H   R W +  +     + V +LV + F+R+ T+ R+FE P
Sbjct  1    MILMDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRVFERP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            +P   A AFV  V +QP  +P  PGPRH  +  KL   + A G+L+PDA  AA+A+   C
Sbjct  61   TPLDRALAFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHAALAIEAGC  120

Query  121  AVVSLDRDFARFASVR  136
              ++ D+ F RF  +R
Sbjct  121  DWITTDKGFLRFPGLR  136


>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans 
MPOB]
 gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 57/140 (41%), Positives = 77/140 (55%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M L+D N+LL A   D P H   R W + +L+  +   +P +V  +FLR+ TN RIFE P
Sbjct  1    MILVDVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
                 A A+VE   AQP      PG  H M+LR L  ++   G+L  DA +AA+A+ +  
Sbjct  61   LSVERAVAYVEEWLAQPVATTVTPGKSHWMILRNLLLDSGTGGNLTTDAHIAALAIEYGH  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             V S D DF RF  +RHI P
Sbjct  121  TVYSTDNDFKRFQGLRHINP  140


>gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941 [Mycobacterium canettii CIPT 
140010059]
 gi|157382523|gb|ABV48756.1| Rv2872 [Mycobacterium canettii]
 gi|340006055|emb|CCC45225.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=147

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 57/140 (41%), Positives = 81/140 (58%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M  +D NVL+ AHR D   H   R   +RL   D+P  +P+ V A F+R+ TNRR+F  P
Sbjct  1    MLCVDVNVLVYAHRADLREHTDYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            +   +A+  V+A+ A P  +   PG RH M  R+L  + DA+G+ I DA LAA A+ ++ 
Sbjct  61   TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
              +S DR FARF  +R   P
Sbjct  121  TWLSADRGFARFRRLRWRHP  140


>gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycobacterium tuberculosis H37Rv]
 gi|15842413|ref|NP_337450.1| hypothetical protein MT2939 [Mycobacterium tuberculosis CDC1551]
 gi|31794049|ref|NP_856542.1| hypothetical protein Mb2897 [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=147

 Score =  102 bits (253),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 57/140 (41%), Positives = 81/140 (58%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M  +D NVL+ AHR D   H   R   +RL   D+P  +P+ V A F+R+ TNRR+F  P
Sbjct  1    MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            +   +A+  V+A+ A P  +   PG RH M  R+L  + DA+G+ I DA LAA A+ ++ 
Sbjct  61   TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
              +S DR FARF  +R   P
Sbjct  121  TWLSADRGFARFRRLRWRHP  140


>gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224991246|ref|YP_002645935.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121494402|emb|CAL72883.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774361|dbj|BAH27167.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341602792|emb|CCC65470.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=147

 Score =  100 bits (249),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 80/140 (58%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M  +D NVL+ AHR D   H   R   +RL   D+P  +P+ V A F+R+ TNRR+F  P
Sbjct  1    MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            +   +A+  V+ + A P  +   PG RH M  R+L  + DA+G+ I DA LAA A+ ++ 
Sbjct  61   TSPQDAWQAVDTLLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
              +S DR FARF  +R   P
Sbjct  121  TWLSADRGFARFRRLRWRHP  140


>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=144

 Score = 98.2 bits (243),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 51/140 (37%), Positives = 79/140 (57%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M LLD N L+ A R D P H     W ++L+  D  F + ++V + F+R+ T+ R+F  P
Sbjct  1    MILLDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVFSPP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            SP  +A  ++E + AQP+ +   PG RH  +  +LC    A G+++PDA LAA+A+    
Sbjct  61   SPLDDALEYLEDIRAQPNCVILAPGERHWRIFLQLCHAVGAKGNVVPDAYLAALAIESGS  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + + DR  ARF  +R   P
Sbjct  121  ELATADRGVARFPGLRWRHP  140


>gi|240171734|ref|ZP_04750393.1| hypothetical protein MkanA1_20640 [Mycobacterium kansasii ATCC 
12478]
 gi|157382510|gb|ABV48746.1| Rv2872 [Mycobacterium kansasii ATCC 12478]
Length=143

 Score = 95.5 bits (236),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 63/143 (45%), Positives = 86/143 (61%), Gaps = 6/143 (4%)

Query  1    MFLLDANVLLAAHRGD---HPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIF  57
            M  +D NVL+ AHR D   HPN+R V    +RL   D+P  +P+ V A F+R+ TNRRIF
Sbjct  1    MHCVDVNVLVNAHRADLREHPNYRDV---LERLANGDEPLGLPDSVLAGFVRVVTNRRIF  57

Query  58   EIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVG  117
              P+ + +A+  V+A+ A P  +   PG RH  L R+L  + DASG+ I DA LAA A+ 
Sbjct  58   VEPTSQPDAWQAVDALLAAPAAIRLKPGERHWTLFRQLAADIDASGNDIADAYLAAYALE  117

Query  118  HHCAVVSLDRDFARFASVRHIRP  140
            ++   VS DR FARF  +R   P
Sbjct  118  NNATWVSADRGFARFGRLRWRHP  140


>gi|297567544|ref|YP_003686516.1| PIN domain-containing protein family protein [Meiothermus silvanus 
DSM 9946]
 gi|296851993|gb|ADH65008.1| PIN domain protein family protein [Meiothermus silvanus DSM 9946]
Length=143

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 50/140 (36%), Positives = 74/140 (53%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M++LD NVL+ A R D P H     W    LA  +   VP+ V  + LR+ T   + ++ 
Sbjct  1    MYVLDVNVLIYAFRRDSPQHPACYAWLSGSLATGESVGVPSWVELAVLRINTLPSLGDLA  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            +P  +  AF+  + + P +    PGP+HL +   LC      G+ + DA +AA+A+ H  
Sbjct  61   APLKDVLAFLYELRSHPSYQLVEPGPKHLPIFEDLCQRLGLRGNDLNDAFIAALAIEHGA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             +VS DR FARF  VR I P
Sbjct  121  TLVSTDRGFARFPGVRRIDP  140


>gi|296130776|ref|YP_003638026.1| PIN domain protein family protein [Cellulomonas flavigena DSM 
20109]
 gi|296022591|gb|ADG75827.1| PIN domain protein family protein [Cellulomonas flavigena DSM 
20109]
Length=143

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 54/136 (40%), Positives = 74/136 (55%), Gaps = 0/136 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M L D NVL+ A R D P H  +R W +  + A +P  + + V    +R+ T+ R+F  P
Sbjct  1    MILPDVNVLVGALRADSPRHDALRRWLEAAVDAPEPLGLTDAVLGGTVRVLTHPRVFARP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            +P   A   V  + A P  +   PG RH  ++  LC  ADA G+L+ DA  AA+AV H  
Sbjct  61   TPLRTALDLVGDLRAHPGTVRVAPGDRHWEIVADLCRAADARGNLVADAQHAAVAVEHGA  120

Query  121  AVVSLDRDFARFASVR  136
              VS DRDFARF  +R
Sbjct  121  TWVSQDRDFARFPGLR  136


>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142

 Score = 94.4 bits (233),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 52/140 (38%), Positives = 77/140 (55%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M LLDAN+LL A   D P H++ R W ++ L+ D+P      V  +FLRL T   +F  P
Sbjct  1    MKLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
                +AF  V +  A+P  +  + GPRHL ++ +L      +G+L  DA L A+A+  + 
Sbjct  61   LSPDQAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGTAGNLTSDAHLGALAIEQNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DFARF+ V  + P
Sbjct  121  QLCSCDSDFARFSGVDWLNP  140


>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=145

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 57/140 (41%), Positives = 74/140 (53%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M L+DAN+L+ AH    P H     W D  L+A     +P     +FLRL TN R+FE P
Sbjct  1    MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
               AEA+A VEA  + P      P   H  LLR L  +  A+ +LIPDA LAA+A+ H  
Sbjct  61   LTAAEAWAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPDAHLAALALEHGL  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DF RF  ++   P
Sbjct  121  TLCSTDGDFGRFPRLKWRNP  140


>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
 gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 51/143 (36%), Positives = 79/143 (56%), Gaps = 6/143 (4%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWAS---FLRLATNRRIF  57
            M + D N+L+ A+  D P+H   + W++ LL++++P  +P   WAS   F+RL T+R + 
Sbjct  1    MIVPDVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLP---WASALGFIRLMTHRAVL  57

Query  58   EIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVG  117
             +P   + A  +V +  ++ +     PGPRHL LL  L      +G L  D  LAA+A+ 
Sbjct  58   VMPVEPSRAVEYVRSWHSRSNVSALEPGPRHLELLDGLFAALGTAGKLTTDTHLAALAIE  117

Query  118  HHCAVVSLDRDFARFASVRHIRP  140
            H C + S D DFARF  +R   P
Sbjct  118  HQCVLCSNDGDFARFPGLRWRNP  140


>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium 
sp.]
Length=143

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 48/140 (35%), Positives = 75/140 (54%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M L+DAN+LL A     P H+  R W+D  L+  +P  +   V ++F+R+ TN R+FE P
Sbjct  1    MILVDANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEHP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
             P  +A   V++   QP      P  +H  +   +     A  +L+ DA LAA+A+ + C
Sbjct  61   LPLEQALTRVQSWLDQPCTRVIQPTEQHWAVFMMMLKGGQAVANLVTDAHLAALAIENGC  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DF+RF  ++ I P
Sbjct  121  DLASTDSDFSRFPKLKWINP  140


>gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
 gi|300534314|gb|EFK55373.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
Length=145

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 46/139 (34%), Positives = 71/139 (52%), Gaps = 0/139 (0%)

Query  2    FLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPS  61
             ++DANVL+ A   +  +      W D  L   +    P +   +F R+ TN  +F +P 
Sbjct  1    MIIDANVLIYASDENATHFAEASSWLDGALRGTERVGFPWICLLAFQRITTNPALFAMPL  60

Query  62   PRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCA  121
              + A  ++E     P+     PGP+H  +LR L  ++DA G L+ DA LAA+A+ H  +
Sbjct  61   TPSRASDYIENWLKHPNSWVPQPGPQHASILRTLTVDSDARGTLVTDAHLAALAIEHGTS  120

Query  122  VVSLDRDFARFASVRHIRP  140
            + S D DFARF  +R   P
Sbjct  121  ICSFDSDFARFQGLRWFSP  139


>gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291 [Mycobacterium canettii CIPT 
140010059]
 gi|340005305|emb|CCC44461.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=144

 Score = 82.8 bits (203),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 53/141 (38%), Positives = 71/141 (51%), Gaps = 0/141 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M ++DANVLL A      +H+    W D  L+  D      +   SF+RLAT   +F  P
Sbjct  1    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLSFVRLATKVGLFPRP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
             PR  A   V    A P  +  NP  RH  +L ++        +L+ DA LAA+AV H  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RFA VR  +PP
Sbjct  121  SIVSYDSDFGRFAGVRWDQPP  141


>gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycobacterium tuberculosis H37Rv]
 gi|31793285|ref|NP_855778.1| hypothetical protein Mb2129c [Mycobacterium bovis AF2122/97]
 gi|121637987|ref|YP_978211.1| hypothetical protein BCG_2122c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 67 more sequence titles
 Length=144

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 51/141 (37%), Positives = 70/141 (50%), Gaps = 0/141 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M ++DANVLL A      +H+    W D  L+  D      +   +F+RLAT   +F  P
Sbjct  1    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
             PR  A   V    A P  +  NP  RH  +L ++        +L+ DA LAA+AV H  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RF  VR  +PP
Sbjct  121  SIVSYDSDFGRFEGVRWDQPP  141


>gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
 gi|13881843|gb|AAK46445.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
Length=145

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 51/141 (37%), Positives = 70/141 (50%), Gaps = 0/141 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M ++DANVLL A      +H+    W D  L+  D      +   +F+RLAT   +F  P
Sbjct  2    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  61

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
             PR  A   V    A P  +  NP  RH  +L ++        +L+ DA LAA+AV H  
Sbjct  62   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  121

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RF  VR  +PP
Sbjct  122  SIVSYDSDFGRFEGVRWDQPP  142


>gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294997046|ref|ZP_06802737.1| hypothetical protein Mtub2_21708 [Mycobacterium tuberculosis 
210]
 gi|289713784|gb|EFD77796.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326903715|gb|EGE50648.1| toxin [Mycobacterium tuberculosis W-148]
 gi|339295024|gb|AEJ47135.1| hypothetical protein CCDC5079_1945 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298648|gb|AEJ50758.1| hypothetical protein CCDC5180_1921 [Mycobacterium tuberculosis 
CCDC5180]
Length=144

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 51/141 (37%), Positives = 70/141 (50%), Gaps = 0/141 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M ++DANVLL A      +H+    W D  L+  D      +   +F+RLAT   +F  P
Sbjct  1    MKIVDANVLLYAVNTASEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
             PR  A   V    A P  +  NP  RH  +L ++        +L+ DA LAA+AV H  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPP  141
            ++VS D DF RF  VR  +PP
Sbjct  121  SIVSYDSDFGRFEGVRWDQPP  141


>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp. 
JDM601]
 gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 47/139 (34%), Positives = 71/139 (52%), Gaps = 0/139 (0%)

Query  2    FLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPS  61
             LLDAN+LL A   D  ++     W +  L  D+   +P     +FLR+ T+ R+ E P 
Sbjct  1    MLLDANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPL  60

Query  62   PRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCA  121
            P +EA+++V    A P             +   +C +AD +G+L+PDA LAA+A+ H   
Sbjct  61   PPSEAWSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQLAALAIEHGVE  120

Query  122  VVSLDRDFARFASVRHIRP  140
            + S D DF RF  +R   P
Sbjct  121  LASADSDFQRFPGLRWFNP  139


>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
 gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 53/137 (39%), Positives = 74/137 (55%), Gaps = 16/137 (11%)

Query  5    DANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNL---VWASFLRLATNRRIFEIPS  61
            D N+L+AA R DHP+H   R W ++ +A      +  L   V ASFLRL T+ +IF  P+
Sbjct  4    DVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFVNPT  63

Query  62   PRAEAFAFVEAVTAQPHHLPTNPGPRHLML------LRKLCDEADASGDLIPDAVLAAIA  115
            P AEA  F++A+ A       +PG    +L      LR+LC +   + + +PDA LAA A
Sbjct  64   PMAEALRFIDALLA-------SPGVEQAVLGAEWPALRQLCADKALAANDVPDAWLAAAA  116

Query  116  VGHHCAVVSLDRDFARF  132
            +     VVS D DF R 
Sbjct  117  IHQGEHVVSFDADFKRL  133


>gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|308365680|gb|EFP54531.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=143

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 51/142 (36%), Positives = 70/142 (50%), Gaps = 0/142 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M ++DANVLL A      +H+    W D  L+  D      +   +F+RLAT   +F  P
Sbjct  1    MKIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
             PR  A   V    A P  +  NP  RH  +L ++        +L+ DA LAA+AV H  
Sbjct  61   LPREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRA  120

Query  121  AVVSLDRDFARFASVRHIRPPL  142
            ++VS D DF RF  VR  +P L
Sbjct  121  SIVSYDSDFGRFEGVRWDQPAL  142


>gi|320105317|ref|YP_004180907.1| PIN domain-containing protein family protein [Terriglobus saanensis 
SP1PR4]
 gi|319923838|gb|ADV80913.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=145

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 45/143 (32%), Positives = 74/143 (52%), Gaps = 6/143 (4%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M LLDAN+L+ A+    P+H+    W +R+ ++ +P  +P     +FLR+ T++    +P
Sbjct  1    MILLDANLLIYAYDEAAPHHKRSSKWIERIFSSREPVLIPVAAIMAFLRIMTHQ---ALP  57

Query  61   SPR---AEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVG  117
             PR    E    V+   +  H      G  H   LR+   +  A   L+ D+ LAA+A+ 
Sbjct  58   GPRFSMEEGIGIVDEWFSLSHVSIAITGNEHWNYLRQTLTDGQARSSLVTDSHLAALAIE  117

Query  118  HHCAVVSLDRDFARFASVRHIRP  140
            +   + S+DRDFARF  +R + P
Sbjct  118  NGATLCSVDRDFARFPGLRWVDP  140


>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145

 Score = 77.0 bits (188),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 49/139 (36%), Positives = 70/139 (51%), Gaps = 6/139 (4%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWA---SFLRLATNRRIF  57
            M ++DANVLL A      +H   R W D  L+ +D   V  L W    +F+RL T   +F
Sbjct  1    MRIVDANVLLYAVNSSSEHHDASRRWLDGALSGND---VVGLAWVPMLAFVRLTTKHGLF  57

Query  58   EIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVG  117
              P    +A A +    + P  +  NP  RH  +L  L  +    G+L+ DA LAA+A+ 
Sbjct  58   PSPLTPDDAMARITDWCSAPGAVIVNPTARHADVLATLLSDVGTGGNLVNDAHLAALALE  117

Query  118  HHCAVVSLDRDFARFASVR  136
            H   +VS D DF RF+ V+
Sbjct  118  HRARIVSYDNDFGRFSGVQ  136


>gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_1799 [Mycobacterium sp. JDM601]
 gi|333486407|gb|AEF35799.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 51/140 (37%), Positives = 69/140 (50%), Gaps = 1/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M ++DANVLL A      +H     W DR L+  D      +   +F+RL+T   +F  P
Sbjct  1    MKIVDANVLLYAVNTAAEHHDASLRWLDRALSGADTVGFAWVPLLAFVRLSTKEGLFPHP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
                +A   V   TA    +  NP PRH  +L  L     A G+L+ DA LAA+A+ H  
Sbjct  61   LRPEDAVDRVAEWTAASSAVVVNPTPRHADILTGLLARVGAGGNLVNDAHLAALAIEHRG  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             +VS D DF RF  +R  RP
Sbjct  121  GIVSYDADFGRF-GIRWDRP  139


>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae 
DSM 12333]
 gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM 
12333]
Length=143

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 48/132 (37%), Positives = 69/132 (53%), Gaps = 2/132 (1%)

Query  2    FLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPS  61
             ++DANVLL A     P HR  + W +  L+      +P     +F R+A++ R    P 
Sbjct  1    MIVDANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPL  60

Query  62   PRAEAFAFV-EAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
                A+AF+ E + A P  +PT PG  H  +L +L    D  G+L+ DA LAA+A+ H  
Sbjct  61   TPGAAWAFITEWLRADPAWIPT-PGDGHAAILGRLLTAGDLRGNLVTDAHLAALALEHGV  119

Query  121  AVVSLDRDFARF  132
             + S D DFARF
Sbjct  120  GICSFDSDFARF  131


>gi|294054235|ref|YP_003547893.1| PIN domain-containing protein family protein [Coraliomargarita 
akajimensis DSM 45221]
 gi|293613568|gb|ADE53723.1| PIN domain protein family protein [Coraliomargarita akajimensis 
DSM 45221]
Length=142

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 44/140 (32%), Positives = 68/140 (49%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M L DAN+L+ AH     +H T + W++  L+  +   +P +V  +F R+ T+ +I E P
Sbjct  1    MILPDANLLIYAHDHSSRDHATAKDWWETALSGSESIGIPWIVVLAFTRILTHPQICEAP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
                +    VE     P         R L +   L ++A   G+L  DA++AA A  H  
Sbjct  61   LGVTQVRELVEQWFDSPQVRLIQTSNRALPVFFDLLEDAGMGGNLSTDALIAAHAREHSA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S DRDF RF  +R + P
Sbjct  121  VIYSCDRDFDRFMGIRWVNP  140


>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
 gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
 gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=143

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 48/142 (34%), Positives = 67/142 (48%), Gaps = 4/142 (2%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFE  58
            M + D N+LL A     P HR    W+   +        T P L    FLR+AT+ R+  
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA  58

Query  59   IPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGH  118
             P P A+A A+V    +QP+      GPRHL +   L D+   +  L  D  LAA  + +
Sbjct  59   APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY  118

Query  119  HCAVVSLDRDFARFASVRHIRP  140
               + S D DFARFA ++   P
Sbjct  119  DAEIHSSDTDFARFADLKWTDP  140


>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
 gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143

 Score = 69.7 bits (169),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 47/142 (34%), Positives = 66/142 (47%), Gaps = 4/142 (2%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFE  58
            M + D N+LL A     P HR    W+   +        T P L    FLR+AT+ R+  
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA  58

Query  59   IPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGH  118
             P P A+A A+V    +QP+      GPRHL +   L D+   +     D  LAA  + +
Sbjct  59   APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHRTTDVQLAAYGIEY  118

Query  119  HCAVVSLDRDFARFASVRHIRP  140
               + S D DFARFA ++   P
Sbjct  119  DAEIHSSDTDFARFADLKWTDP  140


>gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691286|gb|EFD58715.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=136

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 45/133 (34%), Positives = 63/133 (48%), Gaps = 0/133 (0%)

Query  9    LLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFA  68
            +L A      +H+    W D  L+  D      +   +F+RLAT   +F  P PR  A  
Sbjct  1    MLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLPREAAIT  60

Query  69   FVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRD  128
             V    A P  +  NP  RH  +L ++        +L+ DA LAA+AV H  ++VS D D
Sbjct  61   QVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASIVSYDSD  120

Query  129  FARFASVRHIRPP  141
            F RF  VR  +PP
Sbjct  121  FGRFEGVRWDQPP  133


>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC 
12478]
Length=143

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 46/140 (33%), Positives = 64/140 (46%), Gaps = 0/140 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M + D N+LL A     P HR    W+   + + +   +       FLR+ TN RI   P
Sbjct  1    MIIPDVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARILTEP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
                EA A+V     QP+     P  RHL L   L ++   + +L  D  LAA A+ H+ 
Sbjct  61   LSATEAVAYVRDWLTQPNVDLLIPSARHLDLALGLLEQLGTASNLTTDVQLAAYAIEHNA  120

Query  121  AVVSLDRDFARFASVRHIRP  140
             + S D DFARFA +    P
Sbjct  121  EMHSSDADFARFAGLAWTNP  140


>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC 
12478]
Length=142

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 43/139 (31%), Positives = 69/139 (50%), Gaps = 0/139 (0%)

Query  2    FLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPS  61
             ++DAN+LL A      ++     W + +LA D    +P     +FLR+AT+ R+ E P 
Sbjct  1    MIVDANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPL  60

Query  62   PRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCA  121
                A+ +V    A P             +  +L ++ + +G+L+PDA LAA+AV H   
Sbjct  61   SGPAAWRYVAEWLAVPVVWIPPATETTARVYARLSEQVEITGNLVPDAQLAALAVEHGVE  120

Query  122  VVSLDRDFARFASVRHIRP  140
            + S D DF RF  +R + P
Sbjct  121  LASADTDFMRFPGLRWMNP  139


>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces hygroscopicus ATCC 53653]
 gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces himastatinicus ATCC 53653]
Length=144

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 38/133 (29%), Positives = 65/133 (49%), Gaps = 1/133 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M  +D N+L+ AHR D P H         L  A  P+ +P      F  +AT+ RI++ P
Sbjct  1    MIAVDTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            S   +A A ++A  + P  +  +    +   LR++ ++   +G ++ D  +AA+      
Sbjct  61   STAEQAIAQIDAWLSSPSVVLLSEADTYWPTLRQMLEDGKVAGPMVHDGRIAALCANSGV  120

Query  121  -AVVSLDRDFARF  132
              + S DRDF+RF
Sbjct  121  RELWSADRDFSRF  133


>gi|284122509|ref|ZP_06386855.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283829353|gb|EFC33749.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
Length=143

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 37/135 (28%), Positives = 61/135 (46%), Gaps = 1/135 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M  LD NVL+ AHR +   H         L     P+ +P      FLR+ T+ R+F  P
Sbjct  1    MRALDTNVLIHAHRKEMAKHAEAGQLLRNLAEGTKPWGLPVFCLGEFLRVVTHHRVFTPP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHC  120
            +    A A ++ +   P      PG R+         +  A+G+++ DA + A+ + H  
Sbjct  61   TTIQNALAALDGLLQSPTVRLLLPGDRYWSCFHNAISQGQATGNVVFDAQIVAVCLEHGI  120

Query  121  A-VVSLDRDFARFAS  134
              ++S DR+  RF +
Sbjct  121  DFLISEDRELKRFEN  135


>gi|322435687|ref|YP_004217899.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163414|gb|ADW69119.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
Length=143

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 51/141 (37%), Positives = 71/141 (51%), Gaps = 1/141 (0%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLA-ADDPFTVPNLVWASFLRLATNRRIFEI  59
            M +LDAN+LL A+      H+  R + D + +   +   +P     +FLRL TN  +   
Sbjct  1    MIVLDANLLLYAYTARSSFHQPARSYLDHIFSDTSESIGIPIQCATAFLRLITNPAVTGA  60

Query  60   PSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHH  119
                 +A A VE   A PH     PG  H   L+ +     A+GDLI DA +AA A+ + 
Sbjct  61   RIAMDDAIARVEEWQALPHVRILYPGEEHWQFLKTVTRNGHATGDLIADAAIAAFALEYG  120

Query  120  CAVVSLDRDFARFASVRHIRP  140
              V S DRDFARF+S+R   P
Sbjct  121  AVVHSNDRDFARFSSIRWHNP  141


>gi|167967876|ref|ZP_02550153.1| hypothetical protein MtubH3_07513 [Mycobacterium tuberculosis 
H37Ra]
Length=123

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 39/124 (32%), Positives = 56/124 (46%), Gaps = 4/124 (3%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFE  58
            M + D N+LL A     P HR    W+   +        T P L    FLR+AT+ R+  
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLA  58

Query  59   IPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGH  118
             P P A+A A+V    +QP+      GPRHL +   L D+   +  L  D  LAA  + +
Sbjct  59   APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY  118

Query  119  HCAV  122
               +
Sbjct  119  DAEI  122


>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=144

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 44/142 (31%), Positives = 65/142 (46%), Gaps = 2/142 (1%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            MF+ D NVL+ A   D P HR               + +   +   FLR+ T+ R+F  P
Sbjct  1    MFVSDTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQP  60

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEA-DASGDLIPDAVLAAIAVGHH  119
             P A A+ F+EAV A P      P  RH  ++ ++  E    +G++I DA  A +   H 
Sbjct  61   WPAARAWEFIEAVLASPGLSLLLPTDRHATVVAEVFGELPHLAGNVIHDAHTAILMREHG  120

Query  120  C-AVVSLDRDFARFASVRHIRP  140
               + + D DF RF  +  I P
Sbjct  121  IRRIYTRDTDFHRFPFLEPIDP  142


>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 39/140 (28%), Positives = 62/140 (45%), Gaps = 1/140 (0%)

Query  2    FLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPS  61
            + +D NVLL A     P H     + +      D F +      ++LR+AT  RIF  P 
Sbjct  3    YSVDVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFARPL  62

Query  62   PRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCA  121
              ++A   VE++ + P     + G   L   R +       G+L+PDA LA +   H   
Sbjct  63   SPSDALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHGVG  122

Query  122  -VVSLDRDFARFASVRHIRP  140
             + + DRDF +F  +  + P
Sbjct  123  RLYTADRDFRKFDFLEVVDP  142


>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT 
140010059]
 gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT 
140010059]
Length=145

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)

Query  4    LDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPR  63
             D +VL+ A     P H   +   +R LA      +   V   +LR+ T+  +   P   
Sbjct  5    FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP  64

Query  64   AEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVV  123
              A   +E  T++PH            + R++ D     G+L+PDA L A+   H  A +
Sbjct  65   EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI  124

Query  124  -SLDRDFARFASVRHIRPPL  142
             S DRDF +F  +R IR P 
Sbjct  125  WSHDRDFRKFEGIR-IRDPF  143


>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
 gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
 gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
 62 more sequence titles
 Length=145

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)

Query  4    LDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPR  63
             D +VL+ A     P H   +   +R LA      +   V   +LR+ T+  +   P   
Sbjct  5    FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP  64

Query  64   AEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVV  123
              A   +E  T++PH            + R++ D     G+L+PDA L A+   H  A +
Sbjct  65   EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI  124

Query  124  -SLDRDFARFASVRHIRPPL  142
             S DRDF +F  +R IR P 
Sbjct  125  WSHDRDFRKFEGIR-IRDPF  143


>gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycobacterium bovis AF2122/97]
 gi|121639611|ref|YP_979835.1| hypothetical protein BCG_3756c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224992107|ref|YP_002646796.1| hypothetical protein JTY_3757 [Mycobacterium bovis BCG str. Tokyo 
172]
 10 more sequence titles
 Length=145

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)

Query  4    LDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPR  63
             D +VL+ A     P H   +   +R LA      +   V   +LR+ T+  +   P   
Sbjct  5    FDVDVLVHATHRASPFHDKAKTLVERFLARPGLVYLLWPVALGYLRVVTHPTLLGAPLAP  64

Query  64   AEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVV  123
              A   +E  T++PH            + R++ D     G+L+PDA L A+   H  A +
Sbjct  65   EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI  124

Query  124  -SLDRDFARFASVRHIRPPL  142
             S DRDF +F  +R IR P 
Sbjct  125  WSHDRDFRKFEGIR-IRDPF  143


>gi|312622997|ref|YP_004024610.1| PilT protein domain-containing protein [Caldicellulosiruptor 
kronotskyensis 2002]
 gi|312203464|gb|ADQ46791.1| PilT protein domain protein [Caldicellulosiruptor kronotskyensis 
2002]
Length=132

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 33/137 (25%), Positives = 65/137 (48%), Gaps = 14/137 (10%)

Query  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIP  60
            M L+D +VL+   +G+  N +  +  F+ +L    PF + +L++   L+ A N + FE+ 
Sbjct  1    MILVDTSVLIDFFKGN-TNEKVKK--FEWVLTNKIPFGITHLIYQEILQGAKNEKEFELL  57

Query  61   SPRAEAFAFVEAVTAQPHHLPTNPGPRH--LMLLRKLCDEADASGDLIPDAVLAAIAVGH  118
                      E ++ QP +  T     +    LL   C +   +     D ++A IA+ +
Sbjct  58   K---------EYLSTQPFYELTKGKKSYEEAALLYFKCKKRGINLKSTVDVIIAQIAIEN  108

Query  119  HCAVVSLDRDFARFASV  135
            +  ++  DRD+++ A V
Sbjct  109  NLYLLHNDRDYSKIAKV  125



Lambda     K      H
   0.328    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129798780480




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40